<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:34:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544150" ref_strand="+" ref_description="SGN-E544150 [TUS-66-F9](-)">
      <seq>gggatgagctcgctcagatcttgataggttgttgttattgtatgcatccaaggcgtatacttctagttcagcaaaagtgttgatgatgattcctttggcttttctatacccacgagcaaaatcgagaaatctccctaaccatgtgtctctatcgactagaaccattggcaatacgttcgtaggaacagggtatgcgtagctaggaaatgataacagagcagtaccatcatcagagtttttgaaactggaaacatctctcgaacactcatcttcaagaaactggaaatgaatcatcaacccaagaaaagcagcaggggaagtgaaaaacacatagctcgggatcccaaactcttcagctacatccatcaatggagtgcataacatgtctacaacaaatccagcaagtttaacaccgccccgttgacttattaaaaattccctgattcgagatttttgagtttgtactaatctgttaacaaagtgtcctcgagttttagagctccattccggggttggatcaacaggtggtaattcaaagaatcgaagacgttcagaggatgatgaatcaattacagagtcgacaaaagggccactaacagggtcgatgtaatcagggagtttcataatgaggacagtgattgagagttgatgatttcgattgatgaaaagcttggccaactccaacatctgagcaacatggcccattgccggagaagggatcagaatcaattctgctaatttctccataggatcaaattgtttctttcaattcaactgctaatgtactttcactaaaatggaagaagagatgtttacaacaataaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="14100" stop="12673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13800" g_stop="12973" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E544150" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13800" e_stop="12973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGAGCTTGCTCAGATCTTGATAGGTTGTTGTTATTGTATGCATCCAAGGCGTATACTTCTAGTTCAGCAAAAGTGTTGATGATGATTCCTTTGGCTTTTCTATACCCACGAGCAAAATCGAGAAATCTCCCTAACCATGTGTCTCTATCGACTAGAACCATTGGCAATACGTTCGTAGGAACAGGGTATGCGTAGCTAGGAAATGATAACAGAGCAGTACCATCATCAGAGTTTTTGAAACTGGAAACATCTCTCGAACACTCATCTTCAAGAAACTGGAAATGAATCATCAACCCAAGAAAAGCAGCAGGGGAAGTGAAAAACACATAGCTCGGGATCCCAAACTCTTCAGCTACATCCATCAATGGAGTGCATAACATGTCTACAACAAATCCAGCAAGTTTAACACCGCCCCGTTGACTTATTAAAAATTCCCTGATTCGAGATTTTTGAGTTTGTACTAATCTGTTAACAAAGTGTCCTCGAGTTTTAGAGCTCCATTCCGGGGTTGGATCAACAGGTGGTAATTCAAAGAATCGAAGACGTTCAGAGGATGATGAATCAATTACAGAGTCGACAAAAGGGCCACTAACAGGGTCGATGTAATCAGGGAGTTTCATAATGAGGACAGTGATTGAGAGTTGATGATTTCGATTGATGAAAAGCTTGGCCAACTCCAACATCTGAGCAACATGGCCCATTGCCGGAGAAGGGATCAGAATCAATTCTGCTAATTTCTCCATAGGATCAAATTGTTTCTTTCAATTCAACTGCTAATGTACTTTCACTAAAATGGAAGAA-AGATGTTTACAACAATACATAAA</genome_strand>
        <mrna_strand>GGGATGAGCTCGCTCAGATCTTGATAGGTTGTTGTTATTGTATGCATCCAAGGCGTATACTTCTAGTTCAGCAAAAGTGTTGATGATGATTCCTTTGGCTTTTCTATACCCACGAGCAAAATCGAGAAATCTCCCTAACCATGTGTCTCTATCGACTAGAACCATTGGCAATACGTTCGTAGGAACAGGGTATGCGTAGCTAGGAAATGATAACAGAGCAGTACCATCATCAGAGTTTTTGAAACTGGAAACATCTCTCGAACACTCATCTTCAAGAAACTGGAAATGAATCATCAACCCAAGAAAAGCAGCAGGGGAAGTGAAAAACACATAGCTCGGGATCCCAAACTCTTCAGCTACATCCATCAATGGAGTGCATAACATGTCTACAACAAATCCAGCAAGTTTAACACCGCCCCGTTGACTTATTAAAAATTCCCTGATTCGAGATTTTTGAGTTTGTACTAATCTGTTAACAAAGTGTCCTCGAGTTTTAGAGCTCCATTCCGGGGTTGGATCAACAGGTGGTAATTCAAAGAATCGAAGACGTTCAGAGGATGATGAATCAATTACAGAGTCGACAAAAGGGCCACTAACAGGGTCGATGTAATCAGGGAGTTTCATAATGAGGACAGTGATTGAGAGTTGATGATTTCGATTGATGAAAAGCTTGGCCAACTCCAACATCTGAGCAACATGGCCCATTGCCGGAGAAGGGATCAGAATCAATTCTGCTAATTTCTCCATAGGATCAAATTGTTTCTTTCAATTCAACTGCTAATGTACTTTCACTAAAATGGAAGAAGAGATGTTTACAACAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697548" ref_strand="+" ref_description="SGN-E697548 [FA03BC10]">
      <seq>ccccattatatctttcttccattttagtgaaagtacattacgcagctgtatattgaaagaaacaatttgatcctatggagaaattagcagaattgattctgatcccttctccggcaatgggccatgttgctcagatgttggagttggccaagcttttcatcaatcgaaatcatcaactctcaatcactgtcctcattatgaaactccctgattacatcgaccctgttagtggcccttttgtcgactctgtaattgattcatcatcctctgaacgtcttccattctttgaattaccacctgttgatccaaccccggaatggagctctaaaactcgaggacactttgttaacagattattacaaactcaaaaatctccaatcagggaatttttaataagtcaacggggcggtgttaaacttgctggatctgatgtagacatgttatgcactccattgatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="12690" stop="13741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12992" g_stop="13441" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="462" r_length="453" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E697548" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12992" e_stop="13441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTCCATTTTAGTGAAAGTACATTA-GCAGTTG-A-ATTGAAAGAAACAATTTGATCCTATGGAGAAATTAGCAGAATTGATTCTGATCCCTTCTCCGGCAATGGGCCATGTTGCTCAGATGTTGGAGTTGGCCAAGCTTTTCATCAATCGAAATCATCAACTCTCAATCACTGTCCTCATTATGAAACTCCCTGATTACATCGACCCTGTTAGTGGCCCTTTTGTCGACTCTGTAATTGATTCATCATCCTCTGAACGTCTTCGATTCTTTGAATTACCACCTGTTGATCCAACCCCGGAATGGAGCTCTAAAACTCGAGGACACTTTGTTAACAGATTAGTACAAACTCAAAAATCTCGAATCAGGGAATTTTTAATAAGTCAACGGGGCGGTGTTAAACTTGCTGGATTTGTTGTAGACATGTTATGCACTCCATTGATGGATG</genome_strand>
        <mrna_strand>ATCTTTCTTCCATTTTAGTGAAAGTACATTACGCAGCTGTATATTGAAAGAAACAATTTGATCCTATGGAGAAATTAGCAGAATTGATTCTGATCCCTTCTCCGGCAATGGGCCATGTTGCTCAGATGTTGGAGTTGGCCAAGCTTTTCATCAATCGAAATCATCAACTCTCAATCACTGTCCTCATTATGAAACTCCCTGATTACATCGACCCTGTTAGTGGCCCTTTTGTCGACTCTGTAATTGATTCATCATCCTCTGAACGTCTTCCATTCTTTGAATTACCACCTGTTGATCCAACCCCGGAATGGAGCTCTAAAACTCGAGGACACTTTGTTAACAGATTATTACAAACTCAAAAATCTCCAATCAGGGAATTTTTAATAAGTCAACGGGGCGGTGTTAAACTTGCTGGATCTGATGTAGACATGTTATGCACTCCATTGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548995" ref_strand="+" ref_description="SGN-E548995 [TUS-66-F9]">
      <seq>ctttcatcatctttgcttcatgtcttactgcggagttagtttccatcaatttacttatcccattttcgatggcttctgctgttactatagcttgatctttattcctctcgcagtaatccaaagtaatctccactgctactcctatctctttcactaattgaaacgcgttaacctgctgttctgagtgcaatggccatgtcgctataggaacaccataccataagctttcaagtatcgaattccatccacagtgtgatacgaatcccccgattgcttcgtgagacaacactttcaattgtggaacccatcctaccactttcccttttttctctgttctctttaggaatccttcaggcaaaatttctgaatagctcgtgtattctcctggaaattgagcgttgttgctctgaggtggacgacgtaaagaccataagaaacggcaaccaatgttatcgagagctatagcgatctgtttcacttgatccgttggtaaactcccctggctcccaaaacagagtagcaccaccgaattaggtggctgtttgtccagccaatttgttatttctgcctcctctgactccgactgtgatttcgattggtttaaaattggaccaattggatagatggatgggcaggggatgagcttgctcagatcttgataggttgttgttattgtatgcatccaaggcgtatacttctagttcagcaaaagtgttgatgatgattcctttgggctttctatacccacgagcaaaatcgagaaatctccctaaccatgtgtctctatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="14734" stop="13344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14434" g_stop="13644" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E548995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14434" e_stop="13644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATCATCTTTGCTTCATGTCTTACTGCGGAGTTAGTTTCCATCAATTTACTTATCCCATTTTCGATGGCTTCTGCTGTTACTATAGCTTGATCTTTATTCCTCTCGCAGTAATCCAAAGTAATCTCCACTGCTACTCCTATCTCTTTCACTAATTGAAACGCGTTAACCTGCTGTTCTGAGTGCAATGGCCATGTCGCTATAGGAACACCATACCATAAGCTTTCAAGTATCGAATTCCATCCACAGTGTGATACGAATCCCCCGATTGCTTCGTGAGACAACACTTTCAATTGTGGAACCCATCCTACCACTTTCCCTTTTTTCTCTGTTCTCTTTAGGAATCCTTCAGGCAAAATTTCTGAATAGCTCGTGTATTCTCCTGGAAATTGAGCGTTGTTGCTCTGAGGTGGACGACGTAAAGACCATAAGAAACGGCAACCAATGTTATCGAGAGCTATAGCGATCTGTTTCACTTGATCCGTTGGTAAACTCCCCTGGCTCCCAAAACAGAGTAGCACCACCGAATTAGGTGGCTGTTTGTCCAGCCAATTTGTTATTTCTGCCTCCTCTGACTCCGACTGTGATTTCGATTGGTTTAAAATTGGACCAATTGGATAGATGGAT-GGCAGGGGATGAGCTTGCTCAGATCTTGATAGGTTGTTGTTATTGTATGCATCCAAGGCGTATACTTCTAGTTCAGCAAAAGTGTTGATGATGATTCCTTTGGCTTTTCTATACCCACGAGCAAAATCGAGAAATCTCCCTAACCATGTGTCTCTATCGACT</genome_strand>
        <mrna_strand>CTTTCATCATCTTTGCTTCATGTCTTACTGCGGAGTTAGTTTCCATCAATTTACTTATCCCATTTTCGATGGCTTCTGCTGTTACTATAGCTTGATCTTTATTCCTCTCGCAGTAATCCAAAGTAATCTCCACTGCTACTCCTATCTCTTTCACTAATTGAAACGCGTTAACCTGCTGTTCTGAGTGCAATGGCCATGTCGCTATAGGAACACCATACCATAAGCTTTCAAGTATCGAATTCCATCCACAGTGTGATACGAATCCCCCGATTGCTTCGTGAGACAACACTTTCAATTGTGGAACCCATCCTACCACTTTCCCTTTTTTCTCTGTTCTCTTTAGGAATCCTTCAGGCAAAATTTCTGAATAGCTCGTGTATTCTCCTGGAAATTGAGCGTTGTTGCTCTGAGGTGGACGACGTAAAGACCATAAGAAACGGCAACCAATGTTATCGAGAGCTATAGCGATCTGTTTCACTTGATCCGTTGGTAAACTCCCCTGGCTCCCAAAACAGAGTAGCACCACCGAATTAGGTGGCTGTTTGTCCAGCCAATTTGTTATTTCTGCCTCCTCTGACTCCGACTGTGATTTCGATTGGTTTAAAATTGGACCAATTGGATAGATGGATGGGCAGGGGATGAGCTTGCTCAGATCTTGATAGGTTGTTGTTATTGTATGCATCCAAGGCGTATACTTCTAGTTCAGCAAAAGTGTTGATGATGATTCCTTTGGGCTTTCTATACCCACGAGCAAAATCGAGAAATCTCCCTAACCATGTGTCTCTATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306967" ref_strand="+" ref_description="SGN-E306967 [cLEY-11-F7]">
      <seq>tttcatcatctttgcttcatgtcttactgcggagttagtgtccatcaatttacttatcccattttcgatggcttctgctgttactatagcttgatctttattcctctcgcagtaatccaaagtaatctccactgctactcctatctctttcactaattgaaacgcgttaacctgctgttctgagtgcaatggccatgtcgctataggaacaccataccataagctttcaagtatcgaattccatccacagtgtgatacgaatcccccgattgcttcgtgagacaacactttcaattgtggaacccatcctaccactttcccttttttctctgttctctttaggaatccttcaggcaaaatttctgaatagctcgtgtattctcctggaaattgagcgttgttgctctgaggtggacgacgtaaagaccataagaaacggcaaccaatgttatcgagagctatagcgatctgcttcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="14733" stop="13652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14433" g_stop="13952" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E306967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14433" e_stop="13952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCATCTTTGCTTCATGTCTTACTGCGGAGTTAGTTTCCATCAATTTACTTATCCCATTTTCGATGGCTTCTGCTGTTACTATAGCTTGATCTTTATTCCTCTCGCAGTAATCCAAAGTAATCTCCACTGCTACTCCTATCTCTTTCACTAATTGAAACGCGTTAACCTGCTGTTCTGAGTGCAATGGCCATGTCGCTATAGGAACACCATACCATAAGCTTTCAAGTATCGAATTCCATCCACAGTGTGATACGAATCCCCCGATTGCTTCGTGAGACAACACTTTCAATTGTGGAACCCATCCTACCACTTTCCCTTTTTTCTCTGTTCTCTTTAGGAATCCTTCAGGCAAAATTTCTGAATAGCTCGTGTATTCTCCTGGAAATTGAGCGTTGTTGCTCTGAGGTGGACGACGTAAAGACCATAAGAAACGGCAACCAATGTTATCGAGAGCTATAGCGATCTGTTTCACTTGAT</genome_strand>
        <mrna_strand>TTTCATCATCTTTGCTTCATGTCTTACTGCGGAGTTAGTGTCCATCAATTTACTTATCCCATTTTCGATGGCTTCTGCTGTTACTATAGCTTGATCTTTATTCCTCTCGCAGTAATCCAAAGTAATCTCCACTGCTACTCCTATCTCTTTCACTAATTGAAACGCGTTAACCTGCTGTTCTGAGTGCAATGGCCATGTCGCTATAGGAACACCATACCATAAGCTTTCAAGTATCGAATTCCATCCACAGTGTGATACGAATCCCCCGATTGCTTCGTGAGACAACACTTTCAATTGTGGAACCCATCCTACCACTTTCCCTTTTTTCTCTGTTCTCTTTAGGAATCCTTCAGGCAAAATTTCTGAATAGCTCGTGTATTCTCCTGGAAATTGAGCGTTGTTGCTCTGAGGTGGACGACGTAAAGACCATAAGAAACGGCAACCAATGTTATCGAGAGCTATAGCGATCTGCTTCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21477" stop="20476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21178" g_stop="20775" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21178" e_stop="20775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCTCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCTTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAAGAGATTAGGGAATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCTGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540120" ref_strand="-" ref_description="SGN-E540120 [TUS-60-D17]">
      <seq>ggaattgctattttggttcctaagggcgcgagaaaggctgatgatgatctttatcgagctgttgatatctacttgaaggcacatccacatttggatgaaattgaaagagaaaaagtgtgtagtgtgatggatcctttgaaactatcacatgaagcaagagtccatgcttctcaaaacaaacgtttgccggtgcaaatagtccttcatgctctctatttcgatcaactaaagataaggagcggagcagcagatgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcacacttgatcaagattgatttcatcttttaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28772" stop="27347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28472" g_stop="28395" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28394" i_stop="28301" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="27648" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="731" r_length="653" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="732" polyA_stop="749"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E540120" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540120" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28472" e_stop="28395"/>
          <exon e_start="28300" e_stop="27648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAGGTGAGATCTTTAAATATATATATATATATATGTATATGAGTATCAACTACAACAAGTTAACAATTATATTGAACATGTTGTGCTAAAATTGCAGGCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAGATTGATTTCATCTTTTT</genome_strand>
        <mrna_strand>GGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAG..............................................................................................GCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAGATTGATTTCATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286216" ref_strand="-" ref_description="SGN-E286216 [cLES-11-E14]">
      <seq>tgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcacacttgatcaagattgatttcatcttttaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28427" stop="27347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28127" g_stop="27648" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="498"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E286216" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286216" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28127" e_stop="27648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAGATTGATTTCATCTTTTT</genome_strand>
        <mrna_strand>TGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAGATTGATTTCATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253511" ref_strand="-" ref_description="SGN-E253511 [cLEG-24-E6]">
      <seq>ggtgcaaatagtccttcatgctctctatttcgatcaactaaagataaggagcggagcagcagatgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28490" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28190" g_stop="27665" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E253511" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253511" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28190" e_stop="27665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAG</genome_strand>
        <mrna_strand>GGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347595" ref_strand="+" ref_description="SGN-E347595 [cTOF-26-O24]">
      <seq>gcttctcaaaacaaacgtttgccggtgcaaatagtccttcatgctctctatttcgatcaactaaagataaggagcggagcagcagatgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcacacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28513" stop="27369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28213" g_stop="27669" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E347595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28213" e_stop="27669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGAT</genome_strand>
        <mrna_strand>GCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745285" ref_strand="+" ref_description="SGN-E745285 [GI|47105793]">
      <seq>gacataaaagttttccgctctatgcactaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattctaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctagagtcgattgtgactctgttgcccgcggagagagcagcttttccaatcaatttcttgtgttgtctcctgcgtacagctattttcttaagagcagccagtagctgcaagaatgaattggagaaaaggatatcagcaatactagaacacgtgacagtcgatgatctgttagtcttgtctttttcttacgacggagaaagactattcgatcttgagagcgtgaggagaatcatttccggatttatggagaaagagaagagtgtagctgtgtttaaaggtggtgattttggagacgtttgtaccaccgctatgcagagagttgcaaagactgtcgatgcttatcttggtgaaatcgctacatttggagatctcagtatatcaaaattcaatggaattgctattttggttcctaagggcgcgagaaaggctgatgatgatctttatcgagctgttgatatctacttgaaggcacatccacatttggatgaaattgaaagagaaaaagtgtgtagtgtgatggatcctttgaaactatcacatgaagcaagagtccatgcttctcaaaacaaacgtttgccggtgcaaatagtccttcatgctctctatttcgatcaactaaagataaggagcggagcagcagatgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcacacttgatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30260" stop="27364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29961" g_stop="29858" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="174" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="552" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28395" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="1278" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28394" i_stop="28301" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28300" g_stop="27671" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1908" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1912" polyA_stop="1931"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E745285" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1908</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29961" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28395"/>
          <exon e_start="28300" e_stop="27671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAAAGGATATCAGCAATACTAGAACACGTGACAGTCGATGATCTGTTAGTCTTGTCTTTTTCTTACGACGGAGAAAGACTATTCGATCTTGAGAGCGTGAGGAGAATCATTTCCGGATTTATGGAGAAAGAGAAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAGGTGAGATCTTTAAATATATATATATATATATGTATATGAGTATCAACTACAACAAGTTAACAATTATATTGAACATGTTGTGCTAAAATTGCAGGCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTG</genome_strand>
        <mrna_strand>GACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCTAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAAAGGATATCAGCAATACTAGAACACGTGACAGTCGATGATCTGTTAGTCTTGTCTTTTTCTTACGACGGAGAAAGACTATTCGATCTTGAGAGCGTGAGGAGAATCATTTCCGGATTTATGGAGAAAGAGAAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAG..............................................................................................GCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222504" ref_strand="+" ref_description="SGN-E222504 [cLEL-16-C18](-)">
      <seq>caaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28287" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27987" g_stop="27677" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="331"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E222504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27987" e_stop="27677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCA</genome_strand>
        <mrna_strand>CAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222191" ref_strand="+" ref_description="SGN-E222191 [cLEL-16-G23](-)">
      <seq>agcggaccaccacatgatagtaataacaacatgcccgaagccatggcaccaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagagcgcagttgctaaatatgaagatgtccatagcagatatccagaaagcaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatctttctaagcctaggagaagaaaattttccatatcttaagctatttccattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgttctgtaaacgactgattgattatgttgtttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28441" stop="27404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28141" g_stop="27707" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="452"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E222191" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28141" e_stop="27707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATT</genome_strand>
        <mrna_strand>AGCGGACCACCACATGATAGTAATAACAACATGCCCGAAGCCATGGCACCAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAGCGCAGTTGCTAAATATGAAGATGTCCATAGCAGATATCCAGAAAGCAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTTCTAAGCCTAGGAGAAGAAAATTTTCCATATCTTAAGCTATTTCCATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTTCTGTAAACGACTGATTGATTATGTTGTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342267" ref_strand="+" ref_description="SGN-E342267 [cTOF-8-O1]">
      <seq>aagagtgtagctgtgtttaaaggtggtgattttggagacgtttgtaccaccgctatgcagagagttgcaaagactgtcgatgcttatcttggtgaaatcgctacatttggagatctcagtatatcaaaattcaatggaattgctattttggttcctaagggcgcgagaaaggctgatgatgatctttatcgagctgttgatatctacttgaaggcacatccacatttggatgaaattgaaagagaaaaagtgtgtagtgtgatggatcctttgaaactatcacatgaagcaagagtccatgcttctcaaaacaaacgtttgccggtgcaaatagtccttcatgctctctatttcgatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattggtgatgatgctgctctagatcttactaagcctangagaagaagatnntccatatcttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="28907" stop="27503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28607" g_stop="28395" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28394" i_stop="28301" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28159" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="355" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28158" i_stop="28087" i_length="72">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28086" g_stop="27803" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="639" r_length="284" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E342267" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28607" e_stop="28395"/>
          <exon e_start="28300" e_stop="28159"/>
          <exon e_start="28086" e_stop="27803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAGGTGAGATCTTTAAATATATATATATATATATGTATATGAGTATCAACTACAACAAGTTAACAATTATATTGAACATGTTGTGCTAAAATTGCAGGCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCT</genome_strand>
        <mrna_strand>AAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAG..............................................................................................GCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCG........................................................................ATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGGTGATGATGCTGCTCTAGATCTTACTAAGCCTANGAGAAGAAGATNNTCCATATCTTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254492" ref_strand="+" ref_description="SGN-E254492 [cLEG-29-E15]">
      <seq>ttcctcttgcaccatgatctcaatatcattcaaagatgtgttgacatggccggggctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctagagtcgattgtgactctgttgcccgcggagagagcagcttttccaatcaatttcttgtgttgtctcctgcgtacagctattttcttaagagcagccagtagctgcaagaatgaattggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29546" stop="28437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29246" g_stop="29188" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29120" g_stop="28737" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="444" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E254492" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29246" e_stop="29188"/>
          <exon e_start="29120" e_stop="28737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTTGCA-CATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</genome_strand>
        <mrna_strand>TTCCTCTTGCACCATGATCTCAATATCATTCAAAGATGTGTTGACATGGCCGGGGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738687" ref_strand="+" ref_description="SGN-E738687 [LC14CE03]">
      <seq>ctaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctagagtcgattgtgactctgttgcccgcggagagagcagcttttccatcaatttcttgtgttgtctcctgcgtacagctattttcttaagagcagccagtagctgcaagaatgaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30235" stop="28442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29935" g_stop="29858" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="148" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="526" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28742" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="904" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E738687" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29935" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGG</genome_strand>
        <mrna_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCC-ATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737719" ref_strand="+" ref_description="SGN-E737719 [LC10DH10]">
      <seq>gtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctagagtcgattgtgactctgttgcccgcggagagagcagcttttccaatcaatttcttgtgttgtctcctgcgtacagctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30082" stop="28477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29782" g_stop="29714" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="447" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29120" g_stop="28777" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="791" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E737719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29782" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTT</genome_strand>
        <mrna_strand>GTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261561" ref_strand="+" ref_description="SGN-E261561 [cLEG-57-D7]">
      <seq>tataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaacgcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcacgaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctacagtcgattgtgactctgttgcccgcggagagagcagcttttccaatcaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29794" stop="28506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29494" g_stop="29188" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29120" g_stop="28806" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="622" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E261561" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29494" e_stop="29188"/>
          <exon e_start="29120" e_stop="28806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTC</genome_strand>
        <mrna_strand>TATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAC...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCACGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTACAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736161" ref_strand="+" ref_description="SGN-E736161 [LC04CD03]">
      <seq>ctaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctaaagtcgattgtgactctgttgcccgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30235" stop="28532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29935" g_stop="29858" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="148" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="526" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28832" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="815" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E736161" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29935" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGG</genome_strand>
        <mrna_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAAAGTCGATTGTGACTCTGTTGCCCGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720041" ref_strand="+" ref_description="SGN-E720041 [FC09CF02]">
      <seq>aatcggccgaattgaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcaaaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30227" stop="28606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29941" g_stop="29858" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="154" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="532" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28906" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="747" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E720041" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29941" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAAT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAAAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333920" ref_strand="+" ref_description="SGN-E333920 [cTOD-24-O24]">
      <seq>ctaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaagcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30235" stop="28738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29935" g_stop="29858" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="148" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="526" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="29038" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="609" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E333920" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29935" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="29038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTT</genome_strand>
        <mrna_strand>CTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAA...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245309" ref_strand="+" ref_description="SGN-E245309 [cLEF-44-F11]">
      <seq>caatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30228" stop="28745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29928" g_stop="29858" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="141" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="519" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="29045" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="595" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E245309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29928" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="29045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAG</genome_strand>
        <mrna_strand>CAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347801" ref_strand="+" ref_description="SGN-E347801 [cTOF-26-P13]">
      <seq>gacagacaaacttttctctatgtatcttatataataagacccctactctttattatatccacataaaagttttccgctctatgcactaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30320" stop="28755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30020" g_stop="29858" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="233" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="611" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="29055" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="677" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E347801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30020" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATC</genome_strand>
        <mrna_strand>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261329" ref_strand="+" ref_description="SGN-E261329 [cLEG-57-C9]">
      <seq>acaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29642" stop="28892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29342" g_stop="29192" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E261329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29342" e_stop="29192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGC</genome_strand>
        <mrna_strand>ACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331674" ref_strand="+" ref_description="SGN-E331674 [cTOD-7-M12]">
      <seq>taaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30234" stop="28900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29934" g_stop="29858" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="147" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29200" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="513" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E331674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29934" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATC</genome_strand>
        <mrna_strand>TAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255071" ref_strand="+" ref_description="SGN-E255071 [cLEG-31-O14]">
      <seq>gcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30099" stop="28900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29880" g_stop="29858" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="93" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29200" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="459" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E255071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29880" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATC</genome_strand>
        <mrna_strand>GCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246393" ref_strand="+" ref_description="SGN-E246393 [cLEF-52-H19]">
      <seq>tcgtgccgcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30211" stop="28902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29914" g_stop="29858" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="126" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29202" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="490" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E246393" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29914" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACA</genome_strand>
        <mrna_strand>TCGTGC-CGCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287481" ref_strand="+" ref_description="SGN-E287481 [cLES-9-A2]">
      <seq>gggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcgaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtgagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30084" stop="29102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29784" g_stop="29714" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29565" g_stop="29402" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="235" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E287481" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29784" e_stop="29714"/>
          <exon e_start="29565" e_stop="29402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAA</genome_strand>
        <mrna_strand>GGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCGAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTGAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347595" ref_strand="+" ref_description="SGN-E347595 [cTOF-26-O24]">
      <seq>gcttctcaaaacaaacgtttgccggtgcaaatagtccttcatgctctctatttcgatcaactaaagataaggagcggagcagcagatgatagtaataacaacatgcccgaagccatggcaacaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagaacggagttgctaaagatgaagatgtacatagcagatatacagaaaacaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcacacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35645" stop="36726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35945" g_stop="36489" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E347595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35945" e_stop="36489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253511" ref_strand="+" ref_description="SGN-E253511 [cLEG-24-E6]">
      <seq>tttttttttttttgatacatgaatatattaacataacaatataatcaaacaacataatcaatcaatcctttacagtacaaaatcaatcatagttttttcacacaacataaaactaaaattaaaccaaataatgtaaatagcttaagatatggaaaatcttcttctcctaggcttagtaagatctagagcagcatcatcaacaatactagaagtgtcctttgatccatgtttaaagggattgaatttgcctaatgttttggagacagaagagaagaatgttgtcttcttcagactcccttttgatgttccttgactagaatttgttgttttctgtatatctgctatgtacatcttcatctttagcaactccgttctcaaaacttcattttcctttacgagggaaacatcagcttgtaattgattccttgttgccatggcttcgggcatgttgttattactatcatctgctgctccgctccttatctttagttgatcgaaatagagagcatgaaggactatttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="36726" stop="35668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36493" g_stop="35968" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E253511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36493" e_stop="35968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTACAGTACAAAATCAATCATAGTTTTTTCACACAACATAAAACTAAAATTAAACCAAATAATGTAAATAGCTTAAGATATGGAAAATCTTCTTCTCCTAGGCTTAGTAAGATCTAGAGCAGCATCATCAACAATACTAGAAGTGTCCTTTGATCCATGTTTAAAGGGATTGAATTTGCCTAATGTTTTGGAGACAGAAGAGAAGAATGTTGTCTTCTTCAGACTCCCTTTTGATGTTCCTTGACTAGAATTTGTTGTTTTCTGTATATCTGCTATGTACATCTTCATCTTTAGCAACTCCGTTCTCAAAACTTCATTTTCCTTTACGAGGGAAACATCAGCTTGTAATTGATTCCTTGTTGCCATGGCTTCGGGCATGTTGTTATTACTATCATCTGCTGCTCCGCTCCTTATCTTTAGTTGATCGAAATAGAGAGCATGAAGGACTATTTGCACC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTGATACATGAATATATTAACATAACAATATAATCAAACAACATAATCAATCAATCCTTTACAGTACAAAATCAATCATAGTTTTTTCACACAACATAAAACTAAAATTAAACCAAATAATGTAAATAGCTTAAGATATGGAAAATCTTCTTCTCCTAGGCTTAGTAAGATCTAGAGCAGCATCATCAACAATACTAGAAGTGTCCTTTGATCCATGTTTAAAGGGATTGAATTTGCCTAATGTTTTGGAGACAGAAGAGAAGAATGTTGTCTTCTTCAGACTCCCTTTTGATGTTCCTTGACTAGAATTTGTTGTTTTCTGTATATCTGCTATGTACATCTTCATCTTTAGCAACTCCGTTCTCAAAACTTCATTTTCCTTTACGAGGGAAACATCAGCTTGTAATTGATTCCTTGTTGCCATGGCTTCGGGCATGTTGTTATTACTATCATCTGCTGCTCCGCTCCTTATCTTTAGTTGATCGAAATAGAGAGCATGAAGGACTATTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222191" ref_strand="+" ref_description="SGN-E222191 [cLEL-16-G23](-)">
      <seq>agcggaccaccacatgatagtaataacaacatgcccgaagccatggcaccaaggaatcaattacaagctgatgtttccctcgtaaaggaaaatgaagttttgagagcgcagttgctaaatatgaagatgtccatagcagatatccagaaagcaacaaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatctttctaagcctaggagaagaaaattttccatatcttaagctatttccattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgttctgtaaacgactgattgattatgttgtttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35717" stop="55655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36017" g_stop="36468" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E222191" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36017" e_stop="36468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGCGGACCACCACATGATAGTAATAACAACATGCCCGAAGCCATGGCACCAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAGCGCAGTTGCTAAATATGAAGATGTCCATAGCAGATATCCAGAAAGCAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTTCTAAGCCTAGGAGAAGAAAATTTTCCATATCTTAAGCTATTTCCATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTTCTGTAAACGACTGATTGATTATGTTGTTTGATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286216" ref_strand="+" ref_description="SGN-E286216 [cLES-11-E14]">
      <seq>tcgagttttttttttttttttttaaaagatgaaatcaatcttgatcaagtgtgatacatgaatatattaacataacaatataatcaaacaacataatcaatcaatcctttacagtacaaaatcaatcatagttttttcacacaacataaaactaaaattaaaccaaataatgtaaatagcttaagatatggaaaatcttcttctcctaggcttagtaagatctagagcagcatcatcaacaatactagaagtgtcctttgatccatgtttaaagggattgaatttgcctaatgttttggagacagaagagaagaatgttgtcttcttcagactcccttttgatgttccttgactagaatttgttgttttctgtatatctgctatgtacatcttcatctttagcaactccgttctcaaaacttcattttcctttacgagggaaacatcagcttgtaattgattccttgttgccatggcttcgggcatgttgttattactatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="55655" stop="35731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36532" g_stop="36031" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E286216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36532" e_stop="36031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTACAGTACAAAATCAATCATAGTTTTTTCACACAACATAAAACTAAAATTAAACCAAATAATGTAAATAGCTTAAGATATGGAAAATCTTCTTCTCCTAGGCTTAGTAAGATCTAGAGCAGCATCATCAACAATACTAGAAGTGTCCTTTGATCCATGTTTAAAGGGATTGAATTTGCCTAATGTTTTGGAGACAGAAGAGAAGAATGTTGTCTTCTTCAGACTCCCTTTTGATGTTCCTTGACTAGAATTTGTTGTTTTCTGTATATCTGCTATGTACATCTTCATCTTTAGCAACTCCGTTCTCAAAACTTCATTTTCCTTTACGAGGGAAACATCAGCTTGTAATTGATTCCTTGTTGCCATGGCTTCGGGCATGTTGTTATTACTATCA</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTTTAAAAGATGAAATCAATCTTGATCAAGTGTGATACATGAATATATTAACATAACAATATAATCAAACAACATAATCAATCAATCCTTTACAGTACAAAATCAATCATAGTTTTTTCACACAACATAAAACTAAAATTAAACCAAATAATGTAAATAGCTTAAGATATGGAAAATCTTCTTCTCCTAGGCTTAGTAAGATCTAGAGCAGCATCATCAACAATACTAGAAGTGTCCTTTGATCCATGTTTAAAGGGATTGAATTTGCCTAATGTTTTGGAGACAGAAGAGAAGAATGTTGTCTTCTTCAGACTCCCTTTTGATGTTCCTTGACTAGAATTTGTTGTTTTCTGTATATCTGCTATGTACATCTTCATCTTTAGCAACTCCGTTCTCAAAACTTCATTTTCCTTTACGAGGGAAACATCAGCTTGTAATTGATTCCTTGTTGCCATGGCTTCGGGCATGTTGTTATTACTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222504" ref_strand="+" ref_description="SGN-E222504 [cLEL-16-C18](-)">
      <seq>caaattctagtcaaggaacatcaaaagggagtctgaagaagacaacattcttctcttctgtctccaaaacattaggcaaattcaatccctttaaacatggatcaaaggacacttctagtattgttgatgatgctgctctagatcttactaagcctaggagaagaagattttccatatcttaagctatttacattatttggtttaattttagttttatgttgtgtgaaaaaactatgattgattttgtactgtaaaggattgattgattatgttgtttgattatattgttatgttaatatattcatgtatcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35871" stop="55655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36171" g_stop="36501" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E222504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36171" e_stop="36501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63835" stop="62561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63535" g_stop="62861" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63535" e_stop="62861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTT-TCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCTCACTATATGACAGATTTGAATTCAAGATCCTCATCACAA-TTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTACAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCATATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63835" stop="62834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63535" g_stop="63134" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63535" e_stop="63134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTT-TCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCTCACTATATGACAGATTTGAATTCAAGATCCTCATCACAATT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62841" stop="64118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63141" g_stop="63818" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63141" e_stop="63818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGAGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62843" stop="63996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63142" g_stop="63696" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63142" e_stop="63696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATCTGTCATATAGTGAGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62846" stop="63899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63146" g_stop="63599" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63146" e_stop="63599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCTGTCATATAGTGAGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62890" stop="64072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63190" g_stop="63772" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63190" e_stop="63772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63248" stop="64255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63548" g_stop="63955" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63548" e_stop="63955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGA-GAGTTTCTTGGTGATGAAACTTTATCTTGGTGCAATCAGGGCACTAGGGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63324" stop="64223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63624" g_stop="64103" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63624" e_stop="64103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGA-GAGTTTCTTGGTGATGAAACTTTATCTTGGTGCAATCAGGGCACTAGGGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCAAAGACAAAATTGATTGGTTACGCAAATGCAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254360" ref_strand="+" ref_description="SGN-E254360 [cLEG-27-G5]">
      <seq>tttttccattgaagcgtaaaacataaattagccccttctcctctttctccctcttctctgtgtgttttttttgaaacgagaaagataaaaggtattatcgcactcgattgcaacccatatttccccaaactcgccggcactcggctgagaccaaaacgacaaattggggaagaaaaccctccaagaaaacccacttcattctccaaacctacattcaagttacaagggatgaagagaactagcatcaaatctcgctccaaaggcacaatggagttgaagaatgttgtatctgaaaagaggaggtgaaattcttaaaactttgaaaacggctgcagatctgctttaaaaaggtaaaaaaaactttgataaagaagagttctttttgtgattcagattttaatgttgatgtaggttgacccttgccactcttaccaaatctttgatttgggcatgggagagagttaccgtgcttacgcctcagattgtagcaaaaagagatacacggaatatttttcctgttggtttaccaaggggtccacatggtgctacattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="73166" stop="70792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72866" g_stop="72574" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72573" i_stop="72440" i_length="134">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72439" g_stop="72342" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72341" i_stop="72240" i_length="102">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72239" g_stop="72191" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72190" i_stop="71201" i_length="990">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71200" g_stop="71091" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="552" r_length="110" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E254360" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72866" e_stop="72574"/>
          <exon e_start="72439" e_stop="72342"/>
          <exon e_start="72239" e_stop="72191"/>
          <exon e_start="71200" e_stop="71091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCTCTCTTCTC--TGTGTTTTTTTT-AAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCGTATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAAGCTACCTTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGATGAATGTTGTATCTGAAGAGTGTACGAATTTGGAAGACCACCATCTTCTTGTTCTTCCATAGTTGATGCTTAATCTTACTCTATTTGAAATCGTTTTGCTCTATACAAGAGATTTGAGAGTGTTGATCGAGTATTGTAGTTTAAACACTGCAGATTGGAGGTGAAATTTTCAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAGGTAATTTTGTCATACATTGATTTAGTTTATCTTATTATTGATGAATTTGTTATTTTCCTTTGGTGAATTGATTTATAGAAACTTATTTTGGTCAAAATTCAGATTTTAATGTTGATGTAGGTTAGCCTCTGCCACTCTTACCAAATCTTTGGTAAGTGAAAGCAGTAAACTGTTGTGCTTTTGATCGTTTCTGTCATATAAACATAATTTACAACCACTATATATTTAACAACTCTTGCACTCGTAGATTGAGAAAAGCTTCTAAGTTACGTTGTATTCTTACTTCTGTATAGGTATTTATTTTATGGCTGCTAATAATGCATACCAATTGGATCCCGGTCCACTTGATCCGTCTGTATTAAATGGAAAGCTCACTCATAGGTCACGAGATATATGGATAGGGAATGATGATATGATTTTGAACACAAGAAAATATGATGGGAAGTTTTGGGACCTAGTAAATGAGCATCCCATTCATCCACGAGTCCTAGATGTGATTAAACTATCTGGAATATATAGTGTTTATAGGTCTCATAGGCCTCTTATTGATCGTAGCTTAATCACCGCACTAGTTGAGAGATAGCCTCCTGAGACTCATACATTCCACTTTAGGACGGGTGAGAGTACAATCACTTTACCGGACGTGGAGATATTGTATGGCTTACCTGTGAAAGGTAATGCAGTAGTTGGGTATGAGCCACAGAGGTCTGTAGTGGATTGGAAAAATATTTGTCAAAGATTATTAGGTTTTAGTCCACAACCTCAAGACTTTAAACATAGTAGTCTCAAGGTTTCTGCGCTTAATGCACACTTGCGACTTCAACCACGATTACCCGACTTGGCAACACAGGATATGGTCAATGAGAAAGCTAGGTGTTATATGTTTTGGATGATTGTTGGTTTACTATTAGCAGACACATCTGGTGGTCTTTTAAAGCTTATGTACTTGCCTATGCTGGAGGATATCACTACAGTAGGGTCTTACAGTTGGGGTAGTGCAACCCTAGCATATTTGTATCGTTTTCTTTGTAAAGCCTCCCAAAGTAGCCAAAATGAGATTGCTGGATTCCTACCACTACTTCAGGTACACTCAATAATTACACTAAATTTTATCTAGTTTATAATTATCTATTATGTCCAGATTTGGGCATGGGAGAGAGTTACCGTCCTTACGCCTCAGATTGTAGTAAAAAGAGATACAAGAAATATTTTCCCTGTTGGTTTACCAAGGGGTCCACATGCTGCTAGATG</genome_strand>
        <mrna_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCCCTCTTCTCTGTGTGTTTTTTTTGAAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCATATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAACCTACATTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGAAGAATGTTGTATCTGAA-A......................................................................................................................................AGAGGAGGTGAAATTCTTAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAG......................................................................................................ATTTTAATGTTGATGTAGGTTGACCCTTGCCACTCTTACCAAATCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGCATGGGAGAGAGTTACCGTGCTTACGCCTCAGATTGTAGCAAAAAGAGATACACGGAATATTTTTCCTGTTGGTTTACCAAGGGGTCCACATGGTGCTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256299" ref_strand="+" ref_description="SGN-E256299 [cLEG-37-A3]">
      <seq>tttttccattgaagcgtaaaacataaattagccccttctcctctttctccctcttctctgtgttttttttttgaaacgagaaagataaaaggtattatcgcactcgattgcaacccatatttccccaaactcgccggcactcggctgagaccaaaacgacaaattggggaagaaaaccctccaagaaaacccacttcattctccaaacctacattcaagttacaagggatgaagagaactagcatcaaatctcgctccaaaggcacaatggagttgaagaatgttgtatctgaaaagaggaggtgaaatttttaaaactttgaaaacggctgcagatctgctttaaaaaggtaaaaaaaactttgataaagaagagttctttttgtgattcagattttaatgttgatgtaggttgacccttgccactcttaccaaatctttgatttgggcatgggagagagttaccgtccttacgcctcagattgtagcaaaaagagatacaaggaatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="73166" stop="70830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72866" g_stop="72574" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72573" i_stop="72440" i_length="134">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72439" g_stop="72342" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72341" i_stop="72240" i_length="102">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72239" g_stop="72191" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72190" i_stop="71201" i_length="990">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71200" g_stop="71129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="514" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E256299" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72866" e_stop="72574"/>
          <exon e_start="72439" e_stop="72342"/>
          <exon e_start="72239" e_stop="72191"/>
          <exon e_start="71200" e_stop="71129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCTCTCTTCTCTGTG--TTTTTTTT-AAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCGTATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAAGCTACCTTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGATGAATGTTGTATCTGAAGAGTGTACGAATTTGGAAGACCACCATCTTCTTGTTCTTCCATAGTTGATGCTTAATCTTACTCTATTTGAAATCGTTTTGCTCTATACAAGAGATTTGAGAGTGTTGATCGAGTATTGTAGTTTAAACACTGCAGATTGGAGGTGAAATTTTCAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAGGTAATTTTGTCATACATTGATTTAGTTTATCTTATTATTGATGAATTTGTTATTTTCCTTTGGTGAATTGATTTATAGAAACTTATTTTGGTCAAAATTCAGATTTTAATGTTGATGTAGGTTAGCCTCTGCCACTCTTACCAAATCTTTGGTAAGTGAAAGCAGTAAACTGTTGTGCTTTTGATCGTTTCTGTCATATAAACATAATTTACAACCACTATATATTTAACAACTCTTGCACTCGTAGATTGAGAAAAGCTTCTAAGTTACGTTGTATTCTTACTTCTGTATAGGTATTTATTTTATGGCTGCTAATAATGCATACCAATTGGATCCCGGTCCACTTGATCCGTCTGTATTAAATGGAAAGCTCACTCATAGGTCACGAGATATATGGATAGGGAATGATGATATGATTTTGAACACAAGAAAATATGATGGGAAGTTTTGGGACCTAGTAAATGAGCATCCCATTCATCCACGAGTCCTAGATGTGATTAAACTATCTGGAATATATAGTGTTTATAGGTCTCATAGGCCTCTTATTGATCGTAGCTTAATCACCGCACTAGTTGAGAGATAGCCTCCTGAGACTCATACATTCCACTTTAGGACGGGTGAGAGTACAATCACTTTACCGGACGTGGAGATATTGTATGGCTTACCTGTGAAAGGTAATGCAGTAGTTGGGTATGAGCCACAGAGGTCTGTAGTGGATTGGAAAAATATTTGTCAAAGATTATTAGGTTTTAGTCCACAACCTCAAGACTTTAAACATAGTAGTCTCAAGGTTTCTGCGCTTAATGCACACTTGCGACTTCAACCACGATTACCCGACTTGGCAACACAGGATATGGTCAATGAGAAAGCTAGGTGTTATATGTTTTGGATGATTGTTGGTTTACTATTAGCAGACACATCTGGTGGTCTTTTAAAGCTTATGTACTTGCCTATGCTGGAGGATATCACTACAGTAGGGTCTTACAGTTGGGGTAGTGCAACCCTAGCATATTTGTATCGTTTTCTTTGTAAAGCCTCCCAAAGTAGCCAAAATGAGATTGCTGGATTCCTACCACTACTTCAGGTACACTCAATAATTACACTAAATTTTATCTAGTTTATAATTATCTATTATGTCCAGATTTGGGCATGGGAGAGAGTTACCGTCCTTACGCCTCAGATTGTAGTAAAAAGAGATACAAGAAATATTTTC</genome_strand>
        <mrna_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCCCTCTTCTCTGTGTTTTTTTTTTGAAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCATATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAACCTACATTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGAAGAATGTTGTATCTGAA-A......................................................................................................................................AGAGGAGGTGAAATTTTTAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAG......................................................................................................ATTTTAATGTTGATGTAGGTTGACCCTTGCCACTCTTACCAAATCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGCATGGGAGAGAGTTACCGTCCTTACGCCTCAGATTGTAGCAAAAAGAGATACAAGGAATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260344" ref_strand="+" ref_description="SGN-E260344 [cLEG-53-F5]">
      <seq>tttttccattgaagcgtaaaacataaattagccccttctcctctttctccctcttctctgtgttttttttttgaaacgagaaagataaaaggtattatcgcactcgattgcaacccatatttccccaaactcgccggcactcggctgagaccaaaacgacaaattggggaagaaaaccctccaagaaaacccacttcattctccaaacctacattcaagttacaagggatgaagagaactagcatcaaatctcgctccaaaggcacaatggagttgaagaatgttgtatctgaaaagaggaggtgaaatttttaaaactttgaaaacggctgcagatctgctttaaaaaggtaaaaaaaactttgataaagaagagttctttttgtgattcagattttaatgttgatgtaggttgacccctgccactcttaccaaatctttgatttgggcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="73166" stop="71880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72866" g_stop="72574" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72573" i_stop="72440" i_length="134">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72439" g_stop="72342" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72341" i_stop="72240" i_length="102">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72239" g_stop="72191" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="442" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E260344" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72866" e_stop="72574"/>
          <exon e_start="72439" e_stop="72342"/>
          <exon e_start="72239" e_stop="72191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCTCTCTTCTCTGTG--TTTTTTTT-AAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCGTATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAAGCTACCTTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGATGAATGTTGTATCTGAAGAGTGTACGAATTTGGAAGACCACCATCTTCTTGTTCTTCCATAGTTGATGCTTAATCTTACTCTATTTGAAATCGTTTTGCTCTATACAAGAGATTTGAGAGTGTTGATCGAGTATTGTAGTTTAAACACTGCAGATTGGAGGTGAAATTTTCAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAGGTAATTTTGTCATACATTGATTTAGTTTATCTTATTATTGATGAATTTGTTATTTTCCTTTGGTGAATTGATTTATAGAAACTTATTTTGGTCAAAATTCAGATTTTAATGTTGATGTAGGTTAGCCTCTGCCACTCTTACCAAATCTTTG</genome_strand>
        <mrna_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCCCTCTTCTCTGTGTTTTTTTTTTGAAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCATATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAACCTACATTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGAAGAATGTTGTATCTGAA-A......................................................................................................................................AGAGGAGGTGAAATTTTTAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAG......................................................................................................ATTTTAATGTTGATGTAGGTTGACCCCTGCCACTCTTACCAAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375459" ref_strand="+" ref_description="SGN-E375459 [TUS-34-F16]">
      <seq>tttttccattgaagcgtaaaacataaattagccccttctcctctttctccctcttctctgtgttttttttttgaaacgagaaagataaaaggtattatcgcactcgattgcaacccatatttccccaaactcgccggcactcggctgagaccaaaacgacacattggggaagacaaccctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="73166" stop="72387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72866" g_stop="72687" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E375459" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72866" e_stop="72687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCTCTCTTCTCTGTG--TTTTTTTT-AAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCGTATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCA</genome_strand>
        <mrna_strand>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCCCTCTTCTCTGTGTTTTTTTTTTGAAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCATATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACACATTGGGGAAGACAACCCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297430" ref_strand="+" ref_description="SGN-E297430 [cLEW-13-B20]">
      <seq>acaaatttgttaacagaaatacaaagaaaatacctcaatgaggacgaaagcagagcttgttttcattccttctccggcagcaggtcacctcatctctgccgttgaaattgcaaaactgattctcaacagagatgagaggctctgtatctctatcctcattatgaagcttccaatggatttcggtgttcaatcttacatcgaatcactctcatctataccccgtttgcagatcgttgacatcactgttgacgaaaatactatcgctggattcatgtcgaactaagagaccctcttcacgaacttcgttcgaagtcataaaccaaaagtaaaagattttttaaataactccagcttttctagatctgattctcgtcttgctggcttcgttctcgacatgttctgcacgtcaatgatagacgtagctaatgaattttgtgttcctagttacattttcttcacctcaaatgctgctttccttgccctctgttttcatttcgagtctctgaaaaaggagcatcacgtcgatacctccaaatgcaaaaattcaaatgaagaattaacaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="74106" stop="75271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74406" g_stop="74971" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E297430" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74406" e_stop="74971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTTGTTAACAGAAATACAAAGAAAATACCTCAATGAGGACGAAAGCAGAGCTTGTTTTCATTCCTTCTCCGGCAGCAGGTCACCTCATCTCTGCCGTTGAAATTGCAAAACTGATTCTCAACAGAGATGAGAGGCTCTGTATCTCTATCCTCATTATGAAGCTTCCAATGGATTTCGGTGTTCAATCTTACATCGAATCACTCTCATCTATACCCCGTTTGCAGTTCGTTGACATCACTGTTGACGAAAATACTATTGCTGGATTCATGTCAAATAAGGAGACCTTCTTCACGAACTTCGTTCGAAGTCATAAACCAAAAGTAAAAGATTTTTTAAATAACTCCAGCTTTTCTAGATCTGATTCTCGTCTTGCTGGCTTCGTTCTCGACATGTTCTGCACGTCAATGATAGACGTAGCTAATGAATTTTGTGTTCCTAGTTACATTTTCTTCACCTCAAATGCTGCTTTCCTTGCCCTCTGTTTTCATTTCGAGTCTCTGAAAAAGGAGCATCACGTCGATACCTCCAAATGCAAAAATTCAAATGAAGAATTAACAATCC</genome_strand>
        <mrna_strand>ACAAATTTGTTAACAGAAATACAAAGAAAATACCTCAATGAGGACGAAAGCAGAGCTTGTTTTCATTCCTTCTCCGGCAGCAGGTCACCTCATCTCTGCCGTTGAAATTGCAAAACTGATTCTCAACAGAGATGAGAGGCTCTGTATCTCTATCCTCATTATGAAGCTTCCAATGGATTTCGGTGTTCAATCTTACATCGAATCACTCTCATCTATACCCCGTTTGCAGATCGTTGACATCACTGTTGACGAAAATACTATCGCTGGATTCATGTCGAACTAAGAGACCCTCTTCACGAACTTCGTTCGAAGTCATAAACCAAAAGTAAAAGATTTTTTAAATAACTCCAGCTTTTCTAGATCTGATTCTCGTCTTGCTGGCTTCGTTCTCGACATGTTCTGCACGTCAATGATAGACGTAGCTAATGAATTTTGTGTTCCTAGTTACATTTTCTTCACCTCAAATGCTGCTTTCCTTGCCCTCTGTTTTCATTTCGAGTCTCTGAAAAAGGAGCATCACGTCGATACCTCCAAATGCAAAAATTCAAATGAAGAATTAACAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299503" ref_strand="+" ref_description="SGN-E299503 [cLEW-20-A21]">
      <seq>gaggacgaaagcagagcttgttttcattccttctccggcagcaggtcacctcatctctgccgttgaaattgcaaaactgattctcaacagagatgagaggctctgtatctctatcctcattatgaagcttccaatggatttcggtgttcaatcttacatcgaatcactctcatctataccccgtttgcagttcgttgacatcactgttgacgaaaatactattgctggattcatgtcaaataaggagaccttcttcacgaacttcgttcgaagtcataaaccaaaagtaaaagattttttaaataactccagcttttctagatctgattctcgtcttgctggcttcgttctcgacatgttctgcacgtcaatgatagacgtagctaatgaattttgtgttcctagttacattttcttcacctcaaatgctgctttccttgccctctgttttcatttcgagtctctgaaaaaggagcatcacgtcgatacctccaaatgcaaaaattcaaatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="74145" stop="75260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74445" g_stop="74960" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E299503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74445" e_stop="74960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACGAAAGCAGAGCTTGTTTTCATTCCTTCTCCGGCAGCAGGTCACCTCATCTCTGCCGTTGAAATTGCAAAACTGATTCTCAACAGAGATGAGAGGCTCTGTATCTCTATCCTCATTATGAAGCTTCCAATGGATTTCGGTGTTCAATCTTACATCGAATCACTCTCATCTATACCCCGTTTGCAGTTCGTTGACATCACTGTTGACGAAAATACTATTGCTGGATTCATGTCAAATAAGGAGACCTTCTTCACGAACTTCGTTCGAAGTCATAAACCAAAAGTAAAAGATTTTTTAAATAACTCCAGCTTTTCTAGATCTGATTCTCGTCTTGCTGGCTTCGTTCTCGACATGTTCTGCACGTCAATGATAGACGTAGCTAATGAATTTTGTGTTCCTAGTTACATTTTCTTCACCTCAAATGCTGCTTTCCTTGCCCTCTGTTTTCATTTCGAGTCTCTGAAAAAGGAGCATCACGTCGATACCTCCAAATGCAAAAATTCAAATGAAGA</genome_strand>
        <mrna_strand>GAGGACGAAAGCAGAGCTTGTTTTCATTCCTTCTCCGGCAGCAGGTCACCTCATCTCTGCCGTTGAAATTGCAAAACTGATTCTCAACAGAGATGAGAGGCTCTGTATCTCTATCCTCATTATGAAGCTTCCAATGGATTTCGGTGTTCAATCTTACATCGAATCACTCTCATCTATACCCCGTTTGCAGTTCGTTGACATCACTGTTGACGAAAATACTATTGCTGGATTCATGTCAAATAAGGAGACCTTCTTCACGAACTTCGTTCGAAGTCATAAACCAAAAGTAAAAGATTTTTTAAATAACTCCAGCTTTTCTAGATCTGATTCTCGTCTTGCTGGCTTCGTTCTCGACATGTTCTGCACGTCAATGATAGACGTAGCTAATGAATTTTGTGTTCCTAGTTACATTTTCTTCACCTCAAATGCTGCTTTCCTTGCCCTCTGTTTTCATTTCGAGTCTCTGAAAAAGGAGCATCACGTCGATACCTCCAAATGCAAAAATTCAAATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="82459" stop="81273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82159" g_stop="81573" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82159" e_stop="81573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGAAAGGCCAATGTTGTGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGTGCTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAAATCCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGTGACAAAGTATTGAGAGGAGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTATTGCGGATCGGAGGCAAAATTTGTGTGCCCAAGACAGGAGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTA-TTGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGGCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="83673" stop="84701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83973" g_stop="84401" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83973" e_stop="84401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTTAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCTAGATGAGGCACCCTGAAACTGACCTGATATATACGAGCTCTTTTAGGGTCCCCAAACTTCTCTCTCTCCATCAATTTCGCCTCTTTGGCGACGCTCACAATAGACTGGAAAGAAGTCCCCTCCCTACATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAATGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCG--AAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTG--ATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAGT-CCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="84520" stop="85422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84820" g_stop="85122" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84820" e_stop="85122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCTGAGCCCCCTCTCTAGTACGGGAGTCATATGGTGTGGTAATTTCACCACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTGTGACTATGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGAGGTTTGGTAGAGACCTCTCTAGCAAGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACTACTAGCACGACCTCTTGCTCGAGATCTACCCCTACCCCTAGTTGGGGCCTCAACAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251000" ref_strand="+" ref_description="SGN-E251000 [cLEG-17-K9]">
      <seq>tctgctctctcaaatacagagcaatggagaccaaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctgtcgaattcgccaaactcctccttgctacaaatgaacgactatgcatttctcttctcgtcatgaaacatcctgctgattttggtgttcaatcttatctccaatcactcccttctctgtcccgttttcgcttcgttgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97421" stop="98586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97721" g_stop="98286" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E251000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97721" e_stop="98286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTCTCTCAAATACAGAGCAATGGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAAT</genome_strand>
        <mrna_strand>TCTGCTCTCTCAAATACAGAGCAATGGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320894" ref_strand="+" ref_description="SGN-E320894 [cTOB-13-A11]">
      <seq>gagcaatggagaccaaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctgtcgaattcgccaaactcctccttgctacaaatgaacgactatgcatttctcttctcgtcatgaaacatcctgctgattttggtgttcaatcttatctccaatcactcccttctctgtcccgttttcgcttcgttgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctgctaaagttttacctagaccagctaaagcaattacaccaagctcgactttgtactacgatgggattcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97439" stop="98665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97739" g_stop="98365" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E320894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97739" e_stop="98365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATGGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTC</genome_strand>
        <mrna_strand>GAGCAATGGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727056" ref_strand="+" ref_description="SGN-E727056 [LA13CD09]">
      <seq>ggagaccaaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctgtcgaattcgccaaactcctccttgctacaaatgaacgactatgcatttctcttctcgtcatgaaacatcctgctgattttggtgttcaatcttatctccaatcactcccttctctgtcccgttttcgcttcgttgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctgctaaagttttacctagaccagctaaagcaattacaccaagctcgactttgtactacgatgggattcgtcgttttagagagaccaaaggtattgttatcaatacgtttgcggagcttgaaccttttgctcttcagtcattgtctgatgctaaaatggctcctccgatttatcccattcatgctgtattcaattcggatgataatgaggaaaaacaggaaatagaaagtattgtggagtggttagataatcagccaaactcatctgtagtgttcttgtgctttggaaccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97446" stop="98887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97746" g_stop="98587" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E727056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97746" e_stop="98587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGATAATCAGCCAAACTCATCTGTAGTGTTCTTGTGCTTTGGAACCATGG</genome_strand>
        <mrna_strand>GGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGATAATCAGCCAAACTCATCTGTAGTGTTCTTGTGCTTTGGAACCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347529" ref_strand="+" ref_description="SGN-E347529 [cTOF-26-G11]">
      <seq>ggagaccaaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctgtcgaattcgccaaactcctccttgctacaaatgaacgactatgcatttctcttctcgtcatgaaacatcctgctgattttggtgttcaatcttatctccaatcactcccttctctgtcccgttttcgcttcgttgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctgctaaagttttacctagaccagctaaagcaattacaccaagctcgactntgtactacgatgggattcgtcgttttagagagaccaaaggtattgttatcaatacgtttgcggagcttgaaccttttgctcttcagtcattgtctgatgctaaaatggctcctccgatttatcccattcatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97446" stop="98780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97746" g_stop="98480" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E347529" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97746" e_stop="98480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGT</genome_strand>
        <mrna_strand>GGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTNTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366607" ref_strand="+" ref_description="SGN-E366607 [cLPT-13-L14]">
      <seq>accaaagtagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctatggaattcgccaaactccttcttgctacgaatgaacgactatgcatttcccttctcatcatgaaacatcctgctgattttggtgttcaaccttatcttcaatcactcccttctctgtcccgttttcgcttcgtcgatgtttcaatagacccgaaactagttgttcaacttttgtctaacaaagacagattcttatacgatttcattgatggtcacaaactcaaggtaagtgaatttgttactagtaataattccagtccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatttccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgctttcctatccctgtcctttcattctgaagctttgaggaataacttcaagtttgattattccgagtctgatgaggaattgtccattctcggatttaagaatccatatcctgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97450" stop="98601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97750" g_stop="98301" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E366607" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97750" e_stop="98301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAA</genome_strand>
        <mrna_strand>ACCAAAGTAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTATGGAATTCGCCAAACTCCTTCTTGCTACGAATGAACGACTATGCATTTCCCTTCTCATCATGAAACATCCTGCTGATTTTGGTGTTCAACCTTATCTTCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTCGATGTTTCAATAGACCCGAAACTAGTTGTTCAACTTTTGTCTAACAAAGACAGATTCTTATACGATTTCATTGATGGTCACAAACTCAAGGTAAGTGAATTTGTTACTAGTAATAATTCCAGTCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATTTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTCCTATCCCTGTCCTTTCATTCTGAAGCTTTGAGGAATAACTTCAAGTTTGATTATTCCGAGTCTGATGAGGAATTGTCCATTCTCGGATTTAAGAATCCATATCCTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365744" ref_strand="+" ref_description="SGN-E365744 [cLPT-8-F6]">
      <seq>caaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctatggaattcgccaaactccttcttgctacgaatgaacgactatgcatttcccttctcatcatgaaacatcctgctgattttggtgttcaaccttatcttcaatcactcccttctctgtcccgttttcgcttcgtcgatgtttcaatagacccgaaactagttgttcaacttttgtctaacaaagacagattcttatacgatttcattgatggtcacaaactcaaggtaagtgaatttgttactagtaataattccagtccttcccaatttggctctactcagctagctggctttgttcttgacatgttctgcatttccatgattgatgtagctaatgaattttgtgttcctagttatattatctttacttctgctgctgctgtcctatccctgtcctttcattttgaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97452" stop="98518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97752" g_stop="98218" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E365744" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97752" e_stop="98218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTT</genome_strand>
        <mrna_strand>CAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTATGGAATTCGCCAAACTCCTTCTTGCTACGAATGAACGACTATGCATTTCCCTTCTCATCATGAAACATCCTGCTGATTTTGGTGTTCAACCTTATCTTCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTCGATGTTTCAATAGACCCGAAACTAGTTGTTCAACTTTTGTCTAACAAAGACAGATTCTTATACGATTTCATTGATGGTCACAAACTCAAGGTAAGTGAATTTGTTACTAGTAATAATTCCAGTCCTTCCCAATTTGGCTCTACTCAGCTAGCTGGCTTTGTTCTTGACATGTTCTGCATTTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTATCTTTACTTCTGCTGCTGCTGTCCTATCCCTGTCCTTTCATTTTGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365818" ref_strand="+" ref_description="SGN-E365818 [cLPT-8-G4]">
      <seq>caaagcagagcttgttttcattccatcgccgggattgggtcacgtcgcttccgctatggaattcgccaaactccttcttgctacgaatgaacgactatgcatttcccttctcatcatgaaacatcctgctgattttggtgttcaaccttatcttcaatcactcccttctctgtcccgatttcgcttcggcgatggttcaatagacccgaaactagttgttcaacttttgtctaacaaagacagattcttatacgatttcattgatgggcacaaactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97452" stop="98330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97752" g_stop="98030" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E365818" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97752" e_stop="98030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAA</genome_strand>
        <mrna_strand>CAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTATGGAATTCGCCAAACTCCTTCTTGCTACGAATGAACGACTATGCATTTCCCTTCTCATCATGAAACATCCTGCTGATTTTGGTGTTCAACCTTATCTTCAATCACTCCCTTCTCTGTCCCGATTTCGCTTCGGCGATGGTTCAATAGACCCGAAACTAGTTGTTCAACTTTTGTCTAACAAAGACAGATTCTTATACGATTTCATTGATGGGCACAAACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254380" ref_strand="+" ref_description="SGN-E254380 [cLEG-27-O1]">
      <seq>tgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctgctaaagttttacctagaccagctaaagcaattacaccaagctcgactttgtactacgatgggattcgtcgttttagagagaccaaaggtattgttatcaatacgtttgcggagcttgaaccttttgctcttcagtcattgtctgatgctaaaatggctcctccgatttatcccattcatgctgtattcaattcggatgataatgaggaaaaacaggaaatagaaagtattgtggagtggttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97641" stop="98841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97941" g_stop="98541" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E254380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97941" e_stop="98541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGAT</genome_strand>
        <mrna_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252062" ref_strand="+" ref_description="SGN-E252062 [cLEG-8-N19]">
      <seq>tgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctagcctttctaagttttacctagaccagctaaagcaattacaccaagctcgactttgtactacgatgggattcggcggtttagagagaccaaaggtattgttatcaatacgttggcggagcttgaaccttttgctcttcagtcattgtctgatgctaaaatggctcctccgatttatcccattcatgctgtattcaattcggatgataatgaggaaaaacaggaaatagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97641" stop="98822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97941" g_stop="98522" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E252062" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97941" e_stop="98522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCT-G-C--T-AAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAG</genome_strand>
        <mrna_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTAGCCTTTCTAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGGCGGTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTGGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255178" ref_strand="+" ref_description="SGN-E255178 [cLEG-31-E20]">
      <seq>tgatgtttcaattgacccgaaattagttgttccacttttgtctaacaaggacagattcttatacgatttcattgatggtcacaaacacaaggtaagtgaatttgttactagtaataattccaccccttcccaatttggctctactcagcttgctggctttgttcttgacatgttctgcatctccatgattgatgtagctaatgaattttgtgttcctagttatattttctttacttctgctgctgcttttctagccctgtcctttcattttgaagctttgaggaataacttcaagttcgattattccgagtctgatgaggaattatcgattctcggatttaaaaatccgtatcctgctaaagttttacctagaccagctaaagcaattacaccaagctcgactttgtactacgatgggattcgtcgttttagagagaccaaaggtattgttatcaatacgtttgcggagcttgaaccttttgctcttcagtcattgtctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="97641" stop="98744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97941" g_stop="98444" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E255178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97941" e_stop="98444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGC</genome_strand>
        <mrna_strand>TGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250720" ref_strand="+" ref_description="SGN-E250720 [cLEG-7-K10]">
      <seq>tcagatgataatgaggaaaaacaggaaatagaaagtattgtggagtggttagataatgagccaaactcatctgtagtgttcttgtgctttggaaccatgggtagttttgaacctgagcaggtaaaggagatagcaattgcgttagagcatagtgggcaccggttcttgtggtctttacgaaggcctccaccaaaggggaaaatagaaatgccaagcaattatgacaattcggaggaagtgctgcctgaagggttcttggagaggacaaaaggaattgggaaactggtaggatgggcaccacaagtgactgtactttcacatcctgcggtgggggtattcgtgtcacattgtggatggaattcgacaatggagagtgtgtgttgtggggtgcctattgctgcttggccgttgtatgctgaacaacagatgaatgcgtttttgttggttaaggaattgggtttggcagtggagattcggatggactatgtgaaggactttgaggggaaaaatccagttgatatagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="98188" stop="99315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98488" g_stop="99015" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E250720" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98488" e_stop="99015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGATAATCAGCCAAACTCATCTGTAGTGTTCTTGTGCTTTGGAACCATGGGTAGTTTTGAACCTGAGCAGGTAAAGGAGATAGCAATTGCGTTAGAGCATAGTGGGCACCGGTTCTTGTGGTCTTTACGAAGGCCTCCACCAAAGGGGAAAATAGAAATGCCAAGCAATTATGACAATTCGGAGGAAGTGCTGCCTGAAGGGTTCTTGGAGAGGACAAAAGGAATTGGGAAACTGGTAGGATGGGCACCACAAGTGACTGTACTTTCACATCCTGCGGTGGGGGTATTCGTGTCACATTGTGGATGGAATTCGACAATGGAGAGTGTGTGTTGTGGGGTGCCTATTGCTGCTTGGCCGTTGTATGCTGAACAACAGATGAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACT</genome_strand>
        <mrna_strand>TCAGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGATAATGAGCCAAACTCATCTGTAGTGTTCTTGTGCTTTGGAACCATGGGTAGTTTTGAACCTGAGCAGGTAAAGGAGATAGCAATTGCGTTAGAGCATAGTGGGCACCGGTTCTTGTGGTCTTTACGAAGGCCTCCACCAAAGGGGAAAATAGAAATGCCAAGCAATTATGACAATTCGGAGGAAGTGCTGCCTGAAGGGTTCTTGGAGAGGACAAAAGGAATTGGGAAACTGGTAGGATGGGCACCACAAGTGACTGTACTTTCACATCCTGCGGTGGGGGTATTCGTGTCACATTGTGGATGGAATTCGACAATGGAGAGTGTGTGTTGTGGGGTGCCTATTGCTGCTTGGCCGTTGTATGCTGAACAACAGATGAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692544" ref_strand="-" ref_description="SGN-E692544 [LH_Ea08P22]">
      <seq>tttgccactttcacatcctgcggtgggggtattcgtgtcacattgtggatggaattcgacaatggagagtgtgtgttgtggggtgcctattgctgcttggcctttgtatgctgaacaacagatgaatgcgtttttgttggttaaggaattgggattggcagtggagattcggatggactatgtcaaggacttcgaggggaaaaatccagttgatatagttactgctgaggaaattgaaggcgccatacagaagcttatggcgaacggtgaagagaatgaagtgaggaatagagtgaaggaaatgcgagagaagagcagaaaagccatggaagaaggcggatcatcttatacctctttacgacttctaattgacgatttcatcagcaacatttcctgaagaatttccgcaaaaagatcacttcagcaatggcaggtttttcactggatgctcagaacataaacttttaaatgcattatgatcaagggttgatatttgttgttgttgcatatttttagtgtaattaaagttagtattggcagttcatgccttgcaatctgtcatgcacagtcaaaagatattttccttgatcataatttttcaactcctttgtaaatatttggatttttaagtattgtggcttactgttgtttctaaatgtataaattttatttcaaagatatcaaattctatgtctgaatcccatcaaccattaataagtttgaccctcaaaaaaaaaaaaaaaaaaaaaaaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="98499" stop="99809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98794" g_stop="99509" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="753"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E692544" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692544" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98794" e_stop="99509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTG-TACTTTCACATCCTGCGGTGGGGGTATTCGTGTCACATTGTGGATGGAATTCGACAATGGAGAGTGTGTGTTGTGGGGTGCCTATTGCTGCTTGGCCGTTGTATGCTGAACAACAGATGAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACTGCTGAGGAAATTGAAGGCGCCATACAGAAGCTTATGGAGAATGGTGAAGAGAATGAAGTGAGGAAAAGAGTGAAGGAAATGCGAGAGAAGAGCAGAAAAGCCATGGAAGAAGGCGGATCGTCTTATACCTCTTTACGACTTCTAATTGACGATTTCATCAGCAACATCTCCTGAAAAATTTCCGCAAAAAGAT--CTTCAGCAATGGTAGGTTTTTCACTGGATGCTCAGAACATAAACTTTTAAATGCATTATGACCAA-AGTT-TTCTATGTTGATATTTGTTGTTGTT-GCATATTTTTAG-T-GTAATTATAGTT-A-GTATTGGCA-GT-TCATGCGCAGTCAAAAGATATTTTCCTTGATCATAATTTTTCAACTATTTTGTAAATATTTGGATTTTTAAGTATTGTGGCTTACTGTAGTTTCTAAATGTATAAATTTTATTTCAATGATATCAAATTCTATGTCTGAATCACATCAAACATTAATAAGTTTGACCCTC</genome_strand>
        <mrna_strand>TTTGCCACTTTCACATCCTGCGGTGGGGGTATTCGTGTCACATTGTGGATGGAATTCGACAATGGAGAGTGTGTGTTGTGGGGTGCCTATTGCTGCTTGGCCTTTGTATGCTGAACAACAGATGAATGCGTTTTTGTTGGTTAAGGAATTGGGATTGGCAGTGGAGATTCGGATGGACTATGTCAAGGACTTCGAGGGGAAAAATCCAGTTGATATAGTTACTGCTGAGGAAATTGAAGGCGCCATACAGAAGCTTATGGCGAACGGTGAAGAGAATGAAGTGAGGAATAGAGTGAAGGAAATGCGAGAGAAGAGCAGAAAAGCCATGGAAGAAGGCGGATCATCTTATACCTCTTTACGACTTCTAATTGACGATTTCATCAGCAACATTTCCTGAAGAATTTCCGCAAAAAGATCACTTCAGCAATGGCAGGTTTTTCACTGGATGCTCAGAACATAAACTTTTAAATGCATTATGATCAAGGGTTGATATTTGTTGTTGTTGCATATTTTTAGTGTAATTAAAGTTAGTATTGGCAGTTCATGCCTTGCAATCTGTCATGCACAGTCAAAAGATATTTTCCTTGATCATAATTTTTCAACTCCTTTGTAAATATTTGGATTTTTAAGTATTGTGGCTTACTGTTGTTTCTAAATGTATAAATTTTATTTCAAAGATATCAAATTCTATGTCTGAATCCCATCAACCATTAATAAGTTTGACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225560" ref_strand="+" ref_description="SGN-E225560 [cLEL-17-E4](-)">
      <seq>gaatgcgtttttgttggttaaggaattgggtttggcagtggagattcggatggactatgtgaaggactttgaggggaaaaatccagttgatatagttactgctgaggaaattgaaggcgccatacagaagcttatggagaatggtgaagagaatgaagtgaggaaaagagtgaaggaaatgcgagagaagagcagaaaagccatggaagaaggcggatcgtcttatacctctttacgacttctaattgacgatttcatcagcaacatctcctgaaaaatttccgcaaaaagatcttcagcaatggtaggtttttcactggatgctcagaacataaacttttaaatgcattatgaccaaagttttctatgttgatatttgttgttgttgcatatttttagtgtaattatagttagtattggcagttcatgcgcagtcaaaagatattttccttgatcataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="+" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="98616" stop="99675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98916" g_stop="99374" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="477"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="+" ref_id="SGN-E225560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98916" e_stop="99374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACTGCTGAGGAAATTGAAGGCGCCATACAGAAGCTTATGGAGAATGGTGAAGAGAATGAAGTGAGGAAAAGAGTGAAGGAAATGCGAGAGAAGAGCAGAAAAGCCATGGAAGAAGGCGGATCGTCTTATACCTCTTTACGACTTCTAATTGACGATTTCATCAGCAACATCTCCTGAAAAATTTCCGCAAAAAGATCTTCAGCAATGGTAGGTTTTTCACTGGATGCTCAGAACATAAACTTTTAAATGCATTATGACCAAAGTTTTCTATGTTGATATTTGTTGTTGTTGCATATTTTTAGTGTAATTATAGTTAGTATTGGCAGTTCATGCGCAGTCAAAAGATATTTTCCTTGATCATA</genome_strand>
        <mrna_strand>GAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACTGCTGAGGAAATTGAAGGCGCCATACAGAAGCTTATGGAGAATGGTGAAGAGAATGAAGTGAGGAAAAGAGTGAAGGAAATGCGAGAGAAGAGCAGAAAAGCCATGGAAGAAGGCGGATCGTCTTATACCTCTTTACGACTTCTAATTGACGATTTCATCAGCAACATCTCCTGAAAAATTTCCGCAAAAAGATCTTCAGCAATGGTAGGTTTTTCACTGGATGCTCAGAACATAAACTTTTAAATGCATTATGACCAAAGTTTTCTATGTTGATATTTGTTGTTGTTGCATATTTTTAGTGTAATTATAGTTAGTATTGGCAGTTCATGCGCAGTCAAAAGATATTTTCCTTGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543421" ref_strand="+" ref_description="SGN-E543421 [TUS-65-D17](-)">
      <seq>tgcctgaggggttcttgcaaaggacggaagcaattgggaaggtgataggatgggcaccccaggtggctatcttgagtcatgatgctgtaggaggctttgtgtcacactgtgggtggaattcgactttagagagcatgtggttcggagtaccactggcaacttggccaatctattcggagcagcaagcgaatgcatttcaattggtgaaggatttagagatagcagtggagattaagatggattataggaaggatctcagagggaccgaatcgaatgttatagtaaaagcagaggagatagagaaagcaataaagcagctgatggagcctgaaaatgaaataaggttgaaagtgaaaggcatgaaggaaaagagcagattggtgctcaaagaaggtggatcttcctacaatgctgttggacattttatcgaacaagtgatggacatcacaaattgagaaacaatctttaaaacagcgatataattattcgaaaacaataaaatttcttctacagttcgatttggtcttcttctagaccactgcattcttattttagttattatgtagttctcatgtaaaaattttcagtccaagagtactgtattaaagtgggagtacgagggtcaaacttattaatgtttgatgtgattcagacatagaatttgatatcattgaaataaaatttatacatttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="100426" stop="99125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100126" g_stop="99425" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E543421" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100126" e_stop="99425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGAGGGGTTCTTGCAAAGGACGGAAGCAATTGGGAAGGTGATAGGATGGGCACCCCAGGTGGCTATCTTGAGTCATGATGCTGTAGGAGGCTTTGTGTCACACTGTGGGTGGAATTCGACTTTAGAGAGCATGTGGTTCGGAGTACCACTGGCAACTTGGCCAATCTATTCGGAGCAGCAAGCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAACTACA</genome_strand>
        <mrna_strand>TGCCTGAGGGGTTCTTGCAAAGGACGGAAGCAATTGGGAAGGTGATAGGATGGGCACCCCAGGTGGCTATCTTGAGTCATGATGCTGTAGGAGGCTTTGTGTCACACTGTGGGTGGAATTCGACTTTAGAGAGCATGTGGTTCGGAGTACCACTGGCAACTTGGCCAATCTATTCGGAGCAGCAAGCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393895" ref_strand="+" ref_description="SGN-E393895 [TUS-14-E6](-)">
      <seq>tttcggagcaggcaagcgaatgcatttcaattgggaaaggatttagtgatagcagtggagattaagatggattataggaagcctctcagcgggaccgaatcgaatgttatagtaaaagcagaggagatagagaaagcaataaagcagctgatggagcctgaaaatgaaataaggttgaaagtgaaaggcatgaaggaaaagagcagattggtgctcaaagaaggtggatcttcctacaatgctgttggacattttatcgaacaagtgatggacatcacaaattgagaaacaatctttaaaacagcgatataattattcgaaaacaataaaattttttttacagttcgatttggtttttttttagaccactgcattcttattttagttattatgtagttttcatgtaaaaattttcagtccaagagtactgtattaaagtgggagtacgagggtcaaacttattaatgtttgatgtgattcagacatagaatttgaaatcattgaaataaaatttatacatttagaaactaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="100254" stop="99121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99955" g_stop="99425" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="556"/>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E393895" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99955" e_stop="99425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGAGCA-GCAAGCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAACTACA</genome_strand>
        <mrna_strand>TTTCGGAGCAGGCAAGCGAATGCATTTCAATTGGGAAAGGATTTAGTGATAGCAGTGGAGATTAAGATGGATTATAGGAAGCCTCTCAGCGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTTTTTTACAGTTCGATTTGGTTTTTTTTTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTTTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGAAATCATTGAAATAAAATTTATACATTTAGAAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304201" ref_strand="+" ref_description="SGN-E304201 [cLEX-6-O3](-)">
      <seq>gcgaatgcatttcaattggtgaaggatttagagatagcagtggagattaagatggattataggaaggatctcagagggaccgaatcgaatgttatagtaaaagcagaggagatagagaaagcaataaagcagctgatggagcctgaaaatgaaataaggttgaaaagtgaaaggcatgaaggaaaagagcagattggtgctcaaagaaggtggatcttcctacaatgctgttggacattttatcgaacaagtgatggacatcacaaattgagaaacaatctttaaaacagcgatataattattcgaaaacaataaaatttcttctacagttcgatttggtcttcttctagaccactgcattcttattttagttattatgtagttctcatgtaaaaattttcagtccaagagtactgtattaaagtgggagtacgagggtcaaacttattaatgtttgatgtgattcagacatagaatttgatatcattgaaataaaatttatacatttagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="100241" stop="99125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99941" g_stop="99425" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E304201" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99941" e_stop="99425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTG-AAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAACTACA</genome_strand>
        <mrna_strand>GCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394045" ref_strand="+" ref_description="SGN-E394045 [TUS-14-E6]">
      <seq>agagtctcagggatgattttaacgaagatgtgacagattacgaggatgatccagaagcagagctttcggtgacaacgtatggaaacccatttccagctaaatgtttgccatctatagcctttgacaaggatggtggttccacaatgtaccttgatctttctaaaaggcttcgagaagctaaagctattcttgttaacactttctccgaattcgaatctcatgctgtcaaatccctctccctcgatgagaaaatcccacttgtatacccagtcggacccttgctaaaccttgataacgatcaggttaacaatcaagattcttctcagcatcaaactataatcaactggttagatgatcaacctgattcatcagtagtgtacctctgcttcggaagcttaggaagcttcaacgaggagcaaataaaggaaattgcatatgctctggagaagagcggatgtcgattcttgtggtccttaaagaagcctttggctaaagatacattttttccagctgcttatgataatccagaggatgttttgcctgaggggttctttgcaaaggacggaagcaatttgggaaggtgataggatgggcaccccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="100963" stop="99765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100663" g_stop="100065" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E394045" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100663" e_stop="100065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAACCTGATTCATCAGTAGTGTACCTCTGCTTCGGAAGCTTAGGAAGCTTCAACGAGGAGCAAATAAAGGAAATTGCATATGCTCTGGAGAAGAGCGGATGTCGATTCTTGTGGTCCTTAAAGAAGCCTTTGGCTAAAGATACATTTTTTCCAGCTGCTTATGATAATCCAGAGGATGTTTTGCCTGAGGGGTTC-TTGCAAAGGACGGAAGCAA-TTGGGAAGGTGATAGGATGGGCACCCCAG</genome_strand>
        <mrna_strand>AGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAACCTGATTCATCAGTAGTGTACCTCTGCTTCGGAAGCTTAGGAAGCTTCAACGAGGAGCAAATAAAGGAAATTGCATATGCTCTGGAGAAGAGCGGATGTCGATTCTTGTGGTCCTTAAAGAAGCCTTTGGCTAAAGATACATTTTTTCCAGCTGCTTATGATAATCCAGAGGATGTTTTGCCTGAGGGGTTCTTTGCAAAGGACGGAAGCAATTTGGGAAGGTGATAGGATGGGCACCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202335" ref_strand="+" ref_description="SGN-E202335 [cLEC-6-H13]">
      <seq>gagtctcagggatgattttaacgaagatgtgacagattacgaggatgatccagaagcagagctttcggtgacaacgtatggaaacccatttccagctaaatgtttgccatctatagcctttgacaaggatggtggttccacaatgtaccttgatctttctaaaaggcttcgagaagctaaagctattcttgttaacactttctccgaattcgaatctcatgctgtcaaatccctctccctcgatgagaaaatcccacttgtatacccagtcggacccttgctaaaccttgataacgatcaggttaacaatcaagattcttctcagcatcaaactataatcaactggttagatgatcaacctgattcatcagtagtgtacctctgcttcggaagcttaggaagcttcaacgaggagcaaataaaggaaattgcatatgctctggagaagagcggatgtcgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="100962" stop="99900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100662" g_stop="100200" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E202335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100662" e_stop="100200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAACCTGATTCATCAGTAGTGTACCTCTGCTTCGGAAGCTTAGGAAGCTTCAACGAGGAGCAAATAAAGGAAATTGCATATGCTCTGGAGAAGAGCGGATGTCGATTC</genome_strand>
        <mrna_strand>GAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAACCTGATTCATCAGTAGTGTACCTCTGCTTCGGAAGCTTAGGAAGCTTCAACGAGGAGCAAATAAAGGAAATTGCATATGCTCTGGAGAAGAGCGGATGTCGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543422" ref_strand="+" ref_description="SGN-E543422 [TUS-65-D17]">
      <seq>cacacttgagatggcaaaggtcctaatagctagagatgaacatctcgtcattacagtcctcgtaatcaagctgccttgtgacaacaaactcagctcttatattgaatcagtctcgacaaacccaaactacaactctcaaatgaagttcattgaactccctcaagaatgagtccatcttacagtcaatcacaaacacaacttttcatcacatttttatccagtcataagcctcaagtcaaaaattcagtgattgaaatcttgaattcaggatcaaatcgtcttgcggccctcgttattgacatgatgtgtacagcaatgatagacgttgccaatgaatttggactcccgaacttatgttttctacacatctggtgctgccatgcttggtcttcagcttcatttgcagagtctcagggatgattttaacgaagatgtgacagattacgaggatgatccagaagcagagctttcggtgacaacgtatggaaacccatttccagctaaatgtttgccatctatagcctttgacaaggatggtggttccacaatgtaccttgatctttctaaaaggcttcgagaagctaaagctattcttgttaacactttctccgaattcgaatctcatgctgtcaaatccctctccctcgatgagaaaatcccacttgtatacccagtcggacccttgctaaaccttgataacgatcaggtttacaaatcagattcttctcagcatcaaactataatcaactgggtagatgatcaaccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="101364" stop="99999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101064" g_stop="100299" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E543422" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101064" e_stop="100299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGAGATGGCAAAGGTCCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTGTGACAACAAACTCAGCTCTTATATTGAATCAGTCTCGACAAACCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAAG-ATGAGTCCATCTTACAGTCAATCACAAACACAAC-TTTCATCACATTTTTATCCAGTCATAAGCCTCAAGTCAGAAATTCAGTGATTGAAATCTTGAATTCAGGATCAAATCGTCTTGCGGCCCTCGTTATTGACATGATGTGTACAGCAATGATAGACGTTGCCAATGAATTTGGACTCCCG-ACTTATGTTTTCTACACATCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAA-CCTGAT</genome_strand>
        <mrna_strand>CACACTTGAGATGGCAAAGGTCCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTGTGACAACAAACTCAGCTCTTATATTGAATCAGTCTCGACAAACCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAAGAATGAGTCCATCTTACAGTCAATCACAAACACAACTTTTCATCACATTTTTATCCAGTCATAAGCCTCAAGTCAAAAATTCAGTGATTGAAATCTTGAATTCAGGATCAAATCGTCTTGCGGCCCTCGTTATTGACATGATGTGTACAGCAATGATAGACGTTGCCAATGAATTTGGACTCCCGAACTTATGTTTTCTACACATCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTTACAAATCAGATTCTTCTCAGCATCAAACTATAATCAACTGGGTAGATGATCAACCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304063" ref_strand="+" ref_description="SGN-E304063 [cLEX-6-O3]">
      <seq>acacttgagatggcaaaggtcctaatagctagagatgaacatctcgtcattacagtcctcgtaatcaagctgccttgtgacaacaaactcagctcttatattgaatcagtctcgacaaacccaaactacaactctcaaatgaagttcattgaactccctcaagatgagtccatcttacagtcaatcacaaacacaactttcatcacatttttatccagtcataagcctcaagtcagaaattcagtgattgaaatcttgaattcaggatcaaatcgtcttgcggccctcgttattgacatgatgtgtacagcaatgatagacgttgccaatgaatttggactcccgacttatgttttctacacatctggtgctgccatgcttggtcttcagcttcatttgcagagtctcagggatgattttaacgaagatgtgacagattacgaggatgatccagaagcagagctttcggtgacaacgtatggaaacccatttccagctaaatgtttgccatctatagcctttgacaaggatggtggttccacaatgtaccttgatctttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="101363" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101063" g_stop="100502" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-E304063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101063" e_stop="100502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGAGATGGCAAAGGTCCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTGTGACAACAAACTCAGCTCTTATATTGAATCAGTCTCGACAAACCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAAGATGAGTCCATCTTACAGTCAATCACAAACACAACTTTCATCACATTTTTATCCAGTCATAAGCCTCAAGTCAGAAATTCAGTGATTGAAATCTTGAATTCAGGATCAAATCGTCTTGCGGCCCTCGTTATTGACATGATGTGTACAGCAATGATAGACGTTGCCAATGAATTTGGACTCCCGACTTATGTTTTCTACACATCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTA</genome_strand>
        <mrna_strand>ACACTTGAGATGGCAAAGGTCCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTGTGACAACAAACTCAGCTCTTATATTGAATCAGTCTCGACAAACCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAAGATGAGTCCATCTTACAGTCAATCACAAACACAACTTTCATCACATTTTTATCCAGTCATAAGCCTCAAGTCAGAAATTCAGTGATTGAAATCTTGAATTCAGGATCAAATCGTCTTGCGGCCCTCGTTATTGACATGATGTGTACAGCAATGATAGACGTTGCCAATGAATTTGGACTCCCGACTTATGTTTTCTACACATCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>69</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14434" PGL_stop="12973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14434" e_stop="12973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="14434" e_stop="12973" e_length="1462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14434" stop="13644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14433" stop="13952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13800" stop="12973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATCATCTTTGCTTCATGTCTTACTGCGGAGTTAGTTTCCATCAATTTACTTATCCCATTTTCGATGGCTTCTGCTGTTACTATAGCTTGATCTTTATTCCTCTCGCAGTAATCCAAAGTAATCTCCACTGCTACTCCTATCTCTTTCACTAATTGAAACGCGTTAACCTGCTGTTCTGAGTGCAATGGCCATGTCGCTATAGGAACACCATACCATAAGCTTTCAAGTATCGAATTCCATCCACAGTGTGATACGAATCCCCCGATTGCTTCGTGAGACAACACTTTCAATTGTGGAACCCATCCTACCACTTTCCCTTTTTTCTCTGTTCTCTTTAGGAATCCTTCAGGCAAAATTTCTGAATAGCTCGTGTATTCTCCTGGAAATTGAGCGTTGTTGCTCTGAGGTGGACGACGTAAAGACCATAAGAAACGGCAACCAATGTTATCGAGAGCTATAGCGATCTGTTTCACTTGATCCGTTGGTAAACTCCCCTGGCTCCCAAAACAGAGTAGCACCACCGAATTAGGTGGCTGTTTGTCCAGCCAATTTGTTATTTCTGCCTCCTCTGACTCCGACTGTGATTTCGATTGGTTTAAAATTGGACCAATTGGATAGATGGATGGCAGGGGATGAGCTTGCTCAGATCTTGATAGGTTGTTGTTATTGTATGCATCCAAGGCGTATACTTCTAGTTCAGCAAAAGTGTTGATGATGATTCCTTTGGCTTTTCTATACCCACGAGCAAAATCGAGAAATCTCCCTAACCATGTGTCTCTATCGACTAGAACCATTGGCAATACGTTCGTAGGAACAGGGTATGCGTAGCTAGGAAATGATAACAGAGCAGTACCATCATCAGAGTTTTTGAAACTGGAAACATCTCTCGAACACTCATCTTCAAGAAACTGGAAATGAATCATCAACCCAAGAAAAGCAGCAGGGGAAGTGAAAAACACATAGCTCGGGATCCCAAACTCTTCAGCTACATCCATCAATGGAGTGCATAACATGTCTACAACAAATCCAGCAAGTTTAACACCGCCCCGTTGACTTATTAAAAATTCCCTGATTCGAGATTTTTGAGTTTGTACTAATCTGTTAACAAAGTGTCCTCGAGTTTTAGAGCTCCATTCCGGGGTTGGATCAACAGGTGGTAATTCAAAGAATCGAAGACGTTCAGAGGATGATGAATCAATTACAGAGTCGACAAAAGGGCCACTAACAGGGTCGATGTAATCAGGGAGTTTCATAATGAGGACAGTGATTGAGAGTTGATGATTTCGATTGATGAAAAGCTTGGCCAACTCCAACATCTGAGCAACATGGCCCATTGCCGGAGAAGGGATCAGAATCAATTCTGCTAATTTCTCCATAGGATCAAATTGTTTCTTTCAATTCAACTGCTAATGTACTTTCACTAAAATGGAAGAAAGATGTTTACAACAATACATAAA</gDNA_template>
            <first_frame> L  S  S  S  L  L  H  V  L  L  R  S  *  F  P  S  I  Y  L  S  H  F  R  W  L  L  L  L  L  *  L  D  L  Y  S  S  R  S  N  P  K  *  S  P  L  L  L  L  S  L  S  L  I  E  T  R  *  P  A  V  L  S  A  M  A  M  S  L  *  E  H  H  T  I  S  F  Q  V  S  N  S  I  H  S  V  I  R  I  P  R  L  L  R  E  T  T  L  S  I  V  E  P  I  L  P  L  S  L  F  S  L  F  S  L  G  I  L  Q  A  K  F  L  N  S  S  C  I  L  L  E  I  E  R  C  C  S  E  V  D  D  V  K  T  I  R  N  G  N  Q  C  Y  R  E  L  *  R  S  V  S  L  D  P  L  V  N  S  P  G  S  Q  N  R  V  A  P  P  N  *  V  A  V  C  P  A  N  L  L  F  L  P  P  L  T  P  T  V  I  S  I  G  L  K  L  D  Q  L  D  R  W  M  A  G  D  E  L  A  Q  I  L  I  G  C  C  Y  C  M  H  P  R  R  I  L  L  V  Q  Q  K  C  *  *  *  F  L  W  L  F  Y  T  H  E  Q  N  R  E  I  S  L  T  M  C  L  Y  R  L  E  P  L  A  I  R  S  *  E  Q  G  M  R  S  *  E  M  I  T  E  Q  Y  H  H  Q  S  F  *  N  W  K  H  L  S  N  T  H  L  Q  E  T  G  N  E  S  S  T  Q  E  K  Q  Q  G  K  *  K  T  H  S  S  G  S  Q  T  L  Q  L  H  P  S  M  E  C  I  T  C  L  Q  Q  I  Q  Q  V  *  H  R  P  V  D  L  L  K  I  P  *  F  E  I  F  E  F  V  L  I  C  *  Q  S  V  L  E  F  *  S  S  I  P  G  L  D  Q  Q  V  V  I  Q  R  I  E  D  V  Q  R  M  M  N  Q  L  Q  S  R  Q  K  G  H  *  Q  G  R  C  N  Q  G  V  S  *  *  G  Q  *  L  R  V  D  D  F  D  *  *  K  A  W  P  T  P  T  S  E  Q  H  G  P  L  P  E  K  G  S  E  S  I  L  L  I  S  P  *  D  Q  I  V  S  F  N  S  T  A  N  V  L  S  L  K  W  K  K  D  V  Y  N  N  T  *  </first_frame>
            <second_frame>  F  H  H  L  C  F  M  S  Y  C  G  V  S  F  H  Q  F  T  Y  P  I  F  D  G  F  C  C  Y  Y  S  L  I  F  I  P  L  A  V  I  Q  S  N  L  H  C  Y  S  Y  L  F  H  *  L  K  R  V  N  L  L  F  *  V  Q  W  P  C  R  Y  R  N  T  I  P  *  A  F  K  Y  R  I  P  S  T  V  *  Y  E  S  P  D  C  F  V  R  Q  H  F  Q  L  W  N  P  S  Y  H  F  P  F  F  L  C  S  L  *  E  S  F  R  Q  N  F  *  I  A  R  V  F  S  W  K  L  S  V  V  A  L  R  W  T  T  *  R  P  *  E  T  A  T  N  V  I  E  S  Y  S  D  L  F  H  L  I  R  W  *  T  P  L  A  P  K  T  E  *  H  H  R  I  R  W  L  F  V  Q  P  I  C  Y  F  C  L  L  *  L  R  L  *  F  R  L  V  *  N  W  T  N  W  I  D  G  W  Q  G  M  S  L  L  R  S  *  *  V  V  V  I  V  C  I  Q  G  V  Y  F  *  F  S  K  S  V  D  D  D  S  F  G  F  S  I  P  T  S  K  I  E  K  S  P  *  P  C  V  S  I  D  *  N  H  W  Q  Y  V  R  R  N  R  V  C  V  A  R  K  *  *  Q  S  S  T  I  I  R  V  F  E  T  G  N  I  S  R  T  L  I  F  K  K  L  E  M  N  H  Q  P  K  K  S  S  R  G  S  E  K  H  I  A  R  D  P  K  L  F  S  Y  I  H  Q  W  S  A  *  H  V  Y  N  K  S  S  K  F  N  T  A  P  L  T  Y  *  K  F  P  D  S  R  F  L  S  L  Y  *  S  V  N  K  V  S  S  S  F  R  A  P  F  R  G  W  I  N  R  W  *  F  K  E  S  K  T  F  R  G  *  *  I  N  Y  R  V  D  K  R  A  T  N  R  V  D  V  I  R  E  F  H  N  E  D  S  D  *  E  L  M  I  S  I  D  E  K  L  G  Q  L  Q  H  L  S  N  M  A  H  C  R  R  R  D  Q  N  Q  F  C  *  F  L  H  R  I  K  L  F  L  S  I  Q  L  L  M  Y  F  H  *  N  G  R  K  M  F  T  T  I  H  K </second_frame>
            <third_frame>   F  I  I  F  A  S  C  L  T  A  E  L  V  S  I  N  L  L  I  P  F  S  M  A  S  A  V  T  I  A  *  S  L  F  L  S  Q  *  S  K  V  I  S  T  A  T  P  I  S  F  T  N  *  N  A  L  T  C  C  S  E  C  N  G  H  V  A  I  G  T  P  Y  H  K  L  S  S  I  E  F  H  P  Q  C  D  T  N  P  P  I  A  S  *  D  N  T  F  N  C  G  T  H  P  T  T  F  P  F  F  S  V  L  F  R  N  P  S  G  K  I  S  E  *  L  V  Y  S  P  G  N  *  A  L  L  L  *  G  G  R  R  K  D  H  K  K  R  Q  P  M  L  S  R  A  I  A  I  C  F  T  *  S  V  G  K  L  P  W  L  P  K  Q  S  S  T  T  E  L  G  G  C  L  S  S  Q  F  V  I  S  A  S  S  D  S  D  C  D  F  D  W  F  K  I  G  P  I  G  *  M  D  G  R  G  *  A  C  S  D  L  D  R  L  L  L  L  Y  A  S  K  A  Y  T  S  S  S  A  K  V  L  M  M  I  P  L  A  F  L  Y  P  R  A  K  S  R  N  L  P  N  H  V  S  L  S  T  R  T  I  G  N  T  F  V  G  T  G  Y  A  *  L  G  N  D  N  R  A  V  P  S  S  E  F  L  K  L  E  T  S  L  E  H  S  S  S  R  N  W  K  *  I  I  N  P  R  K  A  A  G  E  V  K  N  T  *  L  G  I  P  N  S  S  A  T  S  I  N  G  V  H  N  M  S  T  T  N  P  A  S  L  T  P  P  R  *  L  I  K  N  S  L  I  R  D  F  *  V  C  T  N  L  L  T  K  C  P  R  V  L  E  L  H  S  G  V  G  S  T  G  G  N  S  K  N  R  R  R  S  E  D  D  E  S  I  T  E  S  T  K  G  P  L  T  G  S  M  *  S  G  S  F  I  M  R  T  V  I  E  S  *  *  F  R  L  M  K  S  L  A  N  S  N  I  *  A  T  W  P  I  A  G  E  G  I  R  I  N  S  A  N  F  S  I  G  S  N  C  F  F  Q  F  N  C  *  C  T  F  T  K  M  E  E  R  C  L  Q  Q  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14227" stop="13970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHHTISFQVSNSIHSVIRIPRLLRETTLSIVEPILPLSLFSLFSLGILQAKFLNSSCILLEIERCCSEVDDVKTIRNGNQCYREL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12992" PGL_stop="13441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12992" e_stop="13441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="12992" e_stop="13441" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12992" stop="13441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTCTTCCATTTTAGTGAAAGTACATTAGCAGTTGAATTGAAAGAAACAATTTGATCCTATGGAGAAATTAGCAGAATTGATTCTGATCCCTTCTCCGGCAATGGGCCATGTTGCTCAGATGTTGGAGTTGGCCAAGCTTTTCATCAATCGAAATCATCAACTCTCAATCACTGTCCTCATTATGAAACTCCCTGATTACATCGACCCTGTTAGTGGCCCTTTTGTCGACTCTGTAATTGATTCATCATCCTCTGAACGTCTTCGATTCTTTGAATTACCACCTGTTGATCCAACCCCGGAATGGAGCTCTAAAACTCGAGGACACTTTGTTAACAGATTAGTACAAACTCAAAAATCTCGAATCAGGGAATTTTTAATAAGTCAACGGGGCGGTGTTAAACTTGCTGGATTTGTTGTAGACATGTTATGCACTCCATTGATGGATG</gDNA_template>
            <first_frame> I  F  L  P  F  *  *  K  Y  I  S  S  *  I  E  R  N  N  L  I  L  W  R  N  *  Q  N  *  F  *  S  L  L  R  Q  W  A  M  L  L  R  C  W  S  W  P  S  F  S  S  I  E  I  I  N  S  Q  S  L  S  S  L  *  N  S  L  I  T  S  T  L  L  V  A  L  L  S  T  L  *  L  I  H  H  P  L  N  V  F  D  S  L  N  Y  H  L  L  I  Q  P  R  N  G  A  L  K  L  E  D  T  L  L  T  D  *  Y  K  L  K  N  L  E  S  G  N  F  *  *  V  N  G  A  V  L  N  L  L  D  L  L  *  T  C  Y  A  L  H  *  W  M </first_frame>
            <second_frame>  S  F  F  H  F  S  E  S  T  L  A  V  E  L  K  E  T  I  *  S  Y  G  E  I  S  R  I  D  S  D  P  F  S  G  N  G  P  C  C  S  D  V  G  V  G  Q  A  F  H  Q  S  K  S  S  T  L  N  H  C  P  H  Y  E  T  P  *  L  H  R  P  C  *  W  P  F  C  R  L  C  N  *  F  I  I  L  *  T  S  S  I  L  *  I  T  T  C  *  S  N  P  G  M  E  L  *  N  S  R  T  L  C  *  Q  I  S  T  N  S  K  I  S  N  Q  G  I  F  N  K  S  T  G  R  C  *  T  C  W  I  C  C  R  H  V  M  H  S  I  D  G   </second_frame>
            <third_frame>   L  S  S  I  L  V  K  V  H  *  Q  L  N  *  K  K  Q  F  D  P  M  E  K  L  A  E  L  I  L  I  P  S  P  A  M  G  H  V  A  Q  M  L  E  L  A  K  L  F  I  N  R  N  H  Q  L  S  I  T  V  L  I  M  K  L  P  D  Y  I  D  P  V  S  G  P  F  V  D  S  V  I  D  S  S  S  S  E  R  L  R  F  F  E  L  P  P  V  D  P  T  P  E  W  S  S  K  T  R  G  H  F  V  N  R  L  V  Q  T  Q  K  S  R  I  R  E  F  L  I  S  Q  R  G  G  V  K  L  A  G  F  V  V  D  M  L  C  T  P  L  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13036" stop="13440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQFDPMEKLAELILIPSPAMGHVAQMLELAKLFINRNHQLSITVLIMKLPDYIDPVSGPFVDSVIDSSSSERLRFFELPPVDPTPEWSSKTRGHFVNRLVQTQKSRIREFLISQRGGVKLAGFVVDMLCTPLMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21178" PGL_stop="20775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21178" e_stop="20775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="21178" e_stop="20775" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21178" stop="20775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCTCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCTTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAAGAGATTAGGGAATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCTGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  L  K  S  *  K  T  L  I  S  L  L  M  M  R  L  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  E  S  G  V  T  N  R  H  V  D  L  G  D  L  V  S  R  T  D  T  *  I  *  G  I  E  C  H  E  P  T   </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  S  N  L  E  K  P  *  S  L  C  *  *  *  G  F  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  K  R  L  G  N  R  V  S  R  T  D  T  *  I  *  G  I  W  C  H  E  P  T  R  R  F  R  G  S  S  V  T  N  R  H  </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  R  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0049C13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30020" PGL_stop="27648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30020" e_stop="29858"/>
            <exon e_start="29783" e_stop="29714"/>
            <exon e_start="29565" e_stop="29188"/>
            <exon e_start="29120" e_stop="28395"/>
            <exon e_start="28300" e_stop="27648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30020" e_stop="29858" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29783" e_stop="29714" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.798">
            <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29565" e_stop="29188" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29120" e_stop="28395" e_length="726"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28394" i_stop="28301" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28300" e_stop="27648" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30020" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29961" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28395"/>
              <exon start="28300" stop="27671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29941" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29935" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29935" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29935" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="29038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29934" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29928" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="29045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29914" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29880" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29782" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29494" stop="29188"/>
              <exon start="29120" stop="28806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29342" stop="29192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29246" stop="29188"/>
              <exon start="29120" stop="28737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28472" stop="28395"/>
              <exon start="28300" stop="27648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540120" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28213" stop="27669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28190" stop="27665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253511" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28141" stop="27707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28127" stop="27648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27987" stop="27677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG : GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG : TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG : GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAAAGGATATCAGCAATACTAGAACACGTGACAGTCGATGATCTGTTAGTCTTGTCTTTTTCTTACGACGGAGAAAGACTATTCGATCTTGAGAGCGTGAGGAGAATCATTTCCGGATTTATGGAGAAAGAGAAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAG : GCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCACACTTGATCAAGATTGATTTCATCTTTTT</gDNA_template>
            <first_frame> D  R  Q  T  F  L  Y  V  S  Y  I  I  R  P  L  L  F  I  I  S  T  *  K  F  S  A  L  C  T  K  T  N  L  T  W  L  L  L  S  K  I  P  I  D  S  L  L  Q  W  K  E  L  A  N   : G  Y  F  H  K  K  F  Q  L  M  L  L  L  K  *  V  K  Q  T  L  I  F  T  S :   S  C  *  *  Q  R  A  I  T  *  G  N  L  Y  L  I  L  K  K  V  M  *  V  V  *  T  C  L  I  F  L  E  G  Q  R  C  L  R  R  Q  P  S  S  A  M  E  L  T  L  K  S  Q  Y  I  T  L  L  L  F  V  V  L  L  N  I  F  K  *  L  I  N  T  V  T  T  I  S  Q  A  E  Q  R  I  F  *  L  K  L  P  *  L  A  F  L  V  H  L  L  C  *  S  H  V  K  I  F  F  L  L  H  M  I  S  I  S  F  K  D  V  L  T  S  P  V  L  R :   R  V  W  R  R  I  F  L  A  D  H  H  Q  I  G  G  R  K  S  *  L  S  *  M  *  L  F  S  R  E  L  L  L  Q  *  K  L  V  G  Q  K  R  *  P  *  Q  V  P  *  S  H  I  Q  R  D  L  F  V  I  L  Y  V  T  T  Q  E  T  T  R  D  *  W  Y  Q  R  I  R  I  *  E  C  I  N  G  N  F  *  S  R  L  *  L  C  C  P  R  R  E  Q  L  F  Q  S  I  S  C  V  V  S  C  V  Q  L  F  S  *  E  Q  P  V  A  A  R  M  N  W  R  K  G  Y  Q  Q  Y  *  N  T  *  Q  S  M  I  C  *  S  C  L  F  L  T  T  E  K  D  Y  S  I  L  R  A  *  G  E  S  F  P  D  L  W  R  K  R  R  V  *  L  C  L  K  V  V  I  L  E  T  F  V  P  P  L  C  R  E  L  Q  R  L  S  M  L  I  L  V  K  S  L  H  L  E  I  S  V  Y  Q  N  S  M  E  L  L  F  W  F  L  R  A  R  E  R  L  M  M  I  F  I  E  L  L  I  S  T  *  R :   H  I  H  I  W  M  K  L  K  E  K  K  C  V  V  *  W  I  L  *  N  Y  H  M  K  Q  E  S  M  L  L  K  T  N  V  C  R  C  K  *  S  F  M  L  S  I  S  I  N  *  R  *  G  A  E  Q  Q  M  I  V  I  T  T  C  P  K  P  W  Q  Q  G  I  N  Y  K  L  M  F  P  S  *  R  K  M  K  F  *  E  R  S  C  *  R  *  R  C  T  *  Q  I  Y  R  K  Q  Q  I  L  V  K  E  H  Q  K  G  V  *  R  R  Q  H  S  S  L  L  S  P  K  H  *  A  N  S  I  P  L  N  M  D  Q  R  T  L  L  V  L  L  M  M  L  L  *  I  L  L  S  L  G  E  E  D  F  P  Y  L  K  L  F  T  L  F  G  L  I  L  V  L  C  C  V  K  K  L  *  L  I  L  Y  C  K  G  L  I  D  Y  V  V  *  L  Y  C  Y  V  N  I  F  M  Y  H  T  *  S  R  L  I  S  S  F  </first_frame>
            <second_frame>  T  D  K  L  F  S  M  Y  L  I  *  *  D  P  Y  S  L  L  Y  P  H  K  S  F  P  L  Y  A  L  K  P  I  S  H  G  Y  S  S  Q  K  Y  Q  *  T  L  S  C  N  G  K  N  W  P  M  :  G  I  F  T  R  N  S  N  *  C  Y  C  *  S  R  *  S  K  L  *  S  S  Q   : V  H  A  S  S  K  E  Q  L  H  K  E  T  Y  T  *  Y  *  R  K  *  C  K  S  Y  K  L  V  *  Y  S  W  R  A  R  D  V  *  E  G  S  Q  V  L  L  W  S  *  L  *  N  H  S  T  *  R  C  C  S  S  L  C  C  *  I  S  S  N  D  *  *  I  L  *  Q  Q  S  R  K  Q  N  R  G  F  S  S  S  S  C  L  D  *  P  F  W  C  T  C  C  V  K  V  M  *  K  S  S  S  S  C  T  *  S  Q  Y  H  S  K  M  C  *  H  R  R  C  *   : G  V  C  G  G  E  F  S  *  Q  I  T  T  K  L  V  D  G  R  V  N  Y  L  R  C  S  F  F  R  E  N  Y  C  C  N  E  N  S  W  G  K  S  V  N  H  S  K  C  H  N  H  I  Y  R  E  I  S  S  *  S  C  T  *  P  L  R  K  Q  H  E  I  N  G  T  R  G  F  G  Y  E  N  A  S  T  G  T  S  R  V  D  C  D  S  V  A  R  G  E  S  S  F  S  N  Q  F  L  V  L  S  P  A  Y  S  Y  F  L  K  S  S  Q  *  L  Q  E  *  I  G  E  K  D  I  S  N  T  R  T  R  D  S  R  *  S  V  S  L  V  F  F  L  R  R  R  K  T  I  R  S  *  E  R  E  E  N  H  F  R  I  Y  G  E  R  E  E  C  S  C  V  *  R  W  *  F  W  R  R  L  Y  H  R  Y  A  E  S  C  K  D  C  R  C  L  S  W  *  N  R  Y  I  W  R  S  Q  Y  I  K  I  Q  W  N  C  Y  F  G  S  *  G  R  E  K  G  *  *  *  S  L  S  S  C  *  Y  L  L  E   : G  T  S  T  F  G  *  N  *  K  R  K  S  V  *  C  D  G  S  F  E  T  I  T  *  S  K  S  P  C  F  S  K  Q  T  F  A  G  A  N  S  P  S  C  S  L  F  R  S  T  K  D  K  E  R  S  S  R  *  *  *  *  Q  H  A  R  S  H  G  N  K  E  S  I  T  S  *  C  F  P  R  K  G  K  *  S  F  E  N  G  V  A  K  D  E  D  V  H  S  R  Y  T  E  N  N  K  F  *  S  R  N  I  K  R  E  S  E  E  D  N  I  L  L  F  C  L  Q  N  I  R  Q  I  Q  S  L  *  T  W  I  K  G  H  F  *  Y  C  *  *  C  C  S  R  S  Y  *  A  *  E  K  K  I  F  H  I  L  S  Y  L  H  Y  L  V  *  F  *  F  Y  V  V  *  K  N  Y  D  *  F  C  T  V  K  D  *  L  I  M  L  F  D  Y  I  V  M  L  I  Y  S  C  I  T  L  D  Q  D  *  F  H  L  F </second_frame>
            <third_frame>   Q  T  N  F  S  L  C  I  L  Y  N  K  T  P  T  L  Y  Y  I  H  I  K  V  F  R  S  M  H  *  N  Q  S  H  M  A  T  P  L  K  N  T  N  R  L  S  L  A  M  E  R  T  G  Q  W :   V  F  S  Q  E  I  P  T  D  V  I  V  E  V  G  E  A  N  F  N  L  H  K  :  F  M  L  V  A  K  S  N  Y  I  R  K  L  I  L  D  T  K  E  S  D  V  S  R  I  N  L  S  D  I  P  G  G  P  E  M  F  E  K  A  A  K  F  C  Y  G  V  N  F  E  I  T  V  H  N  V  A  A  L  R  C  A  A  E  Y  L  Q  M  T  D  K  Y  C  D  N  N  L  A  S  R  T  E  D  F  L  A  Q  V  A  L  T  S  L  S  G  A  L  V  V  L  K  S  C  E  N  L  L  P  L  A  H  D  L  N  I  I  Q  R  C  V  D  I  A  G  A  K  :  A  C  V  E  A  N  F  P  S  R  S  P  P  N  W  W  T  E  E  L  T  I  L  D  V  A  F  F  E  R  I  I  V  A  M  K  T  R  G  A  K  A  L  T  I  A  S  A  I  I  T  Y  T  E  R  S  L  R  D  L  V  R  D  H  S  G  N  N  T  R  L  M  V  P  E  D  S  D  M  R  M  H  Q  R  E  L  L  E  S  I  V  T  L  L  P  A  E  R  A  A  F  P  I  N  F  L  C  C  L  L  R  T  A  I  F  L  R  A  A  S  S  C  K  N  E  L  E  K  R  I  S  A  I  L  E  H  V  T  V  D  D  L  L  V  L  S  F  S  Y  D  G  E  R  L  F  D  L  E  S  V  R  R  I  I  S  G  F  M  E  K  E  K  S  V  A  V  F  K  G  G  D  F  G  D  V  C  T  T  A  M  Q  R  V  A  K  T  V  D  A  Y  L  G  E  I  A  T  F  G  D  L  S  I  S  K  F  N  G  I  A  I  L  V  P  K  G  A  R  K  A  D  D  D  L  Y  R  A  V  D  I  Y  L  K  :  A  H  P  H  L  D  E  I  E  R  E  K  V  C  S  V  M  D  P  L  K  L  S  H  E  A  R  V  H  A  S  Q  N  K  R  L  P  V  Q  I  V  L  H  A  L  Y  F  D  Q  L  K  I  R  S  G  A  A  D  D  S  N  N  N  M  P  E  A  M  A  T  R  N  Q  L  Q  A  D  V  S  L  V  K  E  N  E  V  L  R  T  E  L  L  K  M  K  M  Y  I  A  D  I  Q  K  T  T  N  S  S  Q  G  T  S  K  G  S  L  K  K  T  T  F  F  S  S  V  S  K  T  L  G  K  F  N  P  F  K  H  G  S  K  D  T  S  S  I  V  D  D  A  A  L  D  L  T  K  P  R  R  R  R  F  S  I  S  *  A  I  Y  I  I  W  F  N  F  S  F  M  L  C  E  K  T  M  I  D  F  V  L  *  R  I  D  *  L  C  C  L  I  I  L  L  C  *  Y  I  H  V  S  H  L  I  K  I  D  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29931" stop="29858"/>
                    <exon start="29783" stop="29714"/>
                    <exon start="29565" stop="29188"/>
                    <exon start="29120" stop="28395"/>
                    <exon start="28300" stop="27806"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1740</number_coding_nucleotides>
                  <number_encoded_amino_acids>580</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSHMATPLKNTNRLSLAMERTGQWVFSQEIPTDVIVEVGEANFNLHKFMLVAKSNYIRKLILDTKESDVSRINLSDIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDKYCDNNLASRTEDFLAQVALTSLSGALVVLKSCENLLPLAHDLNIIQRCVDIAGAKACVEANFPSRSPPNWWTEELTILDVAFFERIIVAMKTRGAKALTIASAIITYTERSLRDLVRDHSGNNTRLMVPEDSDMRMHQRELLESIVTLLPAERAAFPINFLCCLLRTAIFLRAASSCKNELEKRISAILEHVTVDDLLVLSFSYDGERLFDLESVRRIISGFMEKEKSVAVFKGGDFGDVCTTAMQRVAKTVDAYLGEIATFGDLSISKFNGIAILVPKGARKADDDLYRAVDIYLKAHPHLDEIEREKVCSVMDPLKLSHEARVHASQNKRLPVQIVLHALYFDQLKIRSGAADDSNNNMPEAMATRNQLQADVSLVKENEVLRTELLKMKMYIADIQKTTNSSQGTSKGSLKKTTFFSSVSKTLGKFNPFKHGSKDTSSIVDDAALDLTKPRRRRFSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29784" e_stop="29714"/>
            <exon e_start="29565" e_stop="29188"/>
            <exon e_start="29120" e_stop="28737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29784" e_stop="29714" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.798">
            <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29565" e_stop="29188" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29120" e_stop="28737" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29784" stop="29714"/>
              <exon start="29565" stop="29402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29782" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29494" stop="29188"/>
              <exon start="29120" stop="28806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29342" stop="29192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29246" stop="29188"/>
              <exon start="29120" stop="28737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG : TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG : GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</gDNA_template>
            <first_frame> G  Y  F  H  K  K  F  Q  L  M  L  L  L  K  *  V  K  Q  T  L  I  F  T  S :   S  C  *  *  Q  R  A  I  T  *  G  N  L  Y  L  I  L  K  K  V  M  *  V  V  *  T  C  L  I  F  L  E  G  Q  R  C  L  R  R  Q  P  S  S  A  M  E  L  T  L  K  S  Q  Y  I  T  L  L  L  F  V  V  L  L  N  I  F  K  *  L  I  N  T  V  T  T  I  S  Q  A  E  Q  R  I  F  *  L  K  L  P  *  L  A  F  L  V  H  L  L  C  *  S  H  V  K  I  F  F  L  L  H  M  I  S  I  S  F  K  D  V  L  T  S  P  V  L  R :   R  V  W  R  R  I  F  L  A  D  H  H  Q  I  G  G  R  K  S  *  L  S  *  M  *  L  F  S  R  E  L  L  L  Q  *  K  L  V  G  Q  K  R  *  P  *  Q  V  P  *  S  H  I  Q  R  D  L  F  V  I  L  Y  V  T  T  Q  E  T  T  R  D  *  W  Y  Q  R  I  R  I  *  E  C  I  N  G  N  F  *  S  R  L  *  L  C  C  P  R  R  E  Q  L  F  Q  S  I  S  C  V  V  S  C  V  Q  L  F  S  *  E  Q  P  V  A  A  R  M  N  W  R   </first_frame>
            <second_frame>  G  I  F  T  R  N  S  N  *  C  Y  C  *  S  R  *  S  K  L  *  S  S  Q   : V  H  A  S  S  K  E  Q  L  H  K  E  T  Y  T  *  Y  *  R  K  *  C  K  S  Y  K  L  V  *  Y  S  W  R  A  R  D  V  *  E  G  S  Q  V  L  L  W  S  *  L  *  N  H  S  T  *  R  C  C  S  S  L  C  C  *  I  S  S  N  D  *  *  I  L  *  Q  Q  S  R  K  Q  N  R  G  F  S  S  S  S  C  L  D  *  P  F  W  C  T  C  C  V  K  V  M  *  K  S  S  S  S  C  T  *  S  Q  Y  H  S  K  M  C  *  H  R  R  C  *   : G  V  C  G  G  E  F  S  *  Q  I  T  T  K  L  V  D  G  R  V  N  Y  L  R  C  S  F  F  R  E  N  Y  C  C  N  E  N  S  W  G  K  S  V  N  H  S  K  C  H  N  H  I  Y  R  E  I  S  S  *  S  C  T  *  P  L  R  K  Q  H  E  I  N  G  T  R  G  F  G  Y  E  N  A  S  T  G  T  S  R  V  D  C  D  S  V  A  R  G  E  S  S  F  S  N  Q  F  L  V  L  S  P  A  Y  S  Y  F  L  K  S  S  Q  *  L  Q  E  *  I  G  E  </second_frame>
            <third_frame>   V  F  S  Q  E  I  P  T  D  V  I  V  E  V  G  E  A  N  F  N  L  H  K  :  F  M  L  V  A  K  S  N  Y  I  R  K  L  I  L  D  T  K  E  S  D  V  S  R  I  N  L  S  D  I  P  G  G  P  E  M  F  E  K  A  A  K  F  C  Y  G  V  N  F  E  I  T  V  H  N  V  A  A  L  R  C  A  A  E  Y  L  Q  M  T  D  K  Y  C  D  N  N  L  A  S  R  T  E  D  F  L  A  Q  V  A  L  T  S  L  S  G  A  L  V  V  L  K  S  C  E  N  L  L  P  L  A  H  D  L  N  I  I  Q  R  C  V  D  I  A  G  A  K  :  A  C  V  E  A  N  F  P  S  R  S  P  P  N  W  W  T  E  E  L  T  I  L  D  V  A  F  F  E  R  I  I  V  A  M  K  T  R  G  A  K  A  L  T  I  A  S  A  I  I  T  Y  T  E  R  S  L  R  D  L  V  R  D  H  S  G  N  N  T  R  L  M  V  P  E  D  S  D  M  R  M  H  Q  R  E  L  L  E  S  I  V  T  L  L  P  A  E  R  A  A  F  P  I  N  F  L  C  C  L  L  R  T  A  I  F  L  R  A  A  S  S  C  K  N  E  L  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29782" stop="29714"/>
                    <exon start="29565" stop="29188"/>
                    <exon start="29120" stop="28737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSQEIPTDVIVEVGEANFNLHKFMLVAKSNYIRKLILDTKESDVSRINLSDIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDKYCDNNLASRTEDFLAQVALTSLSGALVVLKSCENLLPLAHDLNIIQRCVDIAGAKACVEANFPSRSPPNWWTEELTILDVAFFERIIVAMKTRGAKALTIASAIITYTERSLRDLVRDHSGNNTRLMVPEDSDMRMHQRELLESIVTLLPAERAAFPINFLCCLLRTAIFLRAASSCKNELEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28607" e_stop="28395"/>
            <exon e_start="28300" e_stop="28159"/>
            <exon e_start="28086" e_stop="27677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28607" e_stop="28395" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28394" i_stop="28301" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28300" e_stop="28159" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28158" i_stop="28087" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28086" e_stop="27677" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28607" stop="28395"/>
              <exon start="28300" stop="28159"/>
              <exon start="28086" stop="27803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27987" stop="27677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTGTAGCTGTGTTTAAAGGTGGTGATTTTGGAGACGTTTGTACCACCGCTATGCAGAGAGTTGCAAAGACTGTCGATGCTTATCTTGGTGAAATCGCTACATTTGGAGATCTCAGTATATCAAAATTCAATGGAATTGCTATTTTGGTTCCTAAGGGCGCGAGAAAGGCTGATGATGATCTTTATCGAGCTGTTGATATCTACTTGAAG : GCACATCCACATTTGGATGAAATTGAAAGAGAAAAAGTGTGTAGTGTGATGGATCCTTTGAAACTATCACATGAAGCAAGAGTCCATGCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCG : ATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGGATTGATTGATTATGTTGTTTGATTATATTGTTATGTTAATATATTCATGTATCA</gDNA_template>
            <first_frame> K  S  V  A  V  F  K  G  G  D  F  G  D  V  C  T  T  A  M  Q  R  V  A  K  T  V  D  A  Y  L  G  E  I  A  T  F  G  D  L  S  I  S  K  F  N  G  I  A  I  L  V  P  K  G  A  R  K  A  D  D  D  L  Y  R  A  V  D  I  Y  L  K  :  A  H  P  H  L  D  E  I  E  R  E  K  V  C  S  V  M  D  P  L  K  L  S  H  E  A  R  V  H  A  S  Q  N  K  R  L  P  V  Q  I  V  L  H  A  L  Y  F   : D  Q  L  Q  A  D  V  S  L  V  K  E  N  E  V  L  R  T  E  L  L  K  M  K  M  Y  I  A  D  I  Q  K  T  T  N  S  S  Q  G  T  S  K  G  S  L  K  K  T  T  F  F  S  S  V  S  K  T  L  G  K  F  N  P  F  K  H  G  S  K  D  T  S  S  I  V  D  D  A  A  L  D  L  T  K  P  R  R  R  R  F  S  I  S  *  A  I  Y  I  I  W  F  N  F  S  F  M  L  C  E  K  T  M  I  D  F  V  L  *  R  I  D  *  L  C  C  L  I  I  L  L  C  *  Y  I  H  V  S </first_frame>
            <second_frame>  R  V  *  L  C  L  K  V  V  I  L  E  T  F  V  P  P  L  C  R  E  L  Q  R  L  S  M  L  I  L  V  K  S  L  H  L  E  I  S  V  Y  Q  N  S  M  E  L  L  F  W  F  L  R  A  R  E  R  L  M  M  I  F  I  E  L  L  I  S  T  *  R :   H  I  H  I  W  M  K  L  K  E  K  K  C  V  V  *  W  I  L  *  N  Y  H  M  K  Q  E  S  M  L  L  K  T  N  V  C  R  C  K  *  S  F  M  L  S  I  S  :  I  N  Y  K  L  M  F  P  S  *  R  K  M  K  F  *  E  R  S  C  *  R  *  R  C  T  *  Q  I  Y  R  K  Q  Q  I  L  V  K  E  H  Q  K  G  V  *  R  R  Q  H  S  S  L  L  S  P  K  H  *  A  N  S  I  P  L  N  M  D  Q  R  T  L  L  V  L  L  M  M  L  L  *  I  L  L  S  L  G  E  E  D  F  P  Y  L  K  L  F  T  L  F  G  L  I  L  V  L  C  C  V  K  K  L  *  L  I  L  Y  C  K  G  L  I  D  Y  V  V  *  L  Y  C  Y  V  N  I  F  M  Y   </second_frame>
            <third_frame>   E  C  S  C  V  *  R  W  *  F  W  R  R  L  Y  H  R  Y  A  E  S  C  K  D  C  R  C  L  S  W  *  N  R  Y  I  W  R  S  Q  Y  I  K  I  Q  W  N  C  Y  F  G  S  *  G  R  E  K  G  *  *  *  S  L  S  S  C  *  Y  L  L  E   : G  T  S  T  F  G  *  N  *  K  R  K  S  V  *  C  D  G  S  F  E  T  I  T  *  S  K  S  P  C  F  S  K  Q  T  F  A  G  A  N  S  P  S  C  S  L  F  R :   S  I  T  S  *  C  F  P  R  K  G  K  *  S  F  E  N  G  V  A  K  D  E  D  V  H  S  R  Y  T  E  N  N  K  F  *  S  R  N  I  K  R  E  S  E  E  D  N  I  L  L  F  C  L  Q  N  I  R  Q  I  Q  S  L  *  T  W  I  K  G  H  F  *  Y  C  *  *  C  C  S  R  S  Y  *  A  *  E  K  K  I  F  H  I  L  S  Y  L  H  Y  L  V  *  F  *  F  Y  V  V  *  K  N  Y  D  *  F  C  T  V  K  D  *  L  I  M  L  F  D  Y  I  V  M  L  I  Y  S  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28607" stop="28395"/>
                    <exon start="28300" stop="28159"/>
                    <exon start="28086" stop="27806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSVAVFKGGDFGDVCTTAMQRVAKTVDAYLGEIATFGDLSISKFNGIAILVPKGARKADDDLYRAVDIYLKAHPHLDEIEREKVCSVMDPLKLSHEARVHASQNKRLPVQIVLHALYFDQLQADVSLVKENEVLRTELLKMKMYIADIQKTTNSSQGTSKGSLKKTTFFSSVSKTLGKFNPFKHGSKDTSSIVDDAALDLTKPRRRRFSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35945" PGL_stop="36501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35945" e_stop="36501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35945" e_stop="36501" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35945" stop="36489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36017" stop="36468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36171" stop="36501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTCTCAAAACAAACGTTTGCCGGTGCAAATAGTCCTTCATGCTCTCTATTTCGATCAACTAAAGATAAGGAGCGGAGCAGCAGATGATAGTAATAACAACATGCCCGAAGCCATGGCAACAAGGAATCAATTACAAGCTGATGTTTCCCTCGTAAAGGAAAATGAAGTTTTGAGAACGGAGTTGCTAAAGATGAAGATGTACATAGCAGATATACAGAAAACAACAAATTCTAGTCAAGGAACATCAAAAGGGAGTCTGAAGAAGACAACATTCTTCTCTTCTGTCTCCAAAACATTAGGCAAATTCAATCCCTTTAAACATGGATCAAAGGACACTTCTAGTATTGTTGATGATGCTGCTCTAGATCTTACTAAGCCTAGGAGAAGAAGATTTTCCATATCTTAAGCTATTTACATTATTTGGTTTAATTTTAGTTTTATGTTGTGTGAAAAAACTATGATTGATTTTGTACTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> A  S  Q  N  K  R  L  P  V  Q  I  V  L  H  A  L  Y  F  D  Q  L  K  I  R  S  G  A  A  D  D  S  N  N  N  M  P  E  A  M  A  T  R  N  Q  L  Q  A  D  V  S  L  V  K  E  N  E  V  L  R  T  E  L  L  K  M  K  M  Y  I  A  D  I  Q  K  T  T  N  S  S  Q  G  T  S  K  G  S  L  K  K  T  T  F  F  S  S  V  S  K  T  L  G  K  F  N  P  F  K  H  G  S  K  D  T  S  S  I  V  D  D  A  A  L  D  L  T  K  P  R  R  R  R  F  S  I  S  *  A  I  Y  I  I  W  F  N  F  S  F  M  L  C  E  K  T  M  I  D  F  V  L  *  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  L  L  K  T  N  V  C  R  C  K  *  S  F  M  L  S  I  S  I  N  *  R  *  G  A  E  Q  Q  M  I  V  I  T  T  C  P  K  P  W  Q  Q  G  I  N  Y  K  L  M  F  P  S  *  R  K  M  K  F  *  E  R  S  C  *  R  *  R  C  T  *  Q  I  Y  R  K  Q  Q  I  L  V  K  E  H  Q  K  G  V  *  R  R  Q  H  S  S  L  L  S  P  K  H  *  A  N  S  I  P  L  N  M  D  Q  R  T  L  L  V  L  L  M  M  L  L  *  I  L  L  S  L  G  E  E  D  F  P  Y  L  K  L  F  T  L  F  G  L  I  L  V  L  C  C  V  K  K  L  *  L  I  L  Y  C  K  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   F  S  K  Q  T  F  A  G  A  N  S  P  S  C  S  L  F  R  S  T  K  D  K  E  R  S  S  R  *  *  *  *  Q  H  A  R  S  H  G  N  K  E  S  I  T  S  *  C  F  P  R  K  G  K  *  S  F  E  N  G  V  A  K  D  E  D  V  H  S  R  Y  T  E  N  N  K  F  *  S  R  N  I  K  R  E  S  E  E  D  N  I  L  L  F  C  L  Q  N  I  R  Q  I  Q  S  L  *  T  W  I  K  G  H  F  *  Y  C  *  *  C  C  S  R  S  Y  *  A  *  E  K  K  I  F  H  I  L  S  Y  L  H  Y  L  V  *  F  *  F  Y  V  V  *  K  N  Y  D  *  F  C  T  V  K  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35945" stop="36352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASQNKRLPVQIVLHALYFDQLKIRSGAADDSNNNMPEAMATRNQLQADVSLVKENEVLRTELLKMKMYIADIQKTTNSSQGTSKGSLKKTTFFSSVSKTLGKFNPFKHGSKDTSSIVDDAALDLTKPRRRRFSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36532" PGL_stop="35968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36532" e_stop="35968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36532" e_stop="35968" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36532" stop="36031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36493" stop="35968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTACAGTACAAAATCAATCATAGTTTTTTCACACAACATAAAACTAAAATTAAACCAAATAATGTAAATAGCTTAAGATATGGAAAATCTTCTTCTCCTAGGCTTAGTAAGATCTAGAGCAGCATCATCAACAATACTAGAAGTGTCCTTTGATCCATGTTTAAAGGGATTGAATTTGCCTAATGTTTTGGAGACAGAAGAGAAGAATGTTGTCTTCTTCAGACTCCCTTTTGATGTTCCTTGACTAGAATTTGTTGTTTTCTGTATATCTGCTATGTACATCTTCATCTTTAGCAACTCCGTTCTCAAAACTTCATTTTCCTTTACGAGGGAAACATCAGCTTGTAATTGATTCCTTGTTGCCATGGCTTCGGGCATGTTGTTATTACTATCATCTGCTGCTCCGCTCCTTATCTTTAGTTGATCGAAATAGAGAGCATGAAGGACTATTTGCACC</gDNA_template>
            <first_frame> G  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  Q  Y  K  I  N  H  S  F  F  T  Q  H  K  T  K  I  K  P  N  N  V  N  S  L  R  Y  G  K  S  S  S  P  R  L  S  K  I  *  S  S  I  I  N  N  T  R  S  V  L  *  S  M  F  K  G  I  E  F  A  *  C  F  G  D  R  R  E  E  C  C  L  L  Q  T  P  F  *  C  S  L  T  R  I  C  C  F  L  Y  I  C  Y  V  H  L  H  L  *  Q  L  R  S  Q  N  F  I  F  L  Y  E  G  N  I  S  L  *  L  I  P  C  C  H  G  F  G  H  V  V  I  T  I  I  C  C  S  A  P  Y  L  *  L  I  E  I  E  S  M  K  D  Y  L  H  </first_frame>
            <second_frame>  G  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  Y  S  T  K  S  I  I  V  F  S  H  N  I  K  L  K  L  N  Q  I  M  *  I  A  *  D  M  E  N  L  L  L  L  G  L  V  R  S  R  A  A  S  S  T  I  L  E  V  S  F  D  P  C  L  K  G  L  N  L  P  N  V  L  E  T  E  E  K  N  V  V  F  F  R  L  P  F  D  V  P  *  L  E  F  V  V  F  C  I  S  A  M  Y  I  F  I  F  S  N  S  V  L  K  T  S  F  S  F  T  R  E  T  S  A  C  N  *  F  L  V  A  M  A  S  G  M  L  L  L  L  S  S  A  A  P  L  L  I  F  S  *  S  K  *  R  A  *  R  T  I  C  T </second_frame>
            <third_frame>   G  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  T  V  Q  N  Q  S  *  F  F  H  T  T  *  N  *  N  *  T  K  *  C  K  *  L  K  I  W  K  I  F  F  S  *  A  *  *  D  L  E  Q  H  H  Q  Q  Y  *  K  C  P  L  I  H  V  *  R  D  *  I  C  L  M  F  W  R  Q  K  R  R  M  L  S  S  S  D  S  L  L  M  F  L  D  *  N  L  L  F  S  V  Y  L  L  C  T  S  S  S  L  A  T  P  F  S  K  L  H  F  P  L  R  G  K  H  Q  L  V  I  D  S  L  L  P  W  L  R  A  C  C  Y  Y  Y  H  L  L  L  R  S  L  S  L  V  D  R  N  R  E  H  E  G  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36532" stop="36308"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFSLQYKINHSFFTQHKTKIKPNNVNSLRYGKSSSPRLSKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36176" stop="35970"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLFSVYLLCTSSSLATPFSKLHFPLRGKHQLVIDSLLPWLRACCYYYHLLLRSLSLVDRNREHEGLFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63535" PGL_stop="62861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63535" e_stop="62861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="63535" e_stop="62861" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63535" stop="62861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63535" stop="63134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCTCACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTACAAGGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCATATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  L  H  A  F  K  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  I  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  S  S  L  Y  D  R  F  E  F  K  I  L  I  T  I  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  Y  K  E  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  I  S  *  T  L </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  Y  M  H  S  S  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  S  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  T  R  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  H  R  L   </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  F  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  L  T  I  *  Q  I  *  I  Q  D  P  H  H  N  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  G  L  L  R  F  R  H  I  I  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63533" stop="63303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNYSFTCIQVFICCQIKTNLISSTKGENISTNVRIFAINLYAPRHKPYLISYGYTIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63083" stop="62862"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQDFMKCYVNVLFYSTCLIIMTILIICSFLLQGILYLESIGLLRFRHIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="63141" PGL_stop="64103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63141" e_stop="64103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="63141" e_stop="64103" e_length="963"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63141" stop="63818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63142" stop="63696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63146" stop="63599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63190" stop="63772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63548" stop="63955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63624" stop="64103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATCTGTCATATAGTGAGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGATATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGCCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACGGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAGAGTTTCTTGGTGATGAAACTTTATCTTGGTGCAATCAGGGCACTAGGGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCATTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGGGTTTATTCTATCCCGAGGAATCAAAGACAAAATTGATTGGTTACGCAAATGCAGAATATTTA</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  E  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  I  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  I  Q  *  S  F  K  N  S  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  P  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  I  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  G  H  L  T  N  N  I  I  P  D  I  C  F  A  V  N  L  L  A  R  F  I  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  G  L  F  Y  P  E  E  S  K  T  K  L  I  G  Y  A  N  A  E  Y  L </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  R  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  L  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  K  I  F  V  *  R  C  T  Y  T  E  K  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  R  V  S  W  *  *  N  F  I  L  V  Q  S  G  H  *  G  I  L  L  T  I  L  F  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  F  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  W  V  Y  S  I  P  R  N  Q  R  Q  N  *  L  V  T  Q  M  Q  N  I   </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  *  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  D  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  Y  P  I  K  L  Q  E  F  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  A  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  K  Y  L  S  N  G  A  H  T  L  K  N  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  R  A  S  Y  *  Q  Y  Y  S  R  Y  L  F  C  S  K  F  T  G  K  I  H  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  G  F  I  L  S  R  G  I  K  D  K  I  D  W  L  R  K  C  R  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0049C13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="72866" PGL_stop="71091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72866" e_stop="72574"/>
            <exon e_start="72439" e_stop="72342"/>
            <exon e_start="72239" e_stop="72191"/>
            <exon e_start="71200" e_stop="71091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.956" e_score="0.959"/>
          <exon-intron don_prob="0.730" acc_prob="0.982" e_score="0.969"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="0.939"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="72866" e_stop="72574" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="72573" i_stop="72440" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="72439" e_stop="72342" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.982">
            <gDNA_intron_boundary i_start="72341" i_stop="72240" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="72239" e_stop="72191" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="72190" i_stop="71201" i_length="990"/>
          </intron>
          <exon e_serial="4" e_score="0.927">
            <gDNA_exon_boundary e_start="71200" e_stop="71091" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72866" stop="72574"/>
              <exon start="72439" stop="72342"/>
              <exon start="72239" stop="72191"/>
              <exon start="71200" stop="71091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72866" stop="72574"/>
              <exon start="72439" stop="72342"/>
              <exon start="72239" stop="72191"/>
              <exon start="71200" stop="71129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72866" stop="72574"/>
              <exon start="72439" stop="72342"/>
              <exon start="72239" stop="72191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72866" stop="72687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCCATTGAAGCGTAAAACATAAATTAGCCCCTTCTCCTCTTTCTCTCTCTTCTCTGTGTTTTTTTTAAACGAGAAAGATAAAAGGTATTATCGCACTCGATTGCAACCCGTATTTCCCCAAACTCGCCGGCACTCGGCTGAGACCAAAACGACAAATTGGGGAAGAAAACCCTCCAAGAAAACCCACTTCATTCTCCAAAGCTACCTTCAAGTTACAAGGGATGAAGAGAACTAGCATCAAATCTCGCTCCAAAGGCACAATGGAGTTGATGAATGTTGTATCTGAAGA : ATTGGAGGTGAAATTTTCAAAACTTTGAAAACGGCTGCAGATCTGCTTTAAAAAGGTAAAAAAAACTTTGATAAAGAAGAGTTCTTTTTGTGATTCAG : ATTTTAATGTTGATGTAGGTTAGCCTCTGCCACTCTTACCAAATCTTTG : ATTTGGGCATGGGAGAGAGTTACCGTCCTTACGCCTCAGATTGTAGTAAAAAGAGATACAAGAAATATTTTCCCTGTTGGTTTACCAAGGGGTCCACATGCTGCTAGATG</gDNA_template>
            <first_frame> F  F  H  *  S  V  K  H  K  L  A  P  S  P  L  S  L  S  S  L  C  F  F  *  T  R  K  I  K  G  I  I  A  L  D  C  N  P  Y  F  P  K  L  A  G  T  R  L  R  P  K  R  Q  I  G  E  E  N  P  P  R  K  P  T  S  F  S  K  A  T  F  K  L  Q  G  M  K  R  T  S  I  K  S  R  S  K  G  T  M  E  L  M  N  V  V  S  E  E :   L  E  V  K  F  S  K  L  *  K  R  L  Q  I  C  F  K  K  V  K  K  T  L  I  K  K  S  S  F  C  D  S   : D  F  N  V  D  V  G  *  P  L  P  L  L  P  N  L  * :   F  G  H  G  R  E  L  P  S  L  R  L  R  L  *  *  K  E  I  Q  E  I  F  S  L  L  V  Y  Q  G  V  H  M  L  L  D  </first_frame>
            <second_frame>  F  S  I  E  A  *  N  I  N  *  P  L  L  L  F  L  S  L  L  C  V  F  F  K  R  E  R  *  K  V  L  S  H  S  I  A  T  R  I  S  P  N  S  P  A  L  G  *  D  Q  N  D  K  L  G  K  K  T  L  Q  E  N  P  L  H  S  P  K  L  P  S  S  Y  K  G  *  R  E  L  A  S  N  L  A  P  K  A  Q  W  S  *  *  M  L  Y  L  K   : N  W  R  *  N  F  Q  N  F  E  N  G  C  R  S  A  L  K  R  *  K  K  L  *  *  R  R  V  L  F  V  I  Q  :  I  L  M  L  M  *  V  S  L  C  H  S  Y  Q  I  F   : D  L  G  M  G  E  S  Y  R  P  Y  A  S  D  C  S  K  K  R  Y  K  K  Y  F  P  C  W  F  T  K  G  S  T  C  C  *  M </second_frame>
            <third_frame>   F  P  L  K  R  K  T  *  I  S  P  F  S  S  F  S  L  F  S  V  F  F  L  N  E  K  D  K  R  Y  Y  R  T  R  L  Q  P  V  F  P  Q  T  R  R  H  S  A  E  T  K  T  T  N  W  G  R  K  P  S  K  K  T  H  F  I  L  Q  S  Y  L  Q  V  T  R  D  E  E  N  *  H  Q  I  S  L  Q  R  H  N  G  V  D  E  C  C  I  *  R  :  I  G  G  E  I  F  K  T  L  K  T  A  A  D  L  L  *  K  G  K  K  N  F  D  K  E  E  F  F  L  *  F  R :   F  *  C  *  C  R  L  A  S  A  T  L  T  K  S  L  :  I  W  A  W  E  R  V  T  V  L  T  P  Q  I  V  V  K  R  D  T  R  N  I  F  P  V  G  L  P  R  G  P  H  A  A  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72794" stop="72574"/>
                    <exon start="72439" stop="72412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRKIKGIIALDCNPYFPKLAGTRLRPKRQIGEENPPRKPTSFSKATFKLQGMKRTSIKSRSKGTMELMNVVSEELEVKFSKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72840" stop="72628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPFSSFSLFSVFFLNEKDKRYYRTRLQPVFPQTRRHSAETKTTNWGRKPSKKTHFILQSYLQVTRDEEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="74406" PGL_stop="74971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74406" e_stop="74971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="74406" e_stop="74971" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74406" stop="74971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74445" stop="74960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAATTTGTTAACAGAAATACAAAGAAAATACCTCAATGAGGACGAAAGCAGAGCTTGTTTTCATTCCTTCTCCGGCAGCAGGTCACCTCATCTCTGCCGTTGAAATTGCAAAACTGATTCTCAACAGAGATGAGAGGCTCTGTATCTCTATCCTCATTATGAAGCTTCCAATGGATTTCGGTGTTCAATCTTACATCGAATCACTCTCATCTATACCCCGTTTGCAGTTCGTTGACATCACTGTTGACGAAAATACTATTGCTGGATTCATGTCAAATAAGGAGACCTTCTTCACGAACTTCGTTCGAAGTCATAAACCAAAAGTAAAAGATTTTTTAAATAACTCCAGCTTTTCTAGATCTGATTCTCGTCTTGCTGGCTTCGTTCTCGACATGTTCTGCACGTCAATGATAGACGTAGCTAATGAATTTTGTGTTCCTAGTTACATTTTCTTCACCTCAAATGCTGCTTTCCTTGCCCTCTGTTTTCATTTCGAGTCTCTGAAAAAGGAGCATCACGTCGATACCTCCAAATGCAAAAATTCAAATGAAGAATTAACAATCC</gDNA_template>
            <first_frame> T  N  L  L  T  E  I  Q  R  K  Y  L  N  E  D  E  S  R  A  C  F  H  S  F  S  G  S  R  S  P  H  L  C  R  *  N  C  K  T  D  S  Q  Q  R  *  E  A  L  Y  L  Y  P  H  Y  E  A  S  N  G  F  R  C  S  I  L  H  R  I  T  L  I  Y  T  P  F  A  V  R  *  H  H  C  *  R  K  Y  Y  C  W  I  H  V  K  *  G  D  L  L  H  E  L  R  S  K  S  *  T  K  S  K  R  F  F  K  *  L  Q  L  F  *  I  *  F  S  S  C  W  L  R  S  R  H  V  L  H  V  N  D  R  R  S  *  *  I  L  C  S  *  L  H  F  L  H  L  K  C  C  F  P  C  P  L  F  S  F  R  V  S  E  K  G  A  S  R  R  Y  L  Q  M  Q  K  F  K  *  R  I  N  N   </first_frame>
            <second_frame>  Q  I  C  *  Q  K  Y  K  E  N  T  S  M  R  T  K  A  E  L  V  F  I  P  S  P  A  A  G  H  L  I  S  A  V  E  I  A  K  L  I  L  N  R  D  E  R  L  C  I  S  I  L  I  M  K  L  P  M  D  F  G  V  Q  S  Y  I  E  S  L  S  S  I  P  R  L  Q  F  V  D  I  T  V  D  E  N  T  I  A  G  F  M  S  N  K  E  T  F  F  T  N  F  V  R  S  H  K  P  K  V  K  D  F  L  N  N  S  S  F  S  R  S  D  S  R  L  A  G  F  V  L  D  M  F  C  T  S  M  I  D  V  A  N  E  F  C  V  P  S  Y  I  F  F  T  S  N  A  A  F  L  A  L  C  F  H  F  E  S  L  K  K  E  H  H  V  D  T  S  K  C  K  N  S  N  E  E  L  T  I  </second_frame>
            <third_frame>   K  F  V  N  R  N  T  K  K  I  P  Q  *  G  R  K  Q  S  L  F  S  F  L  L  R  Q  Q  V  T  S  S  L  P  L  K  L  Q  N  *  F  S  T  E  M  R  G  S  V  S  L  S  S  L  *  S  F  Q  W  I  S  V  F  N  L  T  S  N  H  S  H  L  Y  P  V  C  S  S  L  T  S  L  L  T  K  I  L  L  L  D  S  C  Q  I  R  R  P  S  S  R  T  S  F  E  V  I  N  Q  K  *  K  I  F  *  I  T  P  A  F  L  D  L  I  L  V  L  L  A  S  F  S  T  C  S  A  R  Q  *  *  T  *  L  M  N  F  V  F  L  V  T  F  S  S  P  Q  M  L  L  S  L  P  S  V  F  I  S  S  L  *  K  R  S  I  T  S  I  P  P  N  A  K  I  Q  M  K  N  *  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74419" stop="74970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKYKENTSMRTKAELVFIPSPAAGHLISAVEIAKLILNRDERLCISILIMKLPMDFGVQSYIESLSSIPRLQFVDITVDENTIAGFMSNKETFFTNFVRSHKPKVKDFLNNSSFSRSDSRLAGFVLDMFCTSMIDVANEFCVPSYIFFTSNAAFLALCFHFESLKKEHHVDTSKCKNSNEELTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82159" PGL_stop="81573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82159" e_stop="81573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="82159" e_stop="81573" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82159" stop="81573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGAAAGGCCAATGTTGTGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATGGGGAGTCTTGCAGTGCTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAAATCCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGTGACAAAGTATTGAGAGGAGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTATTGCGGATCGGAGGCAAAATTTGTGTGCCCAAGACAGGAGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTATTGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGGCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  E  R  P  M  L  W  P  M  L  *  V  G  R  L  L  A  W  G  V  L  Q  C  L  V  L  W  R  D  H  W  L  E  M  C  R  Y  *  L  T  V  L  S  A  C  R  F  Q  K  R  V  M  G  *  L  L  L  L  R  L  D  L  L  *  S  S  K  S  V  H  T  S  L  M  M  K  N  Y  V  S  F  V  T  K  Y  *  E  E  K  L  R  R  L  S  L  I  L  M  V  Y  C  G  S  E  A  K  F  V  C  P  R  Q  E  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  R  E  R  R  R  C  I  M  I  *  V  S  I  I  V  V  W  D  E  E  R  Y  F  R  L  C  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  S  E  D  G  Y  S  Y  L  E  V  G  A  D  Y   </first_frame>
            <second_frame>  S  V  S  S  R  K  G  Q  C  C  G  R  C  S  E  *  E  D  S  *  H  G  E  S  C  S  A  *  Y  Y  G  E  T  I  G  *  R  C  A  D  I  S  *  Q  S  C  P  L  A  D  F  R  R  E  *  W  D  D  C  F  Y  *  G  S  I  F  F  S  R  A  N  P  C  T  P  V  *  *  *  K  I  M  S  H  S  *  Q  S  I  E  R  R  S  *  G  G  C  P  *  F  *  W  C  I  A  D  R  R  Q  N  L  C  A  Q  D  R  R  F  D  *  I  D  S  *  G  G  P  L  F  S  V  F  H  P  S  G  S  G  E  D  V  S  *  S  E  S  A  L  L  W  C  G  M  K  R  D  I  S  D  F  V  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  S  Q  R  M  A  I  P  T  W  K  W  E  R  I  T  </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  P  S  M  G  S  L  A  V  L  S  I  M  E  R  P  L  A  R  D  V  Q  I  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  R  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  K  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  C  G  V  G  *  R  E  I  F  Q  T  L  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  L  R  G  W  L  F  L  L  G  S  G  S  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82157" stop="81699"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTPSMGSLAVLSIMERPLARDVQILANSLVRLQISEESDGMIAFIEARSSLVEQIRAHQFDDEKLCLIRDKVLRGEAKEAVLDSDGVLRIGGKICVPKTGDLIRLILEEAHCSRYSIHPGAAKMYHDLSQHYCGVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83973" PGL_stop="84401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83973" e_stop="84401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="83973" e_stop="84401" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTTAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCTAGATGAGGCACCCTGAAACTGACCTGATATATACGAGCTCTTTTAGGGTCCCCAAACTTCTCTCTCTCCATCAATTTCGCCTCTTTGGCGACGCTCACAATAGACTGGAAAGAAGTCCCCTCCCTACATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAATGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</gDNA_template>
            <first_frame> V  N  R  T  S  P  D  L  G  H  K  N  P  *  M  S  G  H  P  *  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  V  I  P  Y  L  *  M  R  H  P  E  T  D  L  I  Y  T  S  S  F  R  V  P  K  L  L  S  L  H  Q  F  R  L  F  G  D  A  H  N  R  L  E  R  S  P  L  P  T  C  P  K  H  S  *  P  D  R  E  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  C  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  N  H  P  V  S  D  S  Q  T  S  S </first_frame>
            <second_frame>  *  T  V  R  A  L  T  W  A  I  R  T  P  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  T  *  Y  I  R  A  L  L  G  S  P  N  F  S  L  S  I  N  F  A  S  L  A  T  L  T  I  D  W  K  E  V  P  S  L  H  V  R  N  T  A  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  E  T  I  L  S  Q  T  L  K  P  Q   </second_frame>
            <third_frame>   E  P  Y  E  P  *  P  G  P  *  E  P  L  D  V  W  P  P  L  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  L  D  E  A  P  *  N  *  P  D  I  Y  E  L  F  *  G  P  Q  T  S  L  S  P  S  I  S  P  L  W  R  R  S  Q  *  T  G  K  K  S  P  P  Y  M  S  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  M  H  A  *  T  T  G  K  N  A  P  H  T  L  *  P  K  P  S  C  L  R  L  S  N  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84133" stop="84399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIRALLGSPNFSLSINFASLATLTIDWKEVPSLHVRNTADLIEKVNPLTNLRILSVSFGIMANACLDNWQKRASYSVTETILSQTLKPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84820" PGL_stop="85122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84820" e_stop="85122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="84820" e_stop="85122" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84820" stop="85122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTCTGAGCCCCCTCTCTAGTACGGGAGTCATATGGTGTGGTAATTTCACCACCACCCTGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGTGTATCCTGAAGCAAAGGTGTGACTATGGGATCTGGAGGAACCTGGTCCTCTCTGTCATCAATCTGAGGTTTGGTAGAGACCTCTCTAGCAAGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACTACTAGCACGACCTCTTGCTCGAGATCTACCCCTACCCCTAGTTGGGGCCTCAACAACTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  G  V  I  W  C  G  N  F  T  T  T  L  R  K  A  L  *  H  T  *  H  P  Q  *  C  I  L  K  Q  R  C  D  Y  G  I  W  R  N  L  V  L  S  V  I  N  L  R  F  G  R  D  L  S  S  K  T  S  H  W  C  C  S  T  S  T  T  S  G  Y  C  R  T  T  S  T  T  S  C  S  R  S  T  P  T  P  S  W  G  L  N  N  C </first_frame>
            <second_frame>  *  V  *  A  P  S  L  V  R  E  S  Y  G  V  V  I  S  P  P  P  *  E  K  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  V  T  M  G  S  G  G  T  W  S  S  L  S  S  I  *  G  L  V  E  T  S  L  A  R  P  L  T  G  A  A  P  R  P  R  P  L  A  T  V  V  L  L  A  R  P  L  A  R  D  L  P  L  P  L  V  G  A  S  T  T   </second_frame>
            <third_frame>   R  S  E  P  P  L  *  Y  G  S  H  M  V  W  *  F  H  H  H  P  E  K  S  P  L  A  H  L  T  P  S  I  V  Y  P  E  A  K  V  *  L  W  D  L  E  E  P  G  P  L  C  H  Q  S  E  V  W  *  R  P  L  *  Q  D  L  S  L  V  L  L  H  V  H  D  L  W  L  L  S  Y  Y  *  H  D  L  L  L  E  I  Y  P  Y  P  *  L  G  P  Q  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84919" stop="85122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILKQRCDYGIWRNLVLSVINLRFGRDLSSKTSHWCCSTSTTSGYCRTTSTTSCSRSTPTPSWGLNNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97721" PGL_stop="99509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97721" e_stop="99509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97721" e_stop="99509" e_length="1789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97721" stop="98286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97739" stop="98365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97746" stop="98587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97746" stop="98480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97750" stop="98301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97752" stop="98218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97752" stop="98030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97941" stop="98541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97941" stop="98522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97941" stop="98444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="99015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98794" stop="99509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692544" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98916" stop="99374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGCTCTCTCAAATACAGAGCAATGGAGACCAAAGCAGAGCTTGTTTTCATTCCATCGCCGGGATTGGGTCACGTCGCTTCCGCTGTCGAATTCGCCAAACTCCTCCTTGCTACAAATGAACGACTATGCATTTCTCTTCTCGTCATGAAACATCCTGCTGATTTTGGTGTTCAATCTTATCTCCAATCACTCCCTTCTCTGTCCCGTTTTCGCTTCGTTGATGTTTCAATTGACCCGAAATTAGTTGTTCCACTTTTGTCTAACAAGGACAGATTCTTATACGATTTCATTGATGGTCACAAACACAAGGTAAGTGAATTTGTTACTAGTAATAATTCCACCCCTTCCCAATTTGGCTCTACTCAGCTTGCTGGCTTTGTTCTTGACATGTTCTGCATCTCCATGATTGATGTAGCTAATGAATTTTGTGTTCCTAGTTATATTTTCTTTACTTCTGCTGCTGCTTTTCTAGCCCTGTCCTTTCATTTTGAAGCTTTGAGGAATAACTTCAAGTTCGATTATTCCGAGTCTGATGAGGAATTATCGATTCTCGGATTTAAAAATCCGTATCCTGCTAAAGTTTTACCTAGACCAGCTAAAGCAATTACACCAAGCTCGACTTTGTACTACGATGGGATTCGTCGTTTTAGAGAGACCAAAGGTATTGTTATCAATACGTTTGCGGAGCTTGAACCTTTTGCTCTTCAGTCATTGTCTGATGCTAAAATGGCTCCTCCGATTTATCCCATTCATGCTGTATTCAATTCGGATGATAATGAGGAAAAACAGGAAATAGAAAGTATTGTGGAGTGGTTAGATAATCAGCCAAACTCATCTGTAGTGTTCTTGTGCTTTGGAACCATGGGTAGTTTTGAACCTGAGCAGGTAAAGGAGATAGCAATTGCGTTAGAGCATAGTGGGCACCGGTTCTTGTGGTCTTTACGAAGGCCTCCACCAAAGGGGAAAATAGAAATGCCAAGCAATTATGACAATTCGGAGGAAGTGCTGCCTGAAGGGTTCTTGGAGAGGACAAAAGGAATTGGGAAACTGGTAGGATGGGCACCACAAGTGACTGTACTTTCACATCCTGCGGTGGGGGTATTCGTGTCACATTGTGGATGGAATTCGACAATGGAGAGTGTGTGTTGTGGGGTGCCTATTGCTGCTTGGCCGTTGTATGCTGAACAACAGATGAATGCGTTTTTGTTGGTTAAGGAATTGGGTTTGGCAGTGGAGATTCGGATGGACTATGTGAAGGACTTTGAGGGGAAAAATCCAGTTGATATAGTTACTGCTGAGGAAATTGAAGGCGCCATACAGAAGCTTATGGAGAATGGTGAAGAGAATGAAGTGAGGAAAAGAGTGAAGGAAATGCGAGAGAAGAGCAGAAAAGCCATGGAAGAAGGCGGATCGTCTTATACCTCTTTACGACTTCTAATTGACGATTTCATCAGCAACATCTCCTGAAAAATTTCCGCAAAAAGATCTTCAGCAATGGTAGGTTTTTCACTGGATGCTCAGAACATAAACTTTTAAATGCATTATGACCAAAGTTTTCTATGTTGATATTTGTTGTTGTTGCATATTTTTAGTGTAATTATAGTTAGTATTGGCAGTTCATGCGCAGTCAAAAGATATTTTCCTTGATCATAATTTTTCAACTATTTTGTAAATATTTGGATTTTTAAGTATTGTGGCTTACTGTAGTTTCTAAATGTATAAATTTTATTTCAATGATATCAAATTCTATGTCTGAATCACATCAAACATTAATAAGTTTGACCCTC</gDNA_template>
            <first_frame> S  A  L  S  N  T  E  Q  W  R  P  K  Q  S  L  F  S  F  H  R  R  D  W  V  T  S  L  P  L  S  N  S  P  N  S  S  L  L  Q  M  N  D  Y  A  F  L  F  S  S  *  N  I  L  L  I  L  V  F  N  L  I  S  N  H  S  L  L  C  P  V  F  A  S  L  M  F  Q  L  T  R  N  *  L  F  H  F  C  L  T  R  T  D  S  Y  T  I  S  L  M  V  T  N  T  R  *  V  N  L  L  L  V  I  I  P  P  L  P  N  L  A  L  L  S  L  L  A  L  F  L  T  C  S  A  S  P  *  L  M  *  L  M  N  F  V  F  L  V  I  F  S  L  L  L  L  L  L  F  *  P  C  P  F  I  L  K  L  *  G  I  T  S  S  S  I  I  P  S  L  M  R  N  Y  R  F  S  D  L  K  I  R  I  L  L  K  F  Y  L  D  Q  L  K  Q  L  H  Q  A  R  L  C  T  T  M  G  F  V  V  L  E  R  P  K  V  L  L  S  I  R  L  R  S  L  N  L  L  L  F  S  H  C  L  M  L  K  W  L  L  R  F  I  P  F  M  L  Y  S  I  R  M  I  M  R  K  N  R  K  *  K  V  L  W  S  G  *  I  I  S  Q  T  H  L  *  C  S  C  A  L  E  P  W  V  V  L  N  L  S  R  *  R  R  *  Q  L  R  *  S  I  V  G  T  G  S  C  G  L  Y  E  G  L  H  Q  R  G  K  *  K  C  Q  A  I  M  T  I  R  R  K  C  C  L  K  G  S  W  R  G  Q  K  E  L  G  N  W  *  D  G  H  H  K  *  L  Y  F  H  I  L  R  W  G  Y  S  C  H  I  V  D  G  I  R  Q  W  R  V  C  V  V  G  C  L  L  L  L  G  R  C  M  L  N  N  R  *  M  R  F  C  W  L  R  N  W  V  W  Q  W  R  F  G  W  T  M  *  R  T  L  R  G  K  I  Q  L  I  *  L  L  L  R  K  L  K  A  P  Y  R  S  L  W  R  M  V  K  R  M  K  *  G  K  E  *  R  K  C  E  R  R  A  E  K  P  W  K  K  A  D  R  L  I  P  L  Y  D  F  *  L  T  I  S  S  A  T  S  P  E  K  F  P  Q  K  D  L  Q  Q  W  *  V  F  H  W  M  L  R  T  *  T  F  K  C  I  M  T  K  V  F  Y  V  D  I  C  C  C  C  I  F  L  V  *  L  *  L  V  L  A  V  H  A  Q  S  K  D  I  F  L  D  H  N  F  S  T  I  L  *  I  F  G  F  L  S  I  V  A  Y  C  S  F  *  M  Y  K  F  Y  F  N  D  I  K  F  Y  V  *  I  T  S  N  I  N  K  F  D  P  </first_frame>
            <second_frame>  L  L  S  Q  I  Q  S  N  G  D  Q  S  R  A  C  F  H  S  I  A  G  I  G  S  R  R  F  R  C  R  I  R  Q  T  P  P  C  Y  K  *  T  T  M  H  F  S  S  R  H  E  T  S  C  *  F  W  C  S  I  L  S  P  I  T  P  F  S  V  P  F  S  L  R  *  C  F  N  *  P  E  I  S  C  S  T  F  V  *  Q  G  Q  I  L  I  R  F  H  *  W  S  Q  T  Q  G  K  *  I  C  Y  *  *  *  F  H  P  F  P  I  W  L  Y  S  A  C  W  L  C  S  *  H  V  L  H  L  H  D  *  C  S  *  *  I  L  C  S  *  L  Y  F  L  Y  F  C  C  C  F  S  S  P  V  L  S  F  *  S  F  E  E  *  L  Q  V  R  L  F  R  V  *  *  G  I  I  D  S  R  I  *  K  S  V  S  C  *  S  F  T  *  T  S  *  S  N  Y  T  K  L  D  F  V  L  R  W  D  S  S  F  *  R  D  Q  R  Y  C  Y  Q  Y  V  C  G  A  *  T  F  C  S  S  V  I  V  *  C  *  N  G  S  S  D  L  S  H  S  C  C  I  Q  F  G  *  *  *  G  K  T  G  N  R  K  Y  C  G  V  V  R  *  S  A  K  L  I  C  S  V  L  V  L  W  N  H  G  *  F  *  T  *  A  G  K  G  D  S  N  C  V  R  A  *  W  A  P  V  L  V  V  F  T  K  A  S  T  K  G  E  N  R  N  A  K  Q  L  *  Q  F  G  G  S  A  A  *  R  V  L  G  E  D  K  R  N  W  E  T  G  R  M  G  T  T  S  D  C  T  F  T  S  C  G  G  G  I  R  V  T  L  W  M  E  F  D  N  G  E  C  V  L  W  G  A  Y  C  C  L  A  V  V  C  *  T  T  D  E  C  V  F  V  G  *  G  I  G  F  G  S  G  D  S  D  G  L  C  E  G  L  *  G  E  K  S  S  *  Y  S  Y  C  *  G  N  *  R  R  H  T  E  A  Y  G  E  W  *  R  E  *  S  E  E  K  S  E  G  N  A  R  E  E  Q  K  S  H  G  R  R  R  I  V  L  Y  L  F  T  T  S  N  *  R  F  H  Q  Q  H  L  L  K  N  F  R  K  K  I  F  S  N  G  R  F  F  T  G  C  S  E  H  K  L  L  N  A  L  *  P  K  F  S  M  L  I  F  V  V  V  A  Y  F  *  C  N  Y  S  *  Y  W  Q  F  M  R  S  Q  K  I  F  S  L  I  I  I  F  Q  L  F  C  K  Y  L  D  F  *  V  L  W  L  T  V  V  S  K  C  I  N  F  I  S  M  I  S  N  S  M  S  E  S  H  Q  T  L  I  S  L  T  L </second_frame>
            <third_frame>   C  S  L  K  Y  R  A  M  E  T  K  A  E  L  V  F  I  P  S  P  G  L  G  H  V  A  S  A  V  E  F  A  K  L  L  L  A  T  N  E  R  L  C  I  S  L  L  V  M  K  H  P  A  D  F  G  V  Q  S  Y  L  Q  S  L  P  S  L  S  R  F  R  F  V  D  V  S  I  D  P  K  L  V  V  P  L  L  S  N  K  D  R  F  L  Y  D  F  I  D  G  H  K  H  K  V  S  E  F  V  T  S  N  N  S  T  P  S  Q  F  G  S  T  Q  L  A  G  F  V  L  D  M  F  C  I  S  M  I  D  V  A  N  E  F  C  V  P  S  Y  I  F  F  T  S  A  A  A  F  L  A  L  S  F  H  F  E  A  L  R  N  N  F  K  F  D  Y  S  E  S  D  E  E  L  S  I  L  G  F  K  N  P  Y  P  A  K  V  L  P  R  P  A  K  A  I  T  P  S  S  T  L  Y  Y  D  G  I  R  R  F  R  E  T  K  G  I  V  I  N  T  F  A  E  L  E  P  F  A  L  Q  S  L  S  D  A  K  M  A  P  P  I  Y  P  I  H  A  V  F  N  S  D  D  N  E  E  K  Q  E  I  E  S  I  V  E  W  L  D  N  Q  P  N  S  S  V  V  F  L  C  F  G  T  M  G  S  F  E  P  E  Q  V  K  E  I  A  I  A  L  E  H  S  G  H  R  F  L  W  S  L  R  R  P  P  P  K  G  K  I  E  M  P  S  N  Y  D  N  S  E  E  V  L  P  E  G  F  L  E  R  T  K  G  I  G  K  L  V  G  W  A  P  Q  V  T  V  L  S  H  P  A  V  G  V  F  V  S  H  C  G  W  N  S  T  M  E  S  V  C  C  G  V  P  I  A  A  W  P  L  Y  A  E  Q  Q  M  N  A  F  L  L  V  K  E  L  G  L  A  V  E  I  R  M  D  Y  V  K  D  F  E  G  K  N  P  V  D  I  V  T  A  E  E  I  E  G  A  I  Q  K  L  M  E  N  G  E  E  N  E  V  R  K  R  V  K  E  M  R  E  K  S  R  K  A  M  E  E  G  G  S  S  Y  T  S  L  R  L  L  I  D  D  F  I  S  N  I  S  *  K  I  S  A  K  R  S  S  A  M  V  G  F  S  L  D  A  Q  N  I  N  F  *  M  H  Y  D  Q  S  F  L  C  *  Y  L  L  L  L  H  I  F  S  V  I  I  V  S  I  G  S  S  C  A  V  K  R  Y  F  P  *  S  *  F  F  N  Y  F  V  N  I  W  I  F  K  Y  C  G  L  L  *  F  L  N  V  *  I  L  F  Q  *  Y  Q  I  L  C  L  N  H  I  K  H  *  *  V  *  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97723" stop="99189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSLKYRAMETKAELVFIPSPGLGHVASAVEFAKLLLATNERLCISLLVMKHPADFGVQSYLQSLPSLSRFRFVDVSIDPKLVVPLLSNKDRFLYDFIDGHKHKVSEFVTSNNSTPSQFGSTQLAGFVLDMFCISMIDVANEFCVPSYIFFTSAAAFLALSFHFEALRNNFKFDYSESDEELSILGFKNPYPAKVLPRPAKAITPSSTLYYDGIRRFRETKGIVINTFAELEPFALQSLSDAKMAPPIYPIHAVFNSDDNEEKQEIESIVEWLDNQPNSSVVFLCFGTMGSFEPEQVKEIAIALEHSGHRFLWSLRRPPPKGKIEMPSNYDNSEEVLPEGFLERTKGIGKLVGWAPQVTVLSHPAVGVFVSHCGWNSTMESVCCGVPIAAWPLYAEQQMNAFLLVKELGLAVEIRMDYVKDFEGKNPVDIVTAEEIEGAIQKLMENGEENEVRKRVKEMREKSRKAMEEGGSSYTSLRLLIDDFISNIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="101064" PGL_stop="99425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101064" e_stop="99425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="101064" e_stop="99425" e_length="1640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101064" stop="100299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101063" stop="100502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100663" stop="100065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100662" stop="100200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100126" stop="99425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99955" stop="99425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99941" stop="99425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACTTGAGATGGCAAAGGTCCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTGTGACAACAAACTCAGCTCTTATATTGAATCAGTCTCGACAAACCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAAGATGAGTCCATCTTACAGTCAATCACAAACACAACTTTCATCACATTTTTATCCAGTCATAAGCCTCAAGTCAGAAATTCAGTGATTGAAATCTTGAATTCAGGATCAAATCGTCTTGCGGCCCTCGTTATTGACATGATGTGTACAGCAATGATAGACGTTGCCAATGAATTTGGACTCCCGACTTATGTTTTCTACACATCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGAGTCTCAGGGATGATTTTAACGAAGATGTGACAGATTACGAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATTTCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTCGAGAAGCTAAAGCTATTCTTGTTAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAAATCCCACTTGTATACCCAGTCGGACCCTTGCTAAACCTTGATAACGATCAGGTTAACAATCAAGATTCTTCTCAGCATCAAACTATAATCAACTGGTTAGATGATCAACCTGATTCATCAGTAGTGTACCTCTGCTTCGGAAGCTTAGGAAGCTTCAACGAGGAGCAAATAAAGGAAATTGCATATGCTCTGGAGAAGAGCGGATGTCGATTCTTGTGGTCCTTAAAGAAGCCTTTGGCTAAAGATACATTTTTTCCAGCTGCTTATGATAATCCAGAGGATGTTTTGCCTGAGGGGTTCTTGCAAAGGACGGAAGCAATTGGGAAGGTGATAGGATGGGCACCCCAGGTGGCTATCTTGAGTCATGATGCTGTAGGAGGCTTTGTGTCACACTGTGGGTGGAATTCGACTTTAGAGAGCATGTGGTTCGGAGTACCACTGGCAACTTGGCCAATCTATTCGGAGCAGCAAGCGAATGCATTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGAGGGACCGAATCGAATGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGCTGATGGAGCCTGAAAATGAAATAAGGTTGAAAGTGAAAGGCATGAAGGAAAAGAGCAGATTGGTGCTCAAAGAAGGTGGATCTTCCTACAATGCTGTTGGACATTTTATCGAACAAGTGATGGACATCACAAATTGAGAAACAATCTTTAAAACAGCGATATAATTATTCGAAAACAATAAAATTTCTTCTACAGTTCGATTTGGTCTTCTTCTAGACCACTGCATTCTTATTTTAGTTATTATGTAGTTCTCATGTAAAAATTTTCAGTCCAAGAGTACTGTATTAAAGTGGGAGTACGAGGGTCAAACTTATTAATGTTTGATGTGATTCAGACATAGAATTTGATATCATTGAAATAAAATTTATACATTTAGAAACTACA</gDNA_template>
            <first_frame> H  T  *  D  G  K  G  P  N  S  *  R  *  T  S  R  H  Y  S  P  R  N  Q  A  A  L  *  Q  Q  T  Q  L  L  Y  *  I  S  L  D  K  P  K  L  Q  L  S  N  E  V  H  *  T  P  S  R  *  V  H  L  T  V  N  H  K  H  N  F  H  H  I  F  I  Q  S  *  A  S  S  Q  K  F  S  D  *  N  L  E  F  R  I  K  S  S  C  G  P  R  Y  *  H  D  V  Y  S  N  D  R  R  C  Q  *  I  W  T  P  D  L  C  F  L  H  I  W  C  C  H  A  W  S  S  A  S  F  A  E  S  Q  G  *  F  *  R  R  C  D  R  L  R  G  *  S  R  S  R  A  F  G  D  N  V  W  K  P  I  S  S  *  M  F  A  I  Y  S  L  *  Q  G  W  W  F  H  N  V  P  *  S  F  *  K  A  S  R  S  *  S  Y  S  C  *  H  F  L  R  I  R  I  S  C  C  Q  I  P  L  P  R  *  E  N  P  T  C  I  P  S  R  T  L  A  K  P  *  *  R  S  G  *  Q  S  R  F  F  S  A  S  N  Y  N  Q  L  V  R  *  S  T  *  F  I  S  S  V  P  L  L  R  K  L  R  K  L  Q  R  G  A  N  K  G  N  C  I  C  S  G  E  E  R  M  S  I  L  V  V  L  K  E  A  F  G  *  R  Y  I  F  S  S  C  L  *  *  S  R  G  C  F  A  *  G  V  L  A  K  D  G  S  N  W  E  G  D  R  M  G  T  P  G  G  Y  L  E  S  *  C  C  R  R  L  C  V  T  L  W  V  E  F  D  F  R  E  H  V  V  R  S  T  T  G  N  L  A  N  L  F  G  A  A  S  E  C  I  S  I  G  E  G  F  R  D  S  S  G  D  *  D  G  L  *  E  G  S  Q  R  D  R  I  E  C  Y  S  K  S  R  G  D  R  E  S  N  K  A  A  D  G  A  *  K  *  N  K  V  E  S  E  R  H  E  G  K  E  Q  I  G  A  Q  R  R  W  I  F  L  Q  C  C  W  T  F  Y  R  T  S  D  G  H  H  K  L  R  N  N  L  *  N  S  D  I  I  I  R  K  Q  *  N  F  F  Y  S  S  I  W  S  S  S  R  P  L  H  S  Y  F  S  Y  Y  V  V  L  M  *  K  F  S  V  Q  E  Y  C  I  K  V  G  V  R  G  S  N  L  L  M  F  D  V  I  Q  T  *  N  L  I  S  L  K  *  N  L  Y  I  *  K  L   </first_frame>
            <second_frame>  T  L  E  M  A  K  V  L  I  A  R  D  E  H  L  V  I  T  V  L  V  I  K  L  P  C  D  N  K  L  S  S  Y  I  E  S  V  S  T  N  P  N  Y  N  S  Q  M  K  F  I  E  L  P  Q  D  E  S  I  L  Q  S  I  T  N  T  T  F  I  T  F  L  S  S  H  K  P  Q  V  R  N  S  V  I  E  I  L  N  S  G  S  N  R  L  A  A  L  V  I  D  M  M  C  T  A  M  I  D  V  A  N  E  F  G  L  P  T  Y  V  F  Y  T  S  G  A  A  M  L  G  L  Q  L  H  L  Q  S  L  R  D  D  F  N  E  D  V  T  D  Y  E  D  D  P  E  A  E  L  S  V  T  T  Y  G  N  P  F  P  A  K  C  L  P  S  I  A  F  D  K  D  G  G  S  T  M  Y  L  D  L  S  K  R  L  R  E  A  K  A  I  L  V  N  T  F  S  E  F  E  S  H  A  V  K  S  L  S  L  D  E  K  I  P  L  V  Y  P  V  G  P  L  L  N  L  D  N  D  Q  V  N  N  Q  D  S  S  Q  H  Q  T  I  I  N  W  L  D  D  Q  P  D  S  S  V  V  Y  L  C  F  G  S  L  G  S  F  N  E  E  Q  I  K  E  I  A  Y  A  L  E  K  S  G  C  R  F  L  W  S  L  K  K  P  L  A  K  D  T  F  F  P  A  A  Y  D  N  P  E  D  V  L  P  E  G  F  L  Q  R  T  E  A  I  G  K  V  I  G  W  A  P  Q  V  A  I  L  S  H  D  A  V  G  G  F  V  S  H  C  G  W  N  S  T  L  E  S  M  W  F  G  V  P  L  A  T  W  P  I  Y  S  E  Q  Q  A  N  A  F  Q  L  V  K  D  L  E  I  A  V  E  I  K  M  D  Y  R  K  D  L  R  G  T  E  S  N  V  I  V  K  A  E  E  I  E  K  A  I  K  Q  L  M  E  P  E  N  E  I  R  L  K  V  K  G  M  K  E  K  S  R  L  V  L  K  E  G  G  S  S  Y  N  A  V  G  H  F  I  E  Q  V  M  D  I  T  N  *  E  T  I  F  K  T  A  I  *  L  F  E  N  N  K  I  S  S  T  V  R  F  G  L  L  L  D  H  C  I  L  I  L  V  I  M  *  F  S  C  K  N  F  Q  S  K  S  T  V  L  K  W  E  Y  E  G  Q  T  Y  *  C  L  M  *  F  R  H  R  I  *  Y  H  *  N  K  I  Y  T  F  R  N  Y  </second_frame>
            <third_frame>   H  L  R  W  Q  R  S  *  *  L  E  M  N  I  S  S  L  Q  S  S  *  S  S  C  L  V  T  T  N  S  A  L  I  L  N  Q  S  R  Q  T  Q  T  T  T  L  K  *  S  S  L  N  S  L  K  M  S  P  S  Y  S  Q  S  Q  T  Q  L  S  S  H  F  Y  P  V  I  S  L  K  S  E  I  Q  *  L  K  S  *  I  Q  D  Q  I  V  L  R  P  S  L  L  T  *  C  V  Q  Q  *  *  T  L  P  M  N  L  D  S  R  L  M  F  S  T  H  L  V  L  P  C  L  V  F  S  F  I  C  R  V  S  G  M  I  L  T  K  M  *  Q  I  T  R  M  I  Q  K  Q  S  F  R  *  Q  R  M  E  T  H  F  Q  L  N  V  C  H  L  *  P  L  T  R  M  V  V  P  Q  C  T  L  I  F  L  K  G  F  E  K  L  K  L  F  L  L  T  L  S  P  N  S  N  L  M  L  S  N  P  S  P  S  M  R  K  S  H  L  Y  T  Q  S  D  P  C  *  T  L  I  T  I  R  L  T  I  K  I  L  L  S  I  K  L  *  S  T  G  *  M  I  N  L  I  H  Q  *  C  T  S  A  S  E  A  *  E  A  S  T  R  S  K  *  R  K  L  H  M  L  W  R  R  A  D  V  D  S  C  G  P  *  R  S  L  W  L  K  I  H  F  F  Q  L  L  M  I  I  Q  R  M  F  C  L  R  G  S  C  K  G  R  K  Q  L  G  R  *  *  D  G  H  P  R  W  L  S  *  V  M  M  L  *  E  A  L  C  H  T  V  G  G  I  R  L  *  R  A  C  G  S  E  Y  H  W  Q  L  G  Q  S  I  R  S  S  K  R  M  H  F  N  W  *  R  I  *  R  *  Q  W  R  L  R  W  I  I  G  R  I  S  E  G  P  N  R  M  L  *  *  K  Q  R  R  *  R  K  Q  *  S  S  *  W  S  L  K  M  K  *  G  *  K  *  K  A  *  R  K  R  A  D  W  C  S  K  K  V  D  L  P  T  M  L  L  D  I  L  S  N  K  *  W  T  S  Q  I  E  K  Q  S  L  K  Q  R  Y  N  Y  S  K  T  I  K  F  L  L  Q  F  D  L  V  F  F  *  T  T  A  F  L  F  *  L  L  C  S  S  H  V  K  I  F  S  P  R  V  L  Y  *  S  G  S  T  R  V  K  L  I  N  V  *  C  D  S  D  I  E  F  D  I  I  E  I  K  F  I  H  L  E  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101063" stop="99672"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEMAKVLIARDEHLVITVLVIKLPCDNKLSSYIESVSTNPNYNSQMKFIELPQDESILQSITNTTFITFLSSHKPQVRNSVIEILNSGSNRLAALVIDMMCTAMIDVANEFGLPTYVFYTSGAAMLGLQLHLQSLRDDFNEDVTDYEDDPEAELSVTTYGNPFPAKCLPSIAFDKDGGSTMYLDLSKRLREAKAILVNTFSEFESHAVKSLSLDEKIPLVYPVGPLLNLDNDQVNNQDSSQHQTIINWLDDQPDSSVVYLCFGSLGSFNEEQIKEIAYALEKSGCRFLWSLKKPLAKDTFFPAAYDNPEDVLPEGFLQRTEAIGKVIGWAPQVAILSHDAVGGFVSHCGWNSTLESMWFGVPLATWPIYSEQQANAFQLVKDLEIAVEIKMDYRKDLRGTESNVIVKAEEIEKAIKQLMEPENEIRLKVKGMKEKSRLVLKEGGSSYNAVGHFIEQVMDITN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 205 chains have been computed
$ 
$ memory statistics:
$ 253864 bytes spliced alignments in total
$ 69 spliced alignments have been stored
$ 3679 bytes was the average size of a spliced alignment
$ 22712 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1514 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 263 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:38:01
-->
