<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:31:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702539" ref_strand="+" ref_description="SGN-E702539 [FA19AA07]">
      <seq>gtgtcaagggccacagcagaaatgtctggcttaaaggaactcaccacaaatcacagaaggttagctgaaatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatgggcacaacgatcagaacgaaagtgcttcactatgttcatatattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1" stop="2603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="47" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="139" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48" i_stop="1368" i_length="1321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1369" g_stop="1496" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="267" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1596" g_stop="2303" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="975" r_length="708" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E702539" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="47"/>
          <exon e_start="1369" e_stop="1496"/>
          <exon e_start="1596" e_stop="2303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGTAAACCATTTTAAGCAACTTGTTATTCTCCTCTGATGCGTCTGCAAATTCACCGCCTTTAATTATTTAAAAACTCAAAATGATTATCACTCTTGCATTAATACTTTATGGCTGAAAAGGTTATTGTACATATTCAGTGGTTATTACTTTGGATATCACTCAAAATCTTCAGCTCTACCATTACTAGGAATAGGGTTATTTTCCGGGCATCGTTGCGCGTTATTGTTCTTAAAATAATAATTTTAGTACTATCTTAGGAGGAATATTTAGAAGAAAACGCTAAAGAAGATATTGTCCTCTTTCTGATTCTATGATGATACTGTGATGCATGTTCTAACTCTCTAAACAATATCAATCCTTTAAAGAATCTCATTCTGAAAATTTCAGTTGATGAAGAGTTTGTAAGGTATATCTAAAGAAAAAAGAAATAAAGATGCCCTAGAATCTACTGTGGATGCCAGACAATCTGGACAGATGATATTAACAGAATAACCAGACTTACAATGATGACAATACCTTTTATTGATTAGAACCCCCCAGTAAACTTTATTTGACACTACAACATTGGTTGGATGTGTATGAGATCTGGCCTTATCGTTTCTAAGCTATCTCTTGTGCATTTCCTAGGACTAGTTACTTATTTCTCAAGTATTTTCTAATTGTTATTGATGCTGCCCTGATTGATTTACATGAGGTTCTTGTTGTCTAACTTGATGTGGTTGACTTTCTTCTATGAAAGACGATCTCTCCTGCTCTCCCGGGGGATCCAGAGACCTTAATAACTTCAAGGGTTAGTCCAGGAAATATGCTTGATTAGCAACAGGTTATGTGATGAGGTCATTACTGTTTAAATATTCTTCCTACTTTTCATTTCGGGTTTCTGAGATCTTCTCAGCATTTATCAGATTTGTATGCTTTCTGAAAAAAATGTGAGACTCTGTACAACTGTTTTGTGAAATGGTACACTTAACAATGGATACACCAAAAAAAGAGAGAAAACTGACAAGATTGGACTAGGTATGCGCTTTCCCAGGCTTACAAAAAAGAGCAAGACTAGATTAGATCTTTGCTTTCCCAAGTTTGTAGAGACTGATAATATTAGATTGTTATTTCTACCATCAACACTTCCTTTTCCTAATAGTTTAGCTTAGATCAATTGATGATTGATTCTTTTATAGCACTTCCAAATATGAGTCCTCTGTTTGTCAATCTAATCATTTACCCTTGTTCTTCTTCTAACTTGCTTCTCTTAATCGCAATTTCTATTATACCTTCTCCTTTGCTTCTTTATATTAGCCTCCTAATAGAACTTCTAATGCAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACC</genome_strand>
        <mrna_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGGCACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371151" ref_strand="+" ref_description="SGN-E371151 [TUS-28-L17]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1" stop="2351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="47" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48" i_stop="1368" i_length="1321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1369" g_stop="1496" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="199" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1596" g_stop="2051" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="655" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E371151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="47"/>
          <exon e_start="1369" e_stop="1496"/>
          <exon e_start="1596" e_stop="2051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGTAAACCATTTTAAGCAACTTGTTATTCTCCTCTGATGCGTCTGCAAATTCACCGCCTTTAATTATTTAAAAACTCAAAATGATTATCACTCTTGCATTAATACTTTATGGCTGAAAAGGTTATTGTACATATTCAGTGGTTATTACTTTGGATATCACTCAAAATCTTCAGCTCTACCATTACTAGGAATAGGGTTATTTTCCGGGCATCGTTGCGCGTTATTGTTCTTAAAATAATAATTTTAGTACTATCTTAGGAGGAATATTTAGAAGAAAACGCTAAAGAAGATATTGTCCTCTTTCTGATTCTATGATGATACTGTGATGCATGTTCTAACTCTCTAAACAATATCAATCCTTTAAAGAATCTCATTCTGAAAATTTCAGTTGATGAAGAGTTTGTAAGGTATATCTAAAGAAAAAAGAAATAAAGATGCCCTAGAATCTACTGTGGATGCCAGACAATCTGGACAGATGATATTAACAGAATAACCAGACTTACAATGATGACAATACCTTTTATTGATTAGAACCCCCCAGTAAACTTTATTTGACACTACAACATTGGTTGGATGTGTATGAGATCTGGCCTTATCGTTTCTAAGCTATCTCTTGTGCATTTCCTAGGACTAGTTACTTATTTCTCAAGTATTTTCTAATTGTTATTGATGCTGCCCTGATTGATTTACATGAGGTTCTTGTTGTCTAACTTGATGTGGTTGACTTTCTTCTATGAAAGACGATCTCTCCTGCTCTCCCGGGGGATCCAGAGACCTTAATAACTTCAAGGGTTAGTCCAGGAAATATGCTTGATTAGCAACAGGTTATGTGATGAGGTCATTACTGTTTAAATATTCTTCCTACTTTTCATTTCGGGTTTCTGAGATCTTCTCAGCATTTATCAGATTTGTATGCTTTCTGAAAAAAATGTGAGACTCTGTACAACTGTTTTGTGAAATGGTACACTTAACAATGGATACACCAAAAAAAGAGAGAAAACTGACAAGATTGGACTAGGTATGCGCTTTCCCAGGCTTACAAAAAAGAGCAAGACTAGATTAGATCTTTGCTTTCCCAAGTTTGTAGAGACTGATAATATTAGATTGTTATTTCTACCATCAACACTTCCTTTTCCTAATAGTTTAGCTTAGATCAATTGATGATTGATTCTTTTATAGCACTTCCAAATATGAGTCCTCTGTTTGTCAATCTAATCATTTACCCTTGTTCTTCTTCTAACTTGCTTCTCTTAATCGCAATTTCTATTATACCTTCTCCTTTGCTTCTTTATATTAGCCTCCTAATAGAACTTCTAATGCAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGAT</genome_strand>
        <mrna_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370734" ref_strand="+" ref_description="SGN-E370734 [TUS-28-L16]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1" stop="2327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="47" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48" i_stop="1368" i_length="1321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1369" g_stop="1496" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="199" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1596" g_stop="2027" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="631" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E370734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="47"/>
          <exon e_start="1369" e_stop="1496"/>
          <exon e_start="1596" e_stop="2027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGTAAACCATTTTAAGCAACTTGTTATTCTCCTCTGATGCGTCTGCAAATTCACCGCCTTTAATTATTTAAAAACTCAAAATGATTATCACTCTTGCATTAATACTTTATGGCTGAAAAGGTTATTGTACATATTCAGTGGTTATTACTTTGGATATCACTCAAAATCTTCAGCTCTACCATTACTAGGAATAGGGTTATTTTCCGGGCATCGTTGCGCGTTATTGTTCTTAAAATAATAATTTTAGTACTATCTTAGGAGGAATATTTAGAAGAAAACGCTAAAGAAGATATTGTCCTCTTTCTGATTCTATGATGATACTGTGATGCATGTTCTAACTCTCTAAACAATATCAATCCTTTAAAGAATCTCATTCTGAAAATTTCAGTTGATGAAGAGTTTGTAAGGTATATCTAAAGAAAAAAGAAATAAAGATGCCCTAGAATCTACTGTGGATGCCAGACAATCTGGACAGATGATATTAACAGAATAACCAGACTTACAATGATGACAATACCTTTTATTGATTAGAACCCCCCAGTAAACTTTATTTGACACTACAACATTGGTTGGATGTGTATGAGATCTGGCCTTATCGTTTCTAAGCTATCTCTTGTGCATTTCCTAGGACTAGTTACTTATTTCTCAAGTATTTTCTAATTGTTATTGATGCTGCCCTGATTGATTTACATGAGGTTCTTGTTGTCTAACTTGATGTGGTTGACTTTCTTCTATGAAAGACGATCTCTCCTGCTCTCCCGGGGGATCCAGAGACCTTAATAACTTCAAGGGTTAGTCCAGGAAATATGCTTGATTAGCAACAGGTTATGTGATGAGGTCATTACTGTTTAAATATTCTTCCTACTTTTCATTTCGGGTTTCTGAGATCTTCTCAGCATTTATCAGATTTGTATGCTTTCTGAAAAAAATGTGAGACTCTGTACAACTGTTTTGTGAAATGGTACACTTAACAATGGATACACCAAAAAAAGAGAGAAAACTGACAAGATTGGACTAGGTATGCGCTTTCCCAGGCTTACAAAAAAGAGCAAGACTAGATTAGATCTTTGCTTTCCCAAGTTTGTAGAGACTGATAATATTAGATTGTTATTTCTACCATCAACACTTCCTTTTCCTAATAGTTTAGCTTAGATCAATTGATGATTGATTCTTTTATAGCACTTCCAAATATGAGTCCTCTGTTTGTCAATCTAATCATTTACCCTTGTTCTTCTTCTAACTTGCTTCTCTTAATCGCAATTTCTATTATACCTTCTCCTTTGCTTCTTTATATTAGCCTCCTAATAGAACTTCTAATGCAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAA</genome_strand>
        <mrna_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271888" ref_strand="+" ref_description="SGN-E271888 [cLEM-8-F20]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaagcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaaaggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1" stop="2267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="47" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48" i_stop="1368" i_length="1321">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1369" g_stop="1496" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="199" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1596" g_stop="1967" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="571" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E271888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="47"/>
          <exon e_start="1369" e_stop="1496"/>
          <exon e_start="1596" e_stop="1967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGTAAACCATTTTAAGCAACTTGTTATTCTCCTCTGATGCGTCTGCAAATTCACCGCCTTTAATTATTTAAAAACTCAAAATGATTATCACTCTTGCATTAATACTTTATGGCTGAAAAGGTTATTGTACATATTCAGTGGTTATTACTTTGGATATCACTCAAAATCTTCAGCTCTACCATTACTAGGAATAGGGTTATTTTCCGGGCATCGTTGCGCGTTATTGTTCTTAAAATAATAATTTTAGTACTATCTTAGGAGGAATATTTAGAAGAAAACGCTAAAGAAGATATTGTCCTCTTTCTGATTCTATGATGATACTGTGATGCATGTTCTAACTCTCTAAACAATATCAATCCTTTAAAGAATCTCATTCTGAAAATTTCAGTTGATGAAGAGTTTGTAAGGTATATCTAAAGAAAAAAGAAATAAAGATGCCCTAGAATCTACTGTGGATGCCAGACAATCTGGACAGATGATATTAACAGAATAACCAGACTTACAATGATGACAATACCTTTTATTGATTAGAACCCCCCAGTAAACTTTATTTGACACTACAACATTGGTTGGATGTGTATGAGATCTGGCCTTATCGTTTCTAAGCTATCTCTTGTGCATTTCCTAGGACTAGTTACTTATTTCTCAAGTATTTTCTAATTGTTATTGATGCTGCCCTGATTGATTTACATGAGGTTCTTGTTGTCTAACTTGATGTGGTTGACTTTCTTCTATGAAAGACGATCTCTCCTGCTCTCCCGGGGGATCCAGAGACCTTAATAACTTCAAGGGTTAGTCCAGGAAATATGCTTGATTAGCAACAGGTTATGTGATGAGGTCATTACTGTTTAAATATTCTTCCTACTTTTCATTTCGGGTTTCTGAGATCTTCTCAGCATTTATCAGATTTGTATGCTTTCTGAAAAAAATGTGAGACTCTGTACAACTGTTTTGTGAAATGGTACACTTAACAATGGATACACCAAAAAAAGAGAGAAAACTGACAAGATTGGACTAGGTATGCGCTTTCCCAGGCTTACAAAAAAGAGCAAGACTAGATTAGATCTTTGCTTTCCCAAGTTTGTAGAGACTGATAATATTAGATTGTTATTTCTACCATCAACACTTCCTTTTCCTAATAGTTTAGCTTAGATCAATTGATGATTGATTCTTTTATAGCACTTCCAAATATGAGTCCTCTGTTTGTCAATCTAATCATTTACCCTTGTTCTTCTTCTAACTTGCTTCTCTTAATCGCAATTTCTATTATACCTTCTCCTTTGCTTCTTTATATTAGCCTCCTAATAGAACTTCTAATGCAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCT</genome_strand>
        <mrna_strand>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAAGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAAGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705525" ref_strand="+" ref_description="SGN-E705525 [FA27BF02]">
      <seq>gtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1120" stop="2702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1420" g_stop="1496" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1596" g_stop="2402" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="884" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E705525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1420" e_stop="1496"/>
          <exon e_start="1596" e_stop="2402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTA</genome_strand>
        <mrna_strand>GTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371869" ref_strand="+" ref_description="SGN-E371869 [TUS-30-A10](-)">
      <seq>gtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattcttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1278" stop="2664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1476" g_stop="1496" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1596" g_stop="2363" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="788" r_length="767" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E371869" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1476" e_stop="1496"/>
          <exon e_start="1596" e_stop="2363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATA</genome_strand>
        <mrna_strand>GTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTC-TTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709162" ref_strand="+" ref_description="SGN-E709162 [FA42DE06]">
      <seq>cgctggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1362" stop="2751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1660" g_stop="2451" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="805"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E709162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1660" e_stop="2451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</genome_strand>
        <mrna_strand>CGCTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296152" ref_strand="+" ref_description="SGN-E296152 [cLET-24-F10]">
      <seq>tggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagccacaagagtagaagctattactatagttngaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1363" stop="2607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="2307" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E296152" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="2307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAG-CAC-AGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATA</genome_strand>
        <mrna_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCCACAAGAGTAGAAGCTATTACTATAGTTNGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297973" ref_strand="+" ref_description="SGN-E297973 [cLET-38-P23]">
      <seq>tggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1363" stop="2461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="2161" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E297973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="2161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGA</genome_strand>
        <mrna_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271032" ref_strand="+" ref_description="SGN-E271032 [cLEM-22-B24]">
      <seq>ggaggaatcttggtttatcgttccagattgtggatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttatccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1483" stop="2774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1783" g_stop="2474" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E271032" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1783" e_stop="2474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATA</genome_strand>
        <mrna_strand>GGAGGAATCTTGGTTTATCGTTCCAGATTGTGGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTATCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370733" ref_strand="+" ref_description="SGN-E370733 [TUS-28-L16](-)">
      <seq>tattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1522" stop="2817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1822" g_stop="2516" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="708"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E370733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1822" e_stop="2516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>TATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371150" ref_strand="+" ref_description="SGN-E371150 [TUS-28-L17](-)">
      <seq>aatcagccgcacaactggaaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1537" stop="2817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1837" g_stop="2516" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="693"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E371150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1837" e_stop="2516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>AATCAGCCGCACAACTGGAAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277429" ref_strand="+" ref_description="SGN-E277429 [cLER-3-J1]">
      <seq>aaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1628" stop="2752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1928" g_stop="2451" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="538"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E277429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1928" e_stop="2451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</genome_strand>
        <mrna_strand>AAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314651" ref_strand="-" ref_description="SGN-E314651 [cTOA-20-D2]">
      <seq>aaagctgatttagcaatgcagaacctaaaatgccttccatctagtcctttcnaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="1743" stop="2817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2043" g_stop="2516" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="492"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E314651" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314651" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2043" e_stop="2516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>AAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTCNAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539578" ref_strand="+" ref_description="SGN-E539578 [TUS-59-G15](-)">
      <seq>caaaaatttcaactatttttagttgataactccaaatttcaattctgagtgaaggaggcaaggacagtcattatcaccaccatggccaccantatgaccaccccccacccccccctatggcaccaccattcccccccagagaagacccaaccaccccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaatcaggattcgttgcatgcaccattgctgctgttctcgctgtaattggtaatatcgtatttgggttgacatggatattattaacagcataatggtgatcaacttctgtggagtattcgtgttctagctagtttgcttgattaatgcacattttattcagaacatttctgtaaaacaaaagttacatgttataattaaataaataattatatgtgcttcctgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="28780" stop="24538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28480" g_stop="28169" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28168" i_stop="27400" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27399" g_stop="27334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="380" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27333" i_stop="25974" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25973" g_stop="25901" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="453" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25900" i_stop="25432" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25431" g_stop="25314" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="571" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25313" i_stop="25047" i_length="267">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25046" g_stop="24836" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="782" r_length="211" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E539578" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28480" e_stop="28169"/>
          <exon e_start="27399" e_stop="27334"/>
          <exon e_start="25973" e_stop="25901"/>
          <exon e_start="25431" e_stop="25314"/>
          <exon e_start="25046" e_stop="24836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCA-CCACCA-CCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCA-CCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCTGTAAGTGATCTCTTTCGTTCTTTTTGTGTGATGTTCTCAACTGCATGAGAACGAAAAACTAAGTGTGTTTTCACATTTGATTCGAGATTGACATAAGAATTTTGTTAATGAAATGGCACTCAACTAGTATAGCGCGATAGACATATCATTAATGACCTGTCACGTCTAATATGATGAACTATTTCTAGATGTAACGCGATATACAACTCTTATTGTGTATGTTCTTCGTAGCTTAATGGCTCCGTCAAACTCTGTTGCATGTTGCAGGCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</genome_strand>
        <mrna_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTCTGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCANTATGACCACCCCCCACCCCCCCCTATGG-CACCACCATTCCCCCCCAGAGAAGACCCAACCACCCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT...........................................................................................................................................................................................................................................................................GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548244" ref_strand="+" ref_description="SGN-E548244 [TUS-59-G15]">
      <seq>caaaaatttcaactatttttagttgataactccaaatttcaattatgagtgaaggaggcaaggacagtcattatcaccaccatggccaccactatgaccaccaccaccaccactatggacaccaccatcaccaccaagagaagacccaaccacccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaatcaggattcgttgcatgcaccattgctgctgttctcgctgtaattggtaatatcgtatttgggttgacatggatattattaacagcataatggtgatcaacttctgtggagtattcgtgttctagctagtttgcttgattaatgcacattttattcagaacatttctgtaaaacaaaagtacatgttataattaaataaataattatatgtgcttcctgtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="28780" stop="24538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28480" g_stop="28169" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28168" i_stop="27400" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27399" g_stop="27334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="378" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27333" i_stop="25974" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25973" g_stop="25901" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="451" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25900" i_stop="25432" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25431" g_stop="25314" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="569" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25313" i_stop="25047" i_length="267">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25046" g_stop="24837" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="778" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E548244" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28480" e_stop="28169"/>
          <exon e_start="27399" e_stop="27334"/>
          <exon e_start="25973" e_stop="25901"/>
          <exon e_start="25431" e_stop="25314"/>
          <exon e_start="25046" e_stop="24837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCTGTAAGTGATCTCTTTCGTTCTTTTTGTGTGATGTTCTCAACTGCATGAGAACGAAAAACTAAGTGTGTTTTCACATTTGATTCGAGATTGACATAAGAATTTTGTTAATGAAATGGCACTCAACTAGTATAGCGCGATAGACATATCATTAATGACCTGTCACGTCTAATATGATGAACTATTTCTAGATGTAACGCGATATACAACTCTTATTGTGTATGTTCTTCGTAGCTTAATGGCTCCGTCAAACTCTGTTGCATGTTGCAGGCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAAT</genome_strand>
        <mrna_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT...........................................................................................................................................................................................................................................................................GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAG-TACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285129" ref_strand="+" ref_description="SGN-E285129 [cLER-20-A20]">
      <seq>aaaaatttcaactatttttagttgataactccaaatttcaattatgagtgaaggaggcaaggacagtcattatcaccaccatggccaccactatgaccaccaccaccaccactatggacaccaccatcaccaccaagagaagacccaaccacccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="28779" stop="25040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28479" g_stop="28169" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28168" i_stop="27400" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27399" g_stop="27334" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="377" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27333" i_stop="25974" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25973" g_stop="25901" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="450" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25900" i_stop="25432" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25431" g_stop="25340" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="542" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E285129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28479" e_stop="28169"/>
          <exon e_start="27399" e_stop="27334"/>
          <exon e_start="25973" e_stop="25901"/>
          <exon e_start="25431" e_stop="25340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAAT</genome_strand>
        <mrna_strand>AAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746970" ref_strand="+" ref_description="SGN-E746970 [GI|47104312]">
      <seq>atggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttctttcatggtcactacgaatgtaaatgggaagcaaggtatacacgatttgaagcgaaagttaacaaaataatgtttagctggagaagttgaataagatattgttccaagaagctatgtagttttaactgataagaatcttgaatatatgtatgtaacttgatttctgagatgggaataatgaaaagtgaaatttatcagttgctgcattttctgaattatagtagcaattcagatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="34916" stop="17278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34616" g_stop="34421" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32879" g_stop="32751" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="325" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32624" g_stop="32517" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="433" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32516" i_stop="31388" i_length="1129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31387" g_stop="31253" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="568" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30584" g_stop="30543" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="610" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30430" g_stop="30371" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="670" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30288" g_stop="30235" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="724" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29927" g_stop="29903" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="749" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29822" g_stop="29486" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="1086" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="29485" i_stop="29431" i_length="55">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="29430" g_stop="29415" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1102" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E746970" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1102</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34616" e_stop="34421"/>
          <exon e_start="32879" e_stop="32751"/>
          <exon e_start="32624" e_stop="32517"/>
          <exon e_start="31387" e_stop="31253"/>
          <exon e_start="30584" e_stop="30543"/>
          <exon e_start="30430" e_stop="30371"/>
          <exon e_start="30288" e_stop="30235"/>
          <exon e_start="29927" e_stop="29903"/>
          <exon e_start="29822" e_stop="29486"/>
          <exon e_start="29430" e_stop="29415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTAATTTGTTTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCCAAGTTTATGCCTGAGTGTTATACTGTGTAGAACAGTGCAACGAGATTTTGTTCATATAAAAAAGAAGAAAAAT</genome_strand>
        <mrna_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCAAA.......................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310839" ref_strand="-" ref_description="SGN-E310839 [cLEZ-15-G12]">
      <seq>gtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttctttcatggtcactacgaatgtaaatgggaagcaaggtatacacgatttgaagcgaaagttaacaaaataatgtttagctggagaagttgaataagatattgttccaagaagctatgtagttttaactgataagaatcttgaatatatgtatgtaacttgatttctgagatgggaataatgaaaagtgaaatttatcagttgctgcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="30864" stop="29212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30564" g_stop="30543" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30430" g_stop="30371" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30288" g_stop="30235" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="136" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29927" g_stop="29903" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="161" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29822" g_stop="29512" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="472" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E310839" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30564" e_stop="30543"/>
          <exon e_start="30430" e_stop="30371"/>
          <exon e_start="30288" e_stop="30235"/>
          <exon e_start="29927" e_stop="29903"/>
          <exon e_start="29822" e_stop="29512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</genome_strand>
        <mrna_strand>GTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309779" ref_strand="+" ref_description="SGN-E309779 [cLEY-26-N18]">
      <seq>ataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="33101" stop="29424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32801" g_stop="32751" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32624" g_stop="32517" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="159" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32516" i_stop="31388" i_length="1129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31387" g_stop="31253" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="294" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30584" g_stop="30543" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="336" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30430" g_stop="30371" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="396" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30288" g_stop="30235" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="450" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29927" g_stop="29903" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="475" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29822" g_stop="29724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="574" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E309779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32801" e_stop="32751"/>
          <exon e_start="32624" e_stop="32517"/>
          <exon e_start="31387" e_stop="31253"/>
          <exon e_start="30584" e_stop="30543"/>
          <exon e_start="30430" e_stop="30371"/>
          <exon e_start="30288" e_stop="30235"/>
          <exon e_start="29927" e_stop="29903"/>
          <exon e_start="29822" e_stop="29724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTAATTTGTTTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTC</genome_strand>
        <mrna_strand>ATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541786" ref_strand="+" ref_description="SGN-E541786 [TUS-62-M3]">
      <seq>atggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacatttcaaaacatcatgcagaatttgaanttgtcatatccaaaaatgatggacgtcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="34916" stop="29484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34616" g_stop="34421" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32879" g_stop="32751" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="325" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32624" g_stop="32517" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="433" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32516" i_stop="31388" i_length="1129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31387" g_stop="31253" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="568" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30584" g_stop="30543" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="610" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30430" g_stop="30371" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="670" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30288" g_stop="30235" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="724" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29927" g_stop="29903" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="749" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29822" g_stop="29784" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="788" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E541786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34616" e_stop="34421"/>
          <exon e_start="32879" e_stop="32751"/>
          <exon e_start="32624" e_stop="32517"/>
          <exon e_start="31387" e_stop="31253"/>
          <exon e_start="30584" e_stop="30543"/>
          <exon e_start="30430" e_stop="30371"/>
          <exon e_start="30288" e_stop="30235"/>
          <exon e_start="29927" e_stop="29903"/>
          <exon e_start="29822" e_stop="29784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTAATTTGTTTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAG</genome_strand>
        <mrna_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTTCAAAACATCATGCAGA................................................................................ATTTGAANTTGTCATATCCAAAAATGATGGACGTCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283341" ref_strand="+" ref_description="SGN-E283341 [cLER-12-C17]">
      <seq>gaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="34909" stop="30086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34609" g_stop="34421" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32879" g_stop="32751" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="318" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32750" i_stop="31388" i_length="1363">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31387" g_stop="31253" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30584" g_stop="30543" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="495" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30430" g_stop="30386" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="540" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E283341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34609" e_stop="34421"/>
          <exon e_start="32879" e_stop="32751"/>
          <exon e_start="31387" e_stop="31253"/>
          <exon e_start="30584" e_stop="30543"/>
          <exon e_start="30430" e_stop="30386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTAATTTGTTTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</genome_strand>
        <mrna_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299754" ref_strand="+" ref_description="SGN-E299754 [cLEW-1-L6]">
      <seq>tggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="34915" stop="30960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34615" g_stop="34421" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32879" g_stop="32751" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="324" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32624" g_stop="32517" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="432" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32516" i_stop="31388" i_length="1129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31387" g_stop="31260" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="560" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E299754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34615" e_stop="34421"/>
          <exon e_start="32879" e_stop="32751"/>
          <exon e_start="32624" e_stop="32517"/>
          <exon e_start="31387" e_stop="31260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTAATTTGTTTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGA</genome_strand>
        <mrna_strand>TGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723089" ref_strand="+" ref_description="SGN-E723089 [FC19BD07]">
      <seq>aaaaccatcgccagttggaaagttactttccattgacgtcactcttcttgtagaatacgggaactttttatagagataatcgacagtaaagataagatcatgctgagattccgatggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgtattctacaacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttcttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggtttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgccaaagctgatatttttgttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="35029" stop="32255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34729" g_stop="34421" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32879" g_stop="32751" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="438" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32624" g_stop="32555" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="508" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E723089" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34729" e_stop="34421"/>
          <exon e_start="32879" e_stop="32751"/>
          <exon e_start="32624" e_stop="32555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAAAATACGGGAACATTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAAC</genome_strand>
        <mrna_strand>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAGAATACGGGAACTTTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGTATTCTACAACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTCTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGTTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCCAAAGCTGATATTTTTGTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298018" ref_strand="+" ref_description="SGN-E298018 [cLEW-12-E11]">
      <seq>ccgcaaccagaaaactggtttggagctggggctaaggagcccattgcttttgtgattttagaagttcttgaagcagctgacatgaagccatcagatttaaatggattggctgatccatatgttaaggggcacattggcctttacagattcaggactaagactaagaagaagacattgaatccacagtggcgtgaggagttcaagattccagtctgtacatgggagtctcctaacaacatgctcaatgtcgaagttcgtgacaaagaccatttatatgatgatacattgggaaaatgttccatcaatatctgtgattttagggatggccagaggcatgatatgtggctgtctcttcagaacatcaaaattgggagattgcatcttgccataactgttgttgattgtgccaaaaagggcgcggagcagtcatatgatagcggaagtatggtcaatgaacaggatagcaaatttgctgaagtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="41154" stop="42780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41457" g_stop="41549" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="103" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41550" i_stop="41627" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41628" g_stop="41814" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="290" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41815" i_stop="41984" i_length="170">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41985" g_stop="42108" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="414" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42109" i_stop="42338" i_length="230">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42339" g_stop="42480" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="556" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E298018" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41457" e_stop="41549"/>
          <exon e_start="41628" e_stop="41814"/>
          <exon e_start="41985" e_stop="42108"/>
          <exon e_start="42339" e_stop="42480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATGGTACCTAGAAAATAATCTTACTGTACTTCTGTCAAATTATTAGCTATGTATGGCTAAAAGCTGGGTGGTCATTTTCAGGATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGGGTTCGTCCTGTTCTCTTGGCAATTTAAATACTAATATTCTTCTCTATAGGTGTATGAGTTAACTATAGTTTCTTCTTCTTTTCTTTCGACATCAGTATGTTCTCCAATGGAATATTATTCGAAGCCGACATAAGCAACTTATTCACTTCTTATTTGTTCTTTGTGAACAGAAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAGGTATATGTTTTTCCTGTGAAATTTGTCATGAACACTAAATTGAAATGTTAAGAAGCAAAGATTTCTCACTTATTATCTTCTTTTGCACCTGAAAAATGGTTTCCATTACTCATAATTTTATAATGGATGAATTCAGTAAACAAAAATAACGGTGCTGAGGAATGAGTATAGTTTATTATGATAAATAATGACGGAAAATAAGGAAGTACTAAGTTTTCAGCAATTTTCAGGGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTA</genome_strand>
        <mrna_strand>AAAACTGGTTTGGAGCTGGGGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG..............................................................................GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG..........................................................................................................................................................................AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG......................................................................................................................................................................................................................................GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATTTGCTGAAGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244501" ref_strand="+" ref_description="SGN-E244501 [cLED-38-E21]">
      <seq>aaaaagggcgcggagcagtcatatgatagcggaagtatggtcaatgaacaggatagcaaatctgctgaggtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42037" stop="43201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42103" g_stop="42108" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42109" i_stop="42338" i_length="230">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.530" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42339" g_stop="42901" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="569" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E244501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42103" e_stop="42108"/>
          <exon e_start="42339" e_stop="42901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTATATGTTTTTCCTGTGAAATTTGTCATGAACACTAAATTGAAATGTTAAGAAGCAAAGATTTCTCACTTATTATCTTCTTTTGCACCTGAAAAATGGTTTCCATTACTCATAATTTTATAATGGATGAATTCAGTAAACAAAAATAACGGTGCTGAGGAATGAGTATAGTTTATTATGATAAATAATGACGGAAAATAAGGAAGTACTAAGTTTTCAGCAATTTTCAGGGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTAC</genome_strand>
        <mrna_strand>AAAAAG......................................................................................................................................................................................................................................GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236632" ref_strand="+" ref_description="SGN-E236632 [cLED-13-F20]">
      <seq>aatgaacaggatagcaaatctgctgaggtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42075" stop="43103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42375" g_stop="42803" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E236632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42375" e_stop="42803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTA</genome_strand>
        <mrna_strand>AATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228346" ref_strand="+" ref_description="SGN-E228346 [cLED-3-M7]">
      <seq>tgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagtgagaaacaagacgaagaaaatccttaaaaacgctggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42146" stop="43299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42446" g_stop="42999" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E228346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42446" e_stop="42999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</genome_strand>
        <mrna_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232033" ref_strand="+" ref_description="SGN-E232033 [cLED-7-M20]">
      <seq>tgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagtgagaaacaagacgaagaaaatccttaaaaacgctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42146" stop="43297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42446" g_stop="42997" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E232033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42446" e_stop="42997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAA</genome_strand>
        <mrna_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231368" ref_strand="+" ref_description="SGN-E231368 [cLED-10-F7]">
      <seq>accttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttatggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42149" stop="43258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42449" g_stop="42958" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E231368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42449" e_stop="42958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</genome_strand>
        <mrna_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTATGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233522" ref_strand="+" ref_description="SGN-E233522 [cLED-9-E2]">
      <seq>accttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagatttttcaggtcgttttcacaggggtttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42149" stop="43032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42449" g_stop="42732" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E233522" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42449" e_stop="42732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATA</genome_strand>
        <mrna_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTTTTCAGGTCGTTTTCACAGGGGTTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304369" ref_strand="+" ref_description="SGN-E304369 [cLEX-12-H22]">
      <seq>ttgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcaggtaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcacgaaatgggaaaaaccccacaaaggggagagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="42187" stop="43260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42487" g_stop="42960" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E304369" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42487" e_stop="42960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGA</genome_strand>
        <mrna_strand>TTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGGTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCACGAAATGGGAAAAACCCCACAAAGGGGAGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287253" ref_strand="+" ref_description="SGN-E287253 [cLES-15-G21]">
      <seq>tggccctcctttgagtttagctcctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgcgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggagtttgtattgctacatctggnccgggagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43499" stop="44609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43799" g_stop="44309" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E287253" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43799" e_stop="44309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCTCCTTTGAGTTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTA</genome_strand>
        <mrna_strand>TGGCCCTCCTTTGAGTTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGCGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGAGTTTGTATTGCTACATCTGGNCCGGGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306126" ref_strand="+" ref_description="SGN-E306126 [cLEY-13-F22]">
      <seq>tttagctcctcaacaacaatggcggctgcatctccatctgcttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagaaggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttaccggtcttgctgatgctttgttggatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43514" stop="44652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43814" g_stop="44352" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E306126" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43814" e_stop="44352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTAT</genome_strand>
        <mrna_strand>TTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTGCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAAGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTACCGGTCTTGCTGATGCTTTGTTGGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709390" ref_strand="+" ref_description="SGN-E709390 [FA51DA09]">
      <seq>cgtctctcaacaacaatggcggactgcatctccatcatccttgtttttccaaaaccctacctccatcttcatcaaaatcttccaccccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcccccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaacgggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcacagggctacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctaccaaatcttgttaccggcccttgctgatgctttgttggatagtatcccgattgctgctattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43518" stop="44671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43817" g_stop="44371" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E709390" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43817" e_stop="44371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCTCAACAACAATGGCGG-CTGCATCTCCATC-TCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCA-CCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTA-CGAATCTTGTTAGCGG-TCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACC</genome_strand>
        <mrna_strand>CGTCTCTCAACAACAATGGCGGACTGCATCTCCATCATCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCCCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAACGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCACAGGGCTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACCAAATCTTGTTACCGGCCCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGCTGCTATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739587" ref_strand="+" ref_description="SGN-E739587 [LC18AB09]">
      <seq>ctctcaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccccaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43527" stop="44929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43822" g_stop="44629" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E739587" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43822" e_stop="44629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGG</genome_strand>
        <mrna_strand>CTC-TCAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCCAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347444" ref_strand="+" ref_description="SGN-E347444 [cTOF-33-B17]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43522" stop="44783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43822" g_stop="44483" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E347444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43822" e_stop="44483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATA</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206903" ref_strand="+" ref_description="SGN-E206903 [cLEC-33-L8]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcgggcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43522" stop="44712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43822" g_stop="44412" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E206903" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43822" e_stop="44412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCA</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGGCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330184" ref_strand="+" ref_description="SGN-E330184 [cTOD-4-A13]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgggggtccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaagctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43522" stop="44638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43822" g_stop="44338" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E330184" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43822" e_stop="44338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCT</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGGGGGTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAAGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212731" ref_strand="+" ref_description="SGN-E212731 [cLEC-73-N15]">
      <seq>aacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattggtgaggtaacgagatccattacgnaagcatattatcttgttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43525" stop="44771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43825" g_stop="44471" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E212731" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43825" e_stop="44471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACG-AAGCATAATTATCTTGTTATGG</genome_strand>
        <mrna_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGGTGAGGTAACGAGATCCATTACGNAAGCAT-ATTATCTTGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201852" ref_strand="+" ref_description="SGN-E201852 [cLEC-18-E17]">
      <seq>aacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43525" stop="44710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43825" g_stop="44410" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E201852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43825" e_stop="44410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTT</genome_strand>
        <mrna_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329678" ref_strand="+" ref_description="SGN-E329678 [cTOD-3-N19]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43528" stop="44670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43828" g_stop="44370" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E329678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43828" e_stop="44370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTAC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244831" ref_strand="+" ref_description="SGN-E244831 [cLEF-2-A20]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaagatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43528" stop="44615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43828" g_stop="44315" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E244831" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43828" e_stop="44315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAAGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244832" ref_strand="+" ref_description="SGN-E244832 [cLEF-2-A22]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaagaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43528" stop="44380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43828" g_stop="44080" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E244832" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43828" e_stop="44080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAGAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731935" ref_strand="+" ref_description="SGN-E731935 [LA28CE01]">
      <seq>aatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccccaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaagttgcctaaattacctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43531" stop="44948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43831" g_stop="44648" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E731935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43831" e_stop="44648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATG</genome_strand>
        <mrna_strand>AATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCCAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAAGTTGCCTAAATTACCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270338" ref_strand="+" ref_description="SGN-E270338 [cLEM-1-I15]">
      <seq>ggggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43534" stop="44526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43832" g_stop="44226" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E270338" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43832" e_stop="44226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</genome_strand>
        <mrna_strand>GGGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370567" ref_strand="+" ref_description="SGN-E370567 [TUS-27-G14]">
      <seq>gcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43535" stop="44803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43835" g_stop="44503" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E370567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43835" e_stop="44503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAA</genome_strand>
        <mrna_strand>GCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205764" ref_strand="+" ref_description="SGN-E205764 [cLEC-21-L2]">
      <seq>ggctgcatctacatctccttgtttttccaaaaccctacctccatcttcatcaaaatctggcacccttcttcccaaatctacctggactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctgtgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43537" stop="44706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43837" g_stop="44406" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E205764" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43837" e_stop="44406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGC</genome_strand>
        <mrna_strand>GGCTGCATCTACATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTGGCACCCTTCTTCCCAAATCTACCTGGACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTGTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307068" ref_strand="+" ref_description="SGN-E307068 [cLEY-15-I14]">
      <seq>ttgtttttctaaaaccctacctccatcggcatcaaaatggtccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43555" stop="44705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43855" g_stop="44405" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E307068" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43855" e_stop="44405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATG</genome_strand>
        <mrna_strand>TTGTTTTTCTAAAACCCTACCTCCATCGGCATCAAAATGGTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737097" ref_strand="+" ref_description="SGN-E737097 [LC08BH08]">
      <seq>caaaaccctacctccatcttcctccaaatcttccaccattctacctagatctaccttctctttccacaatcacccacaaaaagcctcaccccttcatctcatccacgctcaacataatcgtcgtggttttgccgttgccaatgtcgtcatatccactaccacccataacgacgtttctgaacctgaaacattcgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggtgttacggatgtatttgcatacccaggaggtgcttctatggagattcatcaagctttgacacgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaagttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43564" stop="44960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43864" g_stop="44660" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E737097" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43864" e_stop="44660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAG-C--CGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGG</genome_strand>
        <mrna_strand>CAAAACCCTACCTCCATCTTCCTCCAAATCTTCCACCATTCTACCTAGATCTACCTTCTCTTTCCACAATCACCCACAAAAAGCCTCACCCCTTCATCTCATCCACGCTCAACATAATCGTCGTGGTTTTGCCGTTGCCAATGTCGTCATATCCACTACCACCCATAACGACGTTTCTGAACCTGAAACATTCGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGTGTTACGGATGTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAAGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300293" ref_strand="+" ref_description="SGN-E300293 [cLEW-17-O17]">
      <seq>aaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43588" stop="44709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43888" g_stop="44409" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E300293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43888" e_stop="44409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTT</genome_strand>
        <mrna_strand>AAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245965" ref_strand="+" ref_description="SGN-E245965 [cLEF-51-I12]">
      <seq>ctacctttactttccacaatcaccctaaaaaagcatcagcccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaagctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43614" stop="44526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43914" g_stop="44226" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E245965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43914" e_stop="44226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</genome_strand>
        <mrna_strand>CTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCAGCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAAGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332190" ref_strand="+" ref_description="SGN-E332190 [cTOD-16-J14]">
      <seq>tcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgccctggtacatgtctaggttgcctaaattacctaatgagatgcttttggaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43633" stop="44968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43933" g_stop="44667" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E332190" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43933" e_stop="44667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAAT</genome_strand>
        <mrna_strand>TCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCCTGGTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348604" ref_strand="+" ref_description="SGN-E348604 [cTOF-30-A24]">
      <seq>ttgaaagggaaggtgttacggatgtatttgcatacccaggaggtgcttctatggagattcatcaagctttgacacgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtgggtggtggggttgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccactggngatgagctttcacttcaatgttgggtatgcatggaactgtgtatgctaattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43812" stop="45171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44112" g_stop="44872" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E348604" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44112" e_stop="44872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGT-GGG-TGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCG</genome_strand>
        <mrna_strand>TTGAAAGGGAAGGTGTTACGGATGTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGGTTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCC-ACTGGNGATGAGCTTTCACTTC-AATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333862" ref_strand="+" ref_description="SGN-E333862 [cTOD-24-K17]">
      <seq>gtatttgcatacccaggaggtgcttctatggagattcatcaagctttgacacgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtggggtggtgggtgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccaactggggatgagctttcacttcaaatgttgggtatgcatggaactgtgtatgctaattatgctgtggatagtagtgatttgttgcttgcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43835" stop="45205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44135" g_stop="44905" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E333862" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44135" e_stop="44905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGT-GGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGG</genome_strand>
        <mrna_strand>GTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAACTGGGGATGAGCTTTCACTTCAAATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCTGTGGATAGTAGTGATTTGTTGCTTGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261832" ref_strand="+" ref_description="SGN-E261832 [cLEG-61-M14]">
      <seq>ttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttgcctaaattacctaatgagatgcttttggaacaaattgttaggctgatttcagagtcaaagaagcctgttttgtatgtgggtgggtgggtgttcacagtcgagtgaggagctgagacgctttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43858" stop="45171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44158" g_stop="44871" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E261832" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44158" e_stop="44871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGT-GGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGC</genome_strand>
        <mrna_strand>TTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698545" ref_strand="+" ref_description="SGN-E698545 [FA06CH07]">
      <seq>ccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaaccataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaactcacgacggtctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttgcctaaattacctaatgacatgcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43860" stop="44960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44160" g_stop="44660" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E698545" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44160" e_stop="44660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGG</genome_strand>
        <mrna_strand>CCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAACCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAACTCACGACGGTCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGACATGCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333758" ref_strand="+" ref_description="SGN-E333758 [cTOD-22-O18]">
      <seq>acgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtgggtggtgggtgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccaactggggatgagctttcacttcaaatgttgggtatgcatggaactgtgtatgctaattatgctgtggatagtagtgatttgttgcttgcatttggggtgaggtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43885" stop="45218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44918" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E333758" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATG</genome_strand>
        <mrna_strand>ACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAACTGGGGATGAGCTTTCACTTCAAATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCTGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325382" ref_strand="+" ref_description="SGN-E325382 [cTOC-1-K5]">
      <seq>acgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaaacctgttttgtatgtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="43885" stop="45014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44714" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E325382" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTG</genome_strand>
        <mrna_strand>ACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAACCTGTTTTGTATGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708942" ref_strand="+" ref_description="SGN-E708942 [FA42AG10]">
      <seq>cgcttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtgggtggtgggtgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccaactggggatgagctttcacttcaaatgttgggtatgcatggaactgtgtatgctaattatgctgtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagtcgagcgaaaattgtccacattgatattgattcggcagagattggaaaaaacaagcaacctcatgtttccatttgtgcagatatcaagttggcattacagggtttgaattccatattggagggtaaagaaggtaagatgaagttggatttttctgcctggaggcangagttaacggagcagaagatgaagtacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44042" stop="45447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44339" g_stop="45149" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="811" r_length="811" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E708942" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44339" e_stop="45149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCAT</genome_strand>
        <mrna_strand>CGCTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAACTGGGGATGAGCTTTCACTTCAAATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCTGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGTCGAGCGAAAATTGTCCACATTGATATTGATTCGGCAGAGATTGGAAAAAACAAGCAACCTCATGTTTCCATTTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTGGAGGGTAAAGAAGGTAAGATGAAGTTGGATTTTTCTGCCTGGAGGCANGAGTTAACGGAGCAGAAGATGAAGTACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701881" ref_strand="+" ref_description="SGN-E701881 [FA17AG11]">
      <seq>cccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttgcctaaattacctaatgagatgcttttggaacaaattgttaggctgatttcagagtcaaagaagcctgttttgtatgtgggtggtgggtgttcacagtcgagtgaggagctgagacgctttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcaaaaagtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44053" stop="45533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44353" g_stop="45233" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E701881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44353" e_stop="45233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCA</genome_strand>
        <mrna_strand>CCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAAAAAGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206386" ref_strand="+" ref_description="SGN-E206386 [cLEC-23-D12]">
      <seq>ggagctgagacgctttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaagttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44437" stop="45566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44737" g_stop="45266" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E206386" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44737" e_stop="45266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGG</genome_strand>
        <mrna_strand>GGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378684" ref_strand="+" ref_description="SGN-E378684 [TUS-25-F1]">
      <seq>tttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44450" stop="45931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44750" g_stop="45631" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E378684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44750" e_stop="45631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCA</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249067" ref_strand="+" ref_description="SGN-E249067 [cLEF-49-B9]">
      <seq>tttgtggagcttacaggtattcctgtggcgagtactgtgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaagtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaagttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44450" stop="45638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44750" g_stop="45338" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E249067" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44750" e_stop="45338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTG</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACAGGTATTCCTGTGGCGAGTACTGTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAAGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368935" ref_strand="+" ref_description="SGN-E368935 [TUS-25-F1]">
      <seq>tttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggcttgcccaacactatcaagtacaaaaaagccacgccctatgggcttacatcttgtggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44450" stop="45599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44750" g_stop="45322" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E368935" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44750" e_stop="45322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGC-TGCCCAACACTA-CAAGTAC-AAAAAGCCACG-CCAAT-GGCTTACATCTGGTGGATTA</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTTGCCCAACACTATCAAGTACAAAAAAGCCACGCCCTATGGGCTTACATCTTGTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276482" ref_strand="+" ref_description="SGN-E276482 [cLEN-17-N12]">
      <seq>gtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44466" stop="45593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44766" g_stop="45293" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E276482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44766" e_stop="45293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGC</genome_strand>
        <mrna_strand>GTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247946" ref_strand="+" ref_description="SGN-E247946 [cLEF-47-J2]">
      <seq>tcttcaaatgttgggtatgcatgggactgtgtatgctaagtatgcggtggggagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44527" stop="45598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44827" g_stop="45298" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E247946" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44827" e_stop="45298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGC</genome_strand>
        <mrna_strand>TCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAAGTATGCGGTGGGGAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726647" ref_strand="+" ref_description="SGN-E726647 [LA12BG03]">
      <seq>gtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagtcgagcgaaaattgtccacattgatattgattcggcagagattggaaaaaacaagcaacctcatgtttccatttgtgcagatatcaagttggcattacagggtttgaattccatattggagggtagagaaggtaagatgaaggtggatttttctgcctggaggcaggagttaacggagcacaagatgaagtacccactgaattttaagacttttggtgatgccatccctccacaatatgctattcagggtcttgatgagttaactaacggaaatgccattattaatactggtgtggggcaacaccagatgtgggctgcccaatactataagtacaaaaagccacgccaatggttgacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttgggagaccgggtgagattgtggttgacattgacggtgatgggagttttatcatgaatgtgcaagagttagcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcaatgggaggatcgattctataaagctaacagagcacacacttacttgggtgacccttctaacgaggaagagatcttccctaatatgttgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44583" stop="46007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44883" g_stop="45707" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E726647" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44883" e_stop="45707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATG</genome_strand>
        <mrna_strand>GTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGTCGAGCGAAAATTGTCCACATTGATATTGATTCGGCAGAGATTGGAAAAAACAAGCAACCTCATGTTTCCATTTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTGGAGGGTAGAGAAGGTAAGATGAAGGTGGATTTTTCTGCCTGGAGGCAGGAGTTAACGGAGCACAAGATGAAGTACCCACTGAATTTTAAGACTTTTGGTGATGCCATCCCTCCACAATATGCTATTCAGGGTCTTGATGAGTTAACTAACGGAAATGCCATTATTAATACTGGTGTGGGGCAACACCAGATGTGGGCTGCCCAATACTATAAGTACAAAAAGCCACGCCAATGGTTGACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGGAGACCGGGTGAGATTGTGGTTGACATTGACGGTGATGGGAGTTTTATCATGAATGTGCAAGAGTTAGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAATGGGAGGATCGATTCTATAAAGCTAACAGAGCACACACTTACTTGGGTGACCCTTCTAACGAGGAAGAGATCTTCCCTAATATGTTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212805" ref_strand="+" ref_description="SGN-E212805 [cLEC-73-I17]">
      <seq>gatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44585" stop="45927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44885" g_stop="45627" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E212805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44885" e_stop="45627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGC</genome_strand>
        <mrna_strand>GATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277538" ref_strand="+" ref_description="SGN-E277538 [cLER-6-C17]">
      <seq>tttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44612" stop="45727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44912" g_stop="45427" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E277538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44912" e_stop="45427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTG</genome_strand>
        <mrna_strand>TTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728375" ref_strand="+" ref_description="SGN-E728375 [LA17CE04]">
      <seq>gccttcattgatattgattcggcagagattggaaaaaacaagcaacctcatgtttccatttgtgcagatatcaagttggcattacagggtttgaattccatattggagggtaaagaaggtaagatgaagttggatttttctgcctggaggcaggagttaacggagcagaagatgaagtacccactgaattttaagacttttggtgatgccatccctccacaatatgctattcaggttcttgatgagttaactaacggaaatgccattattagtactggtgtggggcaacaccagatgtgggctgcccaatactataagtacaaaaagccacgccaatggttgacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttgggagaccgggtgagattgtggttgacattgacggtgatgggagttttatcatgaatgtgcaagagttagcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcaatgggaggatcgattctataaagctaacagagcacacacttacttgggtgacccttcntacgaggaagagatcttncctaatatgttgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44668" stop="45952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44966" g_stop="45652" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E728375" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44966" e_stop="45652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGAT</genome_strand>
        <mrna_strand>GCCTTCATTGATATTGATTCGGCAGAGATTGGAAAAAACAAGCAACCTCATGTTTCCATTTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTGGAGGGTAAAGAAGGTAAGATGAAGTTGGATTTTTCTGCCTGGAGGCAGGAGTTAACGGAGCAGAAGATGAAGTACCCACTGAATTTTAAGACTTTTGGTGATGCCATCCCTCCACAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATTATTAGTACTGGTGTGGGGCAACACCAGATGTGGGCTGCCCAATACTATAAGTACAAAAAGCCACGCCAATGGTTGACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGGAGACCGGGTGAGATTGTGGTTGACATTGACGGTGATGGGAGTTTTATCATGAATGTGCAAGAGTTAGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAATGGGAGGATCGATTCTATAAAGCTAACAGAGCACACACTTACTTGGGTGACCCTTCNTACGAGGAAGAGATCTTNCCTAATATGTTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276467" ref_strand="+" ref_description="SGN-E276467 [cLEN-17-F16]">
      <seq>attgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44672" stop="45762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44972" g_stop="45462" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E276467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44972" e_stop="45462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCC</genome_strand>
        <mrna_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276569" ref_strand="+" ref_description="SGN-E276569 [cLEN-17-F15]">
      <seq>attgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44672" stop="45736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44972" g_stop="45436" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E276569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44972" e_stop="45436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTG</genome_strand>
        <mrna_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253008" ref_strand="+" ref_description="SGN-E253008 [cLEG-25-F10]">
      <seq>aaagaacaagcaacctcatgttttcatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44698" stop="45930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44998" g_stop="45630" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E253008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44998" e_stop="45630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGC</genome_strand>
        <mrna_strand>AAAGAACAAGCAACCTCATGTTTTCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730976" ref_strand="+" ref_description="SGN-E730976 [LA25DB07]">
      <seq>cgcttatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaatggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggctgacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttattatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattacctaaaataaacttgatatttttgttttattaaaagttttcatcatcttgctttgggtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44729" stop="46193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45028" g_stop="45889" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E730976" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45028" e_stop="45889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATT</genome_strand>
        <mrna_strand>CGCTTATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAATGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTGACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATTATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTACCTAAAATAAACTTGATATTTTTGTTTTATTAAAAG-TTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370566" ref_strand="+" ref_description="SGN-E370566 [TUS-27-G14](-)">
      <seq>gaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44812" stop="46179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45112" g_stop="45887" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E370566" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45112" e_stop="45887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCA</genome_strand>
        <mrna_strand>GAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552661" ref_strand="+" ref_description="SGN-E552661 [cTSB-4-K10]">
      <seq>ctgataagttaactaacaggaaatgccatcaattaatactgagtgtggggcaacaccaaatgtggggtgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggatcaatgggatttggtttgcctgctgctataagtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaatagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcaccaattaagtatttggagctctatttagtatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44905" stop="46262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45204" g_stop="45962" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E552661" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45204" e_stop="45962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAGTTAACTAAC-GGAAATGCCATC-ATTAGTACTG-GTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAC</genome_strand>
        <mrna_strand>CTGATAAGTTAACTAACAGGAAATGCCATCAATTAATACTGAGTGTGGGGCAACACCAAATGTGGGGTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGATCAATGGGATTTGGTTTGCCTGCTGCTATAAGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAATAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553318" ref_strand="+" ref_description="SGN-E553318 [cTSB-4-J8]">
      <seq>agatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggctgatattgatggtgatgggagttttatcatgaatgtgcaagagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcaattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttccattgtgtgaaggattttagaattttcttgttctattggcagcaccaattaagtatttggagctctatttagtatgaactaagattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44906" stop="46271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45205" g_stop="45971" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E553318" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45205" e_stop="45971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTT-CATTGTGTGAAGGATTTTAGAA-TTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATG-ACTAAGATTAA</genome_strand>
        <mrna_strand>AGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGCTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAAGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCAATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCCATTGTGTGAAGGATTTTAGAATTTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAACTAAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552669" ref_strand="+" ref_description="SGN-E552669 [cTSB-4-K2]">
      <seq>tgataagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatactggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggagatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggaggttcaatgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagaaatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattactgagggtgatgggagacgttcctattgactttgagaagctacataactagctcaaggcattgtattatctaaaaataaacttaatatttatgtttacgtacaagtttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44905" stop="46189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45205" g_stop="45889" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E552669" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45205" e_stop="45889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACAT-CTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCT-AAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATT</genome_strand>
        <mrna_strand>TGATAAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATACTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGAGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGAGGTTCAATGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAAATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACTGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGCTCAAGGCATTGTATTATCTAAAAATAAACTTAATATTTATGTTTACGTACAAGTTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368934" ref_strand="+" ref_description="SGN-E368934 [TUS-25-F1](-)">
      <seq>gaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaaaagatcttccctaatatgctgaaatttgcaaaggcttgtggcgtacctgctgcaaaagtgtcacacagggatgattttagagctgccattcaaaaaatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaaaatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatttaaaataaacttaatatttatgtttacttaaaagtttttcattgtggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="44922" stop="46196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45222" g_stop="45891" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="690"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E368934" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45222" e_stop="45891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGT</genome_strand>
        <mrna_strand>GAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAAAGATCTTCCCTAATATGCTGAAATTTGCAAAGGCTTGTGGCGTACCTGCTGCAAAAGTGTCACACAGGGATGATTTTAGAGCTGCCATTCAAAAAATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAAATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATTTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712002" ref_strand="+" ref_description="SGN-E712002 [FB03CE01]">
      <seq>cggatcgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45072" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45370" g_stop="45909" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E712002" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45370" e_stop="45909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATT</genome_strand>
        <mrna_strand>CGGATCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713025" ref_strand="+" ref_description="SGN-E713025 [FB06CA10]">
      <seq>catgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcaccaattaagtatttggagctctatttagtatgactaagattaattacaagtgaagtagttaagttcgataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45118" stop="46300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45418" g_stop="45999" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="606"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E713025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45418" e_stop="45999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGACTAAGATTAATTACAAGTGAAGTAGTTAAGTTCGATAA</genome_strand>
        <mrna_strand>CATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGACTAAGATTAATTACAAGTGAAGTAGTTAAGTTCGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242530" ref_strand="+" ref_description="SGN-E242530 [cLED-30-O2]">
      <seq>tgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45180" stop="46229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45929" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E242530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCAC</genome_strand>
        <mrna_strand>TGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309823" ref_strand="+" ref_description="SGN-E309823 [cLEZ-10-O21]">
      <seq>aacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctgatgaggaagagatcttccctaatatgctgaaatctgtagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttatagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagcggcggcgctttcaaagatgtgattacggacggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45189" stop="46088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45489" g_stop="45788" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E309823" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45489" e_stop="45788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATG</genome_strand>
        <mrna_strand>AACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTGATGAGGAAGAGATCTTCCCTAATATGCTGAAATCTGTAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTATAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGCGGCGGCGCTTTCAAAGATGTGATTACGGACGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219360" ref_strand="+" ref_description="SGN-E219360 [cLEL-11-D14](-)">
      <seq>ttctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgatttcggagggtgatgggaaacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45224" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45524" g_stop="45898" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="398"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E219360" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45524" e_stop="45898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</genome_strand>
        <mrna_strand>TTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTTCGGAGGGTGATGGGAAACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217334" ref_strand="+" ref_description="SGN-E217334 [cLEL-21-L18](-)">
      <seq>acttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcctgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacctgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaaaatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45252" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45552" g_stop="45898" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="371"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E217334" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45552" e_stop="45898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</genome_strand>
        <mrna_strand>ACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCCTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACCTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAAATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221895" ref_strand="+" ref_description="SGN-E221895 [cLEL-10-A4](-)">
      <seq>cttgggtaatcctgctaatgaggaagagatcttccctanatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45253" stop="46219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45553" g_stop="45918" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="383"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E221895" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45553" e_stop="45918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTA-ATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCT</genome_strand>
        <mrna_strand>CTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTANATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221497" ref_strand="+" ref_description="SGN-E221497 [cLEL-10-A4](-)">
      <seq>ggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45257" stop="46219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45557" g_stop="45918" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E221497" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45557" e_stop="45918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCT</genome_strand>
        <mrna_strand>GGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221664" ref_strand="+" ref_description="SGN-E221664 [cLEL-10-A10](-)">
      <seq>agggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaaaatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45344" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45644" g_stop="45898" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="280"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E221664" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45644" e_stop="45898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</genome_strand>
        <mrna_strand>AGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAAATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221731" ref_strand="+" ref_description="SGN-E221731 [cLEL-10-A10](-)">
      <seq>atgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="45348" stop="46199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45648" g_stop="45898" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="276"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E221731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45648" e_stop="45898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</genome_strand>
        <mrna_strand>ATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350252" ref_strand="+" ref_description="SGN-E350252 [cTOS-4-L5]">
      <seq>tatcttcttattcactgtaaatgttggtttaagcctgaattacctaggggattccccaggtcgtttacacaggggtttacataagatcagctcagttctccggagaagttctagcaatcttggagagcctatttcatctctgcatgtgaatcttagggcagttaatgccaaggatatcagagtgaagattatagtggatgacaccattttgccttcatcattagcaacaacacctacagaagatggaaaagagaacggtgcaggaaatgggaaaagtttcacaaatggggcaagacgaagagaatccttaaagatgctggcaaatctgttggtggtggcataaaggaagtgatgtctgggaagtcatcagggaaatctaaagaggaagtagaatcatcagagaccgaaagaatgagctctgtggaatctgatatttctgatgcagagtctcaaccttcatcagttgattcacctccagttgtagcgccttctgttgacnacagttccacagccagctccggtattgagacttctctcttgatggagaattgtgatatacgcgatgtaatataaaacatatttggtgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="46014" stop="47204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46314" g_stop="46906" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E350252" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46314" e_stop="46906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACT</genome_strand>
        <mrna_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACNACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGGAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353861" ref_strand="+" ref_description="SGN-E353861 [cTOS-10-N10]">
      <seq>gagagcctatttcatctctgcatgtgaatcttagggcagttaatgccaaggatatcagagtgaagattatagtggatgacaccattttgccttcatcattagcaacaacacctacagaagatggaaaagagaacggtgcaggaaatgggaaaagtttcacaaatggggcaagacgaagagaatccttaaagatgctggcaaatctgttggtggtggcataaaggaagtgatgtctgggaagtcatcagggaaatctaaagaggaagtagaatcatcagagaccgaaagaatgagctctgtggaatctgatatttctgatgcagagtctcaaccttcatcagttgattcacctccagttgtagcgccttctgttgacaacagttccacagccagctccggtattgagacttctctcttgatgtagaattgtgatatacgcgatgtaatataaaacatatttggtgttacacttggacgaacttatttttcagttttgaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="46136" stop="47238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46436" g_stop="46938" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E353861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46436" e_stop="46938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</genome_strand>
        <mrna_strand>GAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202109" ref_strand="+" ref_description="SGN-E202109 [cLEC-7-K5]">
      <seq>tggtattaagtggtctacaaagagcactactagttgaggcaaaactacaaaacataaagtcactggaaacagctctagcttctcaatcatttatccagcttggacttttaacagggttaccaatggtcattgagttgggactagagcgcggctatcttaatgctcttaaagattttgttctgatgcaactgcagctggctgcagtattctttactttctcctatggaacaaagtctcattactatggcagaacaattcttcatggaggtgctaagtatagacctactggtcgtaaagatgaggcttttcatgccagcttcactgaaaactatagactttactctcggagtcacttcgtcaaaggatttgaacttctactcctgttgatagcatatgatttgggtagacgatcgtatgagagcaatttggcctatgttttaactacatatgcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="48924" stop="47869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48624" g_stop="48169" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E202109" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48624" e_stop="48169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</genome_strand>
        <mrna_strand>TGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGCTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTATTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGATGAGGCTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATAGCATATGATTTGGGTAGACGATCGTATGAGAGCAATTTGGCCTATGTTTTAACTACATATGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257743" ref_strand="+" ref_description="SGN-E257743 [cLEG-39-B22]">
      <seq>ttcaacagcctgatatcagtggttacgatttatgtgtttctatacggtcagctctacatggtattaagtggtctacaaagagcactactagttgaggcaaaactacaaaacataaagtcactggaaacagctctagcttctcaatcatttatccagcttggacttttaacagggttaccaatggtcattgagttgggactagagcgcggttatcttaatgctcttaaagattttgttctgatgcaactgcagctggctgcagttttctttactttctcctatggaacaaagtctcattactatggcagaacaattcttcatggaggtgctaagtatagacctactggtcgtaaagttgtggtttttcatgccagcttcactgaaaactatagactttactctcggagtcacttcgtcaaaggatttgaacttctactcctgttgattgtttatgatttgtttagacgatcgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="48980" stop="47908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48757" g_stop="48746" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48745" i_stop="48671" i_length="75">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48670" g_stop="48208" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="475" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E257743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48757" e_stop="48746"/>
          <exon e_start="48670" e_stop="48208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGCCTGGTAACTACATTAAATCCTGTAACTAATATGCTGGTTTATATGTCTCTTTTAATCTCTGCTGTCAAAACTATGCAGATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATG</genome_strand>
        <mrna_strand>TTCAACAGCCTG...........................................................................ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374544" ref_strand="+" ref_description="SGN-E374544 [TUS-38-P16](-)">
      <seq>taagtttgaaaaaccgaagattaaggagttcattgatttgatgagaagatggggattggacccaaaaaagaaatctttgtttttgatgacggaagtttcagacaatgtgattttttccagcaaaaacattagcacattgaaaatgttgacacccagaactttgaatcttttcgacatattggattttgaaaagctggttttcactaaatcagctgtggagtttttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaaaaaaaaaatggtggcgaggtggaggaaagtgctgaaagttttgagtaatatatgaacatggggcgaaaagggtttgttccattttaaaggaggctttcccttacagggagcttagtatatttccctttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtccctgactgcatttgtccattaccttcgttggaatagtttacttttgattttcgttccgctttcattgcccctttgagtttttgatttttatgataagagtgattagtttacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68913" stop="17266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68613" g_stop="68318" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="67965" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="576" r_length="280" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67964" i_stop="67430" i_length="535">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.412" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67429" g_stop="67389" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="617" r_length="41" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E374544" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68613" e_stop="68318"/>
          <exon e_start="68244" e_stop="67965"/>
          <exon e_start="67429" e_stop="67389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAAT</genome_strand>
        <mrna_strand>TAAGTTTGAAAAACCGAAGATTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAAAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTTTTTCCAGCAAAAACATTAGCACATTGAAAATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTTTGAAAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTTTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAAAAAAAAATG.........................................................................GTGGCGAGGTGGAGGAAAGTGCTGAAAGTTTTGAGTAATATATGAACATGGGGCGAAAAGGGTTTGTTCCATTTTAAAGGAGGCTTTCCCTTACAGGGAGCTTAGTATATTTCCCTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCCCTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTTTTGATTTTCGTTCCGCTTTCATTGCCCCTTTGAGTTTTTGATTTTTATGATAAGAGTGATTAGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745533" ref_strand="+" ref_description="SGN-E745533 [GI|47105921]">
      <seq>gatttgtggataacccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaccttcgttggaatagtttactcttgattttcgttccgctctcattgccactttgagttcttgatttttatgataagagtgattagtttactaattaaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69498" stop="17275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69199" g_stop="68318" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="67957" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="1170" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67956" i_stop="67411" i_length="546">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67410" g_stop="67390" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1171" r_stop="1191" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E745533" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69199" e_stop="68318"/>
          <exon e_start="68244" e_stop="67957"/>
          <exon e_start="67410" e_stop="67390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAA</genome_strand>
        <mrna_strand>GATTTGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219590" ref_strand="+" ref_description="SGN-E219590 [cLEL-11-N11](-)">
      <seq>agtttgatgataagtttgagaaaccgaagactaaggagttcattgatttcataagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcaggggtcattagcacattgtcgatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtgtagcaaagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgatattggttcatttcatgtcactgcctgcatttgtccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68923" stop="17275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68623" g_stop="68318" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68055" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="497" r_length="190" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68054" i_stop="67408" i_length="647">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67407" g_stop="67390" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="515" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E219590" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68623" e_stop="68318"/>
          <exon e_start="68244" e_stop="68055"/>
          <exon e_start="67407" e_stop="67390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCA-GAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAA</genome_strand>
        <mrna_strand>AGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTCATAAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGGGGTCATTAGCACATTGTCGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGTAGCAAAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATATTGGTTCATTTCATGTCACTGCCTGCATTTGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219329" ref_strand="+" ref_description="SGN-E219329 [cLEL-11-N12](-)">
      <seq>aatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcattcgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68842" stop="17281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68542" g_stop="68318" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68061" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="409" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68060" i_stop="67430" i_length="631">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67429" g_stop="67406" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="433" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E219329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68542" e_stop="68318"/>
          <exon e_start="68244" e_stop="68061"/>
          <exon e_start="67429" e_stop="67406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>AATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216226" ref_strand="+" ref_description="SGN-E216226 [cLEL-13-G23](-)">
      <seq>atctttgtttttgtgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68841" stop="17281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68541" g_stop="68318" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68061" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="407" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68060" i_stop="67430" i_length="631">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67429" g_stop="67406" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="431" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E216226" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68541" e_stop="68318"/>
          <exon e_start="68244" e_stop="68061"/>
          <exon e_start="67429" e_stop="67406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>ATCTTTGTTTTTG-TGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216114" ref_strand="+" ref_description="SGN-E216114 [cLEL-13-G23](-)">
      <seq>ctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctaagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaaaaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68839" stop="17281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68539" g_stop="68318" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68061" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="406" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68060" i_stop="67430" i_length="631">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67429" g_stop="67406" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="430" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E216114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68539" e_stop="68318"/>
          <exon e_start="68244" e_stop="68061"/>
          <exon e_start="67429" e_stop="67406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>CTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTAAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAAAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288558" ref_strand="-" ref_description="SGN-E288558 [cLES-8-I22]">
      <seq>tgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaccttcgttggaatagtttactcttgattttcgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68836" stop="67718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68536" g_stop="68318" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68017" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="447" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E288558" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288558" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68536" e_stop="68318"/>
          <exon e_start="68244" e_stop="68017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCC</genome_strand>
        <mrna_strand>TGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350753" ref_strand="+" ref_description="SGN-E350753 [cTOS-7-L1]">
      <seq>gtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaccttcgttggaatagtttactcttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68922" stop="67724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68622" g_stop="68318" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68024" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="526" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E350753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68622" e_stop="68318"/>
          <exon e_start="68244" e_stop="68024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTT</genome_strand>
        <mrna_strand>GTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234254" ref_strand="+" ref_description="SGN-E234254 [cLEL-8-B4](-)">
      <seq>ttttaatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttaaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68833" stop="67783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68533" g_stop="68318" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68077" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="384" r_length="168" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E234254" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68533" e_stop="68318"/>
          <exon e_start="68244" e_stop="68077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>TTTTAATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTAAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220143" ref_strand="+" ref_description="SGN-E220143 [cLEL-12-O5](-)">
      <seq>tttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtaattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68832" stop="67783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68532" g_stop="68318" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68077" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="383" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E220143" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68532" e_stop="68318"/>
          <exon e_start="68244" e_stop="68077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>TTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTAATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233999" ref_strand="+" ref_description="SGN-E233999 [cLEL-8-B4](-)">
      <seq>ctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggaaattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="68801" stop="67783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68318" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68244" g_stop="68077" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="352" r_length="168" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E233999" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68318"/>
          <exon e_start="68244" e_stop="68077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>CTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGAAATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726518" ref_strand="+" ref_description="SGN-E726518 [LA12AB10]">
      <seq>ggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69475" stop="68043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69175" g_stop="68343" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E726518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69175" e_stop="68343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAG</genome_strand>
        <mrna_strand>GGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726943" ref_strand="+" ref_description="SGN-E726943 [LA13BB02]">
      <seq>cccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69486" stop="68047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69186" g_stop="68347" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E726943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69186" e_stop="68347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTG</genome_strand>
        <mrna_strand>CCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701880" ref_strand="+" ref_description="SGN-E701880 [FA17AG09]">
      <seq>ccagtccataggtcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacaccccttcactcctcatagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggcgcgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgaacccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacaaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttatgattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagagctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaacactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattaccacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggntttcactaaatcagctgaggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68347" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E701880" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGG-CTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACA-CCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGC-CGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTG</genome_strand>
        <mrna_strand>CCAGTCCATAGGTCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCCTTCACTCCTCATAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCGCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAACCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACAACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTATGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGAGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAACACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTACCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGNTTTCACTAAATCAGCTGAGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729814" ref_strand="+" ref_description="SGN-E729814 [LA22AG07]">
      <seq>acccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagntcttgaatgaacgatacggaaatgatgatgatgatgatgatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69487" stop="68048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69187" g_stop="68348" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E729814" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69187" e_stop="68348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACT</genome_strand>
        <mrna_strand>ACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGNTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726271" ref_strand="+" ref_description="SGN-E726271 [LA11BD03]">
      <seq>acccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgaagatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69487" stop="68050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69187" g_stop="68350" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E726271" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69187" e_stop="68350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGA</genome_strand>
        <mrna_strand>ACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGAAGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729820" ref_strand="+" ref_description="SGN-E729820 [LA22AH03]">
      <seq>tgtggataacccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69495" stop="68051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69195" g_stop="68351" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E729820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69195" e_stop="68351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATG</genome_strand>
        <mrna_strand>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728157" ref_strand="+" ref_description="SGN-E728157 [LA16DE11]">
      <seq>ccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccgctgacctgcgcaaccaacgtcgcggtactgcttccacccttacgcgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctcgagcagaaacattagcacattgaagatgttgacacccagaactgtgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgaggagttcttgaatgaacgatacggaaatgatgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68358" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E728157" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGAT</genome_strand>
        <mrna_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCGCTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACGCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCGAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTGTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGAGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731771" ref_strand="+" ref_description="SGN-E731771 [LA28AF02]">
      <seq>ccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68395" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E731771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGA</genome_strand>
        <mrna_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374545" ref_strand="+" ref_description="SGN-E374545 [TUS-38-P16]">
      <seq>ccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69480" stop="68215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69180" g_stop="68515" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E374545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69180" e_stop="68515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTC</genome_strand>
        <mrna_strand>CCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729193" ref_strand="+" ref_description="SGN-E729193 [LA20BB04]">
      <seq>ctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattggtgtggaagagtttgatgataagtttgagaaaccgaagactaaggagtgcattgatttgatgacaacatggggattggacccaaaagagaaatctttgtttttgatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69462" stop="68223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69162" g_stop="68523" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E729193" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69162" e_stop="68523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACG</genome_strand>
        <mrna_strand>CTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGGTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTGCATTGATTTGATGACAACATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340579" ref_strand="+" ref_description="SGN-E340579 [cTOF-1-G7]">
      <seq>ccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68570" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E340579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGA</genome_strand>
        <mrna_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728913" ref_strand="+" ref_description="SGN-E728913 [LA19BE04]">
      <seq>ccaatccataggcttgcagtttagctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagatttgatgataagtttgagaaaccgaagactaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68587" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E728913" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTT-GCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGA</genome_strand>
        <mrna_strand>CCAATCCATAGGCTTGCAGTTTAGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGA-TTTGATGATAAGTTTGAGAAACCGAAGACTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728890" ref_strand="+" ref_description="SGN-E728890 [LA19BB10]">
      <seq>caatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69484" stop="68291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69184" g_stop="68591" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E728890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69184" e_stop="68591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTA</genome_strand>
        <mrna_strand>CAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730165" ref_strand="+" ref_description="SGN-E730165 [LA23BA11]">
      <seq>cttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69439" stop="68304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69139" g_stop="68604" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E730165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69139" e_stop="68604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAG</genome_strand>
        <mrna_strand>CTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725539" ref_strand="+" ref_description="SGN-E725539 [LA03DH07]">
      <seq>cccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaggattggtcagttaagattaacanaaaggaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69486" stop="68333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69186" g_stop="68633" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E725539" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69186" e_stop="68633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTG</genome_strand>
        <mrna_strand>CCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCT-AGGATTGGTCAGTTAAGATTAACANAAAGG-AAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283845" ref_strand="+" ref_description="SGN-E283845 [cLER-13-A15]">
      <seq>tctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagtttagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69398" stop="68346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69098" g_stop="68646" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E283845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69098" e_stop="68646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACA</genome_strand>
        <mrna_strand>TCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTTAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733118" ref_strand="+" ref_description="SGN-E733118 [LB04AB02]">
      <seq>cctatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69485" stop="68385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68685" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E733118" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAA</genome_strand>
        <mrna_strand>CCTATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300627" ref_strand="+" ref_description="SGN-E300627 [cLET-45-H9]">
      <seq>gttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggtgtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccagctggagaggttgtgtttgggccgaaacctaaggattggtcagttaagattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69472" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69173" g_stop="68687" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E300627" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69173" e_stop="68687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGG</genome_strand>
        <mrna_strand>GTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGTGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGCTGGAGAGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374269" ref_strand="+" ref_description="SGN-E374269 [TUS-33-D16]">
      <seq>tgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69471" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69171" g_stop="68687" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E374269" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69171" e_stop="68687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGG</genome_strand>
        <mrna_strand>TGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374268" ref_strand="+" ref_description="SGN-E374268 [TUS-33-D16](-)">
      <seq>ttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69472" stop="68389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69172" g_stop="68688" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E374268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69172" e_stop="68688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAG</genome_strand>
        <mrna_strand>TTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298333" ref_strand="+" ref_description="SGN-E298333 [cLET-41-K12]">
      <seq>cactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69294" stop="68478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68994" g_stop="68778" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E298333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68994" e_stop="68778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGA</genome_strand>
        <mrna_strand>CACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298942" ref_strand="+" ref_description="SGN-E298942 [cLET-42-C4]">
      <seq>gcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttgcaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="69474" stop="68479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69174" g_stop="68779" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E298942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69174" e_stop="68779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCG</genome_strand>
        <mrna_strand>GCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTGCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545328" ref_strand="-" ref_description="SGN-E545328 [TUS-68-B23](-)">
      <seq>tgggaccgggcccccctcgagttttttttttttttttttgtttttttttagtaaaaagaattatactaatatgggatttacaattgccatgaaaaacgtgttaatcaatactcctatctcaatgactatctataagtactccttcatccttaattagagatttcagatttgaatctttcagagtacaaagtcacctttacgaggaaacaatgaatccctcaatactaatgcgaatccagattagttgagctccaatatgaatatcagacatcaggtgcataaagcatagattcacaagattcttcccaagaaaactccctacatgcgccaacaaagttagtgaaatcttcaactccattttgatcatagtaacaatccttgaaccaaatattcatatcatcatcatcactaggagttgaagaatccatgtctgaatcaatccaacaatattcaagttcaccaagatcatcacaagacaaattagttgaattctctactttcatttgctcaaacaaaattgaatcatttgtattaacactaggaacaatattctctacttctaatgactcaatcacacttcttaataactcttcatcacttgcctcaaattctggttcttcaagaaatgacatgaaaacatcgttctcaatattgctaagtgcaagattttcattattacaatatgtggccattgacatgttgaatatgagataaaagagaagttgaaaaattgaaagatttttttggagaagattagctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="17273" stop="71494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70127" g_stop="70172" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.478"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70173" i_stop="70472" i_length="300">
            <donor d_prob="0.833" d_score="0.48"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70473" g_stop="71194" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="764" r_length="721" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E545328" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545328" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70127" e_stop="70172"/>
          <exon e_start="70473" e_stop="71194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACTCAACGCCCCTTTGCACGTTCATGGTCAGATATCATGAATGTAAGCAATATAAAATGGAGACCTAATATTAAATGATAATAAAGTGAGATGGACGTAACTTCAATACCATATTAAATTTAACTCAATTCAAAAGATAAATCGAGGAGATATGATTGTTCAAGAGTATATAAAGAAATCAATTTCTCCTCGTTCCACTTATGTTGAAACTTAACAAACTCAATTAAATTTTGAACTAATAATTTCAAATGTACCATAAAATTAGGTTCTGCAGCTTACATCCTAAAATTAGGTAAGCTATGCTTATTCCACATTGAATTAAAAGCAACAGAAAGTTCATAGGTCTTTAGTAAAAAGAATTTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</genome_strand>
        <mrna_strand>TGGGAC-C-GGGCCCCCCT-CGAGTTTTTTTTTTTTTTTTTTGTTT............................................................................................................................................................................................................................................................................................................TTTTTTAGTAAAAAGAA-TTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545329" ref_strand="+" ref_description="SGN-E545329 [TUS-68-B23]">
      <seq>attaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctggattcgcattagtattgagggattcattgtttcctcgtaaaggtgactttgtactctgaaagattcaaatctgaaatctctaattaaggatgaaggagtacttatagatagtcattgagataggagtattgattaacacgtttttcatggcaattgtaaatcccatattagtataaattctttttactaaaaaaaaaccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="71494" stop="70174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71194" g_stop="70476" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E545329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71194" e_stop="70476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</genome_strand>
        <mrna_strand>ATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309791" ref_strand="+" ref_description="SGN-E309791 [cLEZ-10-C9]">
      <seq>ttaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctggattcgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="71493" stop="70357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71193" g_stop="70657" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E309791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71193" e_stop="70657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATT</genome_strand>
        <mrna_strand>TTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228444" ref_strand="+" ref_description="SGN-E228444 [cLED-3-I17]">
      <seq>tttttttcctctaattttttgttatcaattaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="71521" stop="70365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71221" g_stop="70665" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E228444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71221" e_stop="70665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGA</genome_strand>
        <mrna_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702462" ref_strand="+" ref_description="SGN-E702462 [FA18DB07]">
      <seq>cttttctccattctcttggcattattcatcacacatcttgcccctatactcctgaacaaaatggtgttgccgaacgcaaacaccgtcacctcattgaaaccgtcgtcactctccttcatgagtctcatctccctgcatgaggcgttggccactgccaactatctcatcaaccacatgcccaaaccctccctctctaacacatctccttatgaatgtctctacacacaccgttcggattacactcaccttcgcccctttggttgtcttgcctatccttggctacgccctcacactcaacacaaacttcaactccggtccacaccatgcatctttctaggctaccatccctccataaaaggatacaaatgttttgaacccatctctcaaaaaacatatgtctctcgtcatattcgttttatcgaggaggactttccctatccccggttaagttctgtcactgccacgtccaacccactcggtattactccaatctttccaccgagctcacatggccttgtaccagcacccattaacccatccatcatacacacaccacccaatcccaacactctcatcccatctggatcacccagcacccacaatttacccatcccaccaattttcaaccctcctcattaacaacctccaccagctgaaacagcaccacctccacccccacccccatcccctttacatcacatgcaaacctattccaaatccggcattttcaagcccaaagcctacaccaccactttacctgctccctctccctctgaacctattacctacaaacaagcatctaccaacccccttttggtgtcaggctaaggatgatgaatacaggtctcttattaatcaacatacttggcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="91097" stop="89618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90797" g_stop="89918" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E702462" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90797" e_stop="89918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACA--ACC-CCT---CCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCC-TTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</genome_strand>
        <mrna_strand>CTTTTCTCCATTCTCTTGGCATTATTCATCACACATCTTGCCCCTATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTCGTCACTCTCCTTCATGAGTCTCATCTCCCTGCA----------T-GAGGCGTTGGCCACTGCCAACTATCTCATCAACCACATGCCCAAACCCTCCCTCTCTAACACATCTCCTTATGAATGTCTCTACACACACCGTTCGGATTACACTCACCTTCGCCCCTTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACTCCGGTCCACACCATGCATCTTTCTAGGCTACCATCCCTCCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATATTCGTTTTATCGAGGAGGACTTTCCCTATCCCCGGTTAAGTTCTGTCACTGCCACGTCCAACCCACTCGGTATTACTCCAATCTTTCCACCGAGCTCACATGGCCTTGTACCAGCACCCATTAACCCATCCATCATACACACACCACCCAATCCCAACACTCTCATCCCATCTGGATCACCCAGCACCCACAATTTACCCATCCCACCAATTTTCAACCCTCCTCATTAACAACCTCCACCAGCTGAAACAGCACCACCTCCACCCCCACCCCCATCCCCTTTACATCACATGCAAACCTATTCCAAATCCGGCATTTTCAAGCCCAAAGCCTACACCACCACTTTACCTGCTCCCTCTCCCTCTGAACCTATTACCTACAAACAAGCATCTACCAACCCCCTTTTGGTGTCAGGCTAAGGATGATGAATACAGGTCTCTTATTAATCAACATACTTGGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544067" ref_strand="+" ref_description="SGN-E544067 [TUS-66-D9](-)">
      <seq>ttttttttatgttattattgaacgtcatacaactggttagctgctaactttagtttcaaagtgacattgttgtgcagaagggatacttatccctcctatcctttacagttgttgatataaacaattcggtgaccaaactattggctttaggtgccgagttggatggccccatcaaatatgaaatccatggaaaggttttgctgctttgaggtgtgtggatggacatatgttaggtctttatcagccgtcctaaggcatcctcgaaacaaccacttgcaggtaaaagtaatcacgacttctgtaacaaggcaaattggtttctcagcatagattttgcattcgggtgtactgttgaaagagagaatcgactcttgtacatggaggtgaagcacatatagggagtgttacagcaagaaacaatcaatacagtagctgaattcctactgtatttgtttttgatgttctgttctggttatccttttgtgtaacatgatgttttgtattcaccaacatgaattgtggtgctccacccttaaccagaggactcggattcgagcttccggtatggagaaaattttgttgagaaagccactcttgaataggtcatgcactgtacgatttggattcaatcggagctccaacgtgggctcctgacactggatgggaaaaccaaaaaaaaaaacatgatgttgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="94399" stop="17273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94099" g_stop="93906" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93905" i_stop="93757" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93756" g_stop="93250" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="701" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93249" i_stop="92939" i_length="311">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92938" g_stop="92898" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="742" r_length="41" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E544067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94099" e_stop="93906"/>
          <exon e_start="93756" e_stop="93250"/>
          <exon e_start="92938" e_stop="92898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAGGTAACCAAAATTTCTTAAGGTTGCTTTCAAACTTGTTGACCAGCATTGGTTTATGCTCGTTATTTACACATCGATTCAGAATTTTGTTCTGCATTCAGCATTTATGTTGATGAAACTGACCTATCGCATACTTTATATGGTCCTTGTAGGTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTTGTTTATTTAAATCTCTCCTTTTCTAACATATATCCATATCCTGATATTAAAACCCTTCATCCAAATGATTCTATGAATGAATGCCTATTAGCAATATAGTCGATCAAGAAAATTAATAGGAGTAACTATAATTAGCACAAATTATGTGACTCATGTGTAATTATTTATTCATGCTTTCTCTATATATATCGGATGTACAACCCTTAATCAATAAGACTCATTATTATATCATGGTATCAAAGCTAAGGTTAAACTCTTCCAAAACCTAAAAAAAAAAAACCCTAACCTTCTTCTTCTTCCTTGCTGCTGCTGCTGCCGATCAACATCAAAACAAACAAAAAAAAAATTCTCGGCTGCCTCTC</genome_strand>
        <mrna_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG.....................................................................................................................................................GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTTGTTTATTTAA.......................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544068" ref_strand="+" ref_description="SGN-E544068 [TUS-66-D9]">
      <seq>gagagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaggctgtttcattgcatacaaggatgatttgttgtttgaaagagttagtacttatcaagctaaggtcgagctgttataaaccttacctgttactgcatcacctcgccagtcctagatgtgctgcttagtgtagagttctgttttgtttgctttgaagatatatggtaagcctagcttcatgcccttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="95372" stop="93991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95072" g_stop="94291" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E544068" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95072" e_stop="94291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</genome_strand>
        <mrna_strand>GAGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAAGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302815" ref_strand="+" ref_description="SGN-E302815 [cLEY-2-M5]">
      <seq>agagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaagctgtttcattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="95371" stop="94164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95071" g_stop="94464" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E302815" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95071" e_stop="94464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCAT</genome_strand>
        <mrna_strand>AGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAAGCTGTTTCATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716536" ref_strand="+" ref_description="SGN-E716536 [FB17BC12]">
      <seq>cgaataaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgagttcagggctagagccaatgagatgtggtttacttttgttatggacactgcaattgacatttaagaggcaacaaagtttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="114633" stop="116038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114931" g_stop="115186" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115187" i_stop="115282" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115283" g_stop="115738" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="712" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E716536" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114931" e_stop="115186"/>
          <exon e_start="115283" e_stop="115738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</genome_strand>
        <mrna_strand>CGAATAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGCCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTAAGAGGCAACAAAGTTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244181" ref_strand="+" ref_description="SGN-E244181 [cLEE-1-D6]">
      <seq>aagaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttcagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcaaccaaatcctccttcagctgaaggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="114633" stop="115754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114933" g_stop="115186" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115187" i_stop="115282" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115283" g_stop="115454" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="426" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E244181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114933" e_stop="115186"/>
          <exon e_start="115283" e_stop="115454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTA</genome_strand>
        <mrna_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTCAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAACCAAATCCTCCTTCAGCTGAAGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322224" ref_strand="+" ref_description="SGN-E322224 [cTOB-24-P21]">
      <seq>agaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgangtcagggctagagtcaatgagatgtggtttacttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="114634" stop="115995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114934" g_stop="115186" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115187" i_stop="115282" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115283" g_stop="115695" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="666" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E322224" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114934" e_stop="115186"/>
          <exon e_start="115283" e_stop="115695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</genome_strand>
        <mrna_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGANGTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720261" ref_strand="+" ref_description="SGN-E720261 [FC10BB07]">
      <seq>gaaaatttcattgagacaaattaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccaaaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagnaaaaaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117769" stop="119312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118068" g_stop="118368" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="119013" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="858" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="859" polyA_stop="883"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E720261" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118068" e_stop="118368"/>
          <exon e_start="118457" e_stop="119013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGA</genome_strand>
        <mrna_strand>GAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAAAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728211" ref_strand="+" ref_description="SGN-E728211 [LA17AC07]">
      <seq>acattaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagtttcagaacagagttaatgagatatgggttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117787" stop="119214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118085" g_stop="118368" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118914" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="742" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E728211" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118085" e_stop="118368"/>
          <exon e_start="118457" e_stop="118914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATC</genome_strand>
        <mrna_strand>ACATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTTCAGAACAGAGTTAATGAGATATGGGTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344561" ref_strand="+" ref_description="SGN-E344561 [cTOF-14-E21]">
      <seq>attaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatttgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactncccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117787" stop="119210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118087" g_stop="118368" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118910" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="736" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E344561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118087" e_stop="118368"/>
          <exon e_start="118457" e_stop="118910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACT</genome_strand>
        <mrna_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATTTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTNCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733942" ref_strand="+" ref_description="SGN-E733942 [LB11BD12]">
      <seq>cattagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117802" stop="119305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118098" g_stop="118368" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="119005" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="820" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E733942" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118098" e_stop="118368"/>
          <exon e_start="118457" e_stop="119005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGA</genome_strand>
        <mrna_strand>CATTAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216767" ref_strand="-" ref_description="SGN-E216767 [cLEL-1-L7](-)">
      <seq>ggttatgagaatgcttagtgtaagtatgaatctgttgatgattaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattccccgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagagatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117803" stop="118892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118102" g_stop="118368" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118592" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="403" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E216767" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118102" e_stop="118368"/>
          <exon e_start="118457" e_stop="118592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</genome_strand>
        <mrna_strand>GGTTATGAGAATGCTTAGTGTAAGTATGAATCTGTTGATGATTAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCCCCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGAGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733415" ref_strand="+" ref_description="SGN-E733415 [LB04DG01]">
      <seq>cgcattaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117810" stop="119296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118103" g_stop="118368" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118996" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="805" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E733415" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118103" e_stop="118368"/>
          <exon e_start="118457" e_stop="118996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAAT</genome_strand>
        <mrna_strand>CGCATTAAA-TGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734945" ref_strand="+" ref_description="SGN-E734945 [LB14AA11]">
      <seq>atataaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagagtttggtggntaaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117806" stop="119330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118106" g_stop="118368" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="119038" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="845" r_length="582" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E734945" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118106" e_stop="118368"/>
          <exon e_start="118457" e_stop="119038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTG</genome_strand>
        <mrna_strand>ATATAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGNTAAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297002" ref_strand="+" ref_description="SGN-E297002 [cLET-26-P6]">
      <seq>aaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagcctagtgatggacctttttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117808" stop="118858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118108" g_stop="118368" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118558" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E297002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118108" e_stop="118368"/>
          <exon e_start="118457" e_stop="118558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGC</genome_strand>
        <mrna_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCTAGTGATGGACCTTTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548440" ref_strand="+" ref_description="SGN-E548440 [TUS-61-D13]">
      <seq>gtttgtttctgttccttgtttccaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117852" stop="119273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118152" g_stop="118368" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118973" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="733" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E548440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118152" e_stop="118368"/>
          <exon e_start="118457" e_stop="118973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</genome_strand>
        <mrna_strand>GTTTGTTTCTGTTCCTTGTTTCC-AATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291868" ref_strand="+" ref_description="SGN-E291868 [cLET-7-L17]">
      <seq>tttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117853" stop="119177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118153" g_stop="118368" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="118877" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="637" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E291868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118153" e_stop="118368"/>
          <exon e_start="118457" e_stop="118877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</genome_strand>
        <mrna_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733775" ref_strand="+" ref_description="SGN-E733775 [LB10DF08]">
      <seq>cgatattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagagtttggtggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="117943" stop="119330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118241" g_stop="118368" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118457" g_stop="119037" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="709" r_length="581" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E733775" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118241" e_stop="118368"/>
          <exon e_start="118457" e_stop="119037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGT</genome_strand>
        <mrna_strand>CGATATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216850" ref_strand="+" ref_description="SGN-E216850 [cLEL-1-L7](-)">
      <seq>atctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgcccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgatacattctatattgcaaataagatagattgtgtaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="+" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="118330" stop="119300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118630" g_stop="118999" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="385"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="+" ref_id="SGN-E216850" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118630" e_stop="118999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACA</genome_strand>
        <mrna_strand>ATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGCCCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGATACATTCTATATTGCAAATAAGATAGATTGTGTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357383" ref_strand="+" ref_description="SGN-E357383 [cTOS-23-L9]">
      <seq>ctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaatggaacaactggtcattttttgttattttgcagttgtaaatatgcttgctgtagctaattatcttgattctttacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120148" stop="118967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119848" g_stop="119264" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E357383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119848" e_stop="119264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</genome_strand>
        <mrna_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713930" ref_strand="+" ref_description="SGN-E713930 [FB10AC03]">
      <seq>ggataccttaaatgcatcattttctgggcattacatatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagagactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtctagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcatttcctagttcaatggaacaactggtccttttttgttattttgcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120182" stop="119008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119983" g_stop="119308" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="712" r_length="676" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E713930" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119983" e_stop="119308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTG</genome_strand>
        <mrna_strand>ATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGAGACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTCTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTCCTAGTTCAATGGAACAACTGGTCCTTTTTTGTTATTTTGCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216403" ref_strand="+" ref_description="SGN-E216403 [cLEL-13-O11](-)">
      <seq>actgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120062" stop="102782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119762" g_stop="119327" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E216403" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119762" e_stop="119327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATT</genome_strand>
        <mrna_strand>ACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216050" ref_strand="+" ref_description="SGN-E216050 [cLEL-13-O11](-)">
      <seq>attcttttcagaaagtaagggttctgttttggattcaactgctgggactagcattccaagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaaaaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="119931" stop="119044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119631" g_stop="119345" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E216050" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119631" e_stop="119345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</genome_strand>
        <mrna_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATTCCAAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377016" ref_strand="+" ref_description="SGN-E377016 [TUS-20-I3]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatagaaacaaacttactattcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120182" stop="119165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120093" g_stop="119465" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E377016" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120093" e_stop="119465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATAGAAACAAACTTACTATTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233212" ref_strand="+" ref_description="SGN-E233212 [cLED-6-N18]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120182" stop="119180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120093" g_stop="119480" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E233212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120093" e_stop="119480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243871" ref_strand="+" ref_description="SGN-E243871 [cLED-35-E12]">
      <seq>caatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttatggattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120166" stop="119293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119866" g_stop="119593" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E243871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119866" e_stop="119593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAAC</genome_strand>
        <mrna_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTATGGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241415" ref_strand="+" ref_description="SGN-E241415 [cLED-28-F14]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaagcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120182" stop="119325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120093" g_stop="119625" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E241415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120093" e_stop="119625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAAGCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325054" ref_strand="+" ref_description="SGN-E325054 [cTOC-13-L13]">
      <seq>accaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatgcttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.2" temp_strand="-" temp_description="C07HBa0059A10.2  AC212621.2 htgs_phase:2 submitted_to_sgn_as:gi|205277496|gb|AC212621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***">
        <position start="120182" stop="119461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120048" g_stop="119761" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.2" gen_strand="-" ref_id="SGN-E325054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120048" e_stop="119761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</genome_strand>
        <mrna_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATGCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>159</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="47"/>
            <exon e_start="1369" e_stop="1496"/>
            <exon e_start="1596" e_stop="2516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="47" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.892">
            <gDNA_intron_boundary i_start="48" i_stop="1368" i_length="1321"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1369" e_stop="1496" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1497" i_stop="1595" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1596" e_stop="2516" e_length="921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="47"/>
              <exon start="1369" stop="1496"/>
              <exon start="1596" stop="2303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="47"/>
              <exon start="1369" stop="1496"/>
              <exon start="1596" stop="2051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="47"/>
              <exon start="1369" stop="1496"/>
              <exon start="1596" stop="2027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="47"/>
              <exon start="1369" stop="1496"/>
              <exon start="1596" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1420" stop="1496"/>
              <exon start="1596" stop="2402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1476" stop="1496"/>
              <exon start="1596" stop="2363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1660" stop="2451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="2307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="2161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1783" stop="2474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1822" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1837" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1928" stop="2451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2043" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314651" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAG : GAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG : GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</gDNA_template>
            <first_frame> K  L  D  T  *  *  R  V  R  *  K  *  H  T  K  R :   K  G  D  Y  S  P  I  I  W  Y  *  S  G  S  T  G  W  *  F  Y  V  C  T  V  V  L  V  P  S  *  P  *  K  P  *  S  H  K  A  H  Q  S   : G  Y  *  R  L  C  K  W  *  N  K  A  G  L  *  L  V  R  L  *  C  W  T  G  *  I  F  A  Q  E  L  L  *  N  G  L  L  D  C  C  K  H  Q  R  S  C  H  F  Q  *  S  W  Q  *  Y  *  *  T  N  V  S  I  W  E  E  S  W  F  I  V  P  D  C  *  *  H  I  G  L  H  T  I  S  R  T  T  G  K  A  S  W  K  *  L  S  Q  G  K  P  Y  C  T  S  T  F  C  I  R  E  R  A  K  P  *  E  Y  N  R  I  R  I  S  R  C  W  F  S  R  G  G  H  Q  S  G  E  K  L  W  G  N  S  T  S  T  R  F  G  K  G  E  S  *  F  S  N  A  E  P  K  M  P  S  I  *  S  F  S  S  S  T  *  G  N  R  E  V  *  S  G  E  N  *  I  D  E  N  K  G  R  N  Y  T  T  L  V  Y  Y  S  L  K  A  L  H  I  *  Q  Y  L  E  H  R  V  E  A  I  T  I  V  *  M  A  T  T  I  R  T  K  V  L  H  Y  V  H  I  L  Y  P  Y  R  L  *  F  S  V  P  N  T  A  I  W  C  S  S  I  L  Y  N  L  A  N  K  L  S  N  F  N  C  C  C  T  L  K  K  F  H  I  T  N  N  V  M  Y  *  Y  L  L  L  A  F  L  D  E  H  I  C  Y  K  L  I  I  Q  *  T  Y  Y  T  L  </first_frame>
            <second_frame>  S  L  I  H  D  D  V  L  D  E  S  D  T  R  R   : G  K  E  T  I  H  Q  L  Y  G  T  R  V  A  V  L  A  G  D  F  M  F  A  Q  S  S  W  Y  L  A  N  L  E  N  L  E  V  I  K  L  I  S  Q  :  V  I  K  D  F  A  S  G  E  I  K  Q  A  S  N  L  F  D  C  D  V  G  L  D  E  Y  L  L  K  S  Y  Y  K  T  A  S  L  I  A  A  S  T  K  G  A  A  I  F  S  E  V  G  S  D  I  S  E  Q  M  F  Q  Y  G  R  N  L  G  L  S  F  Q  I  V  D  D  I  L  D  F  T  Q  S  A  A  Q  L  G  K  P  A  G  S  D  L  A  K  G  N  L  T  A  P  V  L  F  A  L  E  K  E  P  N  L  R  N  I  I  E  S  E  F  H  D  A  G  S  L  E  E  A  I  N  L  V  K  S  C  G  G  I  Q  R  A  Q  D  L  A  K  E  K  A  D  L  A  M  Q  N  L  K  C  L  P  S  S  P  F  Q  A  A  L  E  E  I  V  K  Y  N  L  E  R  I  E  *  T  K  T  K  D  E  T  I  Q  L  W  F  I  I  L  *  K  L  F  I  S  N  N  I  W  S  T  E  *  K  L  L  L  *  F  E  W  Q  Q  R  S  E  R  K  C  F  T  M  F  I  Y  Y  T  H  T  G  C  N  F  Q  F  L  I  Q  Q  Y  G  V  P  A  F  F  I  I  W  L  I  N  C  Q  I  S  T  V  V  V  H  *  R  N  F  T  L  Q  I  M  S  C  I  S  I  Y  Y  W  L  S  W  M  N  I  Y  V  I  N  *  *  Y  N  K  H  I  T  P  * </second_frame>
            <third_frame>   A  *  Y  M  M  T  C  *  M  K  V  T  H  E  E  :  E  R  R  L  F  T  N  Y  M  V  L  E  W  Q  Y  W  L  V  I  L  C  L  H  S  R  P  G  T  *  L  T  L  K  T  L  K  S  *  S  S  S  V  R :   L  L  K  T  L  Q  V  V  K  *  S  R  P  L  T  C  S  T  V  M  L  D  W  M  N  I  C  S  R  V  T  I  K  R  P  P  *  L  L  Q  A  P  K  E  L  P  F  S  V  K  L  A  V  I  L  V  N  K  C  F  N  M  G  G  I  L  V  Y  R  S  R  L  L  M  T  Y  W  T  S  H  N  Q  P  H  N  W  E  S  Q  L  E  V  T  *  P  R  E  T  L  L  H  Q  Y  F  L  H  *  R  K  S  Q  T  L  G  I  *  S  N  Q  N  F  T  M  L  V  L  S  R  R  P  S  I  W  *  K  A  V  G  E  F  N  E  H  K  I  W  Q  R  R  K  L  I  *  Q  C  R  T  *  N  A  F  H  L  V  L  F  K  Q  H  L  R  K  S  *  S  I  I  W  R  E  L  N  R  R  K  Q  R  T  K  L  Y  N  F  G  L  L  F  S  E  S  S  S  Y  L  T  I  S  G  A  Q  S  R  S  Y  Y  Y  S  L  N  G  N  N  D  Q  N  E  S  A  S  L  C  S  Y  I  I  P  I  Q  V  V  I  F  S  S  *  Y  S  N  M  V  F  Q  H  S  L  *  F  G  *  *  I  V  K  F  Q  L  L  L  Y  T  K  E  I  S  H  Y  K  *  C  H  V  L  V  F  T  I  G  F  L  G  *  T  Y  M  L  *  I  D  N  T  I  N  I  L  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2" stop="47"/>
                    <exon start="1369" stop="1496"/>
                    <exon start="1596" stop="2144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLIHDDVLDESDTRRGKETIHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDVGLDEYLLKSYYKTASLIAASTKGAAIFSEVGSDISEQMFQYGRNLGLSFQIVDDILDFTQSAAQLGKPAGSDLAKGNLTAPVLFALEKEPNLRNIIESEFHDAGSLEEAINLVKSCGGIQRAQDLAKEKADLAMQNLKCLPSSPFQAALEEIVKYNLERIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2119" stop="2331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIWRELNRRKQRTKLYNFGLLFSESSSYLTISGAQSRSYYYSLNGNNDQNESASLCSYIIPIQVVIFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28480" PGL_stop="24836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28480" e_stop="28169"/>
            <exon e_start="27399" e_stop="27334"/>
            <exon e_start="25973" e_stop="25901"/>
            <exon e_start="25431" e_stop="25314"/>
            <exon e_start="25046" e_stop="24836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28480" e_stop="28169" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28168" i_stop="27400" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27399" e_stop="27334" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27333" i_stop="25974" i_length="1360"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25973" e_stop="25901" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.886">
            <gDNA_intron_boundary i_start="25900" i_stop="25432" i_length="469"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25431" e_stop="25314" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25313" i_stop="25047" i_length="267"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="25046" e_stop="24836" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28480" stop="28169"/>
              <exon start="27399" stop="27334"/>
              <exon start="25973" stop="25901"/>
              <exon start="25431" stop="25314"/>
              <exon start="25046" stop="24836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28480" stop="28169"/>
              <exon start="27399" stop="27334"/>
              <exon start="25973" stop="25901"/>
              <exon start="25431" stop="25314"/>
              <exon start="25046" stop="24837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28479" stop="28169"/>
              <exon start="27399" stop="27334"/>
              <exon start="25973" stop="25901"/>
              <exon start="25431" stop="25340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG : TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG : GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT : GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT : GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</gDNA_template>
            <first_frame> Q  K  F  Q  L  F  L  V  D  N  S  K  F  Q  L  *  V  K  E  A  R  T  V  I  I  T  T  M  A  T  T  M  T  T  T  T  T  T  M  D  T  T  I  T  T  K  R  R  P  N  H  P  H  H  G  Y  Q  Q  H  H  Q  K  *  L  N  M  V  L  F  N  H  L  L  N  Q  *  L  V  F  L  C  Q  F  L  H  L  D  Q  Y  L  N  L  L  N  T  M  L  V  A  I  I  L  F  Q  :  F  L  H  L  E  Q  Y  L  N  L  L  N  T  M  L  V  A  I  S  P  F  Q  :  V  M  *  L  M  R  G  D  L  *  Q  S  P  A  F  L  S  V  L  V  L  A  G  S   : C  S  L  L  V  S  F  L  L  A  S  L  G  M  L  L  H  L  S  R  F  A  T  D  Q  L  I  I  E  R  N  Q  D  S  L  H  A  P  L  L :   L  F  S  L  *  L  V  I  S  Y  L  G  *  H  G  Y  Y  *  Q  H  N  G  D  Q  L  L  W  S  I  R  V  L  A  S  L  L  D  *  C  T  F  Y  S  E  H  F  C  K  T  K  V  T  C  Y  N  *  I  N  N  Y  M  C  F  L  Y  *  S  E  I  I </first_frame>
            <second_frame>  K  N  F  N  Y  F  *  L  I  T  P  N  F  N  Y  E  *  R  R  Q  G  Q  S  L  S  P  P  W  P  P  L  *  P  P  P  P  P  L  W  T  P  P  S  P  P  R  E  D  P  T  T  P  T  M  A  T  N  S  T  T  R  S  S  *  I  W  Y  F  S  T  T  S  S  T  S  N  W  F  S  S  A  S  S  S  T  W  I  S  T  *  T  F  *  I  L  C  S  W  L  S  F  C  S  S :   S  S  T  W  S  S  T  *  T  F  *  I  L  C  S  W  L  S  V  R  S  R :   L  C  D  *  *  E  E  T  C  N  R  A  P  P  S  F  R  Y  W  S  W  L  V  L  :  V  H  Y  W  F  L  S  C  W  L  P  L  V  C  C  C  I  Y  P  A  L  Q  Q  I  N  *  S  S  R  E  I  R  I  R  C  M  H  H  C   : C  C  S  R  C  N  W  *  Y  R  I  W  V  D  M  D  I  I  N  S  I  M  V  I  N  F  C  G  V  F  V  F  *  L  V  C  L  I  N  A  H  F  I  Q  N  I  S  V  K  Q  K  L  H  V  I  I  K  *  I  I  I  C  A  S  C  I  N  Q  K  *   </second_frame>
            <third_frame>   K  I  S  T  I  F  S  *  *  L  Q  I  S  I  M  S  E  G  G  K  D  S  H  Y  H  H  H  G  H  H  Y  D  H  H  H  H  H  Y  G  H  H  H  H  H  Q  E  K  T  Q  P  P  P  P  W  L  P  T  A  P  P  E  V  A  E  Y  G  T  F  Q  P  P  P  Q  P  V  I  G  F  P  L  P  V  P  P  P  G  S  V  L  E  P  S  E  Y  Y  A  R  G  Y  H  S  V  P   : V  P  P  P  G  A  V  L  E  P  S  E  Y  Y  A  R  G  Y  Q  S  V  P   : G  Y  V  I  D  E  R  R  P  V  T  E  P  R  L  P  F  G  I  G  L  G  W  F  L :   F  I  I  G  F  F  L  A  G  F  P  W  Y  V  A  A  F  I  P  L  C  N  R  S  I  D  H  R  E  K  S  G  F  V  A  C  T  I  A  :  A  V  L  A  V  I  G  N  I  V  F  G  L  T  W  I  L  L  T  A  *  W  *  S  T  S  V  E  Y  S  C  S  S  *  F  A  *  L  M  H  I  L  F  R  T  F  L  *  N  K  S  Y  M  L  *  L  N  K  *  L  Y  V  L  P  V  L  I  R  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28451" stop="28169"/>
                    <exon start="27399" stop="27334"/>
                    <exon start="25973" stop="25901"/>
                    <exon start="25431" stop="25314"/>
                    <exon start="25046" stop="24984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQISIMSEGGKDSHYHHHGHHYDHHHHHYGHHHHHQEKTQPPPPWLPTAPPEVAEYGTFQPPPQPVIGFPLPVPPPGSVLEPSEYYARGYHSVPVPPPGAVLEPSEYYARGYQSVPGYVIDERRPVTEPRLPFGIGLGWFLFIIGFFLAGFPWYVAAFIPLCNRSIDHREKSGFVACTIAAVLAVIGNIVFGLTWILLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34729" PGL_stop="29415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34729" e_stop="34421"/>
            <exon e_start="32879" e_stop="32751"/>
            <exon e_start="32624" e_stop="32517"/>
            <exon e_start="31387" e_stop="31253"/>
            <exon e_start="30584" e_stop="30543"/>
            <exon e_start="30430" e_stop="30371"/>
            <exon e_start="30288" e_stop="30235"/>
            <exon e_start="29927" e_stop="29903"/>
            <exon e_start="29822" e_stop="29486"/>
            <exon e_start="29430" e_stop="29415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="34729" e_stop="34421" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32879" e_stop="32751" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="32750" i_stop="32625" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32624" e_stop="32517" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="32516" i_stop="31388" i_length="1129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31387" e_stop="31253" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30584" e_stop="30543" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30430" e_stop="30371" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30288" e_stop="30235" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29927" e_stop="29903" e_length="25"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29822" e_stop="29486" e_length="337"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29485" i_stop="29431" i_length="55"/>
          </intron>
          <exon e_serial="10" e_score="0.812">
            <gDNA_exon_boundary e_start="29430" e_stop="29415" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34729" stop="34421"/>
              <exon start="32879" stop="32751"/>
              <exon start="32624" stop="32555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34616" stop="34421"/>
              <exon start="32879" stop="32751"/>
              <exon start="32624" stop="32517"/>
              <exon start="31387" stop="31253"/>
              <exon start="30584" stop="30543"/>
              <exon start="30430" stop="30371"/>
              <exon start="30288" stop="30235"/>
              <exon start="29927" stop="29903"/>
              <exon start="29822" stop="29486"/>
              <exon start="29430" stop="29415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34616" stop="34421"/>
              <exon start="32879" stop="32751"/>
              <exon start="32624" stop="32517"/>
              <exon start="31387" stop="31253"/>
              <exon start="30584" stop="30543"/>
              <exon start="30430" stop="30371"/>
              <exon start="30288" stop="30235"/>
              <exon start="29927" stop="29903"/>
              <exon start="29822" stop="29784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34615" stop="34421"/>
              <exon start="32879" stop="32751"/>
              <exon start="32624" stop="32517"/>
              <exon start="31387" stop="31260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32801" stop="32751"/>
              <exon start="32624" stop="32517"/>
              <exon start="31387" stop="31253"/>
              <exon start="30584" stop="30543"/>
              <exon start="30430" stop="30371"/>
              <exon start="30288" stop="30235"/>
              <exon start="29927" stop="29903"/>
              <exon start="29822" stop="29724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30564" stop="30543"/>
              <exon start="30430" stop="30371"/>
              <exon start="30288" stop="30235"/>
              <exon start="29927" stop="29903"/>
              <exon start="29822" stop="29512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAAAATACGGGAACATTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC : GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG : GAAACATTCAAAAACATCATGCAGA : ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCCAA : AAAAAAGAAGAAAAAT</gDNA_template>
            <first_frame> K  T  I  A  S  W  K  V  T  F  H  *  R  H  S  S  C  K  I  R  E  H  F  I  E  I  I  D  S  K  D  K  I  M  L  R  F  R  W  F  E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  T  K  F  P  G  V  K  S  I  I  S  K  A  S  N  A  K  A  D  I  F  V  E  P  G  D  K  I  Y  F  G  D  I  F  L  E  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D  Y  K  G  F  T  :  V  S  S  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  M  D  V  A  V  P  A  N  M  V  C  G  L  Q  E  T  K  S  E  A  C  *  I  L  L  S  W  S  L  R  M  *  M  G  S  K  V  Y  T  I  *  S  E  S  *  Q  N  N  V  *  L  E  K  L  N  K  I  L  F  Q  E  A  M  *  F  *  L  I  R  I  L  N  I  C  M  *  L  D  F  *  D  G  N  N  E  K  *  N  L  S  V  A  A  F  S  E  L  *  *  Q  F  R  S  K :   K  K  K  K  N </first_frame>
            <second_frame>  K  P  S  P  V  G  K  L  L  S  I  D  V  T  L  L  V  K  Y  G  N  I  L  *  R  *  S  T  V  K  I  R  S  C  *  D  S  D  G  S  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   Q  S  S  L  V  *  N  Q  S  Y  Q  K  Q  A  M  Q  K  L  I  F  L  L  N  L  V  I  R  S  T  L  V  I  F  F  W  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M  T  T  K  G  S  P :   S  A  Q  W  E  R  R  C  Y  T  I  H  A  Y  Q  K  I  R :   K  H  S  K  T  S  C  R  :  I  *  I  C  H  I  Q  K  *  W  T  S  Q  F  Q  L  T  W  F  V  D  Y  K  R  Q  N  Q  K  L  A  K  F  F  F  H  G  H  Y  E  C  K  W  E  A  R  Y  T  R  F  E  A  K  V  N  K  I  M  F  S  W  R  S  *  I  R  Y  C  S  K  K  L  C  S  F  N  *  *  E  S  *  I  Y  V  C  N  L  I  S  E  M  G  I  M  K  S  E  I  Y  Q  L  L  H  F  L  N  Y  S  S  N  S  D  P   : K  K  R  R  K   </second_frame>
            <third_frame>   N  H  R  Q  L  E  S  Y  F  P  L  T  S  L  F  L  *  N  T  G  T  F  Y  R  D  N  R  Q  *  R  *  D  H  A  E  I  P  M  V  R  S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : D  K  V  P  W  C  E  I  N  H  I  K  S  K  Q  C  K  S  *  Y  F  C  *  T  W  *  *  D  L  L  W  *  Y  F  S  G   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  L  Q  R  V  H   : R  Q  L  S  G  R  G  D  A  I  Q  S  T  P  I  K  R  *   : G  N  I  Q  K  H  H  A  E :   F  E  F  V  I  S  K  N  D  G  R  R  S  S  S  *  H  G  L  W  I  T  R  D  K  I  R  S  L  L  N  S  S  F  M  V  T  T  N  V  N  G  K  Q  G  I  H  D  L  K  R  K  L  T  K  *  C  L  A  G  E  V  E  *  D  I  V  P  R  S  Y  V  V  L  T  D  K  N  L  E  Y  M  Y  V  T  *  F  L  R  W  E  *  *  K  V  K  F  I  S  C  C  I  F  *  I  I  V  A  I  Q  I  Q  :  K  K  E  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34693" stop="34421"/>
                    <exon start="32879" stop="32751"/>
                    <exon start="32624" stop="32517"/>
                    <exon start="31387" stop="31253"/>
                    <exon start="30584" stop="30543"/>
                    <exon start="30430" stop="30371"/>
                    <exon start="30288" stop="30235"/>
                    <exon start="29927" stop="29903"/>
                    <exon start="29822" stop="29731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHSSCKIREHFIEIIDSKDKIMLRFRWFEAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKTKFPGVKSIISKASNAKADIFVEPGDKIYFGDIFLEVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHDYKGFTVSSVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMMDVAVPANMVCGLQETKSEAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34609" e_stop="34421"/>
            <exon e_start="32879" e_stop="32751"/>
            <exon e_start="31387" e_stop="31253"/>
            <exon e_start="30584" e_stop="30543"/>
            <exon e_start="30430" e_stop="30371"/>
            <exon e_start="30288" e_stop="30235"/>
            <exon e_start="29927" e_stop="29903"/>
            <exon e_start="29822" e_stop="29512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34609" e_stop="34421" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34420" i_stop="32880" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32879" e_stop="32751" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="32750" i_stop="31388" i_length="1363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31387" e_stop="31253" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31252" i_stop="30585" i_length="668"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30584" e_stop="30543" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="30542" i_stop="30431" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30430" e_stop="30371" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30370" i_stop="30289" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30288" e_stop="30235" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="30234" i_stop="29928" i_length="307"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29927" e_stop="29903" e_length="25"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="29902" i_stop="29823" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29822" e_stop="29512" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34609" stop="34421"/>
              <exon start="32879" stop="32751"/>
              <exon start="31387" stop="31253"/>
              <exon start="30584" stop="30543"/>
              <exon start="30430" stop="30386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30564" stop="30543"/>
              <exon start="30430" stop="30371"/>
              <exon start="30288" stop="30235"/>
              <exon start="29927" stop="29903"/>
              <exon start="29822" stop="29512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC : GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG : GAAACATTCAAAAACATCATGCAGA : ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</gDNA_template>
            <first_frame> E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D  Y  K  G  F  T  :  V  S  S  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  M  D  V  A  V  P  A  N  M  V  C  G  L  Q  E  T  K  S  E  A  C  *  I  L  L  S  W  S  L  R  M  *  M  G  S  K  V  Y  T  I  *  S  E  S  *  Q  N  N  V  *  L  E  K  L  N  K  I  L  F  Q  E  A  M  *  F  *  L  I  R  I  L  N  I  C  M  *  L  D  F  *  D  G  N  N  E  K  *  N  L  S  V  A  A  F  S </first_frame>
            <second_frame>  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M  T  T  K  G  S  P :   S  A  Q  W  E  R  R  C  Y  T  I  H  A  Y  Q  K  I  R :   K  H  S  K  T  S  C  R  :  I  *  I  C  H  I  Q  K  *  W  T  S  Q  F  Q  L  T  W  F  V  D  Y  K  R  Q  N  Q  K  L  A  K  F  F  F  H  G  H  Y  E  C  K  W  E  A  R  Y  T  R  F  E  A  K  V  N  K  I  M  F  S  W  R  S  *  I  R  Y  C  S  K  K  L  C  S  F  N  *  *  E  S  *  I  Y  V  C  N  L  I  S  E  M  G  I  M  K  S  E  I  Y  Q  L  L  H  F   </second_frame>
            <third_frame>   S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  L  Q  R  V  H   : R  Q  L  S  G  R  G  D  A  I  Q  S  T  P  I  K  R  *   : G  N  I  Q  K  H  H  A  E :   F  E  F  V  I  S  K  N  D  G  R  R  S  S  S  *  H  G  L  W  I  T  R  D  K  I  R  S  L  L  N  S  S  F  M  V  T  T  N  V  N  G  K  Q  G  I  H  D  L  K  R  K  L  T  K  *  C  L  A  G  E  V  E  *  D  I  V  P  R  S  Y  V  V  L  T  D  K  N  L  E  Y  M  Y  V  T  *  F  L  R  W  E  *  *  K  V  K  F  I  S  C  C  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34609" stop="34421"/>
                    <exon start="32879" stop="32751"/>
                    <exon start="31387" stop="31253"/>
                    <exon start="30584" stop="30543"/>
                    <exon start="30430" stop="30371"/>
                    <exon start="30288" stop="30235"/>
                    <exon start="29927" stop="29903"/>
                    <exon start="29822" stop="29731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHDYKGFTVSSVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMMDVAVPANMVCGLQETKSEAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41457" PGL_stop="42999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41457" e_stop="41549"/>
            <exon e_start="41628" e_stop="41814"/>
            <exon e_start="41985" e_stop="42108"/>
            <exon e_start="42339" e_stop="42999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.957"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="41457" e_stop="41549" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41550" i_stop="41627" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41628" e_stop="41814" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="41815" i_stop="41984" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41985" e_stop="42108" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.530">
            <gDNA_intron_boundary i_start="42109" i_stop="42338" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42339" e_stop="42999" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41457" stop="41549"/>
              <exon start="41628" stop="41814"/>
              <exon start="41985" stop="42108"/>
              <exon start="42339" stop="42480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42103" stop="42108"/>
              <exon start="42339" stop="42901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42375" stop="42803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42446" stop="42999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42446" stop="42997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42449" stop="42958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42449" stop="42732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42487" stop="42960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG : GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG : AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG : GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</gDNA_template>
            <first_frame> K  T  G  F  Q  L  M  L  R  S  P  L  L  L  *  F  *  K  F  L  K  Q  L  T  *  S  H  Q  I  *  M  :  D  W  L  I  H  M  L  R  G  T  L  A  F  T  D  S  G  L  R  L  R  R  R  H  *  I  H  S  G  V  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  T  C  S  M  S  K  F  V  T  K  T  I  Y  M  M  I  H  W   : E  N  V  P  S  I  S  V  I  L  G  M  A  R  G  M  I  C  G  C  L  F  R  T  S  K  L  G  D  C  I  L  P  *  L  L  L  I  V  P  K  R :   A  R  S  S  H  M  I  A  E  V  W  S  M  N  R  I  A  N  L  L  R  W  I  K  L  N  K  A  P  *  P  L  N  Q  L  M  N  L  Q  K  L  E  I  S  M  N  L  L  I  L  K  G  S  G  R  L  V  Y  G  Y  T  N  Q  G  V  K  *  H  K  Y  G  N  Q  E  R  G  R  T  G  L  L  A  E  K  F  I  V  K  M  L  V  L  R  E  V  L  S  Q  H  Q  A  A  P  L  T  I  M  N  T  S  L  M  E  V  V  T  E  V  S  Q  I  L  Q  V  V  F  T  G  V  Y  I  R  S  A  R  S  S  G  E  V  Q  V  K  R  I  S  Q  A  I  L  E  S  L  I  Y  L  R  V  *  I  L  G  Q  L  M  P  R  I  *  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  H  L  Q  K  M  G  K  I  T  A  Q  E  M  G  K  T  P  Q  R  G  E  *  E  T  R  R  R  K  S  L  K  T  L  A  N </first_frame>
            <second_frame>  K  L  V  F  S  *  C  *  G  A  H  C  F  C  D  F  R  S  S  *  S  S  *  H  E  A  I  R  F  K  W :   I  G  *  S  I  C  *  G  A  H  W  P  L  Q  I  Q  D  *  D  *  E  E  D  I  E  S  T  V  A  *  G  V  Q  D  S  S  L  Y  M  G  V  S  *  Q  H  A  Q  C  R  S  S  *  Q  R  P  F  I  *  *  Y  I  G  :  K  M  F  H  Q  Y  L  *  F  *  G  W  P  E  A  *  Y  V  A  V  S  S  E  H  Q  N  W  E  I  A  S  C  H  N  C  C  *  L  C  Q  K   : G  R  G  A  V  I  *  *  R  K  Y  G  Q  *  T  G  *  Q  I  C  *  G  G  *  N  *  T  K  L  L  N  H  *  I  S  *  *  T  F  K  N  W  R  *  V  *  T  Y  *  Y  *  R  A  A  G  D  W  Y  M  G  T  P  T  R  E  *  S  S  T  S  M  G  T  K  K  G  E  E  Q  G  Y  W  R  R  S  S  *  *  K  C  W  F  *  G  K  S  *  V  N  I  R  R  L  L  S  L  *  *  I  Q  A  *  W  K  W  *  R  K  *  A  R  F  S  R  S  F  S  Q  G  F  T  *  D  Q  L  A  L  P  E  K  F  K  *  R  G  *  V  R  Q  S  W  R  A  *  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  R  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  N  N  T  Y  R  R  W  E  R  *  L  R  R  K  W  E  K  P  H  K  G  E  S  E  K  Q  D  E  E  N  P  *  K  R  W  Q   </second_frame>
            <third_frame>   N  W  F  S  A  D  A  K  E  P  I  A  F  V  I  L  E  V  L  E  A  A  D  M  K  P  S  D  L  N   : G  L  A  D  P  Y  V  K  G  H  I  G  L  Y  R  F  R  T  K  T  K  K  K  T  L  N  P  Q  W  R  E  E  F  K  I  P  V  C  T  W  E  S  P  N  N  M  L  N  V  E  V  R  D  K  D  H  L  Y  D  D  T  L  G :   K  C  S  I  N  I  C  D  F  R  D  G  Q  R  H  D  M  W  L  S  L  Q  N  I  K  I  G  R  L  H  L  A  I  T  V  V  D  C  A  K  K  :  G  A  E  Q  S  Y  D  S  G  S  M  V  N  E  Q  D  S  K  S  A  E  V  D  K  T  E  Q  S  S  L  T  T  E  S  V  D  E  P  S  K  T  G  D  K  Y  E  P  I  N  I  E  G  Q  R  E  T  G  I  W  V  H  Q  P  G  S  E  V  A  Q  V  W  E  P  R  K  G  K  N  R  V  I  G  G  E  V  H  S  E  N  A  G  S  K  G  S  L  K  S  T  S  G  G  S  S  H  Y  N  E  Y  K  L  D  G  S  G  N  G  S  K  P  D  S  P  G  R  F  H  R  G  L  H  K  I  S  S  L  F  R  R  S  S  S  K  E  D  K  S  G  N  L  G  E  P  D  L  S  P  R  V  N  L  R  A  V  N  A  K  D  I  G  V  K  I  I  V  D  D  T  I  L  P  S  S  L  T  T  P  T  E  D  G  K  D  N  C  A  G  N  G  K  N  P  T  K  G  R  V  R  N  K  T  K  K  I  L  K  N  A  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41459" stop="41549"/>
                    <exon start="41628" stop="41814"/>
                    <exon start="41985" stop="42108"/>
                    <exon start="42339" stop="42998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWFSADAKEPIAFVILEVLEAADMKPSDLNGLADPYVKGHIGLYRFRTKTKKKTLNPQWREEFKIPVCTWESPNNMLNVEVRDKDHLYDDTLGKCSINICDFRDGQRHDMWLSLQNIKIGRLHLAITVVDCAKKGAEQSYDSGSMVNEQDSKSAEVDKTEQSSLTTESVDEPSKTGDKYEPINIEGQRETGIWVHQPGSEVAQVWEPRKGKNRVIGGEVHSENAGSKGSLKSTSGGSSHYNEYKLDGSGNGSKPDSPGRFHRGLHKISSLFRRSSSKEDKSGNLGEPDLSPRVNLRAVNAKDIGVKIIVDDTILPSSLTTPTEDGKDNCAGNGKNPTKGRVRNKTKKILKNAGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43799" PGL_stop="45999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43799" e_stop="45999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43799" e_stop="45999" e_length="2201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43799" stop="44309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43814" stop="44352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43817" stop="44371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43822" stop="44629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43822" stop="44483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43822" stop="44412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43822" stop="44338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43825" stop="44471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43825" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43828" stop="44370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43828" stop="44315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43828" stop="44080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43831" stop="44648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43832" stop="44226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43835" stop="44503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43837" stop="44406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43855" stop="44405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43864" stop="44660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43888" stop="44409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43914" stop="44226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43933" stop="44667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44112" stop="44872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44135" stop="44905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44158" stop="44871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44160" stop="44660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44339" stop="45149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44353" stop="45233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44737" stop="45266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44750" stop="45631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44750" stop="45338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44750" stop="45322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44766" stop="45293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44827" stop="45298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44883" stop="45707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44885" stop="45627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44912" stop="45427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44966" stop="45652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44972" stop="45462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44972" stop="45436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44998" stop="45630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45028" stop="45889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45112" stop="45887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45204" stop="45962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45205" stop="45971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45205" stop="45889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45222" stop="45891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45370" stop="45909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45418" stop="45999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45489" stop="45788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45524" stop="45898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45552" stop="45898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45553" stop="45918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45557" stop="45918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45644" stop="45898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45648" stop="45898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCCCTCCTTTGAGTTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGACTAAGATTAATTACAAGTGAAGTAGTTAAGTTCGATAA</gDNA_template>
            <first_frame> W  P  S  F  E  F  S  S  S  T  T  M  A  A  A  S  P  S  P  C  F  S  K  T  L  P  P  S  S  S  K  S  S  T  L  L  P  K  S  T  F  T  F  H  N  H  P  K  K  A  S  P  L  H  L  T  H  T  Q  H  H  S  R  F  T  V  S  N  V  I  L  S  T  T  T  H  D  D  V  S  E  P  E  I  F  V  S  R  F  A  P  D  E  P  R  K  G  C  D  V  L  V  E  A  L  E  R  E  G  V  K  D  V  F  A  Y  P  G  G  A  S  M  E  I  H  Q  A  L  T  R  S  N  I  I  R  N  V  L  P  R  H  E  Q  G  G  V  F  A  A  E  G  Y  A  R  A  T  G  F  P  G  V  C  I  A  T  S  G  P  G  A  T  N  L  V  S  G  L  A  D  A  L  L  D  S  I  P  I  V  A  I  T  G  Q  V  P  R  R  M  I  G  T  D  A  F  Q  E  T  P  I  V  E  V  T  R  S  I  T  K  H  N  Y  L  V  M  D  V  E  D  I  P  R  V  V  R  E  A  F  F  L  A  K  S  G  R  P  G  P  V  L  I  D  V  P  K  D  I  Q  Q  Q  L  V  I  P  N  W  D  Q  P  M  R  L  P  G  Y  M  S  R  L  P  K  L  P  N  E  M  L  L  E  Q  I  V  R  L  I  S  E  S  K  K  P  V  L  Y  V  G  G  G  C  S  Q  S  S  E  E  L  R  R  F  V  E  L  T  G  I  P  V  A  S  T  L  M  G  L  G  A  F  P  S  G  D  E  L  S  L  Q  M  L  G  M  H  G  T  V  Y  A  N  Y  A  V  D  S  S  D  L  L  L  A  F  G  V  R  F  D  D  R  V  T  G  K  L  E  A  F  A  S  R  A  K  I  V  H  I  D  I  D  S  A  E  I  G  K  N  K  Q  P  H  V  S  I  C  A  D  I  K  L  A  L  Q  G  L  N  S  I  F  E  S  K  K  G  K  L  K  L  D  F  S  A  W  R  Q  E  L  T  E  Q  K  V  K  Y  P  L  N  F  K  T  F  G  E  A  I  P  P  Q  Y  A  I  Q  V  L  D  E  L  T  N  G  N  A  I  I  S  T  G  V  G  Q  H  Q  M  W  A  A  Q  H  Y  K  Y  K  K  P  R  Q  W  L  T  S  G  G  L  G  A  M  G  F  G  L  P  A  A  I  G  A  A  V  G  R  P  G  E  I  V  V  D  I  D  G  D  G  S  F  I  M  N  V  Q  E  L  A  T  I  K  V  E  N  L  P  V  K  I  M  L  L  N  N  Q  H  L  G  M  V  V  Q  W  E  D  R  F  Y  K  A  N  R  A  H  T  Y  L  G  N  P  A  N  E  E  E  I  F  P  N  M  L  K  F  A  E  A  C  G  V  P  A  A  R  V  S  H  R  D  D  L  R  A  A  I  Q  K  M  L  D  T  P  G  P  Y  L  L  D  V  I  V  P  H  Q  E  H  V  L  P  M  I  P  S  G  G  A  F  K  D  V  I  T  E  G  D  G  R  R  S  Y  *  L  *  E  A  T  *  L  V  Q  G  I  V  L  S  K  I  N  L  I  F  M  F  T  *  K  F  F  I  V  *  R  I  L  E  F  L  V  L  L  A  A  P  I  K  Y  L  E  L  Y  L  V  *  L  R  L  I  T  S  E  V  V  K  F  D   </first_frame>
            <second_frame>  G  P  P  L  S  L  A  P  Q  Q  Q  W  R  L  H  L  H  L  L  V  F  P  K  P  Y  L  H  L  H  Q  N  L  P  P  F  F  P  N  L  P  L  L  S  T  I  T  L  K  K  H  H  P  F  T  L  H  T  P  N  I  I  A  V  S  L  F  Q  M  S  S  Y  Q  P  R  R  M  T  T  F  L  N  P  K  S  L  F  P  V  S  P  L  T  N  P  E  R  V  V  M  F  L  W  R  H  L  K  G  K  G  L  R  M  C  L  H  T  Q  E  V  L  P  W  R  F  I  R  L  *  H  V  Q  I  L  F  V  M  C  C  H  V  M  N  R  V  V  C  L  L  Q  R  V  T  H  G  L  L  G  S  L  V  F  V  L  L  H  L  V  R  E  L  R  I  L  L  A  V  L  L  M  L  C  W  I  V  S  R  L  L  L  L  P  V  K  C  R  G  G  *  L  V  L  M  R  F  R  K  L  L  L  L  R  *  R  D  P  L  R  S  I  I  I  L  L  W  M  *  R  I  F  L  G  L  F  V  K  R  F  F  *  R  N  Q  D  G  L  D  L  F  *  L  M  F  L  R  I  F  S  N  N  W  *  Y  L  I  G  I  S  Q  *  G  C  L  V  T  C  L  G  C  L  N  Y  L  M  R  C  F  W  N  K  L  L  G  *  F  Q  S  Q  R  S  L  F  C  M  W  V  V  G  V  H  S  R  V  R  S  *  D  A  L  W  S  L  R  V  F  L  W  R  V  L  *  W  V  L  E  L  F  Q  V  G  M  S  F  L  F  K  C  W  V  C  M  G  L  C  M  L  I  M  R  W  I  V  V  I  C  C  L  H  L  G  *  G  L  M  I  E  L  L  V  N  W  K  L  L  L  A  E  L  R  L  S  I  L  I  L  I  R  L  R  L  E  R  T  S  N  L  M  F  P  S  V  Q  I  S  S  W  H  Y  R  V  *  I  P  Y  S  R  V  K  K  V  S  *  S  W  T  F  L  L  G  G  R  S  *  R  S  R  R  *  S  T  H  *  I  L  R  L  S  V  K  P  S  L  P  N  M  L  F  R  F  L  M  S  *  L  T  E  M  P  S  L  V  L  V  W  G  N  T  K  C  G  L  P  N  T  T  S  T  K  S  H  A  N  G  L  H  L  V  D  *  E  Q  W  D  L  V  C  L  L  L  *  V  R  L  L  E  D  R  V  R  L  W  L  I  L  M  V  M  G  V  L  S  *  M  C  R  S  W  Q  Q  L  R  W  R  I  S  Q  L  R  L  C  C  *  I  I  N  T  W  E  W  W  F  S  G  R  I  D  S  I  R  L  T  E  H  T  L  T  W  V  I  L  L  M  R  K  R  S  S  L  I  C  *  N  L  Q  R  L  V  A  Y  L  L  Q  E  C  H  T  G  M  I  L  E  L  P  F  K  R  C  *  T  L  L  G  H  T  C  W  M  *  L  Y  L  I  R  S  M  F  Y  R  *  F  P  V  A  V  L  S  K  M  *  L  R  R  V  M  G  D  V  P  I  D  F  E  K  L  H  N  *  F  K  A  L  Y  Y  L  K  *  T  *  Y  L  C  L  L  K  S  F  S  L  C  E  G  F  *  N  F  L  F  Y  W  Q  H  Q  L  S  I  W  S  S  I  *  Y  D  *  D  *  L  Q  V  K  *  L  S  S  I  </second_frame>
            <third_frame>   A  L  L  *  V  *  L  L  N  N  N  G  G  C  I  S  I  S  L  F  F  Q  N  P  T  S  I  F  I  K  I  F  H  P  S  S  Q  I  Y  L  Y  F  P  Q  S  P  *  K  S  I  T  P  S  P  Y  T  H  P  T  S  *  P  F  H  C  F  K  C  H  P  I  N  H  D  A  *  R  R  F  *  T  R  N  L  C  F  P  F  R  P  *  R  T  Q  K  G  L  *  C  S  C  G  G  T  *  K  G  R  G  *  G  C  V  C  I  P  R  R  C  F  H  G  D  S  S  G  F  D  T  F  K  Y  Y  S  *  C  A  A  T  S  *  T  G  W  C  V  C  C  R  G  L  R  T  G  Y  W  V  P  W  C  L  Y  C  Y  I  W  S  G  S  Y  E  S  C  *  R  S  C  *  C  F  V  G  *  Y  P  D  C  C  Y  Y  R  S  S  A  E  E  D  D  W  Y  *  C  V  S  G  N  S  Y  C  *  G  N  E  I  H  Y  E  A  *  L  S  C  Y  G  C  R  G  Y  S  *  G  C  S  *  S  V  F  S  S  E  I  R  T  A  W  T  C  F  D  *  C  S  *  G  Y  S  A  T  I  G  D  T  *  L  G  S  A  N  E  V  A  W  L  H  V  *  V  A  *  I  T  *  *  D  A  F  G  T  N  C  *  A  D  F  R  V  K  E  A  C  F  V  C  G  W  W  V  F  T  V  E  *  G  A  E  T  L  C  G  A  Y  G  Y  S  C  G  E  Y  F  D  G  S  W  S  F  S  K  W  G  *  A  F  S  S  N  V  G  Y  A  W  D  C  V  C  *  L  C  G  G  *  *  *  F  V  A  C  I  W  G  E  V  *  *  S  S  Y  W  *  I  G  S  F  C  *  P  S  *  D  C  P  Y  *  Y  *  F  G  *  D  W  K  E  Q  A  T  S  C  F  H  L  C  R  Y  Q  V  G  I  T  G  F  E  F  H  I  R  E  *  K  R  *  A  E  V  G  L  F  C  L  E  A  G  V  N  G  A  E  G  E  V  P  I  E  F  *  D  F  R  *  S  H  P  S  P  I  C  Y  S  G  S  *  *  V  N  *  R  K  C  H  H  *  Y  W  C  G  A  T  P  N  V  G  C  P  T  L  Q  V  Q  K  A  T  P  M  A  Y  I  W  W  I  R  S  N  G  I  W  F  A  C  C  Y  R  C  G  C  W  K  T  G  *  D  C  G  *  Y  *  W  *  W  E  F  Y  H  E  C  A  G  V  G  N  N  *  G  G  E  S  P  S  *  D  Y  V  A  E  *  S  T  L  G  N  G  G  S  V  G  G  S  I  L  *  G  *  Q  S  T  H  L  L  G  *  S  C  *  *  G  R  D  L  P  *  Y  A  E  I  C  R  G  L  W  R  T  C  C  K  S  V  T  Q  G  *  S  *  S  C  H  S  K  D  V  R  H  S  W  A  I  L  V  G  C  D  C  T  S  S  G  A  C  S  T  D  D  S  Q  W  R  C  F  Q  R  C  D  Y  G  G  *  W  E  T  F  L  L  T  L  R  S  Y  I  T  S  S  R  H  C  I  I  *  N  K  L  N  I  Y  V  Y  L  K  V  F  H  C  V  K  D  F  R  I  S  C  S  I  G  S  T  N  *  V  F  G  A  L  F  S  M  T  K  I  N  Y  K  *  S  S  *  V  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43799" stop="45805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2004</number_coding_nucleotides>
                  <number_encoded_amino_acids>668</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPSFEFSSSTTMAAASPSPCFSKTLPPSSSKSSTLLPKSTFTFHNHPKKASPLHLTHTQHHSRFTVSNVILSTTTHDDVSEPEIFVSRFAPDEPRKGCDVLVEALEREGVKDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPGPVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMGLGAFPSGDELSLQMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSIFESKKGKLKLDFSAWRQELTEQKVKYPLNFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQHYKYKKPRQWLTSGGLGAMGFGLPAAIGAAVGRPGEIVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPANEEEIFPNMLKFAEACGVPAARVSHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="46314" PGL_stop="46938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46314" e_stop="46938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="46314" e_stop="46938" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46314" stop="46906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46436" stop="46938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</gDNA_template>
            <first_frame> Y  L  L  I  H  C  K  C  W  F  K  P  E  L  P  R  G  F  P  R  S  F  T  Q  G  F  T  *  D  Q  L  S  S  P  E  K  F  *  Q  S  W  R  A  Y  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  Q  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  S  N  N  T  Y  R  R  W  K  R  E  R  C  R  K  W  E  K  F  H  K  W  G  K  T  K  R  I  L  K  D  A  G  K  S  V  G  G  G  I  K  E  V  M  S  G  K  S  S  G  K  S  K  E  E  V  E  S  S  E  T  E  R  M  S  S  V  E  S  D  I  S  D  A  E  S  Q  P  S  S  V  D  S  P  P  V  V  A  P  S  V  D  N  S  S  T  A  S  S  G  I  E  T  S  L  L  M  *  N  C  D  I  R  D  V  I  *  N  I  F  G  V  T  L  G  R  T  Y  F  S  V  L  T  N  </first_frame>
            <second_frame>  I  F  L  F  T  V  N  V  G  L  S  L  N  Y  L  G  D  S  P  G  R  L  H  R  G  L  H  K  I  S  S  V  L  R  R  S  S  S  N  L  G  E  P  I  S  S  L  H  V  N  L  R  A  V  N  A  K  D  I  R  V  K  I  I  V  D  D  T  I  L  P  S  S  L  A  T  T  P  T  E  D  G  K  E  N  G  A  G  N  G  K  S  F  T  N  G  A  R  R  R  E  S  L  K  M  L  A  N  L  L  V  V  A  *  R  K  *  C  L  G  S  H  Q  G  N  L  K  R  K  *  N  H  Q  R  P  K  E  *  A  L  W  N  L  I  F  L  M  Q  S  L  N  L  H  Q  L  I  H  L  Q  L  *  R  L  L  L  T  T  V  P  Q  P  A  P  V  L  R  L  L  S  *  C  R  I  V  I  Y  A  M  *  Y  K  T  Y  L  V  L  H  L  D  E  L  I  F  Q  F  *  P  T </second_frame>
            <third_frame>   S  S  Y  S  L  *  M  L  V  *  A  *  I  T  *  G  I  P  Q  V  V  Y  T  G  V  Y  I  R  S  A  Q  F  S  G  E  V  L  A  I  L  E  S  L  F  H  L  C  M  *  I  L  G  Q  L  M  P  R  I  S  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  Q  H  L  Q  K  M  E  K  R  T  V  Q  E  M  G  K  V  S  Q  M  G  Q  D  E  E  N  P  *  R  C  W  Q  I  C  W  W  W  H  K  G  S  D  V  W  E  V  I  R  E  I  *  R  G  S  R  I  I  R  D  R  K  N  E  L  C  G  I  *  Y  F  *  C  R  V  S  T  F  I  S  *  F  T  S  S  C  S  A  F  C  *  Q  Q  F  H  S  Q  L  R  Y  *  D  F  S  L  D  V  E  L  *  Y  T  R  C  N  I  K  H  I  W  C  Y  T  W  T  N  L  F  F  S  F  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46515" stop="46859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHFAFIISNNTYRRWKRERCRKWEKFHKWGKTKRILKDAGKSVGGGIKEVMSGKSSGKSKEEVESSETERMSSVESDISDAESQPSSVDSPPVVAPSVDNSSTASSGIETSLLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46315" stop="46656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFTVNVGLSLNYLGDSPGRLHRGLHKISSVLRRSSSNLGEPISSLHVNLRAVNAKDIRVKIIVDDTILPSSLATTPTEDGKENGAGNGKSFTNGARRRESLKMLANLLVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48757" PGL_stop="48169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48757" e_stop="48746"/>
            <exon e_start="48670" e_stop="48169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48757" e_stop="48746" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.925">
            <gDNA_intron_boundary i_start="48745" i_stop="48671" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48670" e_stop="48169" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48757" stop="48746"/>
              <exon start="48670" stop="48208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48624" stop="48169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACAGCCTG : ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</gDNA_template>
            <first_frame> F  N  S  L  :  I  S  V  V  T  I  Y  V  F  L  Y  G  Q  L  Y  M  V  L  S  G  L  Q  R  A  L  L  V  E  A  K  L  Q  N  I  K  S  L  E  T  A  L  A  S  Q  S  F  I  Q  L  G  L  L  T  G  L  P  M  V  I  E  L  G  L  E  R  G  Y  L  N  A  L  K  D  F  V  L  M  Q  L  Q  L  A  A  V  F  F  T  F  S  Y  G  T  K  S  H  Y  Y  G  R  T  I  L  H  G  G  A  K  Y  R  P  T  G  R  K  V  V  V  F  H  A  S  F  T  E  N  Y  R  L  Y  S  R  S  H  F  V  K  G  F  E  L  L  L  L  L  I  V  Y  D  L  F  R  R  S  Y  E  S  N  L  A  Y  V  L  T  T  Y  A  I  </first_frame>
            <second_frame>  S  T  A  * :   Y  Q  W  L  R  F  M  C  F  Y  T  V  S  S  T  W  Y  *  V  V  Y  K  E  H  Y  *  L  R  Q  N  Y  K  T  *  S  H  W  K  Q  L  *  L  L  N  H  L  S  S  L  D  F  *  Q  G  Y  Q  W  S  L  S  W  D  *  S  A  V  I  L  M  L  L  K  I  L  F  *  C  N  C  S  W  L  Q  F  S  L  L  S  P  M  E  Q  S  L  I  T  M  A  E  Q  F  F  M  E  V  L  S  I  D  L  L  V  V  K  L  W  F  F  M  P  A  S  L  K  T  I  D  F  T  L  G  V  T  S  S  K  D  L  N  F  Y  S  C  *  L  F  M  I  C  L  D  D  R  M  R  A  I  W  H  M  F  *  L  H  M  Q  Y </second_frame>
            <third_frame>   Q  Q  P   : D  I  S  G  Y  D  L  C  V  S  I  R  S  A  L  H  G  I  K  W  S  T  K  S  T  T  S  *  G  K  T  T  K  H  K  V  T  G  N  S  S  S  F  S  I  I  Y  P  A  W  T  F  N  R  V  T  N  G  H  *  V  G  T  R  A  R  L  S  *  C  S  *  R  F  C  S  D  A  T  A  A  G  C  S  F  L  Y  F  L  L  W  N  K  V  S  L  L  W  Q  N  N  S  S  W  R  C  *  V  *  T  Y  W  S  *  S  C  G  F  S  C  Q  L  H  *  K  L  *  T  L  L  S  E  S  L  R  Q  R  I  *  T  S  T  P  V  D  C  L  *  F  V  *  T  I  V  *  E  Q  F  G  I  C  F  N  Y  I  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48757" stop="48746"/>
                    <exon start="48670" stop="48170"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNSLISVVTIYVFLYGQLYMVLSGLQRALLVEAKLQNIKSLETALASQSFIQLGLLTGLPMVIELGLERGYLNALKDFVLMQLQLAAVFFTFSYGTKSHYYGRTILHGGAKYRPTGRKVVVFHASFTENYRLYSRSHFVKGFELLLLLIVYDLFRRSYESNLAYVLTTYAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69199" PGL_stop="67389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69199" e_stop="68318"/>
            <exon e_start="68244" e_stop="67957"/>
            <exon e_start="67410" e_stop="67390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="69199" e_stop="68318" e_length="882"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68244" e_stop="67957" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67956" i_stop="67411" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="0.810">
            <gDNA_exon_boundary e_start="67410" e_stop="67390" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69199" stop="68318"/>
              <exon start="68244" stop="67957"/>
              <exon start="67410" stop="67390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69184" stop="68591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69180" stop="68515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69175" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69173" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69172" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69171" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="68523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="68604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69098" stop="68646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68994" stop="68778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68622" stop="68318"/>
              <exon start="68244" stop="68024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68536" stop="68318"/>
              <exon start="68244" stop="68017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68533" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68532" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68501" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTA : AAGAACAAGAAAAATGAAAAA</gDNA_template>
            <first_frame> H  L  W  I  T  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P  L  P  S  L  E  *  F  T  L  D  F  R  S  A  L  I  A  T  L  S  S  *  F  L  *  *  E  *  L  V  Y  *  L  :  K  N  K  K  N  E  K </first_frame>
            <second_frame>  I  C  G  *  P  N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  Y  L  R  W  N  S  L  L  L  I  F  V  P  L  S  L  P  L  *  V  L  D  F  Y  D  K  S  D  *  F  T  N  * :   R  T  R  K  M  K   </second_frame>
            <third_frame>   F  V  D  N  P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I  T  F  V  G  I  V  Y  S  *  F  S  F  R  S  H  C  H  F  E  F  L  I  F  M  I  R  V  I  S  L  L  I   : K  E  Q  E  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69197" stop="68318"/>
                    <exon start="68244" stop="68207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVDNPIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69195" e_stop="68318"/>
            <exon e_start="68244" e_stop="68061"/>
            <exon e_start="67429" e_stop="67406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.412" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69195" e_stop="68318" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68244" e_stop="68061" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.412">
            <gDNA_intron_boundary i_start="68060" i_stop="67430" i_length="631"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="67429" e_stop="67406" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69184" stop="68591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69180" stop="68515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69175" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69173" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69172" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69171" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="68523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="68604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69098" stop="68646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68994" stop="68778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68542" stop="68318"/>
              <exon start="68244" stop="68061"/>
              <exon start="67429" stop="67406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68541" stop="68318"/>
              <exon start="68244" stop="68061"/>
              <exon start="67429" stop="67406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68539" stop="68318"/>
              <exon start="68244" stop="68061"/>
              <exon start="67429" stop="67406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68533" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68532" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68501" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT : GCTGTTTAAAAAGCAAAAGAAGAA</gDNA_template>
            <first_frame> C  G  *  P  N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  :  A  V  *  K  A  K  E  E </first_frame>
            <second_frame>  V  D  N  P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L :   L  F  K  K  Q  K  K   </second_frame>
            <third_frame>   W  I  T  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I   : C  C  L  K  S  K  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69194" stop="68318"/>
                    <exon start="68244" stop="68207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDNPIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="69195" e_stop="68318"/>
            <exon e_start="68244" e_stop="67965"/>
            <exon e_start="67429" e_stop="67389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.412" e_score="0.961"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69195" e_stop="68318" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="68244" e_stop="67965" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.412">
            <gDNA_intron_boundary i_start="67964" i_stop="67430" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.659">
            <gDNA_exon_boundary e_start="67429" e_stop="67389" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69184" stop="68591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69180" stop="68515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69175" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69173" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69172" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69171" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="68523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="68604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69098" stop="68646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68994" stop="68778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68622" stop="68318"/>
              <exon start="68244" stop="68024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68613" stop="68318"/>
              <exon start="68244" stop="67965"/>
              <exon start="67429" stop="67389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68536" stop="68318"/>
              <exon start="68244" stop="68017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68533" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68532" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68501" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTT : GCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAAT</gDNA_template>
            <first_frame> C  G  *  P  N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  Y  L  R  W  N  S  L  L  L  I  F  V  P  L  S  L  P  L  *  V  L  D  F  Y  D  K  S  D  *  F  :  A  V  *  K  A  K  E  E  Q  E  K  *  K   </first_frame>
            <second_frame>  V  D  N  P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I  T  F  V  G  I  V  Y  S  *  F  S  F  R  S  H  C  H  F  E  F  L  I  F  M  I  R  V  I  S  L :   L  F  K  K  Q  K  K  N  K  K  N  E  K  </second_frame>
            <third_frame>   W  I  T  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P  L  P  S  L  E  *  F  T  L  D  F  R  S  A  L  I  A  T  L  S  S  *  F  L  *  *  E  *  L  V   : C  C  L  K  S  K  R  R  T  R  K  M  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69194" stop="68318"/>
                    <exon start="68244" stop="68207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDNPIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="69195" e_stop="68318"/>
            <exon e_start="68244" e_stop="68055"/>
            <exon e_start="67407" e_stop="67390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69195" e_stop="68318" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="68317" i_stop="68245" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="68244" e_stop="68055" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68054" i_stop="67408" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="67407" e_stop="67390" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69187" stop="68350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69186" stop="68633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69184" stop="68591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69180" stop="68515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69175" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69174" stop="68779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69173" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69172" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69171" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="68523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="68604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69098" stop="68646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68994" stop="68778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68623" stop="68318"/>
              <exon start="68244" stop="68055"/>
              <exon start="67407" stop="67390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68533" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68532" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68501" stop="68318"/>
              <exon start="68244" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCAT : AACAAGAAAAATGAAAAA</gDNA_template>
            <first_frame> C  G  *  P  N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  :  N  K  K  N  E  K </first_frame>
            <second_frame>  V  D  N  P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I :   T  R  K  M  K   </second_frame>
            <third_frame>   W  I  T  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P   : *  Q  E  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69194" stop="68318"/>
                    <exon start="68244" stop="68207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDNPIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70127" PGL_stop="71194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70127" e_stop="70172"/>
            <exon e_start="70473" e_stop="71194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.000" e_score="0.478"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.478">
            <gDNA_exon_boundary e_start="70127" e_stop="70172" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70173" i_stop="70472" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="70473" e_stop="71194" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70127" stop="70172"/>
              <exon start="70473" stop="71194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545328" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACTCAACGCCCCTTTGCACGTTCATGGTCAGATATCATGAAT : GTCTTTAGTAAAAAGAATTTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</gDNA_template>
            <first_frame> *  D  S  T  P  L  C  T  F  M  V  R  Y  H  E   : C  L  *  *  K  E  F  I  L  I  W  D  L  Q  L  P  *  K  T  C  *  S  I  L  L  S  Q  *  L  S  I  S  T  P  S  S  L  I  R  D  F  R  F  E  S  F  R  V  Q  S  H  L  Y  E  E  T  M  N  P  S  I  L  M  R  I  Q  I  S  *  A  P  I  *  I  S  D  I  R  C  I  K  H  R  F  T  R  F  F  P  R  K  L  P  T  C  A  N  K  V  S  E  I  F  N  S  I  L  I  I  V  T  I  L  E  P  N  I  H  I  I  I  I  T  R  S  *  R  I  H  V  *  I  N  P  T  I  F  K  F  T  K  I  I  T  R  Q  I  S  *  I  L  Y  F  H  L  L  K  Q  N  *  I  I  C  I  N  T  R  N  N  I  L  Y  F  *  *  L  N  H  T  S  *  *  L  F  I  T  C  L  K  F  W  F  F  K  K  *  H  E  N  I  V  L  N  I  A  K  C  K  I  F  I  I  T  I  C  G  H  *  H  V  E  Y  E  I  K  E  K  L  K  N  *  K  I  F  L  E  K  I  S  F  N </first_frame>
            <second_frame>  K  T  Q  R  P  F  A  R  S  W  S  D  I  M  N  :  V  F  S  K  K  N  L  Y  *  Y  G  I  Y  N  C  H  E  K  R  V  N  Q  Y  S  Y  L  N  D  Y  L  *  V  L  L  H  P  *  L  E  I  S  D  L  N  L  S  E  Y  K  V  T  F  T  R  K  Q  *  I  P  Q  Y  *  C  E  S  R  L  V  E  L  Q  Y  E  Y  Q  T  S  G  A  *  S  I  D  S  Q  D  S  S  Q  E  N  S  L  H  A  P  T  K  L  V  K  S  S  T  P  F  *  S  *  *  Q  S  L  N  Q  I  F  I  S  S  S  S  L  G  V  E  E  S  M  S  E  S  I  Q  Q  Y  S  S  S  P  R  S  S  Q  D  K  L  V  E  F  S  T  F  I  C  S  N  K  I  E  S  F  V  L  T  L  G  T  I  F  S  T  S  N  D  S  I  T  L  L  N  N  S  S  S  L  A  S  N  S  G  S  S  R  N  D  M  K  T  S  F  S  I  L  L  S  A  R  F  S  L  L  Q  Y  V  A  I  D  M  L  N  M  R  *  K  R  S  *  K  I  E  R  F  F  W  R  R  L  A  L   </second_frame>
            <third_frame>   R  L  N  A  P  L  H  V  H  G  Q  I  S  *  M :   S  L  V  K  R  I  Y  T  N  M  G  F  T  I  A  M  K  N  V  L  I  N  T  P  I  S  M  T  I  Y  K  Y  S  F  I  L  N  *  R  F  Q  I  *  I  F  Q  S  T  K  S  P  L  R  G  N  N  E  S  L  N  T  N  A  N  P  D  *  L  S  S  N  M  N  I  R  H  Q  V  H  K  A  *  I  H  K  I  L  P  K  K  T  P  Y  M  R  Q  Q  S  *  *  N  L  Q  L  H  F  D  H  S  N  N  P  *  T  K  Y  S  Y  H  H  H  H  *  E  L  K  N  P  C  L  N  Q  S  N  N  I  Q  V  H  Q  D  H  H  K  T  N  *  L  N  S  L  L  S  F  A  Q  T  K  L  N  H  L  Y  *  H  *  E  Q  Y  S  L  L  L  M  T  Q  S  H  F  L  I  T  L  H  H  L  P  Q  I  L  V  L  Q  E  M  T  *  K  H  R  S  Q  Y  C  *  V  Q  D  F  H  Y  Y  N  M  W  P  L  T  C  *  I  *  D  K  R  E  V  E  K  L  K  D  F  F  G  E  D  *  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70803" stop="71144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLNQIFISSSSLGVEESMSESIQQYSSSPRSSQDKLVEFSTFICSNKIESFVLTLGTIFSTSNDSITLLNNSSSLASNSGSSRNDMKTSFSILLSARFSLLQYVAIDMLNMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="71221" PGL_stop="70476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71221" e_stop="70476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71221" e_stop="70476" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71221" stop="70665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71194" stop="70476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71193" stop="70657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</gDNA_template>
            <first_frame> F  F  S  S  N  F  L  L  S  I  K  A  N  L  L  Q  K  N  L  S  I  F  Q  L  L  F  Y  L  I  F  N  M  S  M  A  T  Y  C  N  N  E  N  L  A  L  S  N  I  E  N  D  V  F  M  S  F  L  E  E  P  E  F  E  A  S  D  E  E  L  L  R  S  V  I  E  S  L  E  V  E  N  I  V  P  S  V  N  T  N  D  S  I  L  F  E  Q  M  K  V  E  N  S  T  N  L  S  C  D  D  L  G  E  L  E  Y  C  W  I  D  S  D  M  D  S  S  T  P  S  D  D  D  D  M  N  I  W  F  K  D  C  Y  Y  D  Q  N  G  V  E  D  F  T  N  F  V  G  A  C  R  E  F  S  W  E  E  S  C  E  S  M  L  Y  A  P  D  V  *  Y  S  Y  W  S  S  T  N  L  D  S  H  *  Y  *  G  I  H  C  F  L  V  K  V  T  L  Y  S  E  R  F  K  S  E  I  S  N  *  G  *  R  S  T  Y  R  *  S  L  R  *  E  Y  *  L  T  R  F  S  W  Q  L  *  I  P  Y  *  Y  K  F  F  L  L   </first_frame>
            <second_frame>  F  F  P  L  I  F  C  Y  Q  L  K  L  I  F  S  K  K  I  F  Q  F  F  N  F  S  F  I  S  Y  S  T  C  Q  W  P  H  I  V  I  M  K  I  L  H  L  A  I  L  R  T  M  F  S  C  H  F  L  K  N  Q  N  L  R  Q  V  M  K  S  Y  *  E  V  *  L  S  H  *  K  *  R  I  L  F  L  V  L  I  Q  M  I  Q  F  C  L  S  K  *  K  *  R  I  Q  L  I  C  L  V  M  I  L  V  N  L  N  I  V  G  L  I  Q  T  W  I  L  Q  L  L  V  M  M  M  I  *  I  F  G  S  R  I  V  T  M  I  K  M  E  L  K  I  S  L  T  L  L  A  H  V  G  S  F  L  G  K  N  L  V  N  L  C  F  M  H  L  M  S  D  I  H  I  G  A  Q  L  I  W  I  R  I  S  I  E  G  F  I  V  S  S  *  R  *  L  C  T  L  K  D  S  N  L  K  S  L  I  K  D  E  G  V  L  I  D  S  H  *  D  R  S  I  D  *  H  V  F  H  G  N  C  K  S  H  I  S  I  N  S  F  Y  *  </second_frame>
            <third_frame>   F  F  L  *  F  F  V  I  N  *  S  *  S  S  P  K  K  S  F  N  F  S  T  S  L  L  S  H  I  Q  H  V  N  G  H  I  L  *  *  *  K  S  C  T  *  Q  Y  *  E  R  C  F  H  V  I  S  *  R  T  R  I  *  G  K  *  *  R  V  I  K  K  C  D  *  V  I  R  S  R  E  Y  C  S  *  C  *  Y  K  *  F  N  F  V  *  A  N  E  S  R  E  F  N  *  F  V  L  *  *  S  W  *  T  *  I  L  L  D  *  F  R  H  G  F  F  N  S  *  *  *  *  *  Y  E  Y  L  V  Q  G  L  L  L  *  S  K  W  S  *  R  F  H  *  L  C  W  R  M  *  G  V  F  L  G  R  I  L  *  I  Y  A  L  C  T  *  C  L  I  F  I  L  E  L  N  *  S  G  F  A  L  V  L  R  D  S  L  F  P  R  K  G  D  F  V  L  *  K  I  Q  I  *  N  L  *  L  R  M  K  E  Y  L  *  I  V  I  E  I  G  V  L  I  N  T  F  F  M  A  I  V  N  P  I  L  V  *  I  L  F  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71221" stop="70694"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSSNFLLSIKANLLQKNLSIFQLLFYLIFNMSMATYCNNENLALSNIENDVFMSFLEEPEFEASDEELLRSVIESLEVENIVPSVNTNDSILFEQMKVENSTNLSCDDLGELEYCWIDSDMDSSTPSDDDDMNIWFKDCYYDQNGVEDFTNFVGACREFSWEESCESMLYAPDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90797" PGL_stop="89918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90797" e_stop="89918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="90797" e_stop="89918" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90797" stop="89918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACAACCCCTCCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCCTTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</gDNA_template>
            <first_frame> L  F  S  N  L  L  P  L  F  I  T  H  L  A  H  I  L  L  N  K  M  V  L  P  N  V  N  T  V  T  S  L  K  P  S  S  L  F  F  M  S  L  I  S  L  H  L  S  G  S  R  R  W  P  L  P  T  I  S  S  T  A  C  S  H  P  P  S  L  T  H  L  P  M  N  F  Y  T  H  T  V  Q  I  T  L  I  F  D  H  L  V  V  L  P  I  L  G  Y  A  L  T  L  N  T  N  F  N  P  G  L  H  H  A  S  F  *  A  T  I  P  P  *  K  D  T  N  V  L  N  S  S  L  K  K  H  M  S  L  V  M  F  F  L  S  R  R  I  F  P  I  P  G  *  A  L  S  M  P  R  P  T  H  L  V  L  F  Q  S  F  H  R  A  H  M  A  L  Y  R  H  P  L  P  H  P  S  Y  T  H  H  P  I  P  T  L  S  S  H  P  D  H  P  P  P  P  I  H  P  S  H  Q  L  S  I  L  L  T  N  N  L  H  Q  P  K  Q  P  L  L  H  P  H  P  L  Y  I  I  C  K  P  V  P  N  P  T  F  S  S  P  K  S  T  P  P  L  H  L  L  P  L  P  L  N  L  L  P  I  N  K  H  L  P  T  P  F  G  V  R  L  W  M  M  N  T  G  L  L  L  I  S  I  L  G  N  W  </first_frame>
            <second_frame>  F  S  P  I  S  C  H  C  S  S  H  I  L  P  I  Y  S  *  T  K  W  C  C  R  T  *  T  P  S  P  H  *  N  R  R  H  S  S  S  *  V  S  S  P  C  T  F  L  G  R  G  V  G  H  C  Q  L  S  H  Q  P  H  A  H  T  L  P  L  *  H  I  S  L  *  I  S  I  H  T  P  S  R  L  H  S  S  S  T  I  W  L  S  C  L  S  L  A  T  P  S  H  S  T  Q  T  S  T  P  V  Y  T  M  H  L  S  R  L  P  S  H  H  K  R  I  Q  M  F  *  T  H  L  S  K  N  I  C  L  S  S  C  S  F  Y  R  G  G  F  S  L  S  P  V  K  L  C  Q  C  H  V  Q  P  T  W  S  Y  S  N  L  S  T  E  L  T  W  P  Y  T  G  I  H  Y  P  I  H  H  T  H  T  T  Q  S  Q  P  S  H  P  I  R  I  T  H  H  P  Q  S  T  H  P  T  N  F  Q  S  S  L  P  T  I  S  T  S  R  N  N  P  S  S  T  P  T  P  F  T  S  Y  A  N  P  F  Q  I  R  H  F  Q  A  Q  S  L  H  H  H  F  T  C  S  L  S  L  *  T  Y  Y  L  *  T  S  I  Y  Q  P  P  L  V  S  G  Y  G  *  *  I  Q  V  S  Y  *  S  A  Y  L  G  I  G </second_frame>
            <third_frame>   F  L  Q  S  L  A  I  V  H  H  T  S  C  P  Y  T  L  E  Q  N  G  V  A  E  R  K  H  R  H  L  I  E  T  V  V  T  L  L  H  E  S  H  L  P  A  P  F  W  V  E  A  L  A  T  A  N  Y  L  I  N  R  M  L  T  P  S  L  S  N  T  S  P  Y  E  F  L  Y  T  H  R  P  D  Y  T  H  L  R  P  F  G  C  L  A  Y  P  W  L  R  P  H  T  Q  H  K  L  Q  P  R  S  T  P  C  I  F  L  G  Y  H  P  T  I  K  G  Y  K  C  F  E  L  I  S  Q  K  T  Y  V  S  R  H  V  L  F  I  E  E  D  F  P  Y  P  R  L  S  S  V  N  A  T  S  N  P  L  G  L  I  P  I  F  P  P  S  S  H  G  L  I  P  A  S  I  T  P  S  I  I  H  T  P  P  N  P  N  P  L  I  P  S  G  S  P  T  T  P  N  P  P  I  P  P  T  F  N  P  P  Y  Q  Q  S  P  P  A  E  T  T  P  P  P  P  P  P  P  L  H  H  M  Q  T  R  S  K  S  D  I  F  K  P  K  V  Y  T  T  T  S  L  A  P  S  P  S  E  P  T  T  Y  K  Q  A  S  T  N  P  L  W  C  Q  A  M  D  D  E  Y  R  S  L  I  N  Q  H  T  W  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90795" stop="89920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQSLAIVHHTSCPYTLEQNGVAERKHRHLIETVVTLLHESHLPAPFWVEALATANYLINRMLTPSLSNTSPYEFLYTHRPDYTHLRPFGCLAYPWLRPHTQHKLQPRSTPCIFLGYHPTIKGYKCFELISQKTYVSRHVLFIEEDFPYPRLSSVNATSNPLGLIPIFPPSSHGLIPASITPSIIHTPPNPNPLIPSGSPTTPNPPIPPTFNPPYQQSPPAETTPPPPPPPLHHMQTRSKSDIFKPKVYTTTSLAPSPSEPTTYKQASTNPLWCQAMDDEYRSLINQHTWEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="94099" PGL_stop="92898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94099" e_stop="93906"/>
            <exon e_start="93756" e_stop="93250"/>
            <exon e_start="92938" e_stop="92898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94099" e_stop="93906" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="93905" i_stop="93757" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93756" e_stop="93250" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93249" i_stop="92939" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="0.659">
            <gDNA_exon_boundary e_start="92938" e_stop="92898" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94099" stop="93906"/>
              <exon start="93756" stop="93250"/>
              <exon start="92938" stop="92898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG : GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTTGTTTATTTAA : AACATCAAAACAAACAAAAAAAAAATTCTCGGCTGCCTCTC</gDNA_template>
            <first_frame> F  F  L  C  Y  Y  *  T  S  Y  N  W  L  A  A  N  F  S  F  K  V  T  L  L  C  R  R  D  T  Y  P  S  Y  P  L  Q  L  L  I  *  T  I  R  *  P  N  Y  W  L  *  V  P  S  W  M  A  P  S  N  M  K  S  M  E  R :   F  C  C  F  E  V  C  G  W  T  Y  V  R  S  L  S  A  V  L  R  H  P  R  N  N  H  L  Q  V  K  V  I  T  T  S  V  T  R  Q  I  G  F  S  A  *  I  L  H  S  G  V  L  L  K  E  R  I  D  S  C  T  W  R  *  S  T  Y  R  E  C  Y  S  K  K  Q  S  I  Q  *  L  N  S  Y  C  I  C  F  *  C  S  V  L  V  I  L  L  C  N  M  M  F  C  I  H  Q  H  E  L  W  C  S  T  L  N  Q  R  T  R  I  R  A  S  G  M  E  K  I  L  L  R  K  P  L  L  N  R  S  C  T  V  R  F  G  F  N  R  S  S  N  V  G  S  *  H  W  M  G  K  P  K  K  K  T  *  C  C  L  F  K :   T  S  K  Q  T  K  K  K  F  S  A  A  S  </first_frame>
            <second_frame>  F  F  Y  V  I  I  E  R  H  T  T  G  *  L  L  T  L  V  S  K  *  H  C  C  A  E  G  I  L  I  P  P  I  L  Y  S  C  *  Y  K  Q  F  G  D  Q  T  I  G  F  R  C  R  V  G  W  P  H  Q  I  *  N  P  W  K   : G  F  A  A  L  R  C  V  D  G  H  M  L  G  L  Y  Q  P  S  *  G  I  L  E  T  T  T  C  R  *  K  *  S  R  L  L  *  Q  G  K  L  V  S  Q  H  R  F  C  I  R  V  Y  C  *  K  R  E  S  T  L  V  H  G  G  E  A  H  I  G  S  V  T  A  R  N  N  Q  Y  S  S  *  I  P  T  V  F  V  F  D  V  L  F  W  L  S  F  C  V  T  *  C  F  V  F  T  N  M  N  C  G  A  P  P  L  T  R  G  L  G  F  E  L  P  V  W  R  K  F  C  *  E  S  H  S  *  I  G  H  A  L  Y  D  L  D  S  I  G  A  P  T  W  A  P  D  T  G  W  E  N  Q  K  K  K  H  D  V  V  Y  L   : K  H  Q  N  K  Q  K  K  N  S  R  L  P  L </second_frame>
            <third_frame>   F  F  M  L  L  L  N  V  I  Q  L  V  S  C  *  L  *  F  Q  S  D  I  V  V  Q  K  G  Y  L  S  L  L  S  F  T  V  V  D  I  N  N  S  V  T  K  L  L  A  L  G  A  E  L  D  G  P  I  K  Y  E  I  H  G  K  :  V  L  L  L  *  G  V  W  M  D  I  C  *  V  F  I  S  R  P  K  A  S  S  K  Q  P  L  A  G  K  S  N  H  D  F  C  N  K  A  N  W  F  L  S  I  D  F  A  F  G  C  T  V  E  R  E  N  R  L  L  Y  M  E  V  K  H  I  *  G  V  L  Q  Q  E  T  I  N  T  V  A  E  F  L  L  Y  L  F  L  M  F  C  S  G  Y  P  F  V  *  H  D  V  L  Y  S  P  T  *  I  V  V  L  H  P  *  P  E  D  S  D  S  S  F  R  Y  G  E  N  F  V  E  K  A  T  L  E  *  V  M  H  C  T  I  W  I  Q  S  E  L  Q  R  G  L  L  T  L  D  G  K  T  K  K  K  N  M  M  L  F  I  *  :  N  I  K  T  N  K  K  K  I  L  G  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93491" stop="93297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVLVILLCNMMFCIHQHELWCSTLNQRTRIRASGMEKILLRKPLLNRSCTVRFGFNRSSNVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="95072" PGL_stop="94291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95072" e_stop="94291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="95072" e_stop="94291" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95072" stop="94291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95071" stop="94464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</gDNA_template>
            <first_frame> E  T  V  I  G  G  A  D  T  V  R  E  G  C  C  W  G  G  G  I  D  G  G  G  G  C  G  G  C  G  G  G  *  L  K  F  L  N  N  Y  T  L  D  I  K  F  D  C  *  R  R  K  R  V  I  L  C  V  Y  *  V  A  D  Y  V  C  Y  T  K  H  L  *  I  K  K  *  T  S  Q  F  K  Y  *  S  I  *  T  S  L  I  *  N  V  M  V  Q  K  D  V  L  K  F  S  I  W  V  L  V  L  G  T  L  M  F  F  Y  L  K  V  K  *  F  L  R  I  S  G  Y  F  D  *  *  Q  R  V  A  R  T  V  N  I  K  L  D  T  C  G  L  S  N  R  R  Y  I  L  D  H  I  L  E  L  *  R  V  F  R  K  S  R  K  M  Y  H  I  H  T  S  *  S  V  R  T  F  *  P  F  *  C  N  Y  E  P  S  S  V  C  T  K  A  V  S  L  H  T  R  M  I  C  C  L  K  E  L  V  L  I  K  L  R  S  S  C  Y  K  P  Y  L  L  L  H  H  L  A  S  P  R  C  A  A  *  C  R  V  L  F  C  L  L  *  G  Y  M  V  S  L  A  S  C  P  S   </first_frame>
            <second_frame>  R  Q  *  L  V  A  L  I  R  L  G  R  V  V  V  G  V  V  A  L  M  A  E  V  V  A  V  D  V  E  V  V  D  L  S  F  *  I  I  I  H  *  T  *  S  S  I  V  K  G  E  N  V  *  F  Y  V  F  I  K  L  P  I  T  Y  V  T  Q  N  T  Y  E  L  K  N  E  P  H  N  S  S  T  R  V  F  K  H  L  *  S  K  M  L  W  F  R  K  M  C  *  S  S  Q  F  G  F  W  C  W  V  L  *  C  F  F  T  *  K  L  S  D  F  *  E  F  Q  D  I  L  I  D  N  R  E  L  L  G  R  *  I  L  S  W  I  L  V  D  Y  Q  I  E  D  T  S  W  I  I  F  L  S  C  N  E  C  S  E  S  L  G  K  C  T  T  S  I  R  A  E  V  L  E  H  F  S  P  F  S  A  T  M  S  H  L  V  Y  V  L  R  L  F  H  C  I  Q  G  *  F  V  V  *  K  S  *  Y  L  S  S  *  G  R  A  V  I  N  L  T  C  Y  C  I  T  S  P  V  L  D  V  L  L  S  V  E  F  C  F  V  C  F  E  D  I  W  *  A  *  L  H  A  L  R  </second_frame>
            <third_frame>   D  S  D  W  W  R  *  Y  G  *  G  G  L  L  L  G  W  W  H  *  W  R  R  W  L  R  W  M  W  R  W  L  T  *  V  S  K  *  L  Y  I  R  H  K  V  R  L  L  K  E  K  T  C  N  F  M  C  L  L  S  C  R  L  R  M  L  H  K  T  P  M  N  *  K  M  N  L  T  I  Q  V  L  E  Y  L  N  I  S  N  L  K  C  Y  G  S  E  R  C  V  E  V  L  N  L  G  F  G  A  G  Y  F  N  V  F  L  L  K  S  *  V  I  F  K  N  F  R  I  F  *  L  I  T  E  S  C  S  D  G  K  Y  *  A  G  Y  L  W  I  I  K  *  K  I  H  L  G  S  Y  S  *  A  V  T  S  V  Q  K  V  *  E  N  V  P  H  P  Y  E  L  K  C  *  N  I  L  A  L  L  V  Q  L  *  A  I  *  C  M  Y  *  G  C  F  I  A  Y  K  D  D  L  L  F  E  R  V  S  T  Y  Q  A  K  V  E  L  L  *  T  L  P  V  T  A  S  P  R  Q  S  *  M  C  C  L  V  *  S  S  V  L  F  A  L  R  I  Y  G  K  P  S  F  M  P  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94654" stop="94454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSWILVDYQIEDTSWIIFLSCNECSESLGKCTTSIRAEVLEHFSPFSATMSHLVYVLRLFHCIQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="114931" PGL_stop="115738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114931" e_stop="115186"/>
            <exon e_start="115283" e_stop="115738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114931" e_stop="115186" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115187" i_stop="115282" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="115283" e_stop="115738" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114931" stop="115186"/>
              <exon start="115283" stop="115738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114933" stop="115186"/>
              <exon start="115283" stop="115454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114934" stop="115186"/>
              <exon start="115283" stop="115695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG : GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</gDNA_template>
            <first_frame> E  R  N  T  H  *  *  K  *  I  L  *  *  S  S  C  C  F  F  S  S  L  F  P  M  D  I  Q  Q  N  *  I  H  I  L  Q  L  V  K  K  L  N  A  Q  I  M  M  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  N  Q  L  M  I  R  H  L  F  P  P  P  E  S  V  S  P   : G  Y  L  C  I  F  K  E  R  T  I  S  M  R  K  W  I  *  Q  H  Q  L  *  H  K  L  S  Q  V  M  D  H  Y  V  P  P  H  L  L  *  V  L  T  Y  Q  R  R  I  S  Q  I  L  L  Q  L  K  A  Y  I  P  K  N  G  T  K  V  V  M  P  R  S  G  N  S  V  D  L  L  R  M  V  I  F  R  N  K  L  L  P  L  L  P  A  S  L  T  L  N  G  Q  Q  L  S  K  K  A  G  V  K  I  I  V  R  F  I  Q  L  H  N  T  T  L  P  L  S  S  G  L  E  S  M  R  C  G  L  L  L  L  W  T  L  Q  L  T  F  E  R  Q  Q  S  L  L  </first_frame>
            <second_frame>  K  E  I  L  T  S  K  N  E  F  F  D  D  Q  V  V  V  F  S  R  P  Y  F  Q  W  I  F  N  K  I  R  F  I  S  S  N  L  *  K  N  *  M  P  K  L  *  C  D  *  I  W  K  R  L  *  N  S  S  L  Q  F  P  Y  V  D  V  Y  *  T  N  *  *  Y  V  I  C  F  R  H  P  N  R  F  H  Q  :  V  I  Y  V  Y  S  R  K  E  R  S  A  *  E  N  G  Y  D  S  T  S  Y  D  T  S  *  A  K  *  W  T  I  M  F  H  L  I  C  C  E  F  *  R  T  K  E  E  S  A  K  S  S  F  S  *  R  P  T  S  P  K  M  E  P  K  *  L  C  R  G  Q  A  I  Q  W  I  C  Y  G  W  *  Y  S  E  T  S  C  C  P  Y  C  Q  H  R  *  H  *  M  G  S  S  Y  R  K  K  Q  E  *  R  *  *  Y  D  L  Y  S  C  T  I  Q  L  S  L  *  V  Q  G  *  S  Q  *  D  V  V  Y  F  C  Y  G  H  C  N  *  H  L  R  G  N  K  V  Y  Y </second_frame>
            <third_frame>   K  K  Y  S  L  V  K  M  N  S  L  M  I  K  L  L  F  F  L  V  L  I  S  N  G  Y  S  T  K  L  D  S  Y  P  P  T  C  K  K  I  E  C  P  N  Y  D  V  I  E  S  G  K  D  Y  E  I  R  R  Y  N  S  P  M  W  M  S  T  E  P  I  D  D  T  S  F  V  S  A  T  R  I  G  F  T  R :   L  F  M  Y  I  Q  G  K  N  D  Q  H  E  K  M  D  M  T  A  P  V  M  T  Q  V  K  P  S  D  G  P  L  C  S  T  S  F  V  V  S  F  N  V  P  K  K  N  Q  P  N  P  P  S  A  E  G  L  H  P  Q  K  W  N  Q  S  S  Y  A  A  V  R  Q  F  S  G  F  V  T  D  G  D  I  P  K  Q  A  A  A  L  T  A  S  I  A  D  T  K  W  A  A  A  I  E  K  S  R  S  K  D  N  S  T  I  Y  T  V  A  Q  Y  N  S  P  F  E  F  R  A  R  V  N  E  M  W  F  T  F  V  M  D  T  A  I  D  I  *  E  A  T  K  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114933" stop="115186"/>
                    <exon start="115283" stop="115718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLVKMNSLMIKLLFFLVLISNGYSTKLDSYPPTCKKIECPNYDVIESGKDYEIRRYNSPMWMSTEPIDDTSFVSATRIGFTRLFMYIQGKNDQHEKMDMTAPVMTQVKPSDGPLCSTSFVVSFNVPKKNQPNPPSAEGLHPQKWNQSSYAAVRQFSGFVTDGDIPKQAAALTASIADTKWAAAIEKSRSKDNSTIYTVAQYNSPFEFRARVNEMWFTFVMDTAIDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="118068" PGL_stop="119038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118068" e_stop="118368"/>
            <exon e_start="118457" e_stop="119038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="118068" e_stop="118368" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="118369" i_stop="118456" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="118457" e_stop="119038" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118068" stop="118368"/>
              <exon start="118457" stop="119013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118085" stop="118368"/>
              <exon start="118457" stop="118914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118087" stop="118368"/>
              <exon start="118457" stop="118910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118098" stop="118368"/>
              <exon start="118457" stop="119005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118102" stop="118368"/>
              <exon start="118457" stop="118592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118103" stop="118368"/>
              <exon start="118457" stop="118996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118106" stop="118368"/>
              <exon start="118457" stop="119038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118108" stop="118368"/>
              <exon start="118457" stop="118558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118152" stop="118368"/>
              <exon start="118457" stop="118973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118153" stop="118368"/>
              <exon start="118457" stop="118877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118241" stop="118368"/>
              <exon start="118457" stop="119037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118630" stop="118999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTG</gDNA_template>
            <first_frame> Q  N  F  I  E  T  N  *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I  L  Q  I  R  *  I  V  *  Y  N  L  I  L  R  V  W  W  L  K  H  L  C  </first_frame>
            <second_frame>  K  I  S  L  R  Q  I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  F  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  C  K  *  D  R  L  C  N  T  I  *  F  *  E  F  G  G  *  N  T  S  V </second_frame>
            <third_frame>   K  F  H  *  D  K  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  S  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I  A  N  K  I  D  C  V  I  Q  S  D  S  E  S  L  V  V  K  T  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118082" stop="118368"/>
                    <exon start="118457" stop="118889"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKLKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="120093" PGL_stop="119264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120093" e_stop="119264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="120093" e_stop="119264" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120093" stop="119465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120093" stop="119480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120093" stop="119625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120048" stop="119761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119983" stop="119308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119866" stop="119593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119848" stop="119264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119762" stop="119327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119631" stop="119345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</gDNA_template>
            <first_frame> E  D  *  P  K  T  S  S  W  N  C  Q  A  L  P  T  K  I  D  K  D  F  *  A  R  A  D  K  S  G  A  S  L  C  W  C  G  S  L  Y  E  S  *  A  R  N  E  Q  *  H  N  *  L  H  L  R  W  T  R  Q  E  R  *  *  K  *  T  A  G  C  G  N  L  Y  *  V  N  D  C  R  V  L  *  C  Y  I  K  *  L  V  P  L  Y  K  L  R  *  S  I  I  Y  Y  *  E  Y  Q  I  L  F  *  Y  C  *  L  W  R  C  K  R  C  *  S  V  L  F  H  H  Q  Q  L  M  W  I  R  L  F  I  *  Q  N  S  G  V  *  Y  V  F  K  *  *  T  A  Y  K  I  L  F  R  K  *  G  F  C  F  G  F  N  C  W  D  *  H  T  E  T  G  Y  C  S  L  F  *  R  F  S  *  *  *  *  *  P  C  T  C  R  I  W  *  *  A  *  I  *  T  N  L  L  S  I  *  C  V  V  S  *  N  S  K  S  L  Y  V  E  L  A  R  Y  K  L  C  F  C  F  A  N  Q  Y  F  I  E  W  K  H  I  N  H  F  L  V  Q  W  N  N  W  S  F  F  V  I  L  Q  L  *  I  C  L  L  *  L  I  I  L  I  L  Y  N   </first_frame>
            <second_frame>  K  I  S  R  R  Q  V  P  G  I  V  K  H  C  P  P  K  S  T  K  T  S  R  P  E  Q  T  K  A  E  H  L  Y  V  G  V  D  P  Y  M  N  H  R  P  E  M  N  S  D  I  I  D  C  T  S  G  G  L  V  K  N  A  N  R  N  R  P  P  V  V  G  T  Y  T  E  S  M  T  A  E  F  S  D  A  T  S  S  D  W  S  L  F  T  S  S  D  E  A  S  F  T  T  E  S  T  R  Y  S  F  S  T  V  D  Y  G  D  A  N  A  A  D  P  F  S  S  I  I  N  S  L  C  G  S  D  Y  S  S  N  R  T  V  A  C  S  M  F  S  S  S  K  P  H  T  R  F  F  S  E  S  K  G  S  V  L  D  S  T  A  G  T  S  I  P  R  Q  V  T  V  P  Y  S  E  G  F  H  S  D  S  S  N  H  V  H  V  E  Y  G  S  E  P  R  Y  E  Q  T  Y  Y  P  Y  N  V  *  F  L  E  I  P  N  H  Y  M  S  N  *  L  G  T  S  C  A  S  V  L  L  I  N  I  L  L  N  G  S  T  S  I  I  F  *  F  N  G  T  T  G  H  F  L  L  F  C  S  C  K  Y  A  C  C  S  *  L  S  *  F  F  T  I  </second_frame>
            <third_frame>   R  L  A  E  D  K  F  L  E  L  S  S  T  A  H  Q  N  R  Q  R  L  L  G  Q  S  R  Q  K  R  S  I  F  M  L  V  W  I  L  I  *  I  I  G  Q  K  *  T  V  T  *  L  I  A  P  P  V  D  S  S  R  T  L  I  E  I  D  R  R  L  W  E  P  I  L  S  Q  *  L  Q  S  S  L  M  L  H  Q  V  I  G  P  S  L  Q  A  Q  M  K  H  H  L  L  L  R  V  P  D  T  L  L  V  L  L  T  M  E  M  Q  T  L  L  I  R  S  L  P  S  S  T  A  Y  V  D  Q  I  I  H  L  T  E  Q  W  R  V  V  C  F  Q  V  V  N  R  I  Q  D  S  F  Q  K  V  R  V  L  F  W  I  Q  L  L  G  L  A  Y  R  D  R  L  L  F  L  I  L  K  V  F  I  V  I  V  V  T  M  Y  M  *  N  M  V  V  S  L  D  M  N  K  L  T  I  H  I  M  C  S  F  L  K  F  Q  I  I  I  C  R  I  S  *  V  Q  A  V  L  L  F  C  *  S  I  F  Y  *  M  E  A  H  Q  S  F  S  S  S  M  E  Q  L  V  I  F  C  Y  F  A  V  V  N  M  L  A  V  A  N  Y  L  D  S  L  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120092" stop="119457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISRRQVPGIVKHCPPKSTKTSRPEQTKAEHLYVGVDPYMNHRPEMNSDIIDCTSGGLVKNANRNRPPVVGTYTESMTAEFSDATSSDWSLFTSSDEASFTTESTRYSFSTVDYGDANAADPFSSIINSLCGSDYSSNRTVACSMFSSSKPHTRFFSESKGSVLDSTAGTSIPRQVTVPYSEGFHSDSSNHVHVEYGSEPRYEQTYYPYNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 210 chains have been computed
$ 
$ memory statistics:
$ 1233704 bytes spliced alignments in total
$ 159 spliced alignments have been stored
$ 7759 bytes was the average size of a spliced alignment
$ 26688 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1668 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 228 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:34:43
-->
