<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 20:59:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="21256" stop="22093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21556" g_stop="21793" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21556" e_stop="21793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGATTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTATCTGATATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTAT-TCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATT-GCTTA-ATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="21905" stop="22796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22205" g_stop="22496" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22205" e_stop="22496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCATTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACAAGCATCGGCGGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACC-A-AC-A-C--CGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23592" stop="22274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23293" g_stop="22574" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23293" e_stop="22574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGCGACCGCCAGCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTCGTAGCTCATGACAGTCAACAAGAAAATCATAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAGCACTGGAGGTGCCTGACACTAATTGGACAACCCATTGAAATAGGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTCGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23590" stop="22327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23290" g_stop="22627" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23290" e_stop="22627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGCGACCGCCAGCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTCGTAGCTCATGACAGTCAACAAGAAAATCATAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAGCACTGGAGGTGCCTGACACTAATTGGACAACCCATTGAAATAGGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTCGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24229" stop="22841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23930" g_stop="23141" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23930" e_stop="23141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTCAAACAATACAAAATCCATGCAATCACAAACCGAAAGATTACCTGTGATGACCGCATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCTGTCTCCCCACATCCATAACACTCTCTGGAGTCACGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTACCCGCTACCTGTAAGGGTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24154" stop="22857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23854" g_stop="23157" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23854" e_stop="23157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCTGTCTCCCCACATCCATAACACTCTCTGGAGTCACGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTACCCGCTACCTGTAAGGGTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="22898" stop="24929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23197" g_stop="23369" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23370" i_stop="24113" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24114" g_stop="24597" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="658" r_length="485" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23197" e_stop="23369"/>
          <exon e_start="24114" e_stop="24597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCACCCTTACAGGTAGCGGGTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCGTGACTCCAGAGAGTGTTATGGATGTGGGGAGACAGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGCAAACTGGAGCCGCTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTAGGCGGTCTGAAGCGGAGGCATCTGATGCGGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGATTTTGTATTGTTTGACCCTCGATCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTAAATTTACATTGCGAATTACTTGATATACCTATTCGTGTTTCTACTCCGGTGGGCGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTAGTGAATTTTGTGGGGAGCAACACTTCTGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTTTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTAACGTTAGTCAAGCCTGGGACAGATCCGTTAGTGT-GGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTACCCATGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGTGATATTGACTTCTATATTGATCTTGAACCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGACTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTTTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24228" stop="23095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23928" g_stop="23395" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23928" e_stop="23395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAAACAATACAAAATCCATGCAATCACAAACCGAAAGATTACCTGTGATGACCGCATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCTGTCTCCCCACATCCATAACACTCTCTGGAGTCACGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATCAA-CAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24314" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24014" g_stop="23456" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24014" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGATCGAGGGTCAAACAATACAAAATCCATGCAATCACAAACCGAAAGATTACCTGTGATGACCGCATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCTGTCTCCCCACATCCATAACACTCTCTGGAGTCACGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24906" stop="23563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24625" g_stop="23863" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24625" e_stop="23863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCTAAAAATCCTCCCTTCTTCACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCACTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACATGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCT-CCACACTAACGGATCTGTCCCAGGCTTGACTAACGTTACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAAAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACAGAAGTGTTGCTCCCCACAAAATTCACTAAACAAGACCTATATACTTTTTCAACTATCACAGACTCGCCCACCGGAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGATCGAGGGTCAAACAATACAAAATCCATGCAATCACAAACCGAAAGATTACCTGTGATGACCGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACT-CCCATCCT-TCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24906" stop="23664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24625" g_stop="23964" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24625" e_stop="23964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCTAAAAATCCTCCCTTCTTCACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCACTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACATGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCT-CCACACTAACGGATCTGTCCCAGGCTTGACTAACGTTACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAAAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACAGAAGTGTTGCTCCCCACAAAATTCACTAAACAAGACCTATATACTTTTTCAACTATCACAGACTCGCCCACCGGAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACT-CCCATCCT-TCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25787" stop="25010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25487" g_stop="25311" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25487" e_stop="25311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTTAATACTTGAGTGATAACTATTATTGTGTGAAAATTCTGCTAAGGATAAGAAGCTATCCCACTGACCGCCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="21499" stop="38621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27672" g_stop="27922" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27923" i_stop="35734" i_length="7812">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35735" g_stop="35745" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="257" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35746" i_stop="37895" i_length="2150">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37896" g_stop="38308" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="664" r_length="407" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27672" e_stop="27922"/>
          <exon e_start="35735" e_stop="35745"/>
          <exon e_start="37896" e_stop="38308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCGTCGCCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGAGTGGATCTTCTTCTTCGAGTCTTGATGCCTTGAACTTCCGGCATAGACTAGCTTCTTATGTATTTTTTTTAGCTTTTATAATACTCTTAACTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAATGTGGGTGCCAGTCGCGGCCCGGATTTGGACCGTGACATGAATACTATTCTATCAATTTATGATTATTTTACTTAAAAGCTTTAATTTAGTAATATTAATTACAATATTTTATAATATATAATATGATATTTATGTGCAATGCACATGCCGTAAGACTAGTTGACATTAAAAGTACTACCTTTTAGCGTCTATTTATTTTTATTTATCTACTAATTCAATGGATGCTAAAAGAGTATAGTTAGACAATATCAATTACCTTAAGCAGCACACATAATTGTTGTAATCAAGTGGTGTAAAAGCTAATTGTTAAGTGGAAATTTATACTATTCTTTAGCAGAATTCCCATAATGACCGCAAAATCCTTTGTCGGCCCCAACATTGTCGGCTAAAGTTCATTGGATGGTATAGAGTATCATGACAAATGTTTTTGCAGCTAAAGCCATATTGTATGACCGCATAAAATATCTTTTGTAGTAGCGATTGGCATCAATGCAAGTAAATAGACTTTGAATTAGTTGAATTTAGGGATTAAATTGGGCTCAACTGAAGATTCTCTCAAAATGGATTAAGGCTTTAAGGAGTTTAGATTGAATCAAATTCAAATTATTTTTAGCCCAACCCTTAAAATTCCGGGTGGATTAGTCGGGTTATCTATAGTTGGACTCATTTTTTACACCCCTAATAATGATTGAATCAACTCTTTACTCTTAAAACTCACCCATACCATTGTCCTCTATTACTTACTTTGTTCAAGAAAAATATCTTTAAAAAGGAGAGTATATTTATATTAGGAACTATATGTGGGAGTAAAATCCAAACTTTATCAAAATTATTGATAAAATTTTGAAGGATATCCCTTCACTAACAAATTTCATTTGATCTTTTGAACTAGACATCGCTGCCTGAAATAGGGATAATCAATATGATATTATAAATCACACAAACAATATTTTAAGGATTTGTTTGGAATATCTCACTCATAAAGCATATCAAACTCCTTCATTCATGGGAAAGTCAATCTATTCAAGATACATCTATAAAATCTAGGAGACAACAAGGAAAATCAAGATGCAATCAAATCAGTTAAACATGTTAAAGAACTTTGTCCAGATGGTCCATATCCTTTTTTTTTCCAACAATATTGGAACATACTAGGATCCTACACAATGTCTTTCTCTAAAGAAAAACATTCAAAGAGAGATGAATATCAATATCTTGCATGGCTCTCCACCATATAAATGGCTCTCCACCATATAAAGATATAATAAATGTTACCCTATTGTTTATGAATCTGTCATTAGTTTCCTGTATTTCCGCCATATGATGATATACATAGTTAGTCATATTTACTATTTAGGACTTCAATAGTTTCGCTTAAACTAGGTTTCTTTTATTATTATACTTTATATGGTTTGTATTGGCTCTATTTAAAGAGAAGGTTGTATGAGAATAAAAGAATCTTTCTCTACTATATCTCAAACAATTATATGGTATCCATAGCTTTTGTTCTCCTCCAATAGTTCTATTTTCCTTATTACCCACCCACCACCAATGACAGCCTAAGTTACTAATTCTAATGCAGCTAACATTACCACCATTTTTCAATTAAACTTGGTTACCAGCGCTTCCAATTAGACTTGCTAGCATCCATAAATTCTCCCTGTGGAATATGTAAGTGTTCATGCTCATTAGAGGACACAATATTTCTGGTCATCTTGATGGTACTATTTCTGCTCTTCCCGAGACCACCACCACCAACAACTTGGCAATTTCAAACTTCGGTTATGTAAAATGGTTTTGTCAGGACCAGTTAACCCAAAACACAATTCTAACATCAGTAGATCCCAATATTGCTGCTATTGTAGCCACTGCAACCACATCAATATTCCCTCCATACGTCTTATACCAATAAATCACAAACTCACATATTAAGCTTGTGAGATCGCCTCGGCACACAAAAGAGATTCAACTTGTAACATACTATATCAACCAAGTTTGGTCTCTCTGTGGTGAGCTTGCGTGTTCTAGAGCTCCTGTCACAAACAAGATTCTCATTAGTCTTGAACCAGAATCTCATGAAATCTCTGTAGCAATTCGAGATCGTCACATCGCAATTTTGATATGCTAAAGTGTTTGAAAAGATTAGCGATCACGAGCTTTTCCTCAAACACAAAGCTCCACCTCAATCCACTCTAATTGTTGTAGTTGTTTCCGAAGTCAATTCACTAACAAATTTCTATGAGAGATTCACATATCATTGTTTGCTTCACCAACTATTTTTCGTGACAACGTTAGCACCACCTACATTTGTGCTAATCCTGTTTTCACAGTAGGATGAAACATATAGCAATTGAGTTTCATTTTGTTCGTGATCATGTTTAATAGAGGGAACTTAAGGTTCATCACATTCACTCTGTTGATCAAGTCACTGATGTCCTCGTCAAACGTGTTCCCCGAAAAGCTTTTCAGCGCCATTTTCATAGGTTGGGTCTTGTTGCAGTCACCCTCGGCTTGTGGGGCATATTAAGAGATAATAGATGTTACCTATTTGTTTAGGATTCTTTTTTTAGATTATTGTATTTCATCCATATGATGATATACGTAGTTAGTCATCTTTACTATTTAGGAGTTAAATAGTTTCCTGTAAACTAGGTTTTTGCTAATATTGTACTTTAGCGGGTTTGTAAACCTTCACACTCAATGCCTTATAGTTTTGTGCTTCAGATATCTTGTTTGTTCAGAGGTAACCAAATTAATCTGGTGATAGACATATTTTAAGGTTTGAGTTCCCTCACTTGTACATCGTCCACTAGTTAATCTTCCTAAAGTTGAGGCTTCTCTTTTGAAAATAAATAAGAGTAAGAGGTCTTCTGATTTTTCCCATCCCAACCGGCTGCTTCATCAAAATTCAATTCTCGGCTAAGAATTAGTTTTTCTTATTTTAAACATAAAATCTTGTATCATTTGGATGAACTATAGCCTAAAAATATCCCTTTATGAGACTTGTTGTCCAGTTTATTCCTCTTTGTTACTGGAACTCAATAATAACATATAGACTCAAAGATTTTGACATAGTTTACATATGATATGTTCCCACTCAAGGCTTTATATTAAGTCATGTCCTGCAAGGTCTTAGTAGGCAATTTACTTAGAAAATTTATGGAGGTATTGACTGCTTCTGTCAAAAACTAATTTGGGATCTTTCTTTAGAGCAAAAGACATATGTCCATCTCCCTTACCCTCATATTCTTCCTTTTAGACACACCAATTTTTTGTGGAGCGTATGATAGTGTCAATTGACGTTCAATATCTGTGCTATTATAAAATCAACAAAGTGAGAAGAAGTATATTCTCCTCCATTGTCTATATTTAAAGCCTTAATACTAAGATAACATTGATTTTCTTCTAAAGCTTTGAATTGTTTAAAAATATCAAAGACTTCACTCTTCAGTCTAATGAAATAAACCTAACACATTTGTGTGTAGTCATAACTAAAAATGAGAAAGTATTTGTTACTACTCAATGATTTTATTTTTTATTGGGCCGCAAACATCCGTATGAATGAGCTAAAGTTTCAGGTTAGTTCTTCATACATTATTAGATTGATATGTCAATTTTTTTTGCTTCCCCAATTTGTATGTTTCACAAACATAAGAATTAGAAAGAATTTTAGGCATATTTTCCACTAGCTCCTTCTTTGTTGTCTCTGCGATGCTTCCAAGATTGAAGTAATAAAACCTTTTGTGCCATAGGTTTGTACATGTTTGTGATGTAATAGTTTAAGAATGGTCAATTATTTTCATCCTATCGACTAAAAAATTTTGTTGCCCATGTTGACATAAAATAGTTCCACTCCAAAAGGGACAGAAACAACACATTTAATAATCTTAAATGTAGAGAATAATTATTTTCAAGCATTTGTCCAACACTCAATAAATTTTGACTCATATCAGGGGGTGTACAAAACATCATGAATATTTTTTTATACATGATATTGTTGAAGATATACATTGTACCCATAATTTTGACTTTTACTGCCTCACCATTTCACACTTTGTACTTAAGATTTGCAGGTACGATCAAAGGAGTTTGAACATTTGAGCATCATTACATAAGTGATGTGTGCAACGACTATCAAGAAGCCATAAATTAGAGGATTCATTGATTGAAAAGTATGAAATTGTAAATAGTGGCTCCCCATGTATTTCTGCAACTTTTGCTACTTGTTCTTGCAAATCACCATAGGCTTTTGCTCTTTATTTGCAGACCTTGGATATGTGCCCCCTCTATTTGCAGTTTTCACAAATAGCACCGACTCTCTACCAGTAGTACTTCTCCCGATGTGTAAAAATTTTACAGTGTTCGCACGGAGGGAACTTCTGCTTTATATTTCCATGATTTCCTCCGTCATTTTTGCCCTTATTCTTATGGTTGAAATGTTTCTTCCCTTTACTAAATATTTTCTTTTGTACAGAGAAAGCTTCTTCAGTGAACTTGACTCGTCTCATAGTTCTCCTTTGCTCTTATGCTTGAAGAGAACTCATTAGTTCACCTAGAGAAATTTTGCCCAGGTCCCTAGATTCTTCAAGAGAGGAATTGTTAGATTCAAGCCTCTCTGTAAAAGTCATAAAAAATTTCTTCATAATTTATTTGCCTTTAAATTCTTACTAAGATGTCTTAGATTATTAACAATCAATGAAGTTCGATCAACATACTTACTGATTGTCTCATCCTCCTGAATATTGAAGGACTAAAACTCTCTTTCCAGGTTCAACACTTGCATTTGACCTGTTCTATCACTTTATTGATAATCTTTTTTCAACCTATACGAAACCTCTTTTGCATATTTGCAAGCCATGATTTTGTAAAACATGCAATTTGCCACAACATTTTGCATAAGCGATCAGGATTTTAGATTTCTTTGTCCTCTCTTTGTTGTTGAATTTTATTTGATCCAAGGTAGGATTTTCTGGTAGAGCATAAAATGGTTTATCTTCCGTCAAAGTTTCCCAAAGATCATAGGCTTTTAGAAAAGTTTGCATCTTCATAGAAAAGATTTTGTAATTTTACCAGCGGAAGTGAATGGTGGACTTAAAGGTAGGTTGTCAGAAGCCATTTGTATTATAGGTTAAAACATTTTTGTCCTATAAGATCAATTAGAGGCTGTGATACCACTGTTAAAACACAAACAACTCAAGAATTCGATTTGGAGGATAAAATTGGAGTTCACTTTTAAAATTCCAATTGTGTATTAATTTGCAGAAGATCTGAATTTATAATAGGAAAAACCTAACCATTTTCTATCTAGTAGCCACTTACAAAGTGGATCTTAAAACTAAATAAAACCATGTGATACTAAGAGCCCGAAAAGGATCCATTAACAACTATAAAAGATGTCACTACTTCAAAAAGTTGAGCAACTAAACTTGACTAAGTGTACCTAGAAAATAGGAAGCACTAGAGCGAAATAAGTAAAAAATAGTGAAAATAATGAGCTGGAAAAAATGCCAATTATCTAACACTCCAATCATAGTATTATCCACTGCTTCCTTGGTGCTGCCACATGGTCCTTTAACCCGAACATATTCAAGCGATCTCACCAGATAATCATATTGGTCTATGGTTAAGGTTTGAGTTCCCTGAATGTGGTGTGTTGCACTTCACATGTGGTGTGAGCATTTTTTTGTTATTCCAAAATTCCTTCCTCTTGTCCACTCGAAGTTTTTGAGAGAACCTTTCAACCTATAGCACTTGTTTTCTGTCTGTCAAACCTTCCTACAATGATCATAGAACCAATTTGTTTTGTTAATATCAGAAATGGAATAAGTGTTCCTTTTGGCATGTTTAAATGTTTGGAAGGACCTCTATAGACTTTATTTCAATTTGTGTGCTTTTTGTGAGTGGTTTGTTCTTAAATTTCCACTTCTAGAACTAGCACTAAGTGAGATAGAGGCTCCAGAACTAACTGTAAGTATGGTAGAGGCTAAACTCATTCTAGTGGATGGTTTGAATTGTTGGTTATTGTTTTTCCTTTATTTAGTCGTTAGTATTTCAATTGACTTAGTGTGTAGCACATAAATAGTTGCTTGAACAAAGATAGAAGAATCCTTTCAGTTTGTTAGTAGTTGACTTATAGAAAGAGTTAGTGCTATCTTATTTTAAGTTACTAAAACTCTATTGAAGAGAGTTAAATTGATGTAATTCAATCGATCAAAATTTGGGCCTATTGAATGGATCAGCACCAACTTTGTGAGAGAACAGCCAAAGGAAATTGCACTTAACTTGGCAGCATTGAAAATATCTTTCCAAGACCTTTCCAACAGTATCTTGAATTAATACCTACCTCTTACTGAGCTAGGCTTTAAAATCATTTGATGTTGACAAAAACTCAACATTAACTTACTACCAATTTTCAAGATTTCCTCATACTTTCCAACAATTATCATTTTCTAGTTCTTAACTTCTTTCTAGCTATTTCAAGTTTCGATATGTTACAATATCCCCCCCCCCCCTTGGGAATATTCTTCCTCGAATGAGACTACTATTACTAAGCTAAGAGTGGTAACATATAGTTTAAACACCCAACAAGAAAATGTAATAAACAACATGCTTATTCATAATTTAAAGAGTACTGAGAAGAGAATTGGTACTTTGATCCACATTTTTTCCGGATTCAAAGATATAGAGAGTTCTCTTATTCATATCCTCTTAAGCTTCCAAGTAGTTTTCCCAAAAGATTGGGTCCTCCAAAGAACATTGACTGAAGCTACTTCATTAGGTCTCAATTTGTGAAGTTGATGATCTAGAATTTGAATCGGAATATCCTCATAAGATAGACTATCCTTGATCCCAATATTCTTTGTTGGTGTAATCAATGATGAATCACTGATGCACTTTTTCAACATAGAGATGTGAAACACCGGATGAACTGTTGCTAACTCTTGAGGTAGCTCTAACTCATAATATACATTAGCAATCCCCTTGACTATGCGATAAGGTTCAATGTATTGGGGACTAAGCTTTCCCTTCTTACGAAGCCTCATTACCCATTCATGGGTGAAGCCTTCAAATACTCCTAACCATCTGCCTCAAACTCTAACGACCTTCTCCTAATATTTGTGTAGGATTTTTGATGACTCGTCGCCTTTTTCAACCTCTCTTAAATCACCTTCACCTTATCCGTAGCTTGGTGAAATAAATCATGTCCTATTAACCTTGGTTCACCAACCTCAAACCATCAAATAGAAGATCTGCATCTTCACCCACAAATAGTTTCATATGGAGCAATCTAGATGCTAGAATGAAGAAAGTTGTTTTATTCAAACACAATGAGAGGTAGGTGATCATCTCAATTCCCTTTGAATTCAATAACACAATCCATCAGCATATCTTCTAATGTCGGAATGGTACACTCTGCTTGGTCGTCAGTCTTAGGATAAAAGGCAGTACTTAAGTTCACCTTTGAACCCTAACCTTTCTAAAAAGATTTCCTTTATTTGAAATAATAGAGACTAAAACTCCATGCAGTCTTACCACCTCTTGAATGTACATTTTAGCATAAGTCTCTGCCGAATGGGTAGTATTTACCGATAATACCGAGCTGACTTTGTCATTCTATTGACGATCACCTAAATAGAATGATGATGTTTGCGAGATCTAGGTAAACATGTGTTAGTAACACCCTGTATCCAAAAAAGTACAAAAAATGCAGATTTTTAGAAGGTGCAGGTGCCAGCGACAAAGCCAACTATGGACTCTAAGTCGACTCTGCCTATGGGAAAGCTCACTCTCAGTTCCAAGTCACAAATGACGGTTGACTAGTACAGACCGTTACTCGACTAACGATTAGTCAATCAACTCCAATGATTAATCAACTTACTTTTAATTTTCATTCGCAAATGACGGTCCGTCAGCCGACTCCTTTGATTTTCCAGCTTACTTTCAACTCTCAGTCACCAATAATGGTCGACTCGTACGGTCTGTCAGTCGACTCACCGTCCCTCTGTTGACTCCGTCAATTCTAGAACTGACTTCTAACTTTTAGTTACAAATTATTGTCGACCAGTATAGACTGTTAGTCGACTTACAATCTGTCAGTCGACTCTGACAGCTTTTAAGTCAGGAGTCTTTTAGTCTTTTCCTACTTTTTTTGAACCTTAAGATACATCGTTTTGATCCAAAATCATCATATTATAGTAAGTTGAATCCTAGAAACATAAGTAAAACTTACCTAAGACAATATCATAAATCAAAACTGTAATGACCTGTTTAGTCATTTTGAGCAGCAGATTTTCTTTTGGAAAAAAAAACAGGCTGAGGTGACGGACCCCACGACGGACCGTCATGAGCACGATGGACCGTTGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATTGACTCTCTCAACTTCGTAACGAAATGGCAGGACGGACCGTCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACTTGCAGGACGGACCGTCACAGGCACGACGGGCCATCGTAGGTTGCGTAATCCCAATCTGAGTCGGATTTCCTTAATTGTTTTAAGGGGCATTTTTGACTATTCCTGCTTTAATTATATAGTTAGTGGGTTAATGTTAATTAATCTAATTACTTGGGAATTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAGAGAGAGTCGAACGAGAAACGAATAGAAACAAAGCTTGGAAATTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTGTTACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTCTGTTAATAATGAGGCCTTGCTATAAAAGAAGGCGCGATGAACTAAAATAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTAATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTTACGAACCGACACGTAGATATAGGGGAGCAGAGTGTCACGTACCGACACAAGAGGATTAATAAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGACAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTAAACTTGACGGTAATTGTCAATGATATAATACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATATACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCAACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCATCTTCATGTCTTGATGCCTTGAAGTTCCGGCATAGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTAGTTTTTA-TTAATGAGTATAAGTCTTTCACATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGTCAGTCGCGACTCAGTTTTGGGTCGTGACAAACTTGGCATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACAGTAGGGGGACGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTAAGGAAAATTCCATTCTTTCTTTCTTTCTTTCATGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTTGCAGATGGTCAGAACTAGAGCAACGACTACGCCAACACCAACACCA</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA---TTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGG--AATAATAGATGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.............................................................................................................................................................................................................................................TTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTT-GGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA----TTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36571" stop="37575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36871" g_stop="37275" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36871" e_stop="37275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTGTTACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTCTGTTAATAATGAGGCCTTGCTATAAAAGAAGGCGCGATGAACTAAAATAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTAATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTTACGAACCGACACGTAGATATAGGGGAGCAGAGTGTCACGTACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCT-TTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGAT-TAAGGGATCAG-GTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="-" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>atcaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="37808" stop="36890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37508" g_stop="37315" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37314" i_stop="37233" i_length="82">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37232" g_stop="37190" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="239" r_length="44" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37508" e_stop="37315"/>
          <exon e_start="37232" e_stop="37190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGTATTATATCATTGACAATTACCGTCAAGTTTACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTGTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTTATTAATCCTCTTGTGTCGGTACGTGACACTCTGCTCCCCTATATCTACGTGTCGGTTCGTAACAC-CCGATCCCCTAAATCTACATGTCGGTTCGTGA</genome_strand>
        <mrna_strand>ATCAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG..................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="-" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>agtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="38049" stop="36891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37749" g_stop="37315" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37314" i_stop="37233" i_length="82">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37232" g_stop="37191" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="481" r_length="43" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37749" e_stop="37315"/>
          <exon e_start="37232" e_stop="37191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTG-ATATCCGGAGTAATGAAGACTGGCTAGAGTTACTGTTGAGTTGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTTAGTACAAAACACGGGTACTGAGTATATATCATCGGCCAACTCAAAATAGAAATC-A-ATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTATTATATCATTGACAATTACCGTCAAGTTTACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTGTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTTATTAATCCTCTTGTGTCGGTACGTGACACTCTGCTCCCCTATATCTACGTGTCGGTTCGTAACAC-CCGATCCCCTAAATCTACATGTCGGTTCGTG</genome_strand>
        <mrna_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGT-AAGACTGGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG..................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84023" stop="85335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84323" g_stop="85035" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84323" e_stop="85035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATAAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTTCTCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGTTCGAACAAGTCATCAATGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTCTAGTCTATGCATATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACAGGAGAACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGAAACTCTTGAAGTTGTGCCTTTAACTGTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84023" stop="85218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84323" g_stop="84918" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84323" e_stop="84918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATAAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTTCTCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGTTCGAACAAGTCATCAATGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTCTAGTCTATGCATATCCAAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84023" stop="85148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84323" g_stop="84848" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84323" e_stop="84848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATAAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTTCTCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGTTCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84094" stop="85373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84394" g_stop="85073" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84394" e_stop="85073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTTCTCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGTTCGAACAAGTCATCAATGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTCTAGTCTATGCATATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACAGGAGAACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGAAACTCTTGAAGTTGTGCCTTTAACTGTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84094" stop="85052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84394" g_stop="84752" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84394" e_stop="84752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="84615" stop="85872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84912" g_stop="85572" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84912" e_stop="85572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCCCATCCTTCTTCTTCACAAACAAAACAGGAGAACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGAAACTCTTGAAGTTGTGCCTTTAACTGTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGGTTCAAGATGAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAATGCCAAACAACCCTTACTAACAATTTTCTTAGCACGAAGGAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCGGGCTTGGCTAACGTCATAGTTTTAGCGTTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTGTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATACACTCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAACGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="85015" stop="85945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85315" g_stop="85645" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85315" e_stop="85645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCGGGCTTGGCTAACGTCATAGTTTTAGCGTTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTGTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATACACTCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAACGTAAATTAAGACCATTAGCAAATGCAGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87266" stop="86113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86966" g_stop="86413" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86966" e_stop="86413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCATCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATCATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCTCGTCTGATTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGTGTGTCAACCAACAGAGGCACCACCGATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="151488" stop="150448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151188" g_stop="150711" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151188" e_stop="150711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGTGGATTAATAAATA-TGAGGTAGCGGAGTGTCACGTACCGACACAAGACAAATAAAGAACATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTCGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCAGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="+" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="150563" stop="151638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150863" g_stop="151175" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150863" e_stop="151175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGTAGATATCATCGGCCGACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATGTTCTTTATTTGTCTTGTGTCGGTACGTGACACTCCGCTACCTCATATTTATTAATCCACTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="151488" stop="150654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151189" g_stop="150952" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151189" e_stop="150952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGTGGATTAATAAATA-TGAGGTAGCGGAGTGTCACGTACCGACACAAGACAAATAAAGAACATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0060P15-auhYx/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0060P15.1" temp_strand="-" temp_description="C07HBa0060P15.1  AC236936.1 htgs_phase:1 submitted_to_sgn_as:gi|242118054|gb|AC236936.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0060P15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="152017" stop="80872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151717" g_stop="151314" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0060P15.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0060P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151717" e_stop="151314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACTATATTCCTAGTAAACTCTTAATAGTGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTAAATCCCAAATCTTGCAAAACCCGAATCTCTCTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTTGAAAGAAATAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGTGGATCGGGTGTCAGGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCT-TTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAG-GGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="21556" PGL_stop="21793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21556" e_stop="21793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="21556" e_stop="21793" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21556" stop="21793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGATTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTATCTGATATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTATTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  D  E  E  A  *  F  L  I  D  E  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  S  D  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  D  S  S  L  M  S  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  Y  L  I  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  Y  S  S  C  L  F  V </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  *  *  G  G  V  I  P  H  *  *  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  I  *  Y  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  I  L  L  V  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21598" stop="21792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIDELGVVTKGYGNCKCCMLRILVDFMILSDIYTVFYFELADDIYSVPVFCTDPYFYVFFLFIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22205" PGL_stop="22496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22205" e_stop="22496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="22205" e_stop="22496" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22205" stop="22496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCATTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACAAGCATCGGCGGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  Q  A  S  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  H  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  K  H  R  R  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  I  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  I  G  G  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22254" stop="22496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHKHRRDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24625" PGL_stop="22574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24625" e_stop="22574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="24625" e_stop="22574" e_length="2052"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24625" stop="23863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24625" stop="23964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23930" stop="23141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23928" stop="23395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23854" stop="23157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23293" stop="22574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23290" stop="22627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAGCTAAAAATCCTCCCTTCTTCACAAAAAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGTCATTCTATAAGGGGGTATAGAAATGGGGTGAGTACCCGGTTCAAGATCAATATAGAAGTCAATATCACTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACATGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCACACTAACGGATCTGTCCCAGGCTTGACTAACGTTACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAAAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACAGAAGTGTTGCTCCCCACAAAATTCACTAAACAAGACCTATATACTTTTTCAACTATCACAGACTCGCCCACCGGAGTAGAAACACGAATAGGTATATCAAGTAATTCGCAATGTAAATTTAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGATCGAGGGTCAAACAATACAAAATCCATGCAATCACAAACCGAAAGATTACCTGTGATGACCGCATCAGATGCCTCCGCTTCAGACCGCCTAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGCGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCTGTCTCCCCACATCCATAACACTCTCTGGAGTCACGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACAAAATCTACCACTTCTTGGAAGGATTTTGCCGTACCCGCTACCTGTAAGGGTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCGGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGCGACCGCCAGCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTCGTAGCTCATGACAGTCAACAAGAAAATCATAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAGCACTGGAGGTGCCTGACACTAATTGGACAACCCATTGAAATAGGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTCGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> H  K  L  K  I  L  P  S  S  Q  K  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  S  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  H  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  H  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  H  *  R  I  C  P  R  L  D  *  R  Y  R  F  S  I  T  I  Q  D  R  K  L  R  K  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  R  S  V  A  P  H  K  I  H  *  T  R  P  I  Y  F  F  N  Y  H  R  L  A  H  R  S  R  N  T  N  R  Y  I  K  *  F  A  M  *  I  *  T  I  S  K  C  G  R  Y  I  *  K  C  R  S  R  V  K  Q  Y  K  I  H  A  I  T  N  R  K  I  T  C  D  D  R  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  C  L  P  T  S  I  T  L  S  G  V  T  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  K  I  Y  H  F  L  E  G  F  C  R  T  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  I  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  R  P  P  A  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  S  *  L  M  T  V  N  K  K  I  I  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  G  Q  P  I  E  I  G  K  N  L  I  D  H  L  W  G  R  F  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A </first_frame>
            <second_frame>  T  S  *  K  S  S  L  L  H  K  K  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  V  S  T  R  F  K  I  N  I  E  V  N  I  T  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  M  G  S  V  I  P  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  H  T  N  G  S  V  P  G  L  T  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  K  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  E  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  A  E  D  T  Y  E  N  V  D  R  G  S  N  N  T  K  S  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  L  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  A  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  R  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  P  A  T  C  K  G  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  R  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  *  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  Q  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  R  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  S  T  G  G  A  *  H  *  L  D  N  P  L  K  *  A  R  T  *  L  I  I  S  G  V  G  S  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   Q  A  K  N  P  P  F  F  T  K  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  V  I  L  *  G  G  I  E  M  G  *  V  P  G  S  R  S  I  *  K  S  I  S  L  S  G  G  I  P  G  R  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  T  L  T  D  L  S  Q  A  *  L  T  L  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  Q  K  C  C  S  P  Q  N  S  L  N  K  T  Y  I  L  F  Q  L  S  Q  T  R  P  P  E  *  K  H  E  *  V  Y  Q  V  I  R  N  V  N  L  D  H  *  Q  M  R  K  I  H  M  K  M  *  I  E  G  Q  T  I  Q  N  P  C  N  H  K  P  K  D  Y  L  *  *  P  H  Q  M  P  P  L  Q  T  A  *  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  R  L  Q  F  A  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  L  S  P  H  I  H  N  T  L  W  S  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  Q  N  L  P  L  L  G  R  I  L  P  Y  P  L  P  V  R  V  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  G  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  D  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  A  T  A  S  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  Q  E  N  H  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  A  L  E  V  P  D  T  N  W  T  T  H  *  N  R  Q  E  P  D  *  S  S  L  G  *  V  R  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24306" stop="23830"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFTNHFLSTKKGDDTHRIGSVVTLHTNGSVPGLTNVTVLALQSKIANCGKSQVIPRITSKSSISKITKSTEVLLPTKFTKQDLYTFSTITDSPTGVETRIGISSNSQCKFRPLANAEDTYENVDRGSNNTKSMQSQTERLPVMTASDASASDRLGKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23472" stop="23197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVPATCKGEIRNSDLNPFTKRRIRSCGLKQSWVAYRDSARNLASYALTDILP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23782" stop="23528"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSCLPTSITLSGVTHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22780" stop="22574"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIGQPIEIGKNLIDHLWGRFGWQSLILHLFIFPILPFSYYFFSRWRSHRPSIRWA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24507" stop="24307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGVSTRFKINIEVNITIWWHTRKICKEHIQKLTDHRNRLNRRYMGSVIPEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23197" PGL_stop="24597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23197" e_stop="23369"/>
            <exon e_start="24114" e_stop="24597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="23197" e_stop="23369" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23370" i_stop="24113" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="24114" e_stop="24597" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23197" stop="23369"/>
              <exon start="24114" stop="24597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCCGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCACCCTTACAGGTAGCGGGTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTTTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTAACGTTAGTCAAGCCTGGGACAGATCCGTTAGTGTGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAGGGATGACACTACCCATGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGTGATATTGACTTCTATATTGATCTTGAACCGGGTACTCACCCCATTTCTATACCCCCTTATAGAATGACTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTTTTT</gDNA_template>
            <first_frame> S  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  P  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  T  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  N  V  S  Q  A  W  D  R  S  V  S  V  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  H  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  S  D  I  D  F  Y  I  D  L  E  P  G  T  H  P  I  S  I  P  P  Y  R  M  T  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  F  F </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  P  L  Q  V  A  G  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  F  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  V  K  P  G  T  D  P  L  V  W  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  G  M  T  L  P  M  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  V  I  L  T  S  I  L  I  L  N  R  V  L  T  P  F  L  Y  P  L  I  E  *  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  F   </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  H  P  Y  R  *  R  V  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  F  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  S  S  L  G  Q  I  R  *  C  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  C  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  *  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  D  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24190" stop="24597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGNVSQAWDRSVSVEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLRDDTTHVPSIESVSVVREFLDVFLADLPGMPPDSDIDFYIDLEPGTHPISIPPYRMTPAELRELKAQLQELLNKGFIRPSASPWGAPVFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23198" stop="23369"/>
                    <exon start="24114" stop="24310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISPLQVAGTAKSFQEMDDFDVILGMTWLFPQFAILDCNAKTVTLVKPGTDPLVWRVTTLPIRCVSSPFFVLRKWLVKGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25487" PGL_stop="25311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25487" e_stop="25311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="25487" e_stop="25311" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25487" stop="25311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTTAATACTTGAGTGATAACTATTATTGTGTGAAAATTCTGCTAAGGATAAGAAGCTATCCCACTGACCGCCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  M  L  I  L  E  *  *  L  L  L  C  E  N  S  A  K  D  K  K  L  S  H  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  C  *  Y  L  S  D  N  Y  Y  C  V  K  I  L  L  R  I  R  S  Y  P  T  D  R  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  V  N  T  *  V  I  T  I  I  V  *  K  F  C  *  G  *  E  A  I  P  L  T  A  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27672" PGL_stop="38308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27672" e_stop="27922"/>
            <exon e_start="35735" e_stop="35745"/>
            <exon e_start="37896" e_stop="38308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.900" e_score="0.928"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="27672" e_stop="27922" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="27923" i_stop="35734" i_length="7812"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="35735" e_stop="35745" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35746" i_stop="37895" i_length="2150"/>
          </intron>
          <exon e_serial="3" e_score="0.915">
            <gDNA_exon_boundary e_start="37896" e_stop="38308" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27672" stop="27922"/>
              <exon start="35735" stop="35745"/>
              <exon start="37896" stop="38308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCGTCGCCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGAGTGGATCTTCTTCTTCGAGTCTTGATGCCTTGAACTTCCGGCATAGACTAGCTTCTTATGTATTTTTTTTAGCTTTTATAATACTCTTAACTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGATAATAATAGTTATTG : ATTTTTAGAAG : TTATTGAATTAGTTTTTATTAATGAGTATAAGTCTTTCACATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGTCAGTCGCGACTCAGTTTTGGGTCGTGACAAACTTGGCATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACAGTAGGGGGACGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTAAGGAAAATTCCATTCTTTCTTTCTTTCTTTCATGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTTGCAGATGGTCAGAACTAGAGCAACGACTACGCCAACACCAACACCA</gDNA_template>
            <first_frame> Q  Q  T  C  R  R  L  R  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  E  W  I  F  F  F  E  S  *  C  L  E  L  P  A  *  T  S  F  L  C  I  F  F  S  F  Y  N  T  L  N  L  V  I  *  S  *  M  F  L  W  *  *  L  P  D  F  G  D  N  N  S  Y  * :   F  L  E   : V  I  E  L  V  F  I  N  E  Y  K  S  F  T  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  V  S  R  D  S  V  L  G  R  D  K  L  G  I  R  A  L  G  L  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  S  R  G  T  P  L  L  F  F  K  R  L  *  D  L  R  K  I  P  F  F  L  S  F  F  H  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  N  H  L  H  S  I  L  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P </first_frame>
            <second_frame>  S  K  R  A  V  A  F  D  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  S  G  S  S  S  S  S  L  D  A  L  N  F  R  H  R  L  A  S  Y  V  F  F  L  A  F  I  I  L  L  T  *  S  F  D  R  R  C  S  C  G  D  D  F  Q  I  L  G  I  I  I  V  I   : D  F  *  K  :  L  L  N  *  F  L  L  M  S  I  S  L  S  H  Y  F  M  L  I  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  S  V  A  T  Q  F  W  V  V  T  N  L  A  S  E  H  *  V  C  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  *  G  K  F  H  S  F  F  L  S  F  M  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  C  R  W  S  E  L  E  Q  R  L  R  Q  H  Q  H   </second_frame>
            <third_frame>   A  N  V  P  S  P  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  V  D  L  L  L  R  V  L  M  P  *  T  S  G  I  D  *  L  L  M  Y  F  F  *  L  L  *  Y  S  *  L  S  H  L  I  V  D  V  L  V  V  M  T  S  R  F  W  G  *  *  *  L  L  :  I  F  R  S :   Y  *  I  S  F  Y  *  *  V  *  V  F  H  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  L  S  F  G  S  *  Q  T  W  H  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  Q  *  G  D  A  F  T  F  L  *  E  A  I  R  L  K  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  Q  N  *  S  N  D  Y  A  N  T  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36871" e_stop="37275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="36871" e_stop="37275" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36871" stop="37275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTGTTACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTCTGTTAATAATGAGGCCTTGCTATAAAAGAAGGCGCGATGAACTAAAATAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTAATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTTACGAACCGACACGTAGATATAGGGGAGCAGAGTGTCACGTACCGACACA</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  C  Y  D  I  R  S  K  L  L  I  P  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  I  M  R  P  C  Y  K  R  R  R  D  E  L  K  *  *  Y  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  L  R  T  D  T  *  I  *  G  S  R  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  V  T  I  F  V  V  N  S  *  Y  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  A  I  K  E  G  A  M  N  *  N  N  D  I  D  D  A  L  V  R  K  K  A  *  *  I  N  R  R  R  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I  G  C  Y  E  P  T  R  R  Y  R  G  A  E  C  H  V  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  T  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  S  V  N  N  E  A  L  L  *  K  K  A  R  *  T  K  I  M  I  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  R  H  V  D  I  G  E  Q  S  V  T  Y  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37749" PGL_stop="37190"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37749" e_stop="37315"/>
            <exon e_start="37232" e_stop="37190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.860"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="37749" e_stop="37315" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37314" i_stop="37233" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.860">
            <gDNA_exon_boundary e_start="37232" e_stop="37190" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37315"/>
              <exon start="37232" stop="37191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37508" stop="37315"/>
              <exon start="37232" stop="37190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGAGTTACTGTTGAGTTGAAGATGACGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTTAGTACAAAACACGGGTACTGAGTATATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTATTATATCATTGACAATTACCGTCAAGTTTACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTGTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCG : GTTCGTAACACCCGATCCCCTAAATCTACATGTCGGTTCGTGA</gDNA_template>
            <first_frame> S  P  S  *  K  H  *  L  T  L  I  S  G  V  M  K  T  G  *  S  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  T  R  R  K  H  K  S  R  G  *  Y  K  T  R  V  L  S  I  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  L  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  T  I  F  Q  D  S  L  S  L  F  V  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  :  V  R  N  T  R  S  P  K  S  T  C  R  F  V  </first_frame>
            <second_frame>  V  Q  A  R  S  I  S  S  P  *  Y  P  E  *  *  R  L  A  R  V  T  V  E  L  K  M  T  A  R  L  L  H  S  T  N  K  Q  E  E  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  Y  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  D  N  Y  R  Q  V  Y  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  P  S  F  K  I  H  Y  L  Y  L  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R :   F  V  T  P  D  P  L  N  L  H  V  G  S  * </second_frame>
            <third_frame>   S  K  L  E  A  L  A  H  P  D  I  R  S  N  E  D  W  L  E  L  L  L  S  *  R  *  R  H  V  C  C  T  P  Q  I  N  K  K  K  T  *  K  *  G  L  V  Q  N  T  G  T  E  Y  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  I  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  Y  H  L  S  R  F  I  I  F  I  C  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V   : G  S  *  H  P  I  P  *  I  Y  M  S  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="84323" PGL_stop="85645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84323" e_stop="85645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="84323" e_stop="85645" e_length="1323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84323" stop="85035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84323" stop="84918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84323" stop="84848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84394" stop="85073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84394" stop="84752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84912" stop="85572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85315" stop="85645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATAAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCATAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCTGAAAAGCAGTCTTTGGCACATCCGTTTCTCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGTTCGAACAAGTCATCAATGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGTCTCTAGTCTATGCATATCCAAAAACTCCCATCCTTCTTCTTCACAAACAAAACAGGAGAACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGAAACTCTTGAAGTTGTGCCTTTAACTGTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGGTTCAAGATGAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTATCGAAACCGACTCAATTGTAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAATGCCAAACAACCCTTACTAACAATTTTCTTAGCACGAAGGAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCGGGCTTGGCTAACGTCATAGTTTTAGCGTTACAATCCAAGATTGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTGTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATACACTCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAACGTAAATTAAGACCATTAGCAAATGCAGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  I  I  W  L  K  N  P  I  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  L  K  S  S  L  W  H  I  R  F  S  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  F  E  Q  V  I  N  A  R  N  G  I  F  V  L  N  S  Y  L  V  Q  L  S  L  V  Y  A  Y  P  K  T  P  I  L  L  L  H  K  Q  N  R  R  T  P  R  R  C  T  W  S  N  K  A  F  A  *  K  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  A  R  F  K  M  N  A  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  D  Y  R  N  R  L  N  C  R  Y  L  G  S  I  I  P  E  M  C  Q  E  C  Q  T  T  L  T  N  N  F  L  S  T  K  E  G  D  D  T  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  G  L  G  *  R  H  S  F  S  V  T  I  Q  D  C  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  H  S  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  T  *  I  K  T  I  S  K  C  R  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  *  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  *  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  S  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  C  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  L  *  S  M  H  I  Q  K  L  P  S  F  F  F  T  N  K  T  G  E  P  Q  G  D  A  L  G  L  I  K  P  L  L  R  N  S  *  S  C  A  F  N  C  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  *  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  I  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  N  A  K  Q  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  I  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  C  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  R  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  K  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  L  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  H  N  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  F  L  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  V  R  T  S  H  Q  C  E  E  W  D  I  C  S  *  *  L  P  C  S  T  V  S  S  L  C  I  S  K  N  S  H  P  S  S  S  Q  T  K  Q  E  N  P  K  E  M  H  L  V  *  *  S  L  C  L  E  T  L  E  V  V  P  L  T  V  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  C  P  V  Q  D  E  C  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  S  K  P  T  Q  L  *  V  L  G  *  Y  H  P  *  D  V  P  R  M  P  N  N  P  Y  *  Q  F  S  *  H  E  G  R  R  *  Y  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  R  A  W  L  T  S  *  F  *  R  Y  N  P  R  L  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  V  H  K  Y  C  S  P  Q  K  S  P  N  K  T  Y  T  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  Q  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85028" stop="85312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASARFKMNAEVNIPIWWHTRKICREHIQKLADYRNRLNCRYLGSIIPEMCQECQTTLTNNFLSTKEGDDTNRIGSVVTLPH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84587" stop="84826"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIIIWLKNPIHQAHESSRGIRKTKRHHYKFVMPIPGLKSSLWHIRFSYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85089" stop="85295"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQKSISLSGGIPGRSAGNTSKNSRTIETDSIVGTWVVSSLRCAKNAKQPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85446" stop="85643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTKQDLYTLSTITDSPTGVETRIGMSSNSQRKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="86966" PGL_stop="86413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86966" e_stop="86413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="86966" e_stop="86413" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86966" stop="86413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCATCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATCATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCTCGTCTGATTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTATGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGTGTGTCAACCAACAGAGGCACCACCGATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  D  H  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  H  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  Y  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  C  V  S  T  N  R  G  T  T  D  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  H  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  I  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  I  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  M  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  V  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  I  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  S  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  V  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  T  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  C  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  M  P  K  C  G  G  G  H  M  L  C  V  N  Q  Q  R  H  H  R  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0060P15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86965" stop="86414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTHPPTEEVVREGEEGETEQVQNEGLPPQPTPEIINQVLAYLSGLSDQGQTPPVFSAPAPQGPEVQHAATVAPRMDASLDIGTFPRLITGPIMTNDQHELFSMFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVVCQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="151189" PGL_stop="150711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151189" e_stop="150711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="151189" e_stop="150711" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151189" stop="150952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151188" stop="150711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACGAACCGACACGTAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGTGGATTAATAAATATGAGGTAGCGGAGTGTCACGTACCGACACAAGACAAATAAAGAACATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTCGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCAGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> T  R  T  D  T  *  I  *  G  S  G  V  S  R  T  D  T  S  G  L  I  N  M  R  *  R  S  V  T  Y  R  H  K  T  N  K  E  H  E  S  *  K  M  V  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  A  E  C  H  V  P  T  Q  V  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  Q  I  K  N  M  N  L  E  R  W  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  S  A  D  D  I  Y  L  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  Q  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  E  R  S  V  T  Y  R  H  K  W  I  N  K  Y  E  V  A  E  C  H  V  P  T  Q  D  K  *  R  T  *  I  L  K  D  G  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  R  P  M  I  S  T  *  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  R  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="150863" PGL_stop="151175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150863" e_stop="151175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="150863" e_stop="151175" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150863" stop="151175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTAAGTAGATATCATCGGCCGACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATGTTCTTTATTTGTCTTGTGTCGGTACGTGACACTCCGCTACCTCATATTTATTAATCCACTTGTGTCGGTACGTGACACTCCGCTCCCCTAAATCTAC</gDNA_template>
            <first_frame> T  K  *  I  S  S  A  D  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  Y  H  L  S  R  F  M  F  F  I  C  L  V  S  V  R  D  T  P  L  P  H  I  Y  *  S  T  C  V  G  T  *  H  S  A  P  L  N  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  T  I  F  Q  D  S  C  S  L  F  V  L  C  R  Y  V  T  L  R  Y  L  I  F  I  N  P  L  V  S  V  R  D  T  P  L  P  *  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  R  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  P  S  F  K  I  H  V  L  Y  L  S  C  V  G  T  *  H  S  A  T  S  Y  L  L  I  H  L  C  R  Y  V  T  L  R  S  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="151717" PGL_stop="151314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151717" e_stop="151314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="151717" e_stop="151314" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151717" stop="151314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACTATATTCCTAGTAAACTCTTAATAGTGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTAAATCCCAAATCTTGCAAAACCCGAATCTCTCTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTTGAAAGAAATAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGTGGATCGGGTGTCAGGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  Y  I  P  S  K  L  L  I  V  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  R  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  *  K  K  *  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  W  I  G  C  Q  E  P  T   </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  L  V  N  S  *  *  *  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  E  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  F  E  R  N  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  S  G  S  G  V  R  N  R  H  </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  L  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  K  S  Q  I  L  Q  N  P  N  L  S  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  L  K  E  I  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  V  D  R  V  S  G  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0060P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 235 chains have been computed
$ 
$ memory statistics:
$ 213728 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 7633 bytes was the average size of a spliced alignment
$ 18680 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1556 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 308 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:04:58
-->
