<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:04:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="305" stop="1290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="605" g_stop="990" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="605" e_stop="990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207751" ref_strand="+" ref_description="SGN-E207751 [cLEC-32-E24]">
      <seq>gagaattgaagctgagtattccaacaatgagttcattatctttgcgactttacaacttcctgctggaaggactagttttaatcaagcttggcaaaatggtgctgtttctggtcaggctttgactgctcatactcaatctggtgataacatgagatcttttggtagtgttgattttgctaatggagagttaggtggtggtggtagttcagttacttctagacaacgtagaagaaatgttcatggagtattgaatgcagtgagttggggagtgttaatgccaatgggtgcagtatttgcaaggtacttgaaggttttcaaagcagcaaatccagcttggttttatatacatgttgcttgtcaaacttctgcatatattgttggtgttgctggatggggaactggtctcaaacttggcagtgattctaccggtatcgaattcactactcacaggaacattggcatcactctcttttgcctcggaacacttcaggtatttgctttgcttctgaggccaaagccagaccacaagtacagattatactggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="1389" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1600" g_stop="1834" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1835" i_stop="2238" i_length="404">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2239" g_stop="2493" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="490" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2494" i_stop="2864" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2865" g_stop="2922" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="548" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E207751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1600" e_stop="1834"/>
          <exon e_start="2239" e_stop="2493"/>
          <exon e_start="2865" e_stop="2922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAATGTGAGTAATTCGCGTACCCTTTCTTCTTCTTTTTTCGTTAGAATTTAACTTATATATACTGACAGTAGGTATCGATTAGAGTTGGTTTGGATCATTACTTTTGAATCTATTAGGGTTTGCTTTGGTACGAGGGATAAGAGATATAGGATGAGATAAAATCGCAGGTTTTTCCCAACCAAATGAGCCGTTATAATTTCATTACCTAGTTTAACAGACTCAATTTATCTTGAAAGTCCAATTGACTTAACCTTAAGTTGAACTCATCAAGTTGTTATGTGATACAACACGAAAACTACGTACAAATTTGGGTCAACTATATGAATCTTTGCTTACGATATTACTCATTTTTGTATCCACTACCCCTAAGAGCAACAAAGAATTTGACATGTTTGTAAATTTGACAGGTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACA</genome_strand>
        <mrna_strand>GAGAATTGAAGCTGAGTATTCCAACAATGAGTTCATTATCTTTGCGACTTTACAACTTCCTGCTGGAAGGACTAGTTTTAATCAAGCTTGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390324" ref_strand="+" ref_description="SGN-E390324 [TUS-17-K5](-)">
      <seq>catatattgttggtgttgctggatggggaactggtctcaaacttggcagtgattctaccggtatcgaattcactactcacaggaacattggcatcactctcttttgcctcggaacacttcaggtatttgctttgcttctgaggccaacccccgaccacaagtacagattatactggaacatctaccaccatgctgttggatacgcggtaataagtctgagcatcgcgaatgtttacaaaggatttgatgcattgaatggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaatggaacaaatggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtctttttttttttttaatttttgcagattgatatatattcttgtatacatcatatatgttgaaagaccacctatttgtggttttatttattattactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="2072" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2372" g_stop="2493" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2494" i_stop="2864" i_length="371">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2865" g_stop="3350" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="609" r_length="487" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="622"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E390324" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2372" e_stop="2493"/>
          <exon e_start="2865" e_stop="3350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTC-TTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</genome_strand>
        <mrna_strand>CATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCTTTGCTTCTGAGGCCAACCCCCGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397599" ref_strand="+" ref_description="SGN-E397599 [TUS-46-G19](-)">
      <seq>ggcagtgattctaccggtatcgaattcattactcacaggaacattggcatcactcttttttgcctcggaacacttcaggtatttgctttgcttttgaggccaaagccagaccacaagtacagattatactggaacatctaccaccatgctgttggatacgcggtaataagtctgagcatcgcgaatgtttacaaaggatttgatgcattgaatggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaatggaacaaatggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtctttttttttttttaatttttgcagattgatatatattcttgtatacatcatatatgttgaaagaccacctatttgtggttttatttattattactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="2116" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2416" g_stop="2493" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2494" i_stop="2864" i_length="371">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2865" g_stop="3350" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="565" r_length="487" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="578"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E397599" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2416" e_stop="2493"/>
          <exon e_start="2865" e_stop="3350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTC-TTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</genome_strand>
        <mrna_strand>GGCAGTGATTCTACCGGTATCGAATTCATTACTCACAGGAACATTGGCATCACTCTTTTTTGCCTCGGAACACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCTTTGCTTTTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308047" ref_strand="-" ref_description="SGN-E308047 [cLEY-14-D15]">
      <seq>tttgcctcggaacacttcaggtatttgctttgcttctgaggccaaagccagaccacaagtacagattatactggaacatctaccaccatgctgttggatacgcggtaataagtctgagcatcgcgaatgtttacaaaggatttgatgcattgaatggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaatggaacaaatggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtcttttttttttttaatttttgcagattgatatatattcttgtatacatcatatatgttgaaagaccacctatttgtggttttatttattattactagttttttttttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="2174" stop="30774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2474" g_stop="2493" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2494" i_stop="2864" i_length="371">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2865" g_stop="3363" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="519" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3364" i_stop="4085" i_length="722">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4086" g_stop="4113" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="547" r_length="28" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E308047" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308047" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2474" e_stop="2493"/>
          <exon e_start="2865" e_stop="3363"/>
          <exon e_start="4086" e_stop="4113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTCGGAACACTTCAGGTAACGCATTAACTCTAAATCTTGAATTCACTCTTGCAAACATTTGCACACAAACAAAAGAGCTTAGTACATAACCGACCCCTCAAACTTTCCCCCTTTTTTTCATTTAGACACATGAGCTAAGGGTTTACACACATTTGATAGAGTATGTGCGACAGGTTCAACTGAACAAATTGTTTTTACTTATGTGAACGCATGAACTATAAATCTTGAATTCACTTTTGCAAACACATAAAAGAACGGATTTTTTTTGGTTTAATACATAGATGCCTCCCTCAAACTTGCTCGATGGTTTTATCATTTAGACACCTGAGCTAACGGTTATAGCCGACCTTCATTGTTACTAATTTGTATGATTACAAACATTGTAGGTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTAGTTTTTTTTTTCATTCTATTATGTTTGAGTTTAATTTCTGTACACGAATAATATAATCTGCGAGAAGAGTAACTATTTATGATATGTTCATGTTAGAGACTAACTTTTAAATATAACCTGCGAGAAGAGTAACTATTTAAGACATGTTCAAATTAGAGACTATTATATTTGAGTTTAATTTCTGTGCACTAACAGTACAGCCTGCTAGAAGAGTAACTATTTAAGATATGTTCAAGTTAGAGACTAACTTTGAAATATAATCTGCGAGAAGAGTAACTATTTAAGACATGTTCATTAGAAACTATTATATTTGAGTTTAATTTCTGTGCACTAACAATATGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTCCCTCCTGTGTGAGCGAACCAACCAAACCTAAATCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGAAGTAATGAAGACTGGCTAGAGTTACTGTTGAGTCGAAGATGACGGCACGCTTGCTGCACTCCACAATTAAACAAGAAGAAAACATAAAAGTA</genome_strand>
        <mrna_strand>TTTGCCTCGGAACACTTCAG...................................................................................................................................................................................................................................................................................................................................................................................GTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTAGTTTTTTTTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293692" ref_strand="+" ref_description="SGN-E293692 [cLET-21-D4]">
      <seq>aaaactagtaataataaataaaaccacaaataggtggtctttcaacatatatgatgtatacaagaatatatatcaatctgcaaaaattaaaaaaaaaaagacaaaatctgaccaaacaacaaaaaacatataaacatacaaaaatgttcaaagtgatatttttaagttatgcctgttgatgagtcccatttccataaggattaacagtaccatttgttccattttgtgtgtgcttgttagagtctgtttttttccttttaatgacaatgaaccaagtaaaagcttctaataaaacagcaatggcacctatggctatgatcacaccagtgtaagccctcttccaattcttctgtccattcaatgcatcaaatcctttgtaaacattcgcgatgctcagacttattaccgcgtatccaacagcatggtggtagatgttccagtataatctgtacttgtggtctggctttggcctcagaagcaaagcaaatacctgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="3655" stop="2558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3355" g_stop="2858" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E293692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3355" e_stop="2858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAGTAATAATAAATAAAACCACAAATAGGTGGTCTTTCAACATATATGATGTATACAAGAATATATATCAATCTGCAAAAATTAAAAAAAAAAAAGACAAAATCTGACCAAACAACAAAAAACATATAAACATACAAAAATGTTCAAAGTGATATTTTTAAGTTATGCCTGTTGATGAGTCCCATTTCCATAAGGATTAACAGTACCATTTGTTCCATTTTGTGTGTGCTTGTTAGAGTCTGTTTTTTTCCTTTTAATGACAATGAACCAAGTAAAAGCTTCTAATAAAACAGCAATGGCACCTATGGCTATGATCACACCAGTGTAAGCCCTCTTCCAATTCTTCTGTCCATTCAATGCATCAAATCCTTTGTAAACATTCGCGATGCTCAGACTTATTACCGCGTATCCAACAGCATGGTGGTAGATGTTCCAGTATAATCTGTACTTGTGGTCTGGCTTTGGCCTCAGAAGCAAAGCAAATACCTACAAT</genome_strand>
        <mrna_strand>AAAACTAGTAATAATAAATAAAACCACAAATAGGTGGTCTTTCAACATATATGATGTATACAAGAATATATATCAATCTGCAAAAATT-AAAAAAAAAAAGACAAAATCTGACCAAACAACAAAAAACATATAAACATACAAAAATGTTCAAAGTGATATTTTTAAGTTATGCCTGTTGATGAGTCCCATTTCCATAAGGATTAACAGTACCATTTGTTCCATTTTGTGTGTGCTTGTTAGAGTCTGTTTTTTTCCTTTTAATGACAATGAACCAAGTAAAAGCTTCTAATAAAACAGCAATGGCACCTATGGCTATGATCACACCAGTGTAAGCCCTCTTCCAATTCTTCTGTCCATTCAATGCATCAAATCCTTTGTAAACATTCGCGATGCTCAGACTTATTACCGCGTATCCAACAGCATGGTGGTAGATGTTCCAGTATAATCTGTACTTGTGGTCTGGCTTTGGCCTCAGAAGCAAAGCAAATACCTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398755" ref_strand="+" ref_description="SGN-E398755 [TUS-46-G17](-)">
      <seq>ccccccccaagtacagattatactggaacatttaccaccatgctgttggatacgcggtaataagtctgagcatcgcgaatgtttacaaaggatttgatgcattgaatggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaatggaacaaatggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtctttttttttttttaatttttgcagattgatatatattcttgtatacatcatatatgttgaaagaccacctatttgtggttttatttattattactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="2597" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2893" g_stop="3350" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="472"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E398755" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2893" e_stop="3350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTC-TTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</genome_strand>
        <mrna_strand>CCCCCCCCAAGTACAGATTATACTGGAACATTTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308046" ref_strand="+" ref_description="SGN-E308046 [cLEY-14-D13]">
      <seq>tagtctcgagtttttttttttttttttttgaaaaaaaaaactagtaataataaataaaaccacaaataggtggtctttcaacatatatgatgtatacaagaatatatatcaatctgcaaaaattaaaaaaaaaaaagacaaaatctgaccaaacaacaaaaaacatataaacatacaaaaatgttcaaagtgatatttttaagttatgcctgttgatgagtcccatttccataaggattaacagtaccatttgttccattttgtgtgtgcttgttagagtctgtttttttccttttaatgacaatgaaccaagtaaaagcttctaataaaacagcaatggcacctatggctatgatcacaccagtgtaagccctcttccaattcttctgtccattcaatgcatcaaatcctttgtaaacattcgcgatgctcagacttattaccgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="30774" stop="2645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3622" g_stop="3599" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.583"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3598" i_stop="3369" i_length="230">
            <donor d_prob="0.818" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3368" g_stop="2945" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="447" r_length="424" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E308046" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3622" e_stop="3599"/>
          <exon e_start="3368" e_stop="2945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCAGATTATATTTCAAAGTTAGTCTCTAACTTGAACATATCTTAAATAGTTACTCTTCTAGCAGGCTGTACTGTTAGTGCACAGAAATTAAACTCAAATATAATAGTCTCTAATTTGAACATGTCTTAAATAGTTACTCTTCTCGCAGGTTATATTTAAAAGTTAGTCTCTAACATGAACATATCATAAATAGTTACTCTTCTCGCAGATTATATTATTCGTGTACAGAAATTAAACTCAAACATAATAGAATGAAAAAAAAAACTAGTAATAATAAATAAAACCACAAATAGGTGGTCTTTCAACATATATGATGTATACAAGAATATATATCAATCTGCAAAAATTAAAAAAAAAAAAGACAAAATCTGACCAAACAACAAAAAACATATAAACATACAAAAATGTTCAAAGTGATATTTTTAAGTTATGCCTGTTGATGAGTCCCATTTCCATAAGGATTAACAGTACCATTTGTTCCATTTTGTGTGTGCTTGTTAGAGTCTGTTTTTTTCCTTTTAATGACAATGAACCAAGTAAAAGCTTCTAATAAAACAGCAATGGCACCTATGGCTATGATCACACCAGTGTAAGCCCTCTTCCAATTCTTCTGTCCATTCAATGCATCAAATCCTTTGTAAACATTCGCGATGCTCAGACTTATTACCGCG</genome_strand>
        <mrna_strand>TAGTCTCG-AGTTTTTTTTTTTTT......................................................................................................................................................................................................................................TTTTTTGAAAAAAAAAACTAGTAATAATAAATAAAACCACAAATAGGTGGTCTTTCAACATATATGATGTATACAAGAATATATATCAATCTGCAAAAATTAAAAAAAAAAAAGACAAAATCTGACCAAACAACAAAAAACATATAAACATACAAAAATGTTCAAAGTGATATTTTTAAGTTATGCCTGTTGATGAGTCCCATTTCCATAAGGATTAACAGTACCATTTGTTCCATTTTGTGTGTGCTTGTTAGAGTCTGTTTTTTTCCTTTTAATGACAATGAACCAAGTAAAAGCTTCTAATAAAACAGCAATGGCACCTATGGCTATGATCACACCAGTGTAAGCCCTCTTCCAATTCTTCTGTCCATTCAATGCATCAAATCCTTTGTAAACATTCGCGATGCTCAGACTTATTACCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390274" ref_strand="+" ref_description="SGN-E390274 [TUS-40-K5](-)">
      <seq>gtaataagtttgagcatcgcgaatgtttacaaaggatttgatgcattgaagggacagaagaattggaagagggcttacactggtgtgatcatagccataggtgccattgctgttttattagaagcttttacttggttcattgtcattaaaaggaaaaaaacagactctaacaagcacacacaaaagggaacaaaaggtactgttaatccttatggaaatgggactcatcaacaggcataacttaaaaatatcactttgaacatttttgtatgtttatatgttttttgttgtttggtcagattttgtctttttttttttataatttttgcagattgatatatattattgtatacgatcgatatatgttgaaagaccaccttatttgtggttttatttattattaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="2649" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2949" g_stop="3350" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="419"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E390274" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2949" e_stop="3350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTT-TAATTTTTGCAGATTGATATATATTCTTGTATAC-ATC-ATATATGTTGAAAGACCACC-TATTTGTGGTTTTATTTATTATTACTA</genome_strand>
        <mrna_strand>GTAATAAGTTTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAAGGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAAGGGAACAAAAGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTATAATTTTTGCAGATTGATATATATTATTGTATACGATCGATATATGTTGAAAGACCACCTTATTTGTGGTTTTATTTATTATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4762" stop="3684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4462" g_stop="3984" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4462" e_stop="3984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGATTAATATACTCAATCTAATGAACATAATTCTCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTTATTATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAGCGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTTCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATG-TTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4763" stop="3927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4463" g_stop="4225" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4463" e_stop="4225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGATTAATATACTCAATCTAATGAACATAATTCTCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTTATTATGACATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATG-TTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550484" ref_strand="+" ref_description="SGN-E550484 [TUS-5-F12]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaaagattttctcaaccatgaattaatgaaaaaattatgccataaaatataaaaaatttactcatttttcattgagctaattcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="30766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5182" g_stop="5542" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12149" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="566" r_length="211" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12150" i_stop="13749" i_length="1600">
            <donor d_prob="0.958" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13750" g_stop="13784" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="601" r_length="35" r_score="0.686"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13785" i_stop="14001" i_length="217">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14002" g_stop="14047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="645" r_length="44" r_score="0.674"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14048" i_stop="14107" i_length="60">
            <donor d_prob="0.000" d_score="0.67"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14108" g_stop="14180" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="717" r_length="72" r_score="0.616"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E550484" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5182" e_stop="5542"/>
          <exon e_start="11938" e_stop="12149"/>
          <exon e_start="13750" e_stop="13784"/>
          <exon e_start="14002" e_stop="14047"/>
          <exon e_start="14108" e_stop="14180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACACAATATAGCCTGCAAGAAGAGTAACTATTAATACACATGTTCAAGCTAGAGACTAACTTTAAAATATATATAACAATAACCTACTATAACTATTTAAAGTTCTTTTATAGTATAAACATTTTGTCACCAAGCCCTGAAGACGGTCTTACCAAAAAAATAAGGTAAAGATCGTATATAATAAACCTTTATGATCGAATTATTTTCTAGATTATAGAAAATTAGTGCATCGGACTGCGAGCAATCAATTCAAAAAATTAATAGTTTGCCAAGTGGCATATTGTCATCAGATTAGAAAAACATGGAATTGGGCCTTCTAGAAGTTGAAACTTAAGAAACAAATTAAAGAAGTGGAATAGGAAGAAGCAAAGTTGAGAAGCACTAGTTGCATATGCAAGCAAAGTCTGTTTTCTAGAAGAATGCTCCATTGTTAGTCAATACCTAATTTGCCAAAAAAAAATAATTTAATCAAGTTGACCTAATTAGTAACGAAATCAGCAGTACTATTTATATTCAATTTGTTTTCGAAAGGAGTTAAAAAAGATAAAAACACCTTATTGATTTTATACGTAAATCATTGAGAGTAAGAGCTGAACTATCATTGAATATTGACTAAATCAAATATTTATATAGAAATGCTTCTAGCCGTATTCGTCGATAAAATTTTCATCTACCTAACATAAATAATGATTCTCTTTGTTAACACATAAATTTTTTTTTGATTGACTTTTTACATGAATTCTCACCTTTCAAATCGGTGTAATCAATGTCACGTCCAAGAGGGTGCAGAAGAAGATGGTGTATGTCATGGTTGAAATAAATTAACTTATATGGTAATAGTTTTAACCTTAACTTTTAATCTAACATTAATTTATTTAAATTTGTCAGCTTGAAATTATTTTTTCGCGTGAAGTGTCACACATGACTATATTTTTAAACAAAAAAGAGATTACACATATGATTAAAAATTAATTGAGTTGTACTTCGCTAACTATTGAGTGATAGTTCAGATAGAAAATTCACACTTAATAATTCAAATATAAAACTCAAAAATTGGAATAGTTTAAATAATTTTAACTCTTAAATCTTAAAAGGAAAACTCAAACTCAACAAGATGAATACTATATTTTTATACTAATAATGTGTGTGAGTCTGGGAGTACCTCGATGAATAGGACAAAATGTAGAAAGTGAGGCAGAAGTTGAAAATAATTTGTATATATAAAAATTAGATGCTTTTTATGTGACGGTATGAATATAAGAGTGATTGACAATGAGTGAATTTACGAGAAGAGTGGGTGGATTAAAGAAGTATTAGAGAGAGATAATCAATCATATATGATATAATACAATTTCAACTTATCAAAAAAATAATTTAAAATAAGAGGCTGTAAAATACACAAATTAAAATAAAAGATTAATAGTAATAGTGCATTATCTTTCCATACAAGGAATTGTACTTAATATTACTTTTGTAGTTTCATGTCCTTTTAATTATGTTAGTATTTGATTTTCTTGTACTTCAATAATGTTAGACTTGCTATTTCTTTCTTCTTCTTCTTTTTTTTTTTTTTAATAATATTTCGACATGCTTTCGATAGTATTGTACTGTGATTTATTTGTTATTATTATTTTTGCTTTAAGATTTATTTTTAAATAAAAATCTATTAAAAATAGTTTTTTTATCTTTGAAGGTAGGACTAAAGTATGTTACAAGGCACCGATTAATGCAACAACAATAAAAAAAACAAAAAAAAACATATGTTCCTATTAAGAAAAACTATTTTCATGTTTAGTTAATCAAAATGAGATATTTTTTTATTAAAAACAAGTTCAGGAAAGTATTTAGAATTAATGCTTGACAAACAATACTATTATTAATGCAAAGATTTTCTAATGCACGCATACCTATAGTTAAAAACACAATTGGTCCTTAAAGCTTTTTTCACTTTCTTTAATTTTTGGAGTGTACTTTAATAATTGAATGAAAATATTAAAAATTATGTAATACATATTATTTTTAATTAATATAACAAAACAAATAAT</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACA-TTTATGTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACTTAAATATTATTATTATTTTACGATTTAT.........................................................................................................................................................................................................................AACACTATTA-GAA-ACAAAGATTTTCTCAACCATGAATTAATGAA............................................................AAAATTATGCCAT-AAAATATAAAAAATTTACTCATTTTTCATTGAGCTAATTCATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="12438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5182" g_stop="5542" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12129" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="547" r_length="192" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5182" e_stop="5542"/>
          <exon e_start="11938" e_stop="12129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="12295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5182" g_stop="5542" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12036" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="454" r_length="99" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5182" e_stop="5542"/>
          <exon e_start="11938" e_stop="12036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="12438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5183" g_stop="5542" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12141" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="558" r_length="204" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5183" e_stop="5542"/>
          <exon e_start="11938" e_stop="12141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACACAA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="12428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5183" g_stop="5542" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12128" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="545" r_length="191" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5183" e_stop="5542"/>
          <exon e_start="11938" e_stop="12128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="4893" stop="12355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5183" g_stop="5542" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11938" g_stop="12055" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="472" r_length="118" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5183" e_stop="5542"/>
          <exon e_start="11938" e_stop="12055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGGCCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACATTAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCGTAAAAAGAAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGGTATGGGTATCTTTCTCGCATATCAACCTCTTTCTCCCAAGTGGCTTCTTCGACTGGTCGATTCTTCCATTGAACTTTGATGGATGCAATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAAAATAGCAACAGGCTCCTCCTCATAAGACAAATTCTCATCAAGCAAAACGGAATCCCAACGGATGATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATGTACCTTGGGCTTAGCTTGCCTCTTTTACCAAACCGCATCACCCCTTTCATTGGCGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCTATCTGCATATTCTTTTTGCCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATTTCCTCAGAAGGTCAGTACCCCAAGGTCTAACCTCGAATGCATCAAACCACCCAATGGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGCCTCTCCTTGCAACACTTTATCTCGGATCTGGATCAATTTTTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTAAAAATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTCTAGTCAATGGACGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTTCCCGGATGATACAAAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTTAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAATCATGAGTTGGATAGTTATGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAGAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGGACATTTTGCTTGGTCAAGTTCGTCAGTTGGGAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCTGAAACTCACGGACCACCTAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACATCACAGTTTTGGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTAAAATCCGCAGTTCTGACCTCAACCCCTTCATAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTCCTCGAGCTACAGCCCCAGTGGCTGGCTCAGACGCTTCTTGTCTTGCCGATGTTGGTGTTGGCGCAGTCGTTGTTCTAGTTCTAACCATCCGCGAAAGAGAGTGAAGATGGTCAGATATCAATTTGTATCACCTAGATACCAATTGGATTCAAGTAGTAGCACGAAAGAAGAAAGAAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGCCGCGACTGGCACCCACACTTTCCCCCTGTGTGAGCGAACCAACCAAACCTAAGCCTTAACATTTCAATATACTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATGAAAACCAATTCAATAACTATTATTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGTTAGTCCATGCCGGAACTTCAAGGCGTCAAGACATGAAGAGAAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGACTAGAGTTACTGTTGAGTCAAAGATGACGGCACGCTTGCTGCACTTCACAATTAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTTATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTACGTGTCAGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACTCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGATCCACTAATTCTATGTGTCGGTTCGTGACACCCGTCCCACTAATTCTATGTGTCGGTTCGTGACACCCGTTCCACTAATCTCATCACTTTAGTTCATCAAGCCTTCTTTTATACCAAGGGATCATCAATCTCAGTATCAAGGTAGATTAGGGTTTCTTTCAAGATTAAGATTCAATAGCTTCATCATGCTTACTTTATCACAATTATGAAATCATATTCATACAAGCATACAATTAAGCATATAGAAGGGTTTACAACACTAATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGAATTTCCCAAAGCCTTGTGTTTTTCCATTTCGTTCGTCTCTCTCTATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCAGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTT-TC---TTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="6102" stop="6879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6402" g_stop="6578" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6402" e_stop="6578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7583" stop="8895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7883" g_stop="8595" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7883" e_stop="8595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7583" stop="8778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7883" g_stop="8478" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7883" e_stop="8478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7583" stop="8708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7883" g_stop="8408" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7883" e_stop="8408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7654" stop="8932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7954" g_stop="8633" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7954" e_stop="8633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7654" stop="8612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7954" g_stop="8312" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7954" e_stop="8312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="8738" stop="10059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9038" g_stop="9759" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9038" e_stop="9759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTC--AAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="8741" stop="10008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9041" g_stop="9706" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9041" e_stop="9706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATT-CCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTC--AAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10063" stop="8910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9763" g_stop="9210" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9763" e_stop="9210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="9098" stop="10131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9398" g_stop="9830" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9398" e_stop="9830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10421" stop="9537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10121" g_stop="9837" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10121" e_stop="9837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTC-TTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGATATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10285" stop="11222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10585" g_stop="10922" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10585" e_stop="10922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GATTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAA-CATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="11212" stop="10376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="10674" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="10674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAATCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAACGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGATTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTTATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATG-TTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475363" ref_strand="+" ref_description="SGN-E475363 [cSTB-38-F2]">
      <seq>cattacccaaaagcagcagctcaaatgaagtacgttggcgctctggggaaaacaatggcgttatcactatcttcacgctctctcttcacttcctcctataaatccctttctcctctcaaaaaccccttttcttccttcccaattcgacaatatcgtattctttttgttcttgatccctgcaagtacaacaacaaaactactaggtacaagttgccaagacgtcgtagttctttctctacccatgcttctgccgccctacaagaagctcctgccccaaatgagaaaattgttctcccaactaacgagtcatccgatgggctcctgcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattggaccctggattgataatggtttttattatgattttgatatggagcctttgactgacagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15617" stop="17256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15906" g_stop="16250" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583">
            <donor d_prob="0.942" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16834" g_stop="16956" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E475363" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15906" e_stop="16250"/>
          <exon e_start="16834" e_stop="16956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACCCAAAAGCAGC---TCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGAC</genome_strand>
        <mrna_strand>CATTACCCAAAAGCAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCCTATAAATCCCTTTCTCCTCTCA--A-AAACCCCTTTTCTTCCTTCCCAATTCGACAATATCGTATTCTTTTTGTTCTTGATCCCTGCAAGTACAACAACAA-AAC--TACT-A--GGTACAAGTTGCCAAGACGTCGTAGTTCTTTCTCTACCCATGCTTCTGCCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATTGTTCTCCCAACTAACGAGTCATCCGATGGGCTCCTGCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGACCCTGGATTGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724476" ref_strand="+" ref_description="SGN-E724476 [FC24AH07]">
      <seq>aaagcagctcaaatgaagtacgttggcgctctggggaaaacaatggcgttatcactatcttcacgctctctcttcacttcctcttataaatccatttctcctctcagtagaaaccccttttcttccttcccaattcgtcagtatcgtattctttttgttcttgatccctctaacaacaacaacaacaacaaaactaaccggaacaagttgctgagacgtcgcacttctttctctacccatgcttccaccgccctacaagaagctcctgccccaaatgagaaaatggttctcccaactaacgagtcatcagatgggctacttcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattgggccctggatcgataatggtttttattatgattttgatatggagcctttgactgacagtgacctgaagaggattaagaaggaaatggatcgaattatcagccgaaacttgcctcttgttagagaagaagttagccgggatgaagctcaaagaagaataatgtctatcaacgaaccttacaagatcgaaattttagagagcataaaggaggaaccaattaccatttatcatattggtgatgaatggtgggatctttgtgcgggacctcatgttgaaactacaggaaagattaacagaaaagctattgagcttgaatctgttgctggtgcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15615" stop="19357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15915" g_stop="16250" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16834" g_stop="16980" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="483" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17136" g_stop="17283" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="631" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17284" i_stop="18959" i_length="1676">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18960" g_stop="19057" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="729" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E724476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15915" e_stop="16250"/>
          <exon e_start="16834" e_stop="16980"/>
          <exon e_start="17136" e_stop="17283"/>
          <exon e_start="18960" e_stop="19057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATGGTAAGCTAACTTGTGCTTTTTAGTGATTGTTAGAAAGTTACTCCCTCTGCCTCCCCACAAGGGTCCACTCCCCCTAAAGAACTAAAAAATAGTTTGATCTTGTCAATGAAGCTTTGATTTTTGGTTAGAGAATTGACATCTTAAATTTTCTCTAGGATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTGGTAAGACTTCGATTAATTGCTTCTGTTTAGTTTGAGAAACTTACTACGACGTACTTAATGTCATCCCACAAGTTTAGGAACTTGAATATAAAATATTACTTTAGCATATTGTACATGTTTTCTAACTAACACGATATGAACTTTTACTTTATGGTTGTATATGACTCATAAATGAGATTTGATCATGGGGAGTTAATTGAGAACCATAAACACTATATATTTCAGGACTTCACCCGGTGATTCGTTGAAATGAGTATCTTAAGTGCTCCGAATGATCTCAATAGAAGATTGTGGTATTCCACTTGAGCATTTTTGAGTGTATGAACCTTATCTATCTCTTGAGGATCTACTATTATACATGTTGACCTTAACTTAGTAGCTGTCTTGATGTCATTGTTATTTACAAATCATCATATGGTGGAGTGCTAGAGTAATTCTCGGAGGAAAACTTTTGGTCTTTGCTGCTAATTACATCCTTCCTGAAAGTGTTTCAAGTGGAATTTTCAGTACCCACCCTAGTAATTGTTGCAGGTTGTTCTGAATATATCGTTCTTTTGGTGAATTATATAGTTACTTCTTAATATTGCTAAAACATCAGGTTAAAAAATATTTTTATGTCAAGTATTATATTTCATTCTGTTCTGTGCTAAATTCACTTATACTTGTAACCAAGTCAAATGTTTTCACTTTAAGGGAATTTCATTTCTCGATATAGAAACTTACGTTTGTGGATGGCCAAAGGGATGTCATGGGAAGTGTTCCATGAACAGGTAAGTGAAGTTTCAGAGTTCCATCACAAAGGCTGTTAAGAAAGATATTGGCTCACTTTATGTCATAATGCACGAATTGAATCTAATGCTTAGATGGAAGGATGTAAAATATTGATATTGTAATAGTGCAATGAGTTCTGCAAGTTAGGTTGTTATTACTATTGTTAGTGCTAAAAAGAGAGGGAAACTGAATCTTGTACCTGGACGCCAGATGACTTGAACCTGGCTGGACTCATAGATAGTTGATTCGTAGTAAAATCTTACTTTTAATATTCCTGAACTTCTACCTCTTACTAAAACTTTGCCATTGAAGCCTTGTACCCCACCCTGGAAGCTTTGACAATTTTGCAGAGGTCTGCGGTGTGAGAACATGAGTCGTTAAGGTCAGAGTCAGCCAAATCAACTCTCCGGGATCTGGTCTCAATCCTTGTGGTACCAGATCAAAGTCAATAGTCCTTACCGTGCAAGAATCAAGCTTACATGCTGTTATTGGTGCTAACAATTATTGTTACTATAATACTTTTCAACTAAAAAGTGCTTCAGAAAATGTAGAATATGTGAACTTACTTAAAGAATTTACCAGCTGCTTCTCTAGAACATCATTTTTACAGCATTATTTTAGATATAGTTGACAGATTAGGATTCGATCGAGGAAGGGATTAAGACTTGTTAGAGGTGGACAAAGAAGGTTAAGTTTGGACTTCTCTAGCTAAAATTATCCATCAAAATGTAGGTTTAAGCCAATATTTGCATATCCATCCTTTATAAACCATAAAGCACCCAAGAGAGCTTCATCTCGTTGTTTGCTGAACTTGATCTGATTGTGGAAACATCCACATAAACCTATTGCTTTAACAACAAAGTACATTTTGCCTTTTCTCATGGTCAAATGCTTTCTTTTCGTAGGTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTAC</genome_strand>
        <mrna_strand>AAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG...........................................................................................................................................................GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451649" ref_strand="+" ref_description="SGN-E451649 [cSTS-13-H8]">
      <seq>cctcacgcctctctcttcacttcctcctataaatccctttctcctctcaaaaaccccttttcttccttcccaattcgacaatatcgtattctttttgttcttgatccctgcaagtacaacaacaaaactactaggtacaagttgccaagacgtcgtagttctttctctacccatgcttccgccgccctacaagaagctcctgccccaaatgagaaaattgttctcccaactaacgagtcatccgatgggctccttcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattggaccctggattgataatggtttttattatgattttgatatggagcctttgactgacagggacctgaagaggattaagaaggaaatggatcgaattatcagccgaaacttgcctcttgttagagaagaagttagccgggacgaagctcagagaagaataatgtctatcaatgaaccttacaagatagaaattttagagagcataaaggaggaaccaattacgatatatcatattggtgatgaatggttgggaatctttgtgcgggacctcatgttgaaactacaggaaagattaacaaaaaagctattgagcttgaatctgttgctggtgcttactggagaggagatgtaaagaaaccaatgctccaaaggatttatggcactgcatgggagaatgaggaccaattaaaagcataccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15673" stop="19443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15973" g_stop="16250" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16834" g_stop="16980" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="417" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17136" g_stop="17283" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="565" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17284" i_stop="18959" i_length="1676">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18960" g_stop="19143" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="751" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E451649" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15973" e_stop="16250"/>
          <exon e_start="16834" e_stop="16980"/>
          <exon e_start="17136" e_stop="17283"/>
          <exon e_start="18960" e_stop="19143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACG-CTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATGGTAAGCTAACTTGTGCTTTTTAGTGATTGTTAGAAAGTTACTCCCTCTGCCTCCCCACAAGGGTCCACTCCCCCTAAAGAACTAAAAAATAGTTTGATCTTGTCAATGAAGCTTTGATTTTTGGTTAGAGAATTGACATCTTAAATTTTCTCTAGGATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTGGTAAGACTTCGATTAATTGCTTCTGTTTAGTTTGAGAAACTTACTACGACGTACTTAATGTCATCCCACAAGTTTAGGAACTTGAATATAAAATATTACTTTAGCATATTGTACATGTTTTCTAACTAACACGATATGAACTTTTACTTTATGGTTGTATATGACTCATAAATGAGATTTGATCATGGGGAGTTAATTGAGAACCATAAACACTATATATTTCAGGACTTCACCCGGTGATTCGTTGAAATGAGTATCTTAAGTGCTCCGAATGATCTCAATAGAAGATTGTGGTATTCCACTTGAGCATTTTTGAGTGTATGAACCTTATCTATCTCTTGAGGATCTACTATTATACATGTTGACCTTAACTTAGTAGCTGTCTTGATGTCATTGTTATTTACAAATCATCATATGGTGGAGTGCTAGAGTAATTCTCGGAGGAAAACTTTTGGTCTTTGCTGCTAATTACATCCTTCCTGAAAGTGTTTCAAGTGGAATTTTCAGTACCCACCCTAGTAATTGTTGCAGGTTGTTCTGAATATATCGTTCTTTTGGTGAATTATATAGTTACTTCTTAATATTGCTAAAACATCAGGTTAAAAAATATTTTTATGTCAAGTATTATATTTCATTCTGTTCTGTGCTAAATTCACTTATACTTGTAACCAAGTCAAATGTTTTCACTTTAAGGGAATTTCATTTCTCGATATAGAAACTTACGTTTGTGGATGGCCAAAGGGATGTCATGGGAAGTGTTCCATGAACAGGTAAGTGAAGTTTCAGAGTTCCATCACAAAGGCTGTTAAGAAAGATATTGGCTCACTTTATGTCATAATGCACGAATTGAATCTAATGCTTAGATGGAAGGATGTAAAATATTGATATTGTAATAGTGCAATGAGTTCTGCAAGTTAGGTTGTTATTACTATTGTTAGTGCTAAAAAGAGAGGGAAACTGAATCTTGTACCTGGACGCCAGATGACTTGAACCTGGCTGGACTCATAGATAGTTGATTCGTAGTAAAATCTTACTTTTAATATTCCTGAACTTCTACCTCTTACTAAAACTTTGCCATTGAAGCCTTGTACCCCACCCTGGAAGCTTTGACAATTTTGCAGAGGTCTGCGGTGTGAGAACATGAGTCGTTAAGGTCAGAGTCAGCCAAATCAACTCTCCGGGATCTGGTCTCAATCCTTGTGGTACCAGATCAAAGTCAATAGTCCTTACCGTGCAAGAATCAAGCTTACATGCTGTTATTGGTGCTAACAATTATTGTTACTATAATACTTTTCAACTAAAAAGTGCTTCAGAAAATGTAGAATATGTGAACTTACTTAAAGAATTTACCAGCTGCTTCTCTAGAACATCATTTTTACAGCATTATTTTAGATATAGTTGACAGATTAGGATTCGATCGAGGAAGGGATTAAGACTTGTTAGAGGTGGACAAAGAAGGTTAAGTTTGGACTTCTCTAGCTAAAATTATCCATCAAAATGTAGGTTTAAGCCAATATTTGCATATCCATCCTTTATAAACCATAAAGCACCCAAGAGAGCTTCATCTCGTTGTTTGCTGAACTTGATCTGATTGTGGAAACATCCACATAAACCTATTGCTTTAACAACAAAGTACATTTTGCCTTTTCTCATGGTCAAATGCTTTCTTTTCGTAGGTGATGAATGG-TGGG-ATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAGAGGAGATGTAAAGAAACCAATGCTCCAAAGGATTTATGGCACTGCATGGGAGAATGAGGACCAATTAAAAGCATACCTTCA</genome_strand>
        <mrna_strand>CCTCACGCCTCTCTCTTCACTTCCTCCTATAAATCCCTTTCTCCTCTCA--A-AAACCCCTTTTCTTCCTTCCCAATTCGACAATATCGTATTCTTTTTGTTCTTGATCCCTGCAAGTACAACAACAA-AAC--TACT-A--GGTACAAGTTGCCAAGACGTCGTAGTTCTTTCTCTACCCATGCTTCCGCCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATTGTTCTCCCAACTAACGAGTCATCCGATGGGCTCCTTCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGACCCTGGATTGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGGGACCTGAAGAGGATTAAGAAGGAAATG...........................................................................................................................................................GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGACGAAGCTCAGAGAAGAATAATGTCTATCAATGAACCTTACAAGATAGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACGATATATCATATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAATGGTTGGGAATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAAAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAGAGGAGATGTAAAGAAACCAATGCTCCAAAGGATTTATGGCACTGCATGGGAGAATGAGGACCAATTAAAAGCATACCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341346" ref_strand="+" ref_description="SGN-E341346 [cTOE-22-N12]">
      <seq>tcttcacttcctcttataaatccatttctcctctcagtagaaaccccttttcttccttcccaattcgtcagtatcgtattctttttgttcttgatccctctaacaacaacaacaacaacaaaactaaccggaacaagttgctgagacgtcgcacttctttctctacccatgcttccaccgccctacaagaagctcctgccccaaatgagaaaatggttctcccaactaacgagtcatcagatgggctacttcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattgggccctggatcgataatggtttttattatgattttgatatggagcctttgactgacagtgacctgaagaggattaagaaggaaatggatcgaattatcagccgaaacttgcctcttgttagagaagaagttagccgggatgaagctcaaagaagaataatgtctatcaacgaaccttacaagatcgaaattttagagagcataaaggaggaaccaattaccatttatcatattggtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15685" stop="17589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15985" g_stop="16250" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16834" g_stop="16980" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="413" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17136" g_stop="17283" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="561" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E341346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15985" e_stop="16250"/>
          <exon e_start="16834" e_stop="16980"/>
          <exon e_start="17136" e_stop="17283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATGGTAAGCTAACTTGTGCTTTTTAGTGATTGTTAGAAAGTTACTCCCTCTGCCTCCCCACAAGGGTCCACTCCCCCTAAAGAACTAAAAAATAGTTTGATCTTGTCAATGAAGCTTTGATTTTTGGTTAGAGAATTGACATCTTAAATTTTCTCTAGGATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG</genome_strand>
        <mrna_strand>TCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG...........................................................................................................................................................GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401149" ref_strand="+" ref_description="SGN-E401149 [PPC-3-A8]">
      <seq>gaatatgtttgatcagatggagattgaggaagagctttttcagctacggccaatgaactgcccttatcatgtattgatctataagaggcagttacactcttatcgggattttccgatcagagttgcagagttgggaacagtgtataggtatgagttatctggaagcttacatgggcttttccgtgtaagaggttttactcaggatgatgcacacatcttctgtttagaggatcaaattanagatgaaatcaggggcgttttagatctgaccgaggaaatattacagcaatttggttttgacaagtatgaggtgaacctttcaacaaggccagaaaaagctgttggagatgatgagatttgggaaaaagcaacatttgcacttaaggatgctttagaagataaaggntggagctatcaaatagatgatggtggtggggccttctatggtccaagattgatctgaaaattgaggatgctctttggaggaagtggcaatgctcaactatacaggttgattttcattttacccagcgctttgacattacatatgttgattcaaatcaagagaggaagcgacctatcatgacccatagagcagntcttggatctttggagcgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="19224" stop="22596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19524" g_stop="19725" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19726" i_stop="21646" i_length="1921">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21647" g_stop="21955" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="510" r_length="308" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21956" i_stop="22183" i_length="228">
            <donor d_prob="0.774" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22184" g_stop="22296" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="623" r_length="113" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E401149" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19524" e_stop="19725"/>
          <exon e_start="21647" e_stop="21955"/>
          <exon e_start="22184" e_stop="22296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGTTTGATCAGATGGAGATTGAGGAAGAGCTTTTTCAGCTTCGGCCAATGAACTGCCCTTATCATGTATTGATCTATAAGAGGCAGTTACACTCTTATCGGGATTTTCCAATCAGAGTTGCAGAGTTGGGAACAGTGTATAGGTATGAGTTATCCGGAAGCTTACATGGGCTTTTCCGTGTAAGAGGTTTTACTCAGGTGCGTTCCAAGTATAAAATATTTATTTCCTCAAGTCTCAACATCTGTATCCTTGATTAGAACTATCATCCCTAAGAGGGAGCGGTTACTGATCAATTGTCTGAAAGAAGAAGGAGTGAAGGGTGGTACAAAATGGGTCTTGCATTTTATTTGTGTTTTCCTGTGCAGTAACCACAATGACCTATGTGTTATGCAACAATTAATTTGAGTAAATGAAGATGGATTTTCTAGAAGCCCATTGTTGTGGAGCACAAACATACTTGCTGTAGTTGATATAAGTGGTCTCTTTTCTCCTCTTGGAGGGCTAGGATTTTGTCTTGGTCTGCTTTGGGTTCTCTGGGACATAGAGAACATACCTAATGTGGTTGAACAAACCAGTATGTTCTCTCTTTAGGGGTTTTGTTTACCATTGAGTCTCAACATCTGAACTTTGTTATTGGCAGAAACATTTGGTATTTTCCAGTAAACATGAAAAGTTTCTCAATTAAGAGAACTGCAAATCATTTATATTGGTTTTAGTTTCTTTTTATTGTGAAATTTTTCATTGGGCATCCGACGGTAAAAAGAAAATGATTCAGTTCCAGAGCTAAAGATCATAGTTCTCGAACGAGCAATTGAAAAGATTCTGGATCATCTTCGGGATAAGGTATTATTCTCCCAATGATCGTAGTACCGTTTACGTCCTATCGAGCTCCAATATGATCCAATTTATAAGTAAGCATCTCTTGTAAAATGTGAGCAACCCCAAACCCTTCTAGATCCCAAACCTCAGTTTCTTGTCAGATCCCAGAGGAGTGGTGTTTATGACACCAGAAAGACTAGCAATTTCTTCCAGATGAAACATTAGTATGCCCCATAAAAGTTCCATCACCCGCGAAACATATACAAAGAACTGCCTGAGAAGGGAGAGAGGAAAACAACAAACACTAACCTGTACACATAAAAGTAGTGCCTGCTATAAATGAGGACAGTCGGACACTTCTTTAGATTACTTTAATTTTCTTTTTCTTGCCCCTATACTAATTCAGGGGCAGCCTGCTTCCGCCACAAGGCTACATGCATAAGCCAAGTAATCCTACTCACAGTGGCTGGAGTAGATCACATTAGATTTTAGAGTGTTGTAGTTGGGATAGGAACTTAAAATCTCTAGGTTGTACCATTGTACTCCTTTGCCTCCACCACTAGGCCGTCCTCTTAAAGACCAGACTACTTTGATTTGCTCACTTTTTTTGGTCATTATTGTTTAATGTTCCTTCCATCTTTTCCGGTCAGCACTTAACTTGGTCCAAAGATTTCCCCTTCTGCTTGTTGCTTGTCACACCTTCCTTGAGAATTATGCGCAATGCAGACATTCCTCATCGTCCCCAAAACTATATATCCAGAATTTCTGGAATGTTCATAATTCTGCAATCTGACTGTGGAGCCAACCCCCATTATCTCCTCTATTCATACCAAGGACTTTCCAAGAGGAGCACCTAAAAAATTAAAGAGATTTGACTGAGTGCATTGCTTGTGATGTTGTAGAGTTTCAGCTTTTTAACCTGCATAACTTAGATATCTTACATTATGTTATACTTCAGCCTTTTGTAAAAGACTTTTATTGTACTCTTTTACCCTGTATTACAGGTGGTGGTGGGGAGTTGTTAACTTGTTAACTTTTTTACCTTTTTGTTATCTTCTCCACTGCTGTAAGAGATTTTTGTTTCCACATTTATAATTATAATCATTAAAACATATTGCAATGTACAGTCGTCTTAGTAGTATGCTTGTCCTCTCTCAGAAAAGGACGAGAAATATTGAATAGTATGAGATAATTCAGATAAAATGTCTGCTTTCAAGTGTTGATTCTTTCATCCAGAAACTCTAAAGTAGTAGCAGCTTGCATTACTGTTATCTGATACCCCCTATATTGATTTTGCAGGATGATGCACACATCTTCTGTTTAGAAGATCAAATTAAAGATGAAATCAGGGGTGTTTTAGATCTGACAGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAAGTGAACCTCTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATCTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAGGCATGTTTTGATCTTGGTCTCCTTTTCCATTGGCCTGTATGCTCCATGGGACCACTCTCCTCTGTCTTCTTGTCTTCTTGGTCCCTCTGCTCGCTTTTTTCTAAAGTCTAATCAAGTTTGCTTTAGTCTTGACCTCTCGCAAACTTGAAAGTGTTTTTTCTATTCATTTTATTTGTCCAAGCTCCTTAGCTTCTTTGTAATCCTTCATTGACACATGAGCTTCTACAGGTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTCGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTT</genome_strand>
        <mrna_strand>GAATATGTTTGATCAGATGGAGATTGAGGAAGAGCTTTTTCAGCTACGGCCAATGAACTGCCCTTATCATGTATTGATCTATAAGAGGCAGTTACACTCTTATCGGGATTTTCCGATCAGAGTTGCAGAGTTGGGAACAGTGTATAGGTATGAGTTATCTGGAAGCTTACATGGGCTTTTCCGTGTAAGAGGTTTTACTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGCACACATCTTCTGTTTAGAGGATCAAATTANAGATGAAATCAGGGGCGTTTTAGATCTGACCGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAGGTGAACCTTTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATTTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGNTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCC-AAGATTGATCTGAAAATTGAGGATGCTCTTTGGAGGAAGTGGCAATGCTCAACTATACAG....................................................................................................................................................................................................................................GTTGATTTTCATTTTACCCAGCGCTTTGACATTACATATGTTGATTCAAATCAAGAGAGGAAGCGACCTATCATGACCCATAGAGCAGNTCTTGGATCTTTGGAGCGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608205" ref_strand="+" ref_description="SGN-E608205 [24186]">
      <seq>gtctgcttcaagtgttgattctttcatccagaaactcttaattagtagcagcttgcattactgttatctgataccccctatattgattttgcaggatgatgcacacatcttctgtttagaggatcaaattaaagatgaaatcaggggcgttttagagctgaccgaggaaatattacagcaatttggttttgacaagtatgaggtgaacctttcttcaaggccagaaaaagctgttggagatgatgagatttgggaaaaagcaacatttgcacttaaggatgctttagaagataaaggttggagctatcaaatagatgatggtggtggggccttctatggtccaaagattgatctgaaagttgaggatgctcttggaaggaagtggcaatgctcaactatacaggttgatttcaatttaccccagcgctttgacattacatatgttgattcaaatcaagagaggaagcgacctatcatgatccatagagcagttcttggatctttggagcgcttttttggtgttctcatagagaattatgctggtgattttccactttggctttctcccatccaagctcgagttttaccagttactgatgcacaggtaatcaaatacttatttgactaattcttgtctccatttacataaatacatgtctagtattttaccctgacgaaagatgcttaaactattctaactcctggaagtcatcctctaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="21252" stop="22803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21552" g_stop="21955" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21956" i_stop="22183" i_length="228">
            <donor d_prob="0.774" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22184" g_stop="22503" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="724" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E608205" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21552" e_stop="21955"/>
          <exon e_start="22184" e_stop="22503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCTTTCAAGTGTTGATTCTTTCATCCAGAAACTCTAAAGTAGTAGCAGCTTGCATTACTGTTATCTGATACCCCCTATATTGATTTTGCAGGATGATGCACACATCTTCTGTTTAGAAGATCAAATTAAAGATGAAATCAGGGGTGTTTTAGATCTGACAGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAAGTGAACCTCTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATCTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAGGCATGTTTTGATCTTGGTCTCCTTTTCCATTGGCCTGTATGCTCCATGGGACCACTCTCCTCTGTCTTCTTGTCTTCTTGGTCCCTCTGCTCGCTTTTTTCTAAAGTCTAATCAAGTTTGCTTTAGTCTTGACCTCTCGCAAACTTGAAAGTGTTTTTTCTATTCATTTTATTTGTCCAAGCTCCTTAGCTTCTTTGTAATCCTTCATTGACACATGAGCTTCTACAGGTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTCGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCTCAGGTAATC-AATACTCTTTTGACTAATTCTCGTCTCCATTTGCATAAATACATGTTTAGTATTTTACCCTGACGAGAGATGCTTACACTACACTAACTCCTGGAAGTCGCCCTTTAACATAA</genome_strand>
        <mrna_strand>GTCTGC-TTCAAGTGTTGATTCTTTCATCCAGAAACTCTTAATTAGTAGCAGCTTGCATTACTGTTATCTGATACCCCCTATATTGATTTTGCAGGATGATGCACACATCTTCTGTTTAGAGGATCAAATTAAAGATGAAATCAGGGGCGTTTTAGAGCTGACCGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAGGTGAACCTTTCTTCAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATTTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAGTTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAG....................................................................................................................................................................................................................................GTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTTGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCACAGGTAATCAAATACTTATTTGACTAATTCTTGTCTCCATTTACATAAATACATGTCTAGTATTTTACCCTGACGAAAGATGCTTAAACTATTCTAACTCCTGGAAGTCATCCTCTAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472632" ref_strand="+" ref_description="SGN-E472632 [cSTB-29-M6]">
      <seq>gtgaacctttcaacaaggccagaaaaagctgttggagatgatgagatttgggaaaaagcaacatttgcacttaaggatgctttacaagataagggttggagctatcaaatagatgatggtggtggggccttctatggtccaaagattgatctgaaaattgaggatgctcttggaaggaagtggcaatgctcaactatacaggttgatttcaatttaccccagcgctttgacattacatatgttgattcaaatcaagagaggaagcgacctatcatgatccatatagcagttcttggatctttggagcgcttttttggtgttctcatagagaattatgctggtgattttccactttggctttctcccatccaagctcgagttttaccagttactgatgcgcagctccagtactgcaatgaagtaggcaagaaactaaaagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="21455" stop="23015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21755" g_stop="21955" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21956" i_stop="22183" i_length="228">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22184" g_stop="22384" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="402" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22385" i_stop="22674" i_length="290">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22675" g_stop="22715" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="443" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E472632" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21755" e_stop="21955"/>
          <exon e_start="22184" e_stop="22384"/>
          <exon e_start="22675" e_stop="22715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCTCTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATCTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAGGCATGTTTTGATCTTGGTCTCCTTTTCCATTGGCCTGTATGCTCCATGGGACCACTCTCCTCTGTCTTCTTGTCTTCTTGGTCCCTCTGCTCGCTTTTTTCTAAAGTCTAATCAAGTTTGCTTTAGTCTTGACCTCTCGCAAACTTGAAAGTGTTTTTTCTATTCATTTTATTTGTCCAAGCTCCTTAGCTTCTTTGTAATCCTTCATTGACACATGAGCTTCTACAGGTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTCGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCTCAGGTAATCAATACTCTTTTGACTAATTCTCGTCTCCATTTGCATAAATACATGTTTAGTATTTTACCCTGACGAGAGATGCTTACACTACACTAACTCCTGGAAGTCGCCCTTTAACATAATTTGTGGTTCTATTTGAGTGTAGAGTACATCTTGATCCATTTCATTTTCATCAAGTAAAAAACTAGCACAAGGCTTCATAATTTCTTCTATATTTTAATCTGTGAAATTTGCTTCTGGTGTTATATATATATGGTGTCTCATACTGACTTATGAGAGCATTATGTTCACAGCTCCAGTACTGCAATGAAGTAGTCAAGAAACTAAAAGCTAG</genome_strand>
        <mrna_strand>GTGAACCTTTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATTTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTACAAGATAAGGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAG....................................................................................................................................................................................................................................GTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTTGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATATAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCGCAG..................................................................................................................................................................................................................................................................................................CTCCAGTACTGCAATGAAGTAGGCAAGAAACTAAAAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429990" ref_strand="+" ref_description="SGN-E429990 [STM-52-P22]">
      <seq>caaacttttttgaaaagaatatggaatatttattatggagtatgagaaaatgaaaatgatacatgaatgtatacaaaaatattgtaaagtaaccaatactaaatccccaatgtatggagtatatcaaaaccaataagaaaaaacagatgtaccatgatgttcaacattaatttaacagaacaagacatcatttccttacaagaaaaacatcaagaatccaccaccaattgccaaaaccaaatgtttcaaaatgccccagctcatcatcttgtgagaagctgatggtgacgatgaatcaggcgatgctggtgctctagctttgcctgtttgatcagcagctggactatcagcagtaggggcgatatctgttactggtgctggagctggagctggcattggtggtaaatctgtcccgaatatggcttcaggaagaagtaccttgtccacctgataaacagcaactggataagtggtgcgaacagcgctgctaactttagtcctagaccatcctgagttaaggtgaacggtcccagagtcatcggtgaagttcaaggagtataagtttcctccagcaaaggtgttaatagggctaacatcactaaggttcttgaaatcagctagactatagtaatgtggcaatgcatggaaaaggcaaagggacttgagttgttctgaggtaagattggaaagtgagggctttttcagtgaggtaaaggccgagtctttgggaaacaaaagtgtgatcccttcttctgtgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="24674" stop="26018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24980" g_stop="25718" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="762" r_length="738" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E429990" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24980" e_stop="25718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGAATATGGAGTATGAGAAAATG-AAATGATACATGAATGTATACAAAAATATTGTGAAGTAACCAATACTAAATCCCCAATGTGTGGAGTATATCAAAACCAATAAGAAAAAACAGATGTACCATGATGTTCAACATTAATTTAACAGAATAAGACATCATTTTTCATTACAAGAAAAACATCAAGAATCCACCACCAATTGCCAAAACCAAATGTTTCAAAATGCCCCAGCTCATCATCTTGTGAGAAGCTGATGGTGACGATGAATCAGGCGATGCTGGTGCTCTAGCTTTGCCTGTTTGATCAGCAGCTGGACTATCAGCAGTAGGGGCGATATCCGTTACTGGTGCTGGTGCTGGAGCTGGCATTGGTGGTAAATCCGTCCCGAATATGGCTTCAGGAAGAAGTACCTTGTCCACCTGATAAACAGCAACTGGATAAGTGGTGCGAACAGCGCTGCTAACTTTAGTCCTAGACCATCCTGAGTTAAGATGAACGGTCCCAGAGTCATCGGTGAAGTTCAAAGAGTATAAGTTCCCTCCAGCCAAGGTATTAATAGGGCTAACATCACTAAGGTTCTTGAAATCAGCTAGACTATAGTAATGTGGCAATGCGTGGAAAAGGCAAAGGGACTTAAGTTGTTCTGAGGTAAGATTGGAAAGTGAGGGCTTTTTCAGTGAGGTAAAGGCTGAGTCTTTAGGAACAAAAAGTGTGATCCCTTCTTCTGTATTGTT</genome_strand>
        <mrna_strand>AATATTTATTATGGAGTATGAGAAAATGAAAATGATACATGAATGTATACAAAAATATTGTAAAGTAACCAATACTAAATCCCCAATGTATGGAGTATATCAAAACCAATAAGAAAAAACAGATGTACCATGATGTTCAACATTAATTTAACAGAACAAGACATCA--TTTCCTTACAAGAAAAACATCAAGAATCCACCACCAATTGCCAAAACCAAATGTTTCAAAATGCCCCAGCTCATCATCTTGTGAGAAGCTGATGGTGACGATGAATCAGGCGATGCTGGTGCTCTAGCTTTGCCTGTTTGATCAGCAGCTGGACTATCAGCAGTAGGGGCGATATCTGTTACTGGTGCTGGAGCTGGAGCTGGCATTGGTGGTAAATCTGTCCCGAATATGGCTTCAGGAAGAAGTACCTTGTCCACCTGATAAACAGCAACTGGATAAGTGGTGCGAACAGCGCTGCTAACTTTAGTCCTAGACCATCCTGAGTTAAGGTGAACGGTCCCAGAGTCATCGGTGAAGTTCAAGGAGTATAAGTTTCCTCCAGCAAAGGTGTTAATAGGGCTAACATCACTAAGGTTCTTGAAATCAGCTAGACTATAGTAATGTGGCAATGCATGGAAAAGGCAAAGGGACTTGAGTTGTTCTGAGGTAAGATTGGAAAGTGAGGGCTTTTTCAGTGAGGTAAAGGCCGAGTCTTTGGGAAACAAAAGTGTGATCCCTTCTTCTGTGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465408" ref_strand="+" ref_description="SGN-E465408 [cPRO-21-C19]">
      <seq>ctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgcttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtccccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaaagaaatgatgtcttattctgttaaattaatgttgaacatcatgggacatctgttttttcttattggttttgatatactccatacattggggatttagtatgggttactttacaatatttttgtatacattcatgtatcattttcattttctcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="25984" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25684" g_stop="24987" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E465408" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25684" e_stop="24987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCATGTATCA-TTTCATTTTCTCATACTCCATATT</genome_strand>
        <mrna_strand>CTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCCCCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAA--AGAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGGACATCTGTTTTTTCTTATTGGTTTTGATATACTCCATACATTGGGGATTTAGTATGGGTTACTTTACAATATTTTTGTATACATTCATGTATCATTTTCATTTTCTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700235" ref_strand="+" ref_description="SGN-E700235 [FA12CC02]">
      <seq>caagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtgaattcttgatgtttttctgtaatgaaaaatgatgtcttattctgttaaataatggtgaacatcatggtacatctgttttttcttatgggctttgatatactccacacattggggaatttaatattggttacttcacaatatttttggaaacattcatgtatcattttcttttccccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26978" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26678" g_stop="26641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25017" g_length="948"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="985" r_length="947" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1005" polyA_stop="1014"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E700235" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>986</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26678" e_stop="26641"/>
          <exon e_start="25964" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGG-ATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCAT</genome_strand>
        <mrna_strand>CAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGAATTCTTGATGTTTTTC-TGTAATGAAAAATGATGTCTTATTCTGTTAAA-TAATGGTGAACATCATGGTACATCTGTTTTTTCTTATGGGCTTTGATATACTCCACACATTGGGGAATTTAATATTGGTTACTTCACAATATTTTTGGAAACATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700504" ref_strand="+" ref_description="SGN-E700504 [FA13BC08]">
      <seq>tcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcatttttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtcttattctgttaaattaatgntgaacatcatggtacatctgttttttcttattggtttgatatactccacacattggggatttagtattggtaacttccacataattttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26970" stop="24722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26670" g_stop="26641" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25017" g_length="948"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="978" r_length="948" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E700504" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26670" e_stop="26641"/>
          <exon e_start="25964" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCA-TTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCAT</genome_strand>
        <mrna_strand>TCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGNTGAACATCATGGTACATCTGTTTTTTCTTATTGG-TTTGATATACTCCACACATTGGGGATTTAGTATTGGTAACTTCCACATAATTTTGTATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458853" ref_strand="+" ref_description="SGN-E458853 [cPRO-32-J3]">
      <seq>accttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacagatttaccaccaatgccagctccagctccagcaccagtaacagatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaaggaaatgatgtcttgttctgttaaattaatgttgaacatcatggtacatctgttttttcttattggttttgatatactccatacattggggatttagtattggttactttacaatatttttgtatacattcatgtatcattttcattttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="25777" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25477" g_stop="25017" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="490"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E458853" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25477" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCAT</genome_strand>
        <mrna_strand>ACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACAGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACAGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAA-G-GAAATGATGTCTTGTTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCATACATTGGGGATTTAGTATTGGTTACTTTACAATATTTTTGTATACATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458865" ref_strand="+" ref_description="SGN-E458865 [cPRO-32-L3]">
      <seq>accttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacagatttaccaccaatgccagctccagctccagcaccagtaacagatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaaggaaatgatgtcttgttctgttaaattaatgttgaacatcatggtacatctgttttttcttattggttttgatatactccatacattggggatttagtattggttactttacaatatttttgtatacattcatgtatcattttcattttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="25777" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25477" g_stop="25017" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="490"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E458865" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25477" e_stop="25017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCAT</genome_strand>
        <mrna_strand>ACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACAGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACAGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAA-G-GAAATGATGTCTTGTTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCATACATTGGGGATTTAGTATTGGTTACTTTACAATATTTTTGTATACATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699740" ref_strand="+" ref_description="SGN-E699740 [FA11AD01]">
      <seq>ctcatcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgccctattctgttaaattaatgttgaacatcatgggacatctgtttttttcttatgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26960" stop="24781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26660" g_stop="26641" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25081" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="905" r_length="885" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E699740" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26660" e_stop="26641"/>
          <exon e_start="25964" e_stop="25081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTG-TTTTTTCTTATTGGTTT</genome_strand>
        <mrna_strand>CTCATCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGCCCTATTCTGTTAAATTAATGTTGAACATCATGGGACATCTGTTTTTTTCTTATGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714197" ref_strand="+" ref_description="SGN-E714197 [FB10DB07]">
      <seq>atatattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtcttattctgttaaattaatgttgaacatcatggtacatctgttttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26077" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25777" g_stop="25089" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="700"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E714197" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25777" e_stop="25089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTT</genome_strand>
        <mrna_strand>ATATATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714785" ref_strand="+" ref_description="SGN-E714785 [FB12BG02]">
      <seq>agcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtcttattcgtgtaaattaatgttgaacatcatggtacatctgttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26976" stop="24791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26676" g_stop="26641" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25091" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="910" r_length="874" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E714785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26676" e_stop="26641"/>
          <exon e_start="25964" e_stop="25091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTC</genome_strand>
        <mrna_strand>AGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCGTGTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620092" ref_strand="+" ref_description="SGN-E620092 [70789]">
      <seq>aactagtggatcccccggcctgcaggttaagaaaaaacagatgtaccatgatgttcaacattaatttaacagaataagacatcattttccttacaagaaaaacatcaagaatccaccaccaattgccaaaaccaaatgtttcaaaatgccccagctcatcatcttgtgagaagctgatggggacgatgaatcaggcgatgctggtgctctagctttgcctgtttgatcagcagctggactatcagcagtaggggcgatatccgttactggtgctggtgctggagctggcattggtggtaaatccgtcccgaatatggcttcaggaagaagcaccttgtccacctgataaacagcaactggataagtggtgcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="24788" stop="25736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25092" g_stop="25436" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="375" r_length="344" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E620092" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25092" e_stop="25436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAGATGTACCATGATGTTCAACATTAATTTAACAGAATAAGACATCATTTTTCATTACAAGAAAAACATCAAGAATCCACCACCAATTGCCAAAACCAAATGTTTCAAAATGCCCCAGCTCATCATCTTGTGAGAAGCTGATGGTGACGATGAATCAGGCGATGCTGGTGCTCTAGCTTTGCCTGTTTGATCAGCAGCTGGACTATCAGCAGTAGGGGCGATATCCGTTACTGGTGCTGGTGCTGGAGCTGGCATTGGTGGTAAATCCGTCCCGAATATGGCTTCAGGAAGAAGTACCTTGTCCACCTGATAAACAGCAACTGGATAAGTGGTGCGAAC</genome_strand>
        <mrna_strand>AAAAAACAGATGTACCATGATGTTCAACATTAATTTAACAGAATAAGACATCA-TTTTCCTTACAAGAAAAACATCAAGAATCCACCACCAATTGCCAAAACCAAATGTTTCAAAATGCCCCAGCTCATCATCTTGTGAGAAGCTGATGGGGACGATGAATCAGGCGATGCTGGTGCTCTAGCTTTGCCTGTTTGATCAGCAGCTGGACTATCAGCAGTAGGGGCGATATCCGTTACTGGTGCTGGTGCTGGAGCTGGCATTGGTGGTAAATCCGTCCCGAATATGGCTTCAGGAAGAAGCACCTTGTCCACCTGATAAACAGCAACTGGATAAGTGGTGCGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708263" ref_strand="+" ref_description="SGN-E708263 [FA35BB10]">
      <seq>cctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtcttattctgttaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26974" stop="24822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26674" g_stop="26641" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25122" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="877" r_length="843" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E708263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26674" e_stop="26641"/>
          <exon e_start="25964" e_stop="25122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTA</genome_strand>
        <mrna_strand>CCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700635" ref_strand="+" ref_description="SGN-E700635 [FA13CH02]">
      <seq>gaggctcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgttttcttgtaatgaaaaatgatgtcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26980" stop="24834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26684" g_stop="26641" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25134" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="874" r_length="830" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E700635" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26684" e_stop="26641"/>
          <exon e_start="25964" e_stop="25134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTAT</genome_strand>
        <mrna_strand>GAGGCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATG-TTTTCTTGTAATGAAAAATGATGTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708502" ref_strand="+" ref_description="SGN-E708502 [FA35DG07]">
      <seq>ctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26973" stop="24838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26673" g_stop="26641" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25138" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="860" r_length="827" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E708502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26673" e_stop="26641"/>
          <exon e_start="25964" e_stop="25138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTC</genome_strand>
        <mrna_strand>CTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556822" ref_strand="+" ref_description="SGN-E556822 [cTSD-4-L16]">
      <seq>tcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26979" stop="24865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26679" g_stop="26641" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25165" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="839" r_length="800" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E556822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26679" e_stop="26641"/>
          <exon e_start="25964" e_stop="25165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGAT</genome_strand>
        <mrna_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556820" ref_strand="+" ref_description="SGN-E556820 [cTSD-4-L14]">
      <seq>tcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26979" stop="24882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26679" g_stop="26641" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25182" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="822" r_length="783" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E556820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26679" e_stop="26641"/>
          <exon e_start="25964" e_stop="25182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATT</genome_strand>
        <mrna_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578487" ref_strand="+" ref_description="SGN-E578487 [85605]">
      <seq>ctttctctcttcagcttctctgtttgcaatgggtcagtgagtatatatcaatgactaagtgaaaatgggctacagcaggtttcttatagtaagtagtctacttctagtcttccaattgtcaactgtagtcgcaaaaggcaaagcgattggatctccaatcatggctccagcaccagcgagccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcagcctttacctcactgaaaaatccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgtctagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccatttatccagtggctgtcaatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagctccagcaccagtaacatatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcacccatcagcttctcacaagatgatgagctggggcatttgaaacatttggtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26252" stop="24886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25964" g_stop="25186" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="827" r_length="779" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E578487" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25964" e_stop="25186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGC-A-CCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGT-TAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCA-CCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGC</genome_strand>
        <mrna_strand>CAATGACTAAGT--GAAAATGGGCTACAGCAGGTTTCTTATAGTAAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCAAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCGAGCCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCAGCCTTTACCTCACTGAAAAATCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTCTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCATTTATCCAGTGGCTGTCAATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACATATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCCATCAGCTTCTCACAAGATGATGAGCTGGGGCA-TTTGAAACATTTGG-TTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556011" ref_strand="+" ref_description="SGN-E556011 [cTSD-2-C11]">
      <seq>tcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaagtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26979" stop="24887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26679" g_stop="26641" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25187" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="817" r_length="778" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E556011" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26679" e_stop="26641"/>
          <exon e_start="25964" e_stop="25187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGG</genome_strand>
        <mrna_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAAGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465601" ref_strand="+" ref_description="SGN-E465601 [cPRO-21-L17]">
      <seq>cttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctacaccagggttcttattgtcagtagtctacttctagtcttccaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcggcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaacacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacagatttaccaccaatgccagctccagctccagcaccagtaacagatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="24928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26669" g_stop="26641" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="48" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25228" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="781" r_length="733" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E465601" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26669" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCA</genome_strand>
        <mrna_strand>CTTTTCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACACCAGGGTTCTTATTGTCAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCGGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAACACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACAGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACAGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707380" ref_strand="+" ref_description="SGN-E707380 [FA32DD04]">
      <seq>ccttttgctctcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagttaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26989" stop="24936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26689" g_stop="26641" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25236" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="779" r_length="730" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E707380" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26689" e_stop="26641"/>
          <exon e_start="25964" e_stop="25236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAG-TAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCA</genome_strand>
        <mrna_strand>CCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698635" ref_strand="+" ref_description="SGN-E698635 [FA07AE02]">
      <seq>cccgttcagcttctctgtttaaggggtcagtgagtgtgaaaacgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26270" stop="24948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25964" g_stop="25248" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="740" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E698635" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25964" e_stop="25248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCA</genome_strand>
        <mrna_strand>GGGTCAGTGAGTGTGAAAACGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451512" ref_strand="+" ref_description="SGN-E451512 [cSTS-12-P20]">
      <seq>gggaggagtgagtttatatcaggactaagtgaaaatgggctacaccagggttcttattgttagtagtctacttctagtcttccaattgtcaactgtagtcgcaaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagctccagcaccagtaacagatatcgcccctactgcntgatagtcccagctgctgatcaaacaggcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26252" stop="24972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="25272" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="711" r_length="684" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E451512" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="25272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGC-TGATAGT-CCAGCTGCTGATCAAACAGGCAAAGCT</genome_strand>
        <mrna_strand>AGTGAAAATGGGCTACACCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCAAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACAGATATCGCCCCTACTGCNTGATAGTCCCAGCTGCTGATCAAACAGGCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460075" ref_strand="+" ref_description="SGN-E460075 [cPRO-29-J14]">
      <seq>ctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggattaagtgaaaatgggctactccagggttcttattgttagtagtctacttctagtctttcaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggcctttccatacattccttaactaccttgtatcaacaaaagtcatcgagactttccaagcccaagctaacaacacagaagaagggatcacactttttgttcctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgcttcttcctgaagccatattcgggacggatttacaccaatggcagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="24984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="26641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="55" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25284" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="731" r_length="676" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E460075" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAA</genome_strand>
        <mrna_strand>CTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--A-TTAA-GTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTTCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTCCATACATTCCTTAACTACCTTGTATCAACAAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTCTTCCTGAAGCCATATTCGGGACGGATTTA-CACCAATGGCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429989" ref_strand="+" ref_description="SGN-E429989 [STM-52-P22]">
      <seq>ctaaactccatacccttttgctctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctacaccagggttcttattgtcagtagtctacttctagtcttccaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcggcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaacacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaaagcatattcgggacagatttaccaccaatgccagctccagctccagcaccagtaacagatatcgcccctactgctgatagtccagctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="27002" stop="24987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26702" g_stop="26641" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="77" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25287" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="751" r_length="674" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E429989" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26702" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</genome_strand>
        <mrna_strand>CTAAACTCCATACCCTTTTGCTCTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACACCAGGGTTCTTATTGTCAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCGGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAACACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAAGCATATTCGGGACAGATTTACCACCAATGCCAGCTCCAGCTCCAGCACCAGTAACAGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309332" ref_strand="+" ref_description="SGN-E309332 [cLEY-22-P4]">
      <seq>tcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26979" stop="24987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26679" g_stop="26641" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25287" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="717" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E309332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26679" e_stop="26641"/>
          <exon e_start="25964" e_stop="25287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</genome_strand>
        <mrna_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483200" ref_strand="+" ref_description="SGN-E483200 [cSTE-8-I14]">
      <seq>cctcgtgccgaattcggcacgagggtcagtgagtgtatatcaggattaagtgaaaatgggctactccagggttcttattgttagtagtctacttctagtctttcaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggcctttccatacattccttaactaccttgtatcaacaaaagtcatcgagactttccaagcccaagctaacaacacagaagaagggatcacactttttgttcctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgcttcttcctgaagccatattcgggacggatttaccaccaatgccagctncagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26252" stop="24987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25953" g_stop="25287" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="715" r_length="667" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E483200" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25953" e_stop="25287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</genome_strand>
        <mrna_strand>AGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTTCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTCCATACATTCCTTAACTACCTTGTATCAACAAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTNCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459924" ref_strand="+" ref_description="SGN-E459924 [cPRO-29-K16]">
      <seq>ctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggattaagtgaaaatgggctactccagggttcttattgttagtagtctacttctagtctttcaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggcctttccatacattccttaactaccttgtatcaacaaaagtcatcgagactttccaagcccaagctaacaacacagaagaagggatcacactttttgttcctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgcttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="24988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="26641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="55" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25288" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="728" r_length="673" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E459924" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGA</genome_strand>
        <mrna_strand>CTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--A-TTAA-GTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTTCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTCCATACATTCCTTAACTACCTTGTATCAACAAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484602" ref_strand="+" ref_description="SGN-E484602 [cSTE-14-A15]">
      <seq>agggttcttcttgttagtagtccacttcttagtctttcaattgtcaactgtagtcgcgaaaaggcaaagcgattggatcctccaatcatggctccagcaccagcaccaggtcctgaatacaccaacctaacggacttactctccgttgcagggcctttccattacattccttaactaccttgtatcaacaaaagtcatcgagactttccaagcccaagctaacaacacagaagaagggatcacactttttgttcctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcangatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgcttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26234" stop="25008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25934" g_stop="25308" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E484602" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25934" e_stop="25308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTCTTATTGTTAGTAGTCTACTTC-TAGTGTTTCAATTATCAACTGTAGTGGCGA-AAGGCAAAGCGATTGGAT-CTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCA-TACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACT</genome_strand>
        <mrna_strand>AGGGTTCTTCTTGTTAGTAGTCCACTTCTTAGTCTTTCAATTGTCAACTGTAGTCGCGAAAAGGCAAAGCGATTGGATCCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACCAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTCCATTACATTCCTTAACTACCTTGTATCAACAAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCANGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576663" ref_strand="+" ref_description="SGN-E576663 [59916]">
      <seq>cttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctactccagggttcttattgttagtagtctacttctagtctttcaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggcctttccatacattccttaactaccttgtatcaacaaaagtcatcgagactttccaagcccaagctaacaacacagaagaagggatcacactttttgttcctaaagactcatcctttacctcactcaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtgctttctttcctgaagccatattcggggacggattaccaccaatgcccagctccaagcaccagcaccagtaacggatatcggcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="25011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26669" g_stop="26641" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="48" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25311" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="703" r_length="655" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E576663" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26669" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTAC-TTCT-TCCTGAAGCCATATTC-GGGACGGATTTACCACCAATG-CCAGCTCC-AGCACCAGCACCAGTAACGGATATC-GCCCCT</genome_strand>
        <mrna_strand>CTTTTCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTTCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTCCATACATTCCTTAACTACCTTGTATCAACAAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCATCCTTTACCTCACTCAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTGCTTTCTTTCCTGAAGCCATATTCGGGGACGGA-TTACCACCAATGCCCAGCTCCAAGCACCAGCACCAGTAACGGATATCGGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573996" ref_strand="+" ref_description="SGN-E573996 [33395]">
      <seq>ggtcagtgagtttatatcagactaagtgaaaatgggctacaccagggttcttattgttagtagtctacttctagttcttccaattgtcaactgtagtcgcaaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaatacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcaggcgctgttcgcaccacttatccagttgctgtttatcacggtggacaagggtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26252" stop="25089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25964" g_stop="25389" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="593" r_length="580" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E573996" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25964" e_stop="25389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAG-TGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCA-GCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCA-GGTGGACAA-GGTACTT</genome_strand>
        <mrna_strand>ATATCAGACTAAGTGAAAATGGGCTACACCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTTCTTCCAATTGTCAACTGTAGTCGCAAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCACGGTGGACAAGGGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297233" ref_strand="+" ref_description="SGN-E297233 [cLET-29-A19]">
      <seq>tgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26251" stop="25106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25951" g_stop="25406" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E297233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25951" e_stop="25406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATC</genome_strand>
        <mrna_strand>TGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310540" ref_strand="+" ref_description="SGN-E310540 [cLEZ-19-A20]">
      <seq>ctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26271" stop="25107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25964" g_stop="25407" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="568" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E310540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25964" e_stop="25407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTAT</genome_strand>
        <mrna_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465936" ref_strand="+" ref_description="SGN-E465936 [cPRO-22-P5]">
      <seq>cttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctacaccagggttcttattgtcagtagtctacttctagtcttccaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcggcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaactcaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaacacctttgctggaggaaacttatactccttgaacttcaccgatgactctgggaccgttcaccttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="25113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26669" g_stop="26641" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="48" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25413" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="596" r_length="548" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E465936" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26669" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCT</genome_strand>
        <mrna_strand>CTTTTCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACACCAGGGTTCTTATTGTCAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCGGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTCAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAACACCTTTGCTGGAGGAAACTTATACTCCTTGAACTTCACCGATGACTCTGGGACCGTTCACCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311672" ref_strand="+" ref_description="SGN-E311672 [cLEZ-9-L19]">
      <seq>tcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26979" stop="25123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26679" g_stop="26641" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25423" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="581" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E311672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26679" e_stop="26641"/>
          <exon e_start="25964" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTA</genome_strand>
        <mrna_strand>TCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698135" ref_strand="+" ref_description="SGN-E698135 [FA05BE02]">
      <seq>ccctttcctttcctctctctctcagcttctctgtttcaaggggtcagagaatgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcaacctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctacctgatttcacgaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttccccgatgactctgggaccgttcatcttaactcaggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26974" stop="25161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="26641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25461" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="544" r_length="504" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E698135" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="26641"/>
          <exon e_start="25964" e_stop="25461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGG</genome_strand>
        <mrna_strand>CCCTTTCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGAGAATGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAACCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTACCTGATTTCACGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCCCCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265131" ref_strand="+" ref_description="SGN-E265131 [cLEI-2-K13]">
      <seq>gaaaatgggctactccagggttcttattgttagtagtctacttctagtgttgcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggttctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagacttttcaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctatgaacttcaccgatgactctgggaccgttcatcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26250" stop="25170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25950" g_stop="25470" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E265131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25950" e_stop="25470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAAC</genome_strand>
        <mrna_strand>GAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTGCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTTCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTTCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTATGAACTTCACCGATGACTCTGGGACCGTTCATCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366488" ref_strand="+" ref_description="SGN-E366488 [cLPT-13-G12]">
      <seq>acaattggggccatacccacaaaaaaaaaaaaaaaaaactcgagactagttctgtgagtgtgaaaatgggctactccagggttgttattgttagtagtctacttctagtgtttcaattgtcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagacttttcaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccatgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26263" stop="25227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25964" g_stop="25527" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="485" r_length="438" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E366488" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25964" e_stop="25527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCT</genome_strand>
        <mrna_strand>AGTTCTGTGAGTGTGAAAATGGGCTACTCCAGGGTTGTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTGTCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTTCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCATGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463917" ref_strand="+" ref_description="SGN-E463917 [cPRO-16-I22]">
      <seq>ctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtttatatcaggactaagtgaaaatgggctacaccagggttcttattgttagtagtctacttctagtcttccaattgtcaactgtagtcgcaaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgttcccaaagactcagcctttacctcactgaaaaaaccctcactttccaatcttacctcagaacaactccagtccctttgcctttttcatgcattgccacattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="25281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="26641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="55" r_length="19" r_score="0.611"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25581" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="435" r_length="380" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E463917" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTAT</genome_strand>
        <mrna_strand>CTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTTTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACACCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCAAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGTTCCCAAAGACTCAGCCTTTACCTCACTGAAAAAACCCTCACTTTCCAATCTTACCTCAGAACAACTCCAGTCCCTTTGCCTTTTTCATGCATTGCCACATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458402" ref_strand="+" ref_description="SGN-E458402 [cPRO-5-J9]">
      <seq>ctaaactccatacccttttgctctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctacaccagggttcttattgtcagtagtctacttctagtcttccaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcatcgagactttccaggcccaagctaacaacacagaagaagggatcacactttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="27002" stop="25387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26702" g_stop="26641" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="77" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25687" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="351" r_length="274" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E458402" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26702" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGT</genome_strand>
        <mrna_strand>CTAAACTCCATACCCTTTTGCTCTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-A-AGTGAAAATGGGCTACACCAGGGTTCTTATTGTCAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCATCGAGACTTTCCAGGCCCAAGCTAACAACACAGAAGAAGGGATCACACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466550" ref_strand="+" ref_description="SGN-E466550 [cPRO-24-H8]">
      <seq>ctcaagccttttctctctcagcttctctgtttcaaggggtcagtgagtgtatatcaggactaagtgaaaatgggctacaccagggttcttattgtcagtagtctacttctagtcttccaattgtcaactgtagtcgcgaaaggcaaagcgattggatctccaatcatggctccagcaccagcaccaggtcctgaatacacgaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgacaaaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="26969" stop="25441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26680" g_stop="26641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26564" g_stop="26547" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="55" r_length="19" r_score="0.556"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25964" g_stop="25741" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="275" r_length="220" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E466550" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26680" e_stop="26641"/>
          <exon e_start="26564" e_stop="26547"/>
          <exon e_start="25964" e_stop="25741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGT-AGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCAT</genome_strand>
        <mrna_strand>CTCAAGCC-TT--T-TCTCTCTCAGCTTCTCTGTTTCAAG............................................................................GGGTCAGTGAGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG--ACT-AA-GTGAAAATGGGCTACACCAGGGTTCTTATTGTCAGTAGTCTACTTCTAGTCTTCCAATTGTCAACTGTAGTCGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCTCCAGCACCAGCACCAGGTCCTGAATACACGAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACAAAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348586" ref_strand="+" ref_description="SGN-E348586 [cTOF-30-I19]">
      <seq>agagtttcagatatatatatatatatatatatatatatacatgtataatccaaccttggacagatcattcgttcaatatatctgaaatacgtaatccatcgcattgcaatagaagaggagaaaagagaatttgtttggaagttttgtagagcgagaagaatggattttgaactgagaagagcgagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagcaaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgtgctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcaaattgaagaagaactgctagctggacgaggagttgcattctctcgtgttttggaagctgtaccctatgagggtgctggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcaggttgtctgtcgttcaccaatcctctctttcggacttgaaggatgcagagcagaataagcggacaacgcatgcntggagtcctggagttcactgcagatgaatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagtctcgncaatggttcccatggttgangggtgtgttatgtctggctccaaaaaggaacttatgcaaaacttcagccagttgaaagatgtgggctagcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62051" stop="69255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62351" g_stop="62692" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="68141" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="745" r_length="403" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68142" i_stop="68935" i_length="794">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68936" g_stop="68955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="764" r_length="19" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E348586" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62351" e_stop="62692"/>
          <exon e_start="67743" e_stop="68141"/>
          <exon e_start="68936" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTCAGATATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGC-TGGAGTCCTGGAGTTCACTGCAGATG-ATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGA--GGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTC</genome_strand>
        <mrna_strand>AGAGTTTCAGATATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCNTGGAGTCCTGGAGTTCACTGCAGATGAATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGNCAATGGTTCCCATGGTTGANGGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-ATGTGGGCTAGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487205" ref_strand="+" ref_description="SGN-E487205 [cSTE-24-F24]">
      <seq>cacatatatatatcttaccttggaccgatcattcgttcaatatatctgaaatgcataatctatcgcattgcaatagaagagaagagaatttgttttgaagttttgtagagagagaagaatggattttgagcttagaagagcaagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagccaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgagctcgccgacttgatgctgctgaagcccaagctaaggcaacccaacaaattgaagaagaactgctagctggacgaggagttgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcagggtgtctgtcattcaccaatcttctctttcgaacttgaaggatgcagagcagaataagcggacaacacatgctggagtcctggaattcactgcagatgatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagagtcgccaatggttcccatggttgaggtgtgttatgtctggctcttannagggacttatgcaaaacttcagccagttgaagcaggattttctgatatcccctatcacaaggcagttcttngaacaagtcttcgtcagcatgcgacgctttcagaaggcgatgtacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62089" stop="68530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62388" g_stop="62692" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="68230" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="789" r_length="488" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E487205" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62388" e_stop="62692"/>
          <exon e_start="67743" e_stop="68230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGTATA-ATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTAC</genome_strand>
        <mrna_strand>CACATATATATATCTTACCTTGGACCGATCATTCGTTCAATATATCTGAAATGCATAATCTATCGCATTGCAATAG-A-A-GAG--AAGAGAATTTGTTTTGAAGTTTTGTAGAGAGAGAAGAATGGATTTTGAGCTTAGAAGAGCAAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCCAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGAGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAACAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGGTGTCTGTCATTCACCAATCTTCTCTTTCGAACTTGAAGGATGCAGAGCAGAATAAGCGGACAACACATGCTGGAGTCCTGGAATTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGAGTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCTTANNAGGGACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCCTATCACAAGGCAGTTCTTNGAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487046" ref_strand="+" ref_description="SGN-E487046 [cSTE-24-E23]">
      <seq>cacatatatatatcttaccttggaccgatcattcgttcaatatatctgaaatgcataatctatcgcattgcaatagaagagaagagaatttgttttgaagttttgtagagagagaagaatggattttgagcttagaagagcaagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagccaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgagctcgccgacttgatgctgctgaagcccaagctaaggcaacccaacaaattgaagaagaactgctagctggacgaggagttgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62089" stop="68179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62388" g_stop="62692" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="67879" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="438" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E487046" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62388" e_stop="62692"/>
          <exon e_start="67743" e_stop="67879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGTATA-ATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCA</genome_strand>
        <mrna_strand>CACATATATATATCTTACCTTGGACCGATCATTCGTTCAATATATCTGAAATGCATAATCTATCGCATTGCAATAG-A-A-GAG--AAGAGAATTTGTTTTGAAGTTTTGTAGAGAGAGAAGAATGGATTTTGAGCTTAGAAGAGCAAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCCAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGAGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAACAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745269" ref_strand="+" ref_description="SGN-E745269 [GI|47105809]">
      <seq>gggacagatcattcgttcaatatatctgaaatacgtaatccatcgcattgcaatagaagaggagaaaagagaatttgtttggaagttttgtagagcgagaagaatggattttgaactgagaagagcgagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagcaaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgtgctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcaaattgaagaagaactgctagctggacgaggagttgcattctctcgtgttttggaagctgtaccctatgagggtgctggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcaggttgtctgtcgttcaccaatcctctctttcggacttgaaggatgcagagcagaataagcggacaacgcatgctggagtcctggagttcactgcagatgatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagtctcgccaatggttcccatggttgaggtgtgttatgtctggctccaaaaaggaacttatgcaaaacttcagccagttgaagcaggattttctgatatccctaatcacaaggcagttcttgaaacaagtcttcgtcagcatgcgacgctttcagaaggcgatgtacttactgttaatcatggtgttctgacatatcatttacgtgttcttgaactaaaaccttcttcgagtgtgtctgttctagaaacagatatagaggttgatgtaatcggtgctgatccaactgctgagagcacaagtcagcctgtattgcaacctctcgaattgggcaagttagattctggggtggttgcagaaggaagctatgtatattacaagttccaaataggcgatgatgtctggggaaaaatatcttcaggagatgcagaagttgaggtaaaaatagaatcagagaaccaagatggggatactgacctctatgtttcccgacacccattactatttcctacacagcaccagcatggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcggccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtatcttccacattgtctgctgatggagatacagtagaatgccaaaactgtaaacattacataccttccaggagtatagcactacatgaagcttactgcaggaggcacaatatcatctgtcagcataccggttgtggggttgttctaaggagggatgaggtcgagaaccatgtccattgtgaagaatgtgggctagcatttcagaaagaggaaattgagaagcacaagaaagtatttcacgtcccactgaattgcccttgtggaatagtccttgaaaaagaaaagatggttcaacatcaatctgtggagtgtcccttgagacttgtaacatgccggttttgtggagacatggtccaagcagggacttcagcagcagatgtgagggatcgcttaagaggacttacacagcacgagagtgtttgtggatcaagaaccgccccttgtgattcatgtgggcgttcagttatgttgaaggatatggacatacaccaagttgcagtccaccagaaaaattgatcatgagtaaatcttttatttcttctctggtgactttggatataaaatgctggttgaactgtaaaaaccgactgttggttcatgtattcatgcagttgtatagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62108" stop="69748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62407" g_stop="62692" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="69041" g_length="1299"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="1585" r_length="1299" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69119" g_stop="69447" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1586" r_stop="1914" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1915" polyA_stop="1931"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E745269" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1914</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62407" e_stop="62692"/>
          <exon e_start="67743" e_stop="69041"/>
          <exon e_start="69119" e_stop="69447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTAT</genome_strand>
        <mrna_strand>GGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG.............................................................................GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGGTTCATGTATTCATGCAGTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409164" ref_strand="+" ref_description="SGN-E409164 [PPI-13-E12]">
      <seq>atcgaaagagtttcacatatatatatcttaccttggaccgatcattcgttcaatatatctgaaatgcataatctatcgcattgcaatagaagagaagagaatttgttttgaagttttgtagagagagaagaatggattttgagcttagaagagcaagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagccaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgagctcgccgacttgatgctgctgaagcccaagctaaggcaacccaacaaattgaagaagaactgctagctggacgaggagttgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcagggtgtctgtcattcaccaatcttctctttcgaacttgaaggatgcagagcagaataagcggacaacacatgctggagtcctggattcactgcagatgatggtgttgtagggcttcccttccatatatggagtaacttatatcctgcagagtcgcaatggttcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62077" stop="68380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62414" g_stop="62692" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="314" r_length="274" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="68080" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="650" r_length="336" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E409164" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62414" e_stop="62692"/>
          <exon e_start="67743" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCAT</genome_strand>
        <mrna_strand>ATCATTCGTTCAATATATCTGAAATGCATAATCTATCGCATTGCAATAG-A-A-GAG--AAGAGAATTTGTTTTGAAGTTTTGTAGAGAGAGAAGAATGGATTTTGAGCTTAGAAGAGCAAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCCAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGAGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAACAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGGTGTCTGTCATTCACCAATCTTCTCTTTCGAACTTGAAGGATGCAGAGCAGAATAAGCGGACAACACATGCTGGAGTCCTGGA-TTCACTGCAGATGATGGTGTTGTAGGGCTTCCCTTCCATATATGGAGTAACTTATATCCTGCAGAGTCG-CAATGGTTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444003" ref_strand="+" ref_description="SGN-E444003 [cSTA-41-C23]">
      <seq>atcaatcgaaagagtttcacatatatatcttaccttgaaccgatcattcgttcaatatatctgaaatacataatccatcgcattctgcaatagaagagaagagaagatagtttgtttggaagttttgtagagcgagaagaatggattttgagctgagaagagcgagagagaagctagagcaagagcagagggagaggaaactaaaggctaaattgaaattggatagagagaagaaagccaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgagctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcaaattgaagaagaactgctagctggacgaggagttgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcagggtgtctgtcattcaccaatcttctctttcggacttgaaggatgcagagcagaataagcggacaacacatgctggagtcctggagttcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62073" stop="68305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62414" g_stop="62692" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="323" r_length="281" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="68005" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="586" r_length="263" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E444003" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62414" e_stop="62692"/>
          <exon e_start="67743" e_stop="68005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCA-T-TGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGC</genome_strand>
        <mrna_strand>ATCATTCGTTCAATATATCTGAAATACATAATCCATCGCATTCTGCAATAGAAGAGAAGAGAAGATAGTTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAGCTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTAAAGGCTAAATTGAAATTGGATAGAGAGAAGAAAGCCAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGAGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGGTGTCTGTCATTCACCAATCTTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACACATGCTGGAGTCCTGGAGTTCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280083" ref_strand="-" ref_description="SGN-E280083 [cLEL-7-H2](-)">
      <seq>tcggcacgagaatccatcgcattgctatagaagaggagaaaagagaatggggtgtgtaagttttgtagagcgacacgaatggattttgaactgagaagagcgagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagcaaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgtgctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcatattgaagaagaactgctagctggacgaggagttgcattctctcgtgttttggaagctgtaccctatgagggtgctggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62131" stop="68189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62431" g_stop="62692" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="67889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="408" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E280083" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280083" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62431" e_stop="62692"/>
          <exon e_start="67743" e_stop="67889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAAT-TTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTT</genome_strand>
        <mrna_strand>TCGGCACGA-G-AATCCATCGCATTGCTATAGAAGAGGAGAAAAGAGAATGGGGTGTGTAAGTTTTGTAGAGCGACACGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCATATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437373" ref_strand="+" ref_description="SGN-E437373 [cSTA-3-F17]">
      <seq>cgcattctgcaatagaagagaagagaagatagtttgtttggaagttttgtagagcgagaagaatggattttgagctgagaagagcgagagagaagctagagcaagagcagagggagaggaaactaaaggctaaattgaaattggatagagagaagaaagccaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgagctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcaaattgaagaagaactgctagctggacgaggagttgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcagggtgtctgtcattcaccaatcttctctttcggacttgaaggatgcagagcagaataagcggacaacacatgctggagtcctggagttcactgcagatgatggtgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62150" stop="68321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62450" g_stop="62692" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="68021" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="524" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E437373" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62450" e_stop="62692"/>
          <exon e_start="67743" e_stop="68021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCA-T-TGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTA</genome_strand>
        <mrna_strand>CGCATTCTGCAATAGAAGAGAAGAGAAGATAGTTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAGCTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTAAAGGCTAAATTGAAATTGGATAGAGAGAAGAAAGCCAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGAGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGGTGTCTGTCATTCACCAATCTTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACACATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338485" ref_strand="+" ref_description="SGN-E338485 [cTOE-15-B4]">
      <seq>acgaggagttgcattctctcgtgttttggaagctgtaccctatgagggtgctggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcaggttgtctgtcgttcaccaatcctctctttcggacttgaaggatgcagagcagaataagcggacaacgcatgctggagtcctggagttcactgcagatgatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagtctcgccaatggttcccatggttgaggtgtgttatgtctggctccaaaaaggaacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="67478" stop="68421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67778" g_stop="68121" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E338485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67778" e_stop="68121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATG</genome_strand>
        <mrna_strand>ACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469808" ref_strand="+" ref_description="SGN-E469808 [cSTB-14-G14]">
      <seq>tgcattttctcgtgttttggaagctgtaccttatgagggtgccggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcagggtgtctgtcattcaccaatcttctctttgaacttgaaggatgcagagcagaataagcggacaacacatgctggagtcctggaattcactgcagatgatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagagtcgccaatggttcccatggttgaggtgtgttatgtctggctcttaaaaggaacttatgcaaaacttcagccagttgaagcaggattttctgatatccctaatcacaaggcagttcttgaaacaagtcttcgtcagcatgcgacgctttcagaaggcgatgtacttactgttaatcatggtgttctgacatatcatttacgtgttcttgaactaaaaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="67487" stop="68584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67787" g_stop="68284" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E469808" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67787" e_stop="68284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTC</genome_strand>
        <mrna_strand>TGCATTTTCTCGTGTTTTGGAAGCTGTACCTTATGAGGGTGCCGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGGTGTCTGTCATTCACCAATCTTCTCTTT-GAACTTGAAGGATGCAGAGCAGAATAAGCGGACAACACATGCTGGAGTCCTGGAATTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGAGTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCTTAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608542" ref_strand="+" ref_description="SGN-E608542 [24531]">
      <seq>acagatatagaggttgatgtaattggtgctgatccaactgctgagagcacaagtcagcctgtattgcaacctctcgaattgggcaagttagattctggggtggttgcagaaggaagctatgtatattacaagttccaaataggcgatgatatttggggaaaaatatcttcaggagatgctgaatttgaggtaaaaatagaatcagagaaccatgatggggatactgacctctatgtttccagacacccattgctattccctacacagcaccagcacggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcggccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaggccgtctcttccacattgtctgctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68007" stop="69078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68307" g_stop="68779" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E608542" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68307" e_stop="68779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGG</genome_strand>
        <mrna_strand>ACAGATATAGAGGTTGATGTAATTGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATATTTGGGGAAAAATATCTTCAGGAGATGCTGAATTTGAGGTAAAAATAGAATCAGAGAACCATGATGGGGATACTGACCTCTATGTTTCCAGACACCCATTGCTATTCCCTACACAGCACCAGCACGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAGGCCGTCTCTTCCACATTGTCTGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341172" ref_strand="+" ref_description="SGN-E341172 [cTOE-22-J22]">
      <seq>tgagagcacaagtcagcctgtattgcaacctctcgaattgggcaagttagattctggggtggttgcagaaggaagctatgtatattacaagttccaaataggcgatgatgtctggggaaaaatatcttcaggagatgcagaagttgaggtaaaaatagaatcagagaaccaagatggggatactgacctctatgtttcccgacacccattactatttcctacacagcaccagcatggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcggccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtatcttccacattgtctgctgatggagatacagtagaatgccaaaactgtaaacattacataccttccaggagtatagcactacatgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68048" stop="69145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68348" g_stop="68845" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E341172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68348" e_stop="68845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGC</genome_strand>
        <mrna_strand>TGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481123" ref_strand="+" ref_description="SGN-E481123 [cSTD-16-J21]">
      <seq>gggatactgacctctatgtttcccgacacccattgctattccctacacagcaccagcacggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcgaccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtctcttccacattgtctgctgatgcagatacagtagaatgccaaaactgtaagcattacataccttccaggagtatagcacttcatgaagcttactgcaggaggcacaatatcatctgtcagcataccagttgtggggttgttctaaggagggatgaggtcaagaaccatgtccattgtgaagaatgtgggctagcatttcagaaagaggaaattgagaagcacaagaaagtatttcatgtcccgctgaattgcccttgtggaatagtccttgaaaaagaaaagatggttcaacatcaatctgtggagtgtcccttgcgacttgtaacatgccggttttgtggagacatggtccaagcagggacttcagcagcagatgtgagggatcgcttaagaggactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68224" stop="69533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68524" g_stop="69041" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69119" g_stop="69233" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="633" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E481123" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68524" e_stop="69041"/>
          <exon e_start="69119" e_stop="69233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTA</genome_strand>
        <mrna_strand>GGGATACTGACCTCTATGTTTCCCGACACCCATTGCTATTCCCTACACAGCACCAGCACGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGACCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTCTCTTCCACATTGTCTGCTGATGCAGATACAGTAGAATGCCAAAACTGTAAGCATTACATACCTTCCAGGAGTATAGCACTTCATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCAGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCAAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCATGTCCCGCTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG.............................................................................GTTCAACATCAATCTGTGGAGTGTCCCTTGCGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428809" ref_strand="+" ref_description="SGN-E428809 [STM-50-P20]">
      <seq>gggatactgacctctatgtttcccgacacccattgctattccctacacagcaccagcacggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcgaccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtctcttccacattgtctgctgatgcagatacagtagaatgccaaaactgtaagcattacataccttccaggagtatagcacttcatgaagcttactgcaggaggcacaatatcatctgtcagcataccagttgtggggttgttctaaggagggatgaggtcaagaaccatgtccattgtgaagaatgtgggctagcatttcagaaagaggaaattgagaagcacaagaaagtatttcatgtcccgctgaattgccccttgtgaatagtccttgaaaaagaaagatgggttcacatcaatctgtggagtgtcccttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68224" stop="69450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68524" g_stop="69041" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69119" g_stop="69150" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="549" r_length="32" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E428809" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68524" e_stop="69041"/>
          <exon e_start="69119" e_stop="69150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAG</genome_strand>
        <mrna_strand>GGGATACTGACCTCTATGTTTCCCGACACCCATTGCTATTCCCTACACAGCACCAGCACGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGACCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTCTCTTCCACATTGTCTGCTGATGCAGATACAGTAGAATGCCAAAACTGTAAGCATTACATACCTTCCAGGAGTATAGCACTTCATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCAGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCAAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCATGTCCCGCTGAATTGCCCCTTGTGAATAGTCCTTGAAAAAG-AAAGATG.............................................................................GGTTCACATCAATCTGTGGAGTGTCCCTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734518" ref_strand="+" ref_description="SGN-E734518 [LB12DE07]">
      <seq>agctttggtccttaactccagggatctcggccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtatcttccacattgtctgctgatggagatacagtagaatgccaaaactgtaaacattacataccttccaggagtatagcactacatgaagcttactgcaggaggcacaatatcatctgtcagcataccggttgtggggttgttctaaggagggatgaggtcgagaaccatgtccattgtgaagaatgtgggctagcatttcagaaagaggaaattgagaagcacaagaaagtatttcacgtcccactgaattgcccttgtggaatagtccttgaaaaagaaaagatggttcaacatcaatctgtggagtgtcccttgagacttgtaacatgccggttttgtggagacatggtccaagcagggacttcagcagcagatgtgagggatcgcttaagaggacttacacagcacgagagtgtttgtggatcaagaaccgccccttgtgattcatgtgggcgttcagttatgttgaaggatatggacatacaccaagttgcagtccaccagaaaaattgatcatgagtaaatcttttatttcttctctggtgactttggatataaaatgctggttgaactgtaaaaaccgactgttgattcatgtattcatgcagttgtatattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68312" stop="69752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68612" g_stop="69041" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69119" g_stop="69453" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="765" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="775"/>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E734518" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68612" e_stop="69041"/>
          <exon e_start="69119" e_stop="69453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTC</genome_strand>
        <mrna_strand>AGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG.............................................................................GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428810" ref_strand="-" ref_description="SGN-E428810 [STM-50-P20]">
      <seq>cagaaagaggaaattgagaagcacaagaaagtatttcatgtcccgctgaattgcccttgtggaatagtccttgaaaaagaaaagatggttcaacatcaatctgtggagtgtcccttgcgacttgtaacatgccggttttgtggagacatggtccaagcagggacttcagcagcagatgtgagggatcgcttaagaggacttacacagcacgagagtgtttgtggatcaagaactgccccttgtgattcatgtgggcgttcagttatgttgaaagatatggacatacaccaagttgcagtccaccagaaaaattgatcatcagtaaatcttctatttcttctctggtgtctttggatataaaatgctggctgaactgttaagctctggctgttgattcatgtattcaggcagttgtatattttagtttttatttgtcattctcaaccacggggttgcaaggcaaagggaggggtggattgatgatttgtagctccctttgctgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68655" stop="69835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68955" g_stop="69041" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69119" g_stop="69535" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="506" r_length="419" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E428810" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428810" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68955" e_stop="69041"/>
          <exon e_start="69119" e_stop="69535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTG-TAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTCGTCTTTATTTTTCATTCTCAACCAC-TTTAAGGGTTGCAAGGGGAGGGGTGGATTGATGATTTCTAGCTCCCTTTGCTGTGAC</genome_strand>
        <mrna_strand>CAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCATGTCCCGCTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG.............................................................................GTTCAACATCAATCTGTGGAGTGTCCCTTGCGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACTGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAAGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATCAGTAAATCTTCTATTTCTTCTCTGGTGTCTTTGGATATAAAATGCTGGCTGAACTGTTAAGCTCTGGCTGTTGATTCATGTATTCAGGCAGTTGTATATTTTAGTTTTTATTTGTCATTCTCAACCACGGGGTTGCAAGGCAAAGGGAGGGGTGGATTGATGATTTGTAGCTCCCTTTGCTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210366" ref_strand="+" ref_description="SGN-E210366 [cLEC-35-B2]">
      <seq>ttttaaagacaaaaatatacaactgcatgaatacatgaatcaacagtcggtttgtacagttcaaccagcattttatatccaaagttattttagaagaaataaaagatttactcatgatcaatttttctggtggactgcaacttggtgtatgtccatatccttcaacataactgaacgcccacatgaatcacaaggggcggttcttgatccacaaacactctcgtgctgtgtcagtcctcttaagcgatccctcacatctgctgctgaagtccctgcttggaccatgtctccacaaaaccggcatgttacaagtctcaagggacactccacagattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="69760" stop="68826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69463" g_stop="69126" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E210366" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69463" e_stop="69126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAGACGAAAATATACAACTGCATGAATACATGAATCAACAGTCGGTTTTTACAGTTCAACCAGCATTTTATATCCAAAGTCACCAGAGAAGAAATAAAAGATTTACTCATGATCAATTTTTCTGGTGGACTGCAACTTGGTGTATGTCCATATCCTTCAACATAACTGAACGCCCACATGAATCACAAGGGGCGGTTCTTGATCCACAAACACTCTCGTGCTGTGTAAGTCCTCTTAAGCGATCCCTCACATCTGCTGCTGAAGTCCCTGCTTGGACCATGTCTCCACAAAACCGGCATGTTACAAGTCTCAAGGGACACTCCACAGATTGAT</genome_strand>
        <mrna_strand>TTTTAAAGACAAAAATATACAACTGCATGAATACATGAATCAACAGTCGGTTTGTACAGTTCAACCAGCATTTTATATCCAAAGTTATTTTAGAAGAAATAAAAGATTTACTCATGATCAATTTTTCTGGTGGACTGCAACTTGGTGTATGTCCATATCCTTCAACATAACTGAACGCCCACATGAATCACAAGGGGCGGTTCTTGATCCACAAACACTCTCGTGCTGTGTCAGTCCTCTTAAGCGATCCCTCACATCTGCTGCTGAAGTCCCTGCTTGGACCATGTCTCCACAAAACCGGCATGTTACAAGTCTCAAGGGACACTCCACAGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="75483" stop="74152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75188" g_stop="74452" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75188" e_stop="74452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCCAGTGTATAGACCAAGAATGACTCGCGCCTTTCACAAAAGAGTAAGAACCAGAAAATTTGAAAGTTGGTCAGTTGGTTCTTAACCGTATTTTTCCTCATCAAGACGAGTACCAAGGAAAGTTCCCAACAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTG-AAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="75483" stop="74192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75188" g_stop="74492" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75188" e_stop="74492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCCAGTGTATAGACCAAGAATGACTCGCGCCTTTCACAAAAGAGTAAGAACCAGAAAATTTGAAAGTTGGTCAGTTGGTTCTTAACCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAG-TGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="75483" stop="74193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75188" g_stop="74493" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75188" e_stop="74493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCCAGTGTATAGACCAAGAATGACTCGCGCCTTTCACAAAAGAGTAAGAACCAGAAAATTTGAAAGTTGGTCAGTTGGTTCTTAACCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTG-AAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243204" ref_strand="+" ref_description="SGN-E243204 [cLEE-2-O19]">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="100979" stop="102113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101279" g_stop="101813" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E243204" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101279" e_stop="101813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="305" stop="102802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102117" g_stop="102502" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102117" e_stop="102502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="124302" stop="123317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124002" g_stop="123617" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124002" e_stop="123617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGCTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243204" ref_strand="+" ref_description="SGN-E243204 [cLEE-2-O19]">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="125140" stop="124006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124840" g_stop="124306" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-E243204" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124840" e_stop="124306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130625" stop="131965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130925" g_stop="131665" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130925" e_stop="131665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130689" stop="132019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130984" g_stop="131719" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130984" e_stop="131719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130689" stop="131979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130984" g_stop="131679" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130984" e_stop="131679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130689" stop="131978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130984" g_stop="131678" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130984" e_stop="131678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>104</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="605" PGL_stop="990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="605" e_stop="990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="605" e_stop="990" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="605" stop="990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="607" stop="924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRGIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="605" stop="853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGEVFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="690" stop="938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRARYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1600" PGL_stop="4113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1600" e_stop="1834"/>
            <exon e_start="2239" e_stop="2493"/>
            <exon e_start="2865" e_stop="3363"/>
            <exon e_start="4086" e_stop="4113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1600" e_stop="1834" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="1835" i_stop="2238" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2239" e_stop="2493" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2494" i_stop="2864" i_length="371"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2865" e_stop="3363" e_length="499"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3364" i_stop="4085" i_length="722"/>
          </intron>
          <exon e_serial="4" e_score="0.643">
            <gDNA_exon_boundary e_start="4086" e_stop="4113" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1600" stop="1834"/>
              <exon start="2239" stop="2493"/>
              <exon start="2865" stop="2922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2372" stop="2493"/>
              <exon start="2865" stop="3350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2416" stop="2493"/>
              <exon start="2865" stop="3350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="2493"/>
              <exon start="2865" stop="3363"/>
              <exon start="4086" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308047" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2893" stop="3350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2949" stop="3350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAATGGTGCTGTTTCTGGTCAGGCTTTGACTGCTCATACTCAATCTGGTGATAACATGAGATCTTTTGGTAGTGTTGATTTTGCTAATGGAGAGTTAGGTGGTGGTGGTAGTTCAGTTACTTCTAGACAACGTAGAAGAAAT : GTTCATGGAGTATTGAATGCAGTGAGTTGGGGAGTGTTAATGCCAATGGGTGCAGTATTTGCAAGGTACTTGAAGGTTTTCAAAGCAGCAAATCCAGCTTGGTTTTATATACATGTTGCTTGTCAAACTTCTGCATATATTGTTGGTGTTGCTGGATGGGGAACTGGTCTCAAACTTGGCAGTGATTCTACCGGTATCGAATTCACTACTCACAGGAACATTGGCATCACTCTCTTTTGCCTCGGAACACTTCAG : GTATTTGCTTTGCTTCTGAGGCCAAAGCCAGACCACAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCGAATGTTTACAAAGGATTTGATGCATTGAATGGACAGAAGAATTGGAAGAGGGCTTACACTGGTGTGATCATAGCCATAGGTGCCATTGCTGTTTTATTAGAAGCTTTTACTTGGTTCATTGTCATTAAAAGGAAAAAAACAGACTCTAACAAGCACACACAAAATGGAACAAATGGTACTGTTAATCCTTATGGAAATGGGACTCATCAACAGGCATAACTTAAAAATATCACTTTGAACATTTTTGTATGTTTATATGTTTTTTGTTGTTTGGTCAGATTTTGTCTTTTTTTTTTTTAATTTTTGCAGATTGATATATATTCTTGTATACATCATATATGTTGAAAGACCACCTATTTGTGGTTTTATTTATTATTACTAGTTTTTTTTTTCA : AATTAAACAAGAAGAAAACATAAAAGTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  A  K  W  C  C  F  W  S  G  F  D  C  S  Y  S  I  W  *  *  H  E  I  F  W  *  C  *  F  C  *  W  R  V  R  W  W  W  *  F  S  Y  F  *  T  T  *  K  K   : C  S  W  S  I  E  C  S  E  L  G  S  V  N  A  N  G  C  S  I  C  K  V  L  E  G  F  Q  S  S  K  S  S  L  V  L  Y  T  C  C  L  S  N  F  C  I  Y  C  W  C  C  W  M  G  N  W  S  Q  T  W  Q  *  F  Y  R  Y  R  I  H  Y  S  Q  E  H  W  H  H  S  L  L  P  R  N  T  S   : G  I  C  F  A  S  E  A  K  A  R  P  Q  V  Q  I  I  L  E  H  L  P  P  C  C  W  I  R  G  N  K  S  E  H  R  E  C  L  Q  R  I  *  C  I  E  W  T  E  E  L  E  E  G  L  H  W  C  D  H  S  H  R  C  H  C  C  F  I  R  S  F  Y  L  V  H  C  H  *  K  E  K  N  R  L  *  Q  A  H  T  K  W  N  K  W  Y  C  *  S  L  W  K  W  D  S  S  T  G  I  T  *  K  Y  H  F  E  H  F  C  M  F  I  C  F  L  L  F  G  Q  I  L  S  F  F  F  L  I  F  A  D  *  Y  I  F  L  Y  T  S  Y  M  L  K  D  H  L  F  V  V  L  F  I  I  T  S  F  F  F  Q :   I  K  Q  E  E  N  I  K  V </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  Q  N  G  A  V  S  G  Q  A  L  T  A  H  T  Q  S  G  D  N  M  R  S  F  G  S  V  D  F  A  N  G  E  L  G  G  G  G  S  S  V  T  S  R  Q  R  R  R  N  :  V  H  G  V  L  N  A  V  S  W  G  V  L  M  P  M  G  A  V  F  A  R  Y  L  K  V  F  K  A  A  N  P  A  W  F  Y  I  H  V  A  C  Q  T  S  A  Y  I  V  G  V  A  G  W  G  T  G  L  K  L  G  S  D  S  T  G  I  E  F  T  T  H  R  N  I  G  I  T  L  F  C  L  G  T  L  Q  :  V  F  A  L  L  L  R  P  K  P  D  H  K  Y  R  L  Y  W  N  I  Y  H  H  A  V  G  Y  A  V  I  S  L  S  I  A  N  V  Y  K  G  F  D  A  L  N  G  Q  K  N  W  K  R  A  Y  T  G  V  I  I  A  I  G  A  I  A  V  L  L  E  A  F  T  W  F  I  V  I  K  R  K  K  T  D  S  N  K  H  T  Q  N  G  T  N  G  T  V  N  P  Y  G  N  G  T  H  Q  Q  A  *  L  K  N  I  T  L  N  I  F  V  C  L  Y  V  F  C  C  L  V  R  F  C  L  F  F  F  *  F  L  Q  I  D  I  Y  S  C  I  H  H  I  C  *  K  T  T  Y  L  W  F  Y  L  L  L  L  V  F  F  F   : K  L  N  K  K  K  T  *  K   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  M  V  L  F  L  V  R  L  *  L  L  I  L  N  L  V  I  T  *  D  L  L  V  V  L  I  L  L  M  E  S  *  V  V  V  V  V  Q  L  L  L  D  N  V  E  E  M :   F  M  E  Y  *  M  Q  *  V  G  E  C  *  C  Q  W  V  Q  Y  L  Q  G  T  *  R  F  S  K  Q  Q  I  Q  L  G  F  I  Y  M  L  L  V  K  L  L  H  I  L  L  V  L  L  D  G  E  L  V  S  N  L  A  V  I  L  P  V  S  N  S  L  L  T  G  T  L  A  S  L  S  F  A  S  E  H  F  R :   Y  L  L  C  F  *  G  Q  S  Q  T  T  S  T  D  Y  T  G  T  S  T  T  M  L  L  D  T  R  *  *  V  *  A  S  R  M  F  T  K  D  L  M  H  *  M  D  R  R  I  G  R  G  L  T  L  V  *  S  *  P  *  V  P  L  L  F  Y  *  K  L  L  L  G  S  L  S  L  K  G  K  K  Q  T  L  T  S  T  H  K  M  E  Q  M  V  L  L  I  L  M  E  M  G  L  I  N  R  H  N  L  K  I  S  L  *  T  F  L  Y  V  Y  M  F  F  V  V  W  S  D  F  V  F  F  F  F  N  F  C  R  L  I  Y  I  L  V  Y  I  I  Y  V  E  R  P  P  I  C  G  F  I  Y  Y  Y  *  F  F  F  S  :  N  *  T  R  R  K  H  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1601" stop="1834"/>
                    <exon start="2239" stop="2493"/>
                    <exon start="2865" stop="3188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFWQNGAVSGQALTAHTQSGDNMRSFGSVDFANGELGGGGSSVTSRQRRRNVHGVLNAVSWGVLMPMGAVFARYLKVFKAANPAWFYIHVACQTSAYIVGVAGWGTGLKLGSDSTGIEFTTHRNIGITLFCLGTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLSIANVYKGFDALNGQKNWKRAYTGVIIAIGAIAVLLEAFTWFIVIKRKKTDSNKHTQNGTNGTVNPYGNGTHQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="3622" PGL_stop="2858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3622" e_stop="3599"/>
            <exon e_start="3368" e_stop="2858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.818" acc_prob="0.000" e_score="0.583"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.583">
            <gDNA_exon_boundary e_start="3622" e_stop="3599" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.818" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3598" i_stop="3369" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="3368" e_stop="2858" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3622" stop="3599"/>
              <exon start="3368" stop="2945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3355" stop="2858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCGCAGATTATATTTCAAA : TAGAATGAAAAAAAAAACTAGTAATAATAAATAAAACCACAAATAGGTGGTCTTTCAACATATATGATGTATACAAGAATATATATCAATCTGCAAAAATTAAAAAAAAAAAAGACAAAATCTGACCAAACAACAAAAAACATATAAACATACAAAAATGTTCAAAGTGATATTTTTAAGTTATGCCTGTTGATGAGTCCCATTTCCATAAGGATTAACAGTACCATTTGTTCCATTTTGTGTGTGCTTGTTAGAGTCTGTTTTTTTCCTTTTAATGACAATGAACCAAGTAAAAGCTTCTAATAAAACAGCAATGGCACCTATGGCTATGATCACACCAGTGTAAGCCCTCTTCCAATTCTTCTGTCCATTCAATGCATCAAATCCTTTGTAAACATTCGCGATGCTCAGACTTATTACCGCGTATCCAACAGCATGGTGGTAGATGTTCCAGTATAATCTGTACTTGTGGTCTGGCTTTGGCCTCAGAAGCAAAGCAAATACCTACAAT</gDNA_template>
            <first_frame> S  S  R  R  L  Y  F  K  :  *  N  E  K  K  N  *  *  *  *  I  K  P  Q  I  G  G  L  S  T  Y  M  M  Y  T  R  I  Y  I  N  L  Q  K  L  K  K  K  K  T  K  S  D  Q  T  T  K  N  I  *  T  Y  K  N  V  Q  S  D  I  F  K  L  C  L  L  M  S  P  I  S  I  R  I  N  S  T  I  C  S  I  L  C  V  L  V  R  V  C  F  F  P  F  N  D  N  E  P  S  K  S  F  *  *  N  S  N  G  T  Y  G  Y  D  H  T  S  V  S  P  L  P  I  L  L  S  I  Q  C  I  K  S  F  V  N  I  R  D  A  Q  T  Y  Y  R  V  S  N  S  M  V  V  D  V  P  V  *  S  V  L  V  V  W  L  W  P  Q  K  Q  S  K  Y  L  Q  </first_frame>
            <second_frame>  L  L  A  D  Y  I  S  N :   R  M  K  K  K  T  S  N  N  K  *  N  H  K  *  V  V  F  Q  H  I  *  C  I  Q  E  Y  I  S  I  C  K  N  *  K  K  K  R  Q  N  L  T  K  Q  Q  K  T  Y  K  H  T  K  M  F  K  V  I  F  L  S  Y  A  C  *  *  V  P  F  P  *  G  L  T  V  P  F  V  P  F  C  V  C  L  L  E  S  V  F  F  L  L  M  T  M  N  Q  V  K  A  S  N  K  T  A  M  A  P  M  A  M  I  T  P  V  *  A  L  F  Q  F  F  C  P  F  N  A  S  N  P  L  *  T  F  A  M  L  R  L  I  T  A  Y  P  T  A  W  W  *  M  F  Q  Y  N  L  Y  L  W  S  G  F  G  L  R  S  K  A  N  T  Y  N </second_frame>
            <third_frame>   F  S  Q  I  I  F  Q   : I  E  *  K  K  K  L  V  I  I  N  K  T  T  N  R  W  S  F  N  I  Y  D  V  Y  K  N  I  Y  Q  S  A  K  I  K  K  K  K  D  K  I  *  P  N  N  K  K  H  I  N  I  Q  K  C  S  K  *  Y  F  *  V  M  P  V  D  E  S  H  F  H  K  D  *  Q  Y  H  L  F  H  F  V  C  A  C  *  S  L  F  F  S  F  *  *  Q  *  T  K  *  K  L  L  I  K  Q  Q  W  H  L  W  L  *  S  H  Q  C  K  P  S  S  N  S  S  V  H  S  M  H  Q  I  L  C  K  H  S  R  C  S  D  L  L  P  R  I  Q  Q  H  G  G  R  C  S  S  I  I  C  T  C  G  L  A  L  A  S  E  A  K  Q  I  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="4463" PGL_stop="3984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4463" e_stop="3984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="4463" e_stop="3984" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4463" stop="4225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4462" stop="3984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGATTAATATACTCAATCTAATGAACATAATTCTCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTTATTATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAGCGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTTCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  M  I  N  I  L  N  L  M  N  I  I  L  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  F  I  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  F  G  Y  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  *  L  I  Y  S  I  *  *  T  *  F  S  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  L  L  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  S  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  S  D  I  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  D  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  Y  Y  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  A  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4199" stop="3984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLHYFGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="5182" PGL_stop="14180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5182" e_stop="5542"/>
            <exon e_start="11938" e_stop="12149"/>
            <exon e_start="13750" e_stop="13784"/>
            <exon e_start="14002" e_stop="14047"/>
            <exon e_start="14108" e_stop="14180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.958" acc_prob="0.000" e_score="0.927"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.686"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.674"/>
          <exon-only e_score="0.616"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="5182" e_stop="5542" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5543" i_stop="11937" i_length="6395"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="11938" e_stop="12149" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12150" i_stop="13749" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="0.686">
            <gDNA_exon_boundary e_start="13750" e_stop="13784" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13785" i_stop="14001" i_length="217"/>
          </intron>
          <exon e_serial="4" e_score="0.674">
            <gDNA_exon_boundary e_start="14002" e_stop="14047" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14048" i_stop="14107" i_length="60"/>
          </intron>
          <exon e_serial="5" e_score="0.616">
            <gDNA_exon_boundary e_start="14108" e_stop="14180" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5182" stop="5542"/>
              <exon start="11938" stop="12149"/>
              <exon start="13750" stop="13784"/>
              <exon start="14002" stop="14047"/>
              <exon start="14108" stop="14180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5182" stop="5542"/>
              <exon start="11938" stop="12129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5182" stop="5542"/>
              <exon start="11938" stop="12036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5183" stop="5542"/>
              <exon start="11938" stop="12141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5183" stop="5542"/>
              <exon start="11938" stop="12128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5183" stop="5542"/>
              <exon start="11938" stop="12055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTCTTTTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGTCCGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCCTGCC : AGTGACGGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCAATTTTCAGTATCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACAGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCCCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACAGGTCGTTACACAATATAGCCT : TTATTTGTTATTATTATTTTTGCTTTAAGATTTAT : AATACTATTATTAATGCAAAGATTTTCTAATGCACGCATACCTATA : TTAATAATTGAATGAAAATATTAAAAATTATGTAATACATATTATTTTTAATTAATATAACAAAACAAATAAT</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  S  V  V  P  A  M  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  C   : Q  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  N  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  T  I  *  P  :  L  F  V  I  I  I  F  A  L  R  F  I :   I  L  L  L  M  Q  R  F  S  N  A  R  I  P  I  :  L  I  I  E  *  K  Y  *  K  L  C  N  T  Y  Y  F  *  L  I  *  Q  N  K  *  </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  S  F  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  W  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  P  A  :  S  D  G  P  S  C  H  F  V  T  K  F  R  E  S  I  F  S  I  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  Q  S  V  V  L  M  T  V  R  R  G  F  R  R  P  S  L  F  F  Q  K  *  N  L  L  L  K  M  T  K  Q  V  V  T  Q  Y  S  L :   Y  L  L  L  L  F  L  L  *  D  L   : *  Y  Y  Y  *  C  K  D  F  L  M  H  A  Y  L  Y :   *  *  L  N  E  N  I  K  N  Y  V  I  H  I  I  F  N  *  Y  N  K  T  N  N </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  S  L  F  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  V  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  L  P :   V  T  V  R  P  A  I  S  L  R  S  S  E  S  Q  F  S  V  S  N  F  R  I  S  K  C  F  E  T  R  P  L  D  S  P  S  C  S  *  R  S  V  V  G  S  V  V  P  A  C  F  S  R  N  K  I  C  C  S  K  *  L  N  R  S  L  H  N  I  A   : F  I  C  Y  Y  Y  F  C  F  K  I  Y  :  N  T  I  I  N  A  K  I  F  *  C  T  H  T  Y   : I  N  N  *  M  K  I  L  K  I  M  *  Y  I  L  F  L  I  N  I  T  K  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5375" stop="5542"/>
                    <exon start="11938" stop="12012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPSCLRWSVLQVVARFRDSISTKESVTVRPASDGPSCHFVTKFRESIFSIQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7883" e_stop="8633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="7883" e_stop="8633" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7883" stop="8595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7883" stop="8478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7883" stop="8408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7954" stop="8633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7954" stop="8312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  P  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  V  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  L  V  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  L  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  P  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  S  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  H  P  C  S  S  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  P  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8048" stop="8386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHYYKFVMPIPGSKSSLWHIPCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9038" e_stop="9830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="9038" e_stop="9830" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9038" stop="9759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9041" stop="9706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9398" stop="9830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACTGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACAGACATCCTACCTTGCTCTAAGCTCAAAAATTCATCTCTTTTCCTATCCCTCAAAAAGTCCGGGGGATATACTTCTCCATAAACAGGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTTGAGGTTTCAATTTCAAGAACTTATTGAAAAGTTCATGCTGGTCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTATTGGTGCAGAAAACACTGGAGGTGTTTGACCTTGATCAGATAACCCACTGAGATAAGCAAGCACCTGATTTATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  L  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  K  F  I  S  F  P  I  P  Q  K  V  R  G  I  Y  F  S  I  N  R  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  *  G  F  N  F  K  N  L  L  K  S  S  C  W  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  I  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  W  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  K  L  K  N  S  S  L  F  L  S  L  K  K  S  G  G  Y  T  S  P  *  T  G  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  G  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  F  D  L  D  Q  I  T  H  *  D  K  Q  A  P  D  L  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  Q  T  S  Y  L  A  L  S  S  K  I  H  L  F  S  Y  P  S  K  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  L  R  F  Q  F  Q  E  L  I  E  K  F  M  L  V  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  Y  W  C  R  K  H  W  R  C  L  T  L  I  R  *  P  T  E  I  S  K  H  L  I  Y  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  L  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9607" stop="9828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTEISKHLIYHLWGRLGWQFLILHLLSFPFLTLSYYFFSRWRSHRPSIRWARCSSSSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9632" stop="9829"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNSSFCTCSVSPSSPSLTTSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="10585" e_stop="10922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="10585" e_stop="10922" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10585" stop="10922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  K  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  S  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  V  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  I  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  F  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  D  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  I  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  I  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="6402" e_stop="6578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="6402" e_stop="6578" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6402" stop="6578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  H  S  D  *  P  L </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  I  L  E  S  F  T  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="9763" PGL_stop="9210"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9763" e_stop="9210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="9763" e_stop="9210" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9763" stop="9210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  Q  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  P  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  I  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  N  K  F  L  K  L  K  P  Q  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  *  I  R  C  L  L  I  S  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  Y  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  T  S  M  N  F  S  I  S  S  *  N  *  N  L  K  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9762" stop="9211"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPIPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFNKFLKLKPQVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="10121" PGL_stop="9837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10121" e_stop="9837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="10121" e_stop="9837" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10121" stop="9837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGATATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAACAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  *  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  D  I  *  P  S  S  L  S  F  A  D  G  *  N  *  N  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  I  S  D  H  L  H  S  L  S  R  M  V  R  T  R  T  T  T  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="10912" PGL_stop="10674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10912" e_stop="10674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="10912" e_stop="10674" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="10674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAATCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAACGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGATTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTTATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGTTGTT</gDNA_template>
            <first_frame> S  R  I  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  I  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  Y  V  *  T  *  R  *  L  I  M  T  *  Y  L  L   </first_frame>
            <second_frame>  H  E  S  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  N  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  *  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  H  S  T  C  C  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  T  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  D  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  L  C  V  N  L  T  V  I  D  Y  D  I  V  L  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="15906" PGL_stop="19143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15906" e_stop="16250"/>
            <exon e_start="16834" e_stop="16980"/>
            <exon e_start="17136" e_stop="17283"/>
            <exon e_start="18960" e_stop="19143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15906" e_stop="16250" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.977">
            <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16834" e_stop="16980" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.883">
            <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17136" e_stop="17283" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17284" i_stop="18959" i_length="1676"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="18960" e_stop="19143" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15906" stop="16250"/>
              <exon start="16834" stop="16956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15915" stop="16250"/>
              <exon start="16834" stop="16980"/>
              <exon start="17136" stop="17283"/>
              <exon start="18960" stop="19057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15973" stop="16250"/>
              <exon start="16834" stop="16980"/>
              <exon start="17136" stop="17283"/>
              <exon start="18960" stop="19143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15985" stop="16250"/>
              <exon start="16834" stop="16980"/>
              <exon start="17136" stop="17283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTACCCAAAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG : TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG : GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG : GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAGAGGAGATGTAAAGAAACCAATGCTCCAAAGGATTTATGGCACTGCATGGGAGAATGAGGACCAATTAAAAGCATACCTTCA</gDNA_template>
            <first_frame> H  Y  P  K  A  A  Q  M  K  Y  V  G  A  L  G  K  T  M  A  L  S  L  S  S  R  S  L  F  T  S  S  Y  K  S  I  S  P  L  S  R  N  P  F  S  S  F  P  I  R  Q  Y  R  I  L  F  V  L  D  P  S  N  N  N  N  N  N  K  T  N  R  N  K  L  L  R  R  R  T  S  F  S  T  H  A  S  T  A  L  Q  E  A  P  A  P  N  E  K  M  V  L  P  T  N  E  S  S  D  G  L  L  R  I  R  H  T  :  C  A  H  V  M  A  M  A  V  Q  K  L  Y  P  N  A  K  V  T  I  G  P  W  I  D  N  G  F  Y  Y  D  F  D  M  E  P  L  T  D  S  D  L  K  R  I  K  K  E  M  :  D  R  I  I  S  R  N  L  P  L  V  R  E  E  V  S  R  D  E  A  Q  R  R  I  M  S  I  N  E  P  Y  K  I  E  I  L  E  S  I  K  E  E  P  I  T  I  Y  H  I   : G  D  E  W  W  D  L  C  A  G  P  H  V  E  T  T  G  K  I  N  R  K  A  I  E  L  E  S  V  A  G  A  Y  W  R  G  D  V  K  K  P  M  L  Q  R  I  Y  G  T  A  W  E  N  E  D  Q  L  K  A  Y  L   </first_frame>
            <second_frame>  I  T  Q  K  Q  L  K  *  S  T  L  A  L  W  G  K  Q  W  R  Y  H  Y  L  H  A  L  S  S  L  P  L  I  N  P  F  L  L  S  V  E  T  P  F  L  P  S  Q  F  V  S  I  V  F  F  L  F  L  I  P  L  T  T  T  T  T  T  K  L  T  G  T  S  C  *  D  V  A  L  L  S  L  P  M  L  P  P  P  Y  K  K  L  L  P  Q  M  R  K  W  F  S  Q  L  T  S  H  Q  M  G  Y  F  E  F  A  I  R :   V  L  M  L  W  P  W  Q  S  K  N  S  T  R  M  Q  K  *  Q  L  G  P  G  S  I  M  V  F  I  M  I  L  I  W  S  L  *  L  T  V  T  *  R  G  L  R  R  K  W :   I  E  L  S  A  E  T  C  L  L  L  E  K  K  L  A  G  M  K  L  K  E  E  *  C  L  S  T  N  L  T  R  S  K  F  *  R  A  *  R  R  N  Q  L  P  F  I  I  L  :  V  M  N  G  G  I  F  V  R  D  L  M  L  K  L  Q  E  R  L  T  E  K  L  L  S  L  N  L  L  L  V  L  T  G  E  E  M  *  R  N  Q  C  S  K  G  F  M  A  L  H  G  R  M  R  T  N  *  K  H  T  F  </second_frame>
            <third_frame>   L  P  K  S  S  S  N  E  V  R  W  R  S  G  E  N  N  G  V  I  T  I  F  T  L  S  L  H  F  L  L  *  I  H  F  S  S  Q  *  K  P  L  F  F  L  P  N  S  S  V  S  Y  S  F  C  S  *  S  L  *  Q  Q  Q  Q  Q  Q  N  *  P  E  Q  V  A  E  T  S  H  F  F  L  Y  P  C  F  H  R  P  T  R  S  S  C  P  K  *  E  N  G  S  P  N  *  R  V  I  R  W  A  T  S  N  S  P  Y   : V  C  S  C  Y  G  H  G  S  P  K  T  L  P  E  C  K  S  D  N  W  A  L  D  R  *  W  F  L  L  *  F  *  Y  G  A  F  D  *  Q  *  P  E  E  D  *  E  G  N   : G  S  N  Y  Q  P  K  L  A  S  C  *  R  R  S  *  P  G  *  S  S  K  K  N  N  V  Y  Q  R  T  L  Q  D  R  N  F  R  E  H  K  G  G  T  N  Y  H  L  S  Y  W :   *  *  M  V  G  S  L  C  G  T  S  C  *  N  Y  R  K  D  *  Q  K  S  Y  *  A  *  I  C  C  W  C  L  L  E  R  R  C  K  E  T  N  A  P  K  D  L  W  H  C  M  G  E  *  G  P  I  K  S  I  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15906" stop="16250"/>
                    <exon start="16834" stop="16980"/>
                    <exon start="17136" stop="17283"/>
                    <exon start="18960" stop="19141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYPKAAQMKYVGALGKTMALSLSSRSLFTSSYKSISPLSRNPFSSFPIRQYRILFVLDPSNNNNNNKTNRNKLLRRRTSFSTHASTALQEAPAPNEKMVLPTNESSDGLLRIRHTCAHVMAMAVQKLYPNAKVTIGPWIDNGFYYDFDMEPLTDSDLKRIKKEMDRIISRNLPLVREEVSRDEAQRRIMSINEPYKIEILESIKEEPITIYHIGDEWWDLCAGPHVETTGKINRKAIELESVAGAYWRGDVKKPMLQRIYGTAWENEDQLKAYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="19524" PGL_stop="22715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19524" e_stop="19725"/>
            <exon e_start="21647" e_stop="21955"/>
            <exon e_start="22184" e_stop="22384"/>
            <exon e_start="22675" e_stop="22715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.997" e_score="0.985"/>
          <exon-intron don_prob="0.774" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.865" e_score="0.985"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19524" e_stop="19725" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19726" i_stop="21646" i_length="1921"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="21647" e_stop="21955" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.774" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21956" i_stop="22183" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="22184" e_stop="22384" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.865">
            <gDNA_intron_boundary i_start="22385" i_stop="22674" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="22675" e_stop="22715" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19524" stop="19725"/>
              <exon start="21647" stop="21955"/>
              <exon start="22184" stop="22296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21755" stop="21955"/>
              <exon start="22184" stop="22384"/>
              <exon start="22675" stop="22715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATATGTTTGATCAGATGGAGATTGAGGAAGAGCTTTTTCAGCTTCGGCCAATGAACTGCCCTTATCATGTATTGATCTATAAGAGGCAGTTACACTCTTATCGGGATTTTCCAATCAGAGTTGCAGAGTTGGGAACAGTGTATAGGTATGAGTTATCCGGAAGCTTACATGGGCTTTTCCGTGTAAGAGGTTTTACTCAG : GATGATGCACACATCTTCTGTTTAGAAGATCAAATTAAAGATGAAATCAGGGGTGTTTTAGATCTGACAGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAAGTGAACCTCTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATCTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAG : GTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTCGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCTCAG : CTCCAGTACTGCAATGAAGTAGTCAAGAAACTAAAAGCTAG</gDNA_template>
            <first_frame> E  Y  V  *  S  D  G  D  *  G  R  A  F  S  A  S  A  N  E  L  P  L  S  C  I  D  L  *  E  A  V  T  L  L  S  G  F  S  N  Q  S  C  R  V  G  N  S  V  *  V  *  V  I  R  K  L  T  W  A  F  P  C  K  R  F  Y  S   : G  *  C  T  H  L  L  F  R  R  S  N  *  R  *  N  Q  G  C  F  R  S  D  R  G  N  I  T  A  I  W  F  *  Q  V  *  S  E  P  L  N  K  A  R  K  S  C  W  R  *  *  D  L  G  K  S  N  I  C  T  *  G  C  F  R  R  *  R  L  E  L  S  N  R  *  W  W  W  G  L  L  W  S  K  D  *  S  E  N  *  G  C  S  W  K  E  V  A  M  L  N  Y  T   : G  *  F  Q  F  T  P  A  L  *  H  Y  I  C  R  F  K  S  R  E  E  A  T  Y  H  D  P  *  S  S  S  W  I  F  G  A  L  F  W  C  S  H  R  E  L  C  W  *  F  S  T  L  A  F  S  H  P  S  S  S  F  T  S  Y  *  C  S   : A  P  V  L  Q  *  S  S  Q  E  T  K  S  * </first_frame>
            <second_frame>  N  M  F  D  Q  M  E  I  E  E  E  L  F  Q  L  R  P  M  N  C  P  Y  H  V  L  I  Y  K  R  Q  L  H  S  Y  R  D  F  P  I  R  V  A  E  L  G  T  V  Y  R  Y  E  L  S  G  S  L  H  G  L  F  R  V  R  G  F  T  Q  :  D  D  A  H  I  F  C  L  E  D  Q  I  K  D  E  I  R  G  V  L  D  L  T  E  E  I  L  Q  Q  F  G  F  D  K  Y  E  V  N  L  S  T  R  P  E  K  A  V  G  D  D  E  I  W  E  K  A  T  F  A  L  K  D  A  L  E  D  K  G  W  S  Y  Q  I  D  D  G  G  G  A  F  Y  G  P  K  I  D  L  K  I  E  D  A  L  G  R  K  W  Q  C  S  T  I  Q  :  V  D  F  N  L  P  Q  R  F  D  I  T  Y  V  D  S  N  Q  E  R  K  R  P  I  M  I  H  R  A  V  L  G  S  L  E  R  F  F  G  V  L  I  E  N  Y  A  G  D  F  P  L  W  L  S  P  I  Q  A  R  V  L  P  V  T  D  A  Q  :  L  Q  Y  C  N  E  V  V  K  K  L  K  A   </second_frame>
            <third_frame>   I  C  L  I  R  W  R  L  R  K  S  F  F  S  F  G  Q  *  T  A  L  I  M  Y  *  S  I  R  G  S  Y  T  L  I  G  I  F  Q  S  E  L  Q  S  W  E  Q  C  I  G  M  S  Y  P  E  A  Y  M  G  F  S  V  *  E  V  L  L  R :   M  M  H  T  S  S  V  *  K  I  K  L  K  M  K  S  G  V  F  *  I  *  Q  R  K  Y  Y  S  N  L  V  L  T  S  M  K  *  T  S  Q  Q  G  Q  K  K  L  L  E  M  M  R  S  G  K  K  Q  H  L  H  L  R  M  L  *  K  I  K  V  G  A  I  K  *  M  M  V  V  G  P  S  M  V  Q  R  L  I  *  K  L  R  M  L  L  E  G  S  G  N  A  Q  L  Y  R :   L  I  S  I  Y  P  S  A  L  T  L  H  M  S  I  Q  I  K  R  G  S  D  L  S  *  S  I  E  Q  F  L  D  L  W  S  A  F  L  V  F  S  *  R  I  M  L  V  I  F  H  F  G  F  L  P  S  K  L  E  F  Y  Q  L  L  M  L  S :   S  S  T  A  M  K  *  S  R  N  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19525" stop="19725"/>
                    <exon start="21647" stop="21955"/>
                    <exon start="22184" stop="22384"/>
                    <exon start="22675" stop="22713"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMFDQMEIEEELFQLRPMNCPYHVLIYKRQLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILQQFGFDKYEVNLSTRPEKAVGDDEIWEKATFALKDALEDKGWSYQIDDGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDITYVDSNQERKRPIMIHRAVLGSLERFFGVLIENYAGDFPLWLSPIQARVLPVTDAQLQYCNEVVKKLKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21552" e_stop="21955"/>
            <exon e_start="22184" e_stop="22503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="21552" e_stop="21955" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21956" i_stop="22183" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="22184" e_stop="22503" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21552" stop="21955"/>
              <exon start="22184" stop="22503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTGCTTTCAAGTGTTGATTCTTTCATCCAGAAACTCTAAAGTAGTAGCAGCTTGCATTACTGTTATCTGATACCCCCTATATTGATTTTGCAGGATGATGCACACATCTTCTGTTTAGAAGATCAAATTAAAGATGAAATCAGGGGTGTTTTAGATCTGACAGAGGAAATATTACAGCAATTTGGTTTTGACAAGTATGAAGTGAACCTCTCAACAAGGCCAGAAAAAGCTGTTGGAGATGATGAGATCTGGGAAAAAGCAACATTTGCACTTAAGGATGCTTTAGAAGATAAAGGTTGGAGCTATCAAATAGATGATGGTGGTGGGGCCTTCTATGGTCCAAAGATTGATCTGAAAATTGAGGATGCTCTTGGAAGGAAGTGGCAATGCTCAACTATACAG : GTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTCGATTCAAATCAAGAGAGGAAGCGACCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGCTTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCACTTTGGCTTTCTCCCATCCAAGCTCGAGTTTTACCAGTTACTGATGCTCAGGTAATCAATACTCTTTTGACTAATTCTCGTCTCCATTTGCATAAATACATGTTTAGTATTTTACCCTGACGAGAGATGCTTACACTACACTAACTCCTGGAAGTCGCCCTTTAACATAA</gDNA_template>
            <first_frame> V  C  F  Q  V  L  I  L  S  S  R  N  S  K  V  V  A  A  C  I  T  V  I  *  Y  P  L  Y  *  F  C  R  M  M  H  T  S  S  V  *  K  I  K  L  K  M  K  S  G  V  F  *  I  *  Q  R  K  Y  Y  S  N  L  V  L  T  S  M  K  *  T  S  Q  Q  G  Q  K  K  L  L  E  M  M  R  S  G  K  K  Q  H  L  H  L  R  M  L  *  K  I  K  V  G  A  I  K  *  M  M  V  V  G  P  S  M  V  Q  R  L  I  *  K  L  R  M  L  L  E  G  S  G  N  A  Q  L  Y  R :   L  I  S  I  Y  P  S  A  L  T  L  H  M  S  I  Q  I  K  R  G  S  D  L  S  *  S  I  E  Q  F  L  D  L  W  S  A  F  L  V  F  S  *  R  I  M  L  V  I  F  H  F  G  F  L  P  S  K  L  E  F  Y  Q  L  L  M  L  R  *  S  I  L  F  *  L  I  L  V  S  I  C  I  N  T  C  L  V  F  Y  P  D  E  R  C  L  H  Y  T  N  S  W  K  S  P  F  N  I  </first_frame>
            <second_frame>  S  A  F  K  C  *  F  F  H  P  E  T  L  K  *  *  Q  L  A  L  L  L  S  D  T  P  Y  I  D  F  A  G  *  C  T  H  L  L  F  R  R  S  N  *  R  *  N  Q  G  C  F  R  S  D  R  G  N  I  T  A  I  W  F  *  Q  V  *  S  E  P  L  N  K  A  R  K  S  C  W  R  *  *  D  L  G  K  S  N  I  C  T  *  G  C  F  R  R  *  R  L  E  L  S  N  R  *  W  W  W  G  L  L  W  S  K  D  *  S  E  N  *  G  C  S  W  K  E  V  A  M  L  N  Y  T   : G  *  F  Q  F  T  P  A  L  *  H  Y  I  C  R  F  K  S  R  E  E  A  T  Y  H  D  P  *  S  S  S  W  I  F  G  A  L  F  W  C  S  H  R  E  L  C  W  *  F  S  T  L  A  F  S  H  P  S  S  S  F  T  S  Y  *  C  S  G  N  Q  Y  S  F  D  *  F  S  S  P  F  A  *  I  H  V  *  Y  F  T  L  T  R  D  A  Y  T  T  L  T  P  G  S  R  P  L  T  * </second_frame>
            <third_frame>   L  L  S  S  V  D  S  F  I  Q  K  L  *  S  S  S  S  L  H  Y  C  Y  L  I  P  P  I  L  I  L  Q  D  D  A  H  I  F  C  L  E  D  Q  I  K  D  E  I  R  G  V  L  D  L  T  E  E  I  L  Q  Q  F  G  F  D  K  Y  E  V  N  L  S  T  R  P  E  K  A  V  G  D  D  E  I  W  E  K  A  T  F  A  L  K  D  A  L  E  D  K  G  W  S  Y  Q  I  D  D  G  G  G  A  F  Y  G  P  K  I  D  L  K  I  E  D  A  L  G  R  K  W  Q  C  S  T  I  Q  :  V  D  F  N  L  P  Q  R  F  D  I  T  Y  V  D  S  N  Q  E  R  K  R  P  I  M  I  H  R  A  V  L  G  S  L  E  R  F  F  G  V  L  I  E  N  Y  A  G  D  F  P  L  W  L  S  P  I  Q  A  R  V  L  P  V  T  D  A  Q  V  I  N  T  L  L  T  N  S  R  L  H  L  H  K  Y  M  F  S  I  L  P  *  R  E  M  L  T  L  H  *  L  L  E  V  A  L  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21593" stop="21955"/>
                    <exon start="22184" stop="22453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSLHYCYLIPPILILQDDAHIFCLEDQIKDEIRGVLDLTEEILQQFGFDKYEVNLSTRPEKAVGDDEIWEKATFALKDALEDKGWSYQIDDGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDITYVDSNQERKRPIMIHRAVLGSLERFFGVLIENYAGDFPLWLSPIQARVLPVTDAQVINTLLTNSRLHLHKYMFSILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="24980" PGL_stop="25718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24980" e_stop="25718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="24980" e_stop="25718" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24980" stop="25718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25092" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATGGAATATGGAGTATGAGAAAATGAAATGATACATGAATGTATACAAAAATATTGTGAAGTAACCAATACTAAATCCCCAATGTGTGGAGTATATCAAAACCAATAAGAAAAAACAGATGTACCATGATGTTCAACATTAATTTAACAGAATAAGACATCATTTTTCATTACAAGAAAAACATCAAGAATCCACCACCAATTGCCAAAACCAAATGTTTCAAAATGCCCCAGCTCATCATCTTGTGAGAAGCTGATGGTGACGATGAATCAGGCGATGCTGGTGCTCTAGCTTTGCCTGTTTGATCAGCAGCTGGACTATCAGCAGTAGGGGCGATATCCGTTACTGGTGCTGGTGCTGGAGCTGGCATTGGTGGTAAATCCGTCCCGAATATGGCTTCAGGAAGAAGTACCTTGTCCACCTGATAAACAGCAACTGGATAAGTGGTGCGAACAGCGCTGCTAACTTTAGTCCTAGACCATCCTGAGTTAAGATGAACGGTCCCAGAGTCATCGGTGAAGTTCAAAGAGTATAAGTTCCCTCCAGCCAAGGTATTAATAGGGCTAACATCACTAAGGTTCTTGAAATCAGCTAGACTATAGTAATGTGGCAATGCGTGGAAAAGGCAAAGGGACTTAAGTTGTTCTGAGGTAAGATTGGAAAGTGAGGGCTTTTTCAGTGAGGTAAAGGCTGAGTCTTTAGGAACAAAAAGTGTGATCCCTTCTTCTGTATTGTT</gDNA_template>
            <first_frame> N  M  E  Y  G  V  *  E  N  E  M  I  H  E  C  I  Q  K  Y  C  E  V  T  N  T  K  S  P  M  C  G  V  Y  Q  N  Q  *  E  K  T  D  V  P  *  C  S  T  L  I  *  Q  N  K  T  S  F  F  I  T  R  K  T  S  R  I  H  H  Q  L  P  K  P  N  V  S  K  C  P  S  S  S  S  C  E  K  L  M  V  T  M  N  Q  A  M  L  V  L  *  L  C  L  F  D  Q  Q  L  D  Y  Q  Q  *  G  R  Y  P  L  L  V  L  V  L  E  L  A  L  V  V  N  P  S  R  I  W  L  Q  E  E  V  P  C  P  P  D  K  Q  Q  L  D  K  W  C  E  Q  R  C  *  L  *  S  *  T  I  L  S  *  D  E  R  S  Q  S  H  R  *  S  S  K  S  I  S  S  L  Q  P  R  Y  *  *  G  *  H  H  *  G  S  *  N  Q  L  D  Y  S  N  V  A  M  R  G  K  G  K  G  T  *  V  V  L  R  *  D  W  K  V  R  A  F  S  V  R  *  R  L  S  L  *  E  Q  K  V  *  S  L  L  L  Y  C  </first_frame>
            <second_frame>  I  W  N  M  E  Y  E  K  M  K  *  Y  M  N  V  Y  K  N  I  V  K  *  P  I  L  N  P  Q  C  V  E  Y  I  K  T  N  K  K  K  Q  M  Y  H  D  V  Q  H  *  F  N  R  I  R  H  H  F  S  L  Q  E  K  H  Q  E  S  T  T  N  C  Q  N  Q  M  F  Q  N  A  P  A  H  H  L  V  R  S  *  W  *  R  *  I  R  R  C  W  C  S  S  F  A  C  L  I  S  S  W  T  I  S  S  R  G  D  I  R  Y  W  C  W  C  W  S  W  H  W  W  *  I  R  P  E  Y  G  F  R  K  K  Y  L  V  H  L  I  N  S  N  W  I  S  G  A  N  S  A  A  N  F  S  P  R  P  S  *  V  K  M  N  G  P  R  V  I  G  E  V  Q  R  V  *  V  P  S  S  Q  G  I  N  R  A  N  I  T  K  V  L  E  I  S  *  T  I  V  M  W  Q  C  V  E  K  A  K  G  L  K  L  F  *  G  K  I  G  K  *  G  L  F  Q  *  G  K  G  *  V  F  R  N  K  K  C  D  P  F  F  C  I  V </second_frame>
            <third_frame>   Y  G  I  W  S  M  R  K  *  N  D  T  *  M  Y  T  K  I  L  *  S  N  Q  Y  *  I  P  N  V  W  S  I  S  K  P  I  R  K  N  R  C  T  M  M  F  N  I  N  L  T  E  *  D  I  I  F  H  Y  K  K  N  I  K  N  P  P  P  I  A  K  T  K  C  F  K  M  P  Q  L  I  I  L  *  E  A  D  G  D  D  E  S  G  D  A  G  A  L  A  L  P  V  *  S  A  A  G  L  S  A  V  G  A  I  S  V  T  G  A  G  A  G  A  G  I  G  G  K  S  V  P  N  M  A  S  G  R  S  T  L  S  T  *  *  T  A  T  G  *  V  V  R  T  A  L  L  T  L  V  L  D  H  P  E  L  R  *  T  V  P  E  S  S  V  K  F  K  E  Y  K  F  P  P  A  K  V  L  I  G  L  T  S  L  R  F  L  K  S  A  R  L  *  *  C  G  N  A  W  K  R  Q  R  D  L  S  C  S  E  V  R  L  E  S  E  G  F  F  S  E  V  K  A  E  S  L  G  T  K  S  V  I  P  S  S  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="26702" PGL_stop="24987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26689" e_stop="26641"/>
            <exon e_start="25964" e_stop="24987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26689" e_stop="26641" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="25964" e_stop="24987" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26689" stop="26641"/>
              <exon start="25964" stop="25236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26684" stop="26641"/>
              <exon start="25964" stop="25134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="26641"/>
              <exon start="25964" stop="25461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26679" stop="26641"/>
              <exon start="25964" stop="25165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26679" stop="26641"/>
              <exon start="25964" stop="25182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26679" stop="26641"/>
              <exon start="25964" stop="25187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26679" stop="26641"/>
              <exon start="25964" stop="25287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26679" stop="26641"/>
              <exon start="25964" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26678" stop="26641"/>
              <exon start="25964" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26676" stop="26641"/>
              <exon start="25964" stop="25091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26674" stop="26641"/>
              <exon start="25964" stop="25122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26673" stop="26641"/>
              <exon start="25964" stop="25138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26670" stop="26641"/>
              <exon start="25964" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26660" stop="26641"/>
              <exon start="25964" stop="25081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25951" stop="25406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25950" stop="25470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25934" stop="25308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25777" stop="25089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="24987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25477" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25477" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG : GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCATGTATCATTTCATTTTCTCATACTCCATATT</gDNA_template>
            <first_frame> P  F  A  L  K  P  F  L  S  L  S  A  S  L  F  Q   : G  V  S  E  C  E  N  G  L  L  Q  G  S  Y  C  *  *  S  T  S  S  V  S  I  I  N  C  S  G  E  R  Q  S  D  W  I  S  N  H  G  T  S  T  S  T  R  S  *  I  H  K  P  N  G  L  T  L  R  C  R  A  F  S  Y  I  P  *  L  P  C  I  D  *  S  H  R  D  F  P  S  P  S  *  Q  Y  R  R  R  D  H  T  F  C  S  *  R  L  S  L  Y  L  T  E  K  A  L  T  F  Q  S  Y  L  R  T  T  *  V  P  L  P  F  P  R  I  A  T  L  L  *  S  S  *  F  Q  E  P  *  *  C  *  P  Y  *  Y  L  G  W  R  E  L  I  L  F  E  L  H  R  *  L  W  D  R  S  S  *  L  R  M  V  *  D  *  S  *  Q  R  C  S  H  H  L  S  S  C  C  L  S  G  G  Q  G  T  S  S  *  S  H  I  R  D  G  F  T  T  N  A  S  S  S  T  S  T  S  N  G  Y  R  P  Y  C  *  *  S  S  C  *  S  N  R  Q  S  *  S  T  S  I  A  *  F  I  V  T  I  S  F  S  Q  D  D  E  L  G  H  F  E  T  F  G  F  G  N  W  W  W  I  L  D  V  F  L  V  M  K  N  D  V  L  F  C  *  I  N  V  E  H  H  G  T  S  V  F  S  Y  W  F  *  Y  T  P  H  I  G  D  L  V  L  V  T  S  Q  Y  F  C  I  H  S  C  I  I  S  F  S  H  T  P  Y  </first_frame>
            <second_frame>  L  L  L  S  S  L  S  S  L  S  Q  L  L  C  F  K  :  G  S  V  S  V  K  M  G  Y  S  R  V  L  I  V  S  S  L  L  L  V  F  Q  L  S  T  V  V  A  K  G  K  A  I  G  S  P  I  M  A  P  A  P  A  P  G  P  E  Y  T  N  L  T  D  L  L  S  V  A  G  P  F  H  T  F  L  N  Y  L  V  S  T  K  V  I  E  T  F  Q  A  Q  A  N  N  T  E  E  G  I  T  L  F  V  P  K  D  S  A  F  T  S  L  K  K  P  S  L  S  N  L  T  S  E  Q  L  K  S  L  C  L  F  H  A  L  P  H  Y  Y  S  L  A  D  F  K  N  L  S  D  V  S  P  I  N  T  L  A  G  G  N  L  Y  S  L  N  F  T  D  D  S  G  T  V  H  L  N  S  G  W  S  R  T  K  V  S  S  A  V  R  T  T  Y  P  V  A  V  Y  Q  V  D  K  V  L  L  P  E  A  I  F  G  T  D  L  P  P  M  P  A  P  A  P  A  P  V  T  D  I  A  P  T  A  D  S  P  A  A  D  Q  T  G  K  A  R  A  P  A  S  P  D  S  S  S  P  S  A  S  H  K  M  M  S  W  G  I  L  K  H  L  V  L  A  I  G  G  G  F  L  M  F  F  L  *  *  K  M  M  S  Y  S  V  K  L  M  L  N  I  M  V  H  L  F  F  L  I  G  F  D  I  L  H  T  L  G  I  *  Y  W  L  L  H  N  I  F  V  Y  I  H  V  S  F  H  F  L  I  L  H  I </second_frame>
            <third_frame>   F  C  S  Q  A  F  P  L  S  L  S  F  S  V  S  R :   G  Q  *  V  *  K  W  A  T  P  G  F  L  L  L  V  V  Y  F  *  C  F  N  Y  Q  L  *  W  R  K  A  K  R  L  D  L  Q  S  W  H  Q  H  Q  H  Q  V  L  N  T  Q  T  *  R  T  Y  S  P  L  Q  G  L  F  I  H  S  L  T  T  L  Y  R  L  K  S  S  R  L  S  K  P  K  L  T  I  Q  K  K  G  S  H  F  L  F  L  K  T  Q  P  L  P  H  *  K  S  P  H  F  P  I  L  P  Q  N  N  L  S  P  F  A  F  S  T  H  C  H  I  T  I  V  *  L  I  S  R  T  L  V  M  L  A  L  L  I  P  W  L  E  G  T  Y  T  L  *  T  S  P  M  T  L  G  P  F  I  L  T  Q  D  G  L  G  L  K  L  A  A  L  F  A  P  L  I  Q  L  L  F  I  R  W  T  R  Y  F  F  L  K  P  Y  S  G  R  I  Y  H  Q  C  Q  L  Q  H  Q  H  Q  *  R  I  S  P  L  L  L  I  V  Q  L  L  I  K  Q  A  K  L  E  H  Q  H  R  L  I  H  R  H  H  Q  L  L  T  R  *  *  A  G  A  F  *  N  I  W  F  W  Q  L  V  V  D  S  *  C  F  S  C  N  E  K  *  C  L  I  L  L  N  *  C  *  T  S  W  Y  I  C  F  F  L  L  V  L  I  Y  S  T  H  W  G  F  S  I  G  Y  F  T  I  F  L  Y  T  F  M  Y  H  F  I  F  S  Y  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26688" stop="26641"/>
                    <exon start="25964" stop="25152"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLSSLSSLSQLLCFKGSVSVKMGYSRVLIVSSLLLVFQLSTVVAKGKAIGSPIMAPAPAPGPEYTNLTDLLSVAGPFHTFLNYLVSTKVIETFQAQANNTEEGITLFVPKDSAFTSLKKPSLSNLTSEQLKSLCLFHALPHYYSLADFKNLSDVSPINTLAGGNLYSLNFTDDSGTVHLNSGWSRTKVSSAVRTTYPVAVYQVDKVLLPEAIFGTDLPPMPAPAPAPVTDIAPTADSPAADQTGKARAPASPDSSSPSASHKMMSWGILKHLVLAIGGGFLMFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26702" e_stop="26641"/>
            <exon e_start="26564" e_stop="26547"/>
            <exon e_start="25964" e_stop="24987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.805" e_score="0.935"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.611"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="26702" e_stop="26641" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.805">
            <gDNA_intron_boundary i_start="26640" i_stop="26565" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="26564" e_stop="26547" e_length="18"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26546" i_stop="25965" i_length="582"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="25964" e_stop="24987" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26702" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26702" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26680" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26669" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26669" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26669" stop="26641"/>
              <exon start="26564" stop="26547"/>
              <exon start="25964" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25964" stop="25527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25953" stop="25287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25951" stop="25406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25950" stop="25470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25934" stop="25308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25777" stop="25089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="24987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25477" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25477" stop="25017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG : GGGTAGTGGGATTTTTTT : GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACTTCACAATATTTTTGTATACATTCATGTATCATTTCATTTTCTCATACTCCATATT</gDNA_template>
            <first_frame> L  N  S  I  P  F  C  S  Q  A  F  P  L  S  L  S  F  S  V  S  R :   G  S  G  I  F  L :   G  Q  *  V  *  K  W  A  T  P  G  F  L  L  L  V  V  Y  F  *  C  F  N  Y  Q  L  *  W  R  K  A  K  R  L  D  L  Q  S  W  H  Q  H  Q  H  Q  V  L  N  T  Q  T  *  R  T  Y  S  P  L  Q  G  L  F  I  H  S  L  T  T  L  Y  R  L  K  S  S  R  L  S  K  P  K  L  T  I  Q  K  K  G  S  H  F  L  F  L  K  T  Q  P  L  P  H  *  K  S  P  H  F  P  I  L  P  Q  N  N  L  S  P  F  A  F  S  T  H  C  H  I  T  I  V  *  L  I  S  R  T  L  V  M  L  A  L  L  I  P  W  L  E  G  T  Y  T  L  *  T  S  P  M  T  L  G  P  F  I  L  T  Q  D  G  L  G  L  K  L  A  A  L  F  A  P  L  I  Q  L  L  F  I  R  W  T  R  Y  F  F  L  K  P  Y  S  G  R  I  Y  H  Q  C  Q  L  Q  H  Q  H  Q  *  R  I  S  P  L  L  L  I  V  Q  L  L  I  K  Q  A  K  L  E  H  Q  H  R  L  I  H  R  H  H  Q  L  L  T  R  *  *  A  G  A  F  *  N  I  W  F  W  Q  L  V  V  D  S  *  C  F  S  C  N  E  K  *  C  L  I  L  L  N  *  C  *  T  S  W  Y  I  C  F  F  L  L  V  L  I  Y  S  T  H  W  G  F  S  I  G  Y  F  T  I  F  L  Y  T  F  M  Y  H  F  I  F  S  Y  S  I   </first_frame>
            <second_frame>  *  T  P  Y  P  F  A  L  K  P  F  L  S  L  S  A  S  L  F  Q   : G  V  V  G  F  F   : W  V  S  E  C  E  N  G  L  L  Q  G  S  Y  C  *  *  S  T  S  S  V  S  I  I  N  C  S  G  E  R  Q  S  D  W  I  S  N  H  G  T  S  T  S  T  R  S  *  I  H  K  P  N  G  L  T  L  R  C  R  A  F  S  Y  I  P  *  L  P  C  I  D  *  S  H  R  D  F  P  S  P  S  *  Q  Y  R  R  R  D  H  T  F  C  S  *  R  L  S  L  Y  L  T  E  K  A  L  T  F  Q  S  Y  L  R  T  T  *  V  P  L  P  F  P  R  I  A  T  L  L  *  S  S  *  F  Q  E  P  *  *  C  *  P  Y  *  Y  L  G  W  R  E  L  I  L  F  E  L  H  R  *  L  W  D  R  S  S  *  L  R  M  V  *  D  *  S  *  Q  R  C  S  H  H  L  S  S  C  C  L  S  G  G  Q  G  T  S  S  *  S  H  I  R  D  G  F  T  T  N  A  S  S  S  T  S  T  S  N  G  Y  R  P  Y  C  *  *  S  S  C  *  S  N  R  Q  S  *  S  T  S  I  A  *  F  I  V  T  I  S  F  S  Q  D  D  E  L  G  H  F  E  T  F  G  F  G  N  W  W  W  I  L  D  V  F  L  V  M  K  N  D  V  L  F  C  *  I  N  V  E  H  H  G  T  S  V  F  S  Y  W  F  *  Y  T  P  H  I  G  D  L  V  L  V  T  S  Q  Y  F  C  I  H  S  C  I  I  S  F  S  H  T  P  Y  </second_frame>
            <third_frame>   K  L  H  T  L  L  L  S  S  L  S  S  L  S  Q  L  L  C  F  K  :  G  *  W  D  F  F  :  G  S  V  S  V  K  M  G  Y  S  R  V  L  I  V  S  S  L  L  L  V  F  Q  L  S  T  V  V  A  K  G  K  A  I  G  S  P  I  M  A  P  A  P  A  P  G  P  E  Y  T  N  L  T  D  L  L  S  V  A  G  P  F  H  T  F  L  N  Y  L  V  S  T  K  V  I  E  T  F  Q  A  Q  A  N  N  T  E  E  G  I  T  L  F  V  P  K  D  S  A  F  T  S  L  K  K  P  S  L  S  N  L  T  S  E  Q  L  K  S  L  C  L  F  H  A  L  P  H  Y  Y  S  L  A  D  F  K  N  L  S  D  V  S  P  I  N  T  L  A  G  G  N  L  Y  S  L  N  F  T  D  D  S  G  T  V  H  L  N  S  G  W  S  R  T  K  V  S  S  A  V  R  T  T  Y  P  V  A  V  Y  Q  V  D  K  V  L  L  P  E  A  I  F  G  T  D  L  P  P  M  P  A  P  A  P  A  P  V  T  D  I  A  P  T  A  D  S  P  A  A  D  Q  T  G  K  A  R  A  P  A  S  P  D  S  S  S  P  S  A  S  H  K  M  M  S  W  G  I  L  K  H  L  V  L  A  I  G  G  G  F  L  M  F  F  L  *  *  K  M  M  S  Y  S  V  K  L  M  L  N  I  M  V  H  L  F  F  L  I  G  F  D  I  L  H  T  L  G  I  *  Y  W  L  L  H  N  I  F  V  Y  I  H  V  S  F  H  F  L  I  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26558" stop="26547"/>
                    <exon start="25964" stop="25152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDFFGSVSVKMGYSRVLIVSSLLLVFQLSTVVAKGKAIGSPIMAPAPAPGPEYTNLTDLLSVAGPFHTFLNYLVSTKVIETFQAQANNTEEGITLFVPKDSAFTSLKKPSLSNLTSEQLKSLCLFHALPHYYSLADFKNLSDVSPINTLAGGNLYSLNFTDDSGTVHLNSGWSRTKVSSAVRTTYPVAVYQVDKVLLPEAIFGTDLPPMPAPAPAPVTDIAPTADSPAADQTGKARAPASPDSSSPSASHKMMSWGILKHLVLAIGGGFLMFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="62351" PGL_stop="69535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62388" e_stop="62692"/>
            <exon e_start="67743" e_stop="69041"/>
            <exon e_start="69119" e_stop="69535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62388" e_stop="62692" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67743" e_stop="69041" e_length="1299"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="69119" e_stop="69535" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62388" stop="62692"/>
              <exon start="67743" stop="68230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62388" stop="62692"/>
              <exon start="67743" stop="67879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62407" stop="62692"/>
              <exon start="67743" stop="69041"/>
              <exon start="69119" stop="69447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62414" stop="62692"/>
              <exon start="67743" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62414" stop="62692"/>
              <exon start="67743" stop="68005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="62692"/>
              <exon start="67743" stop="67889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62692"/>
              <exon start="67743" stop="68021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67778" stop="68121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67787" stop="68284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68307" stop="68779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68348" stop="68845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68524" stop="69041"/>
              <exon start="69119" stop="69233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68524" stop="69041"/>
              <exon start="69119" stop="69150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68612" stop="69041"/>
              <exon start="69119" stop="69453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68955" stop="69041"/>
              <exon start="69119" stop="69535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428810" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG : GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG : GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTCGTCTTTATTTTTCATTCTCAACCACTTTAAGGGTTGCAAGGGGAGGGGTGGATTGATGATTTCTAGCTCCCTTTGCTGTGAC</gDNA_template>
            <first_frame> Y  M  Y  N  P  T  L  D  R  S  F  V  Q  Y  I  *  N  T  *  S  I  A  L  Q  *  K  R  R  K  E  N  L  F  G  S  F  V  E  R  E  E  W  I  L  N  *  E  E  R  E  R  S  *  S  K  S  R  G  R  G  N  S  R  L  N  *  N  W  T  E  R  R  K  Q  N  K  K  L  F  V  N  V  K  Q  L  K  L  F  S  V  L  A  D  L  M  L  L  K  P  K  L  R :   Q  P  S  K  L  K  K  N  C  *  L  D  E  E  L  H  S  L  V  F  W  K  L  Y  P  M  R  V  L  E  I  K  L  N  C  H  H  L  A  S  L  N  C  L  I  R  V  P  L  T  R  D  L  Y  T  S  G  C  L  S  F  T  N  P  L  F  R  T  *  R  M  Q  S  R  I  S  G  Q  R  M  L  E  S  W  S  S  L  Q  M  M  V  L  *  G  F  L  P  I  Y  G  V  T  Y  I  L  Q  S  R  Q  W  F  P  W  L  R  C  V  M  S  G  S  K  K  E  L  M  Q  N  F  S  Q  L  K  Q  D  F  L  I  S  L  I  T  R  Q  F  L  K  Q  V  F  V  S  M  R  R  F  Q  K  A  M  Y  L  L  L  I  M  V  F  *  H  I  I  Y  V  F  L  N  *  N  L  L  R  V  C  L  F  *  K  Q  I  *  R  L  M  *  S  V  L  I  Q  L  L  R  A  Q  V  S  L  Y  C  N  L  S  N  W  A  S  *  I  L  G  W  L  Q  K  E  A  M  Y  I  T  S  S  K  *  A  M  M  S  G  E  K  Y  L  Q  E  M  Q  K  L  R  *  K  *  N  Q  R  T  K  M  G  I  L  T  S  M  F  P  D  T  H  Y  Y  F  L  H  S  T  S  M  V  G  H  L  M  T  S  V  Q  K  L  W  S  L  T  P  G  I  S  A  L  D  L  V  L  T  V  L  A  S  M  V  S  R  A  Q  P  S  T  R  C  Q  L  A  Y  E  T  N  L  I  *  R  L  D  S  K  P  Y  L  P  H  C  L  L  M  E  I  Q  *  N  A  K  T  V  N  I  T  Y  L  P  G  V  *  H  Y  M  K  L  T  A  G  G  T  I  S  S  V  S  I  P  V  V  G  L  F  *  G  G  M  R  S  R  T  M  S  I  V  K  N  V  G  *  H  F  R  K  R  K  L  R  S  T  R  K  Y  F  T  S  H  *  I  A  L  V  E  *  S  L  K  K  K  R  W :   F  N  I  N  L  W  S  V  P  *  D  L  *  H  A  G  F  V  E  T  W  S  K  Q  G  L  Q  Q  Q  M  *  G  I  A  *  E  D  L  H  S  T  R  V  F  V  D  Q  E  P  P  L  V  I  H  V  G  V  Q  L  C  *  R  I  W  T  Y  T  K  L  Q  S  T  R  K  I  D  H  E  *  I  F  Y  F  F  S  G  D  F  G  Y  K  M  L  V  E  L  *  K  P  T  V  D  S  C  I  H  A  V  V  Y  F  R  L  Y  F  S  F  S  T  T  L  R  V  A  R  G  G  V  D  *  *  F  L  A  P  F  A  V   </first_frame>
            <second_frame>  T  C  I  I  Q  P  W  T  D  H  S  F  N  I  S  E  I  R  N  P  S  H  C  N  R  R  G  E  K  R  I  C  L  E  V  L  *  S  E  K  N  G  F  *  T  E  K  S  E  R  E  A  R  A  R  A  E  G  E  E  T  Q  G  *  I  E  I  G  Q  R  E  E  S  K  T  R  S  Y  S  S  T  *  S  N  *  S  C  S  A  C  S  P  T  *  C  C  *  S  P  S  *   : G  N  P  A  N  *  R  R  T  A  S  W  T  R  S  C  I  L  S  C  F  G  S  C  T  L  *  G  C  W  R  *  N  *  I  A  T  I  L  L  H  *  I  V  *  S  G  C  L  *  Q  G  T  S  T  L  Q  V  V  C  R  S  P  I  L  S  F  G  L  E  G  C  R  A  E  *  A  D  N  A  C  W  S  P  G  V  H  C  R  *  W  C  C  R  A  S  F  P  Y  M  E  *  L  I  S  C  S  L  A  N  G  S  H  G  *  G  V  L  C  L  A  P  K  R  N  L  C  K  T  S  A  S  *  S  R  I  F  *  Y  P  *  S  Q  G  S  S  *  N  K  S  S  S  A  C  D  A  F  R  R  R  C  T  Y  C  *  S  W  C  S  D  I  S  F  T  C  S  *  T  K  T  F  F  E  C  V  C  S  R  N  R  Y  R  G  *  C  N  R  C  *  S  N  C  *  E  H  K  S  A  C  I  A  T  S  R  I  G  Q  V  R  F  W  G  G  C  R  R  K  L  C  I  L  Q  V  P  N  R  R  *  C  L  G  K  N  I  F  R  R  C  R  S  *  G  K  N  R  I  R  E  P  R  W  G  Y  *  P  L  C  F  P  T  P  I  T  I  S  Y  T  A  P  A  W  L  V  I  S  *  H  R  F  K  S  F  G  P  *  L  Q  G  S  R  P  W  T  W  Y  L  Q  Y  W  H  L  W  F  Q  G  H  N  Q  V  Q  G  V  S  *  H  T  R  Q  I  *  F  K  D  W  T  A  S  R  I  F  H  I  V  C  *  W  R  Y  S  R  M  P  K  L  *  T  L  H  T  F  Q  E  Y  S  T  T  *  S  L  L  Q  E  A  Q  Y  H  L  S  A  Y  R  L  W  G  C  S  K  E  G  *  G  R  E  P  C  P  L  *  R  M  W  A  S  I  S  E  R  G  N  *  E  A  Q  E  S  I  S  R  P  T  E  L  P  L  W  N  S  P  *  K  R  K  D   : G  S  T  S  I  C  G  V  S  L  E  T  C  N  M  P  V  L  W  R  H  G  P  S  R  D  F  S  S  R  C  E  G  S  L  K  R  T  Y  T  A  R  E  C  L  W  I  K  N  R  P  L  *  F  M  W  A  F  S  Y  V  E  G  Y  G  H  T  P  S  C  S  P  P  E  K  L  I  M  S  K  S  F  I  S  S  L  V  T  L  D  I  K  C  W  L  N  C  K  N  R  L  L  I  H  V  F  M  Q  L  Y  I  F  V  F  I  F  H  S  Q  P  L  *  G  L  Q  G  E  G  W  I  D  D  F  *  L  P  L  L  *  </second_frame>
            <third_frame>   H  V  *  S  N  L  G  Q  I  I  R  S  I  Y  L  K  Y  V  I  H  R  I  A  I  E  E  E  K  R  E  F  V  W  K  F  C  R  A  R  R  M  D  F  E  L  R  R  A  R  E  K  L  E  Q  E  Q  R  E  R  K  L  K  A  K  L  K  L  D  R  E  K  K  A  K  Q  E  A  I  R  Q  R  E  A  I  E  A  V  Q  R  A  R  R  L  D  A  A  E  A  Q  A  K  :  A  T  Q  Q  I  E  E  E  L  L  A  G  R  G  V  A  F  S  R  V  L  E  A  V  P  Y  E  G  A  G  D  K  I  K  L  P  P  S  C  F  T  E  L  S  D  Q  G  A  F  D  K  G  P  L  H  F  R  L  S  V  V  H  Q  S  S  L  S  D  L  K  D  A  E  Q  N  K  R  T  T  H  A  G  V  L  E  F  T  A  D  D  G  V  V  G  L  P  S  H  I  W  S  N  L  Y  P  A  V  S  P  M  V  P  M  V  E  V  C  Y  V  W  L  Q  K  G  T  Y  A  K  L  Q  P  V  E  A  G  F  S  D  I  P  N  H  K  A  V  L  E  T  S  L  R  Q  H  A  T  L  S  E  G  D  V  L  T  V  N  H  G  V  L  T  Y  H  L  R  V  L  E  L  K  P  S  S  S  V  S  V  L  E  T  D  I  E  V  D  V  I  G  A  D  P  T  A  E  S  T  S  Q  P  V  L  Q  P  L  E  L  G  K  L  D  S  G  V  V  A  E  G  S  Y  V  Y  Y  K  F  Q  I  G  D  D  V  W  G  K  I  S  S  G  D  A  E  V  E  V  K  I  E  S  E  N  Q  D  G  D  T  D  L  Y  V  S  R  H  P  L  L  F  P  T  Q  H  Q  H  G  W  S  S  H  D  I  G  S  K  A  L  V  L  N  S  R  D  L  G  L  G  P  G  T  Y  S  I  G  I  Y  G  F  K  G  T  T  K  Y  K  V  S  V  S  I  R  D  K  S  N  L  K  I  G  Q  Q  A  V  S  S  T  L  S  A  D  G  D  T  V  E  C  Q  N  C  K  H  Y  I  P  S  R  S  I  A  L  H  E  A  Y  C  R  R  H  N  I  I  C  Q  H  T  G  C  G  V  V  L  R  R  D  E  V  E  N  H  V  H  C  E  E  C  G  L  A  F  Q  K  E  E  I  E  K  H  K  K  V  F  H  V  P  L  N  C  P  C  G  I  V  L  E  K  E  K  M  :  V  Q  H  Q  S  V  E  C  P  L  R  L  V  T  C  R  F  C  G  D  M  V  Q  A  G  T  S  A  A  D  V  R  D  R  L  R  G  L  T  Q  H  E  S  V  C  G  S  R  T  A  P  C  D  S  C  G  R  S  V  M  L  K  D  M  D  I  H  Q  V  A  V  H  Q  K  N  *  S  *  V  N  L  L  F  L  L  W  *  L  W  I  *  N  A  G  *  T  V  K  T  D  C  *  F  M  Y  S  C  S  C  I  F  S  S  L  F  F  I  L  N  H  F  K  G  C  K  G  R  G  G  L  M  I  S  S  S  L  C  C  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62399" stop="62692"/>
                    <exon start="67743" stop="69041"/>
                    <exon start="69119" stop="69346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLGQIIRSIYLKYVIHRIAIEEEKREFVWKFCRARRMDFELRRAREKLEQEQRERKLKAKLKLDREKKAKQEAIRQREAIEAVQRARRLDAAEAQAKATQQIEEELLAGRGVAFSRVLEAVPYEGAGDKIKLPPSCFTELSDQGAFDKGPLHFRLSVVHQSSLSDLKDAEQNKRTTHAGVLEFTADDGVVGLPSHIWSNLYPAVSPMVPMVEVCYVWLQKGTYAKLQPVEAGFSDIPNHKAVLETSLRQHATLSEGDVLTVNHGVLTYHLRVLELKPSSSVSVLETDIEVDVIGADPTAESTSQPVLQPLELGKLDSGVVAEGSYVYYKFQIGDDVWGKISSGDAEVEVKIESENQDGDTDLYVSRHPLLFPTQHQHGWSSHDIGSKALVLNSRDLGLGPGTYSIGIYGFKGTTKYKVSVSIRDKSNLKIGQQAVSSTLSADGDTVECQNCKHYIPSRSIALHEAYCRRHNIICQHTGCGVVLRRDEVENHVHCEECGLAFQKEEIEKHKKVFHVPLNCPCGIVLEKEKMVQHQSVECPLRLVTCRFCGDMVQAGTSAADVRDRLRGLTQHESVCGSRTAPCDSCGRSVMLKDMDIHQVAVHQKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62351" e_stop="62692"/>
            <exon e_start="67743" e_stop="68141"/>
            <exon e_start="68936" e_stop="69041"/>
            <exon e_start="69119" e_stop="69535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="0.977"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62351" e_stop="62692" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="67743" e_stop="68141" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68142" i_stop="68935" i_length="794"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="68936" e_stop="69041" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.926">
            <gDNA_exon_boundary e_start="69119" e_stop="69535" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62351" stop="62692"/>
              <exon start="67743" stop="68141"/>
              <exon start="68936" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62388" stop="62692"/>
              <exon start="67743" stop="67879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62414" stop="62692"/>
              <exon start="67743" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62414" stop="62692"/>
              <exon start="67743" stop="68005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="62692"/>
              <exon start="67743" stop="67889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280083" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62450" stop="62692"/>
              <exon start="67743" stop="68021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67778" stop="68121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68955" stop="69041"/>
              <exon start="69119" stop="69535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428810" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTTCAGATATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG : GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAA : AGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG : GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTCGTCTTTATTTTTCATTCTCAACCACTTTAAGGGTTGCAAGGGGAGGGGTGGATTGATGATTTCTAGCTCCCTTTGCTGTGAC</gDNA_template>
            <first_frame> R  V  S  D  I  Y  I  Y  I  Y  I  Y  I  H  V  *  S  N  L  G  Q  I  I  R  S  I  Y  L  K  Y  V  I  H  R  I  A  I  E  E  E  K  R  E  F  V  W  K  F  C  R  A  R  R  M  D  F  E  L  R  R  A  R  E  K  L  E  Q  E  Q  R  E  R  K  L  K  A  K  L  K  L  D  R  E  K  K  A  K  Q  E  A  I  R  Q  R  E  A  I  E  A  V  Q  R  A  R  R  L  D  A  A  E  A  Q  A  K  :  A  T  Q  Q  I  E  E  E  L  L  A  G  R  G  V  A  F  S  R  V  L  E  A  V  P  Y  E  G  A  G  D  K  I  K  L  P  P  S  C  F  T  E  L  S  D  Q  G  A  F  D  K  G  P  L  H  F  R  L  S  V  V  H  Q  S  S  L  S  D  L  K  D  A  E  Q  N  K  R  T  T  H  A  G  V  L  E  F  T  A  D  D  G  V  V  G  L  P  S  H  I  W  S  N  L  Y  P  A  V  S  P  M  V  P  M  V  E  V  C  Y  V  W  L  Q  K  G  T  Y  A  K  L  Q  P  V  E  :  R  M  W  A  S  I  S  E  R  G  N  *  E  A  Q  E  S  I  S  R  P  T  E  L  P  L  W  N  S  P  *  K  R  K  D   : G  S  T  S  I  C  G  V  S  L  E  T  C  N  M  P  V  L  W  R  H  G  P  S  R  D  F  S  S  R  C  E  G  S  L  K  R  T  Y  T  A  R  E  C  L  W  I  K  N  R  P  L  *  F  M  W  A  F  S  Y  V  E  G  Y  G  H  T  P  S  C  S  P  P  E  K  L  I  M  S  K  S  F  I  S  S  L  V  T  L  D  I  K  C  W  L  N  C  K  N  R  L  L  I  H  V  F  M  Q  L  Y  I  F  V  F  I  F  H  S  Q  P  L  *  G  L  Q  G  E  G  W  I  D  D  F  *  L  P  L  L  *  </first_frame>
            <second_frame>  E  F  Q  I  Y  I  Y  I  Y  I  Y  I  Y  M  Y  N  P  T  L  D  R  S  F  V  Q  Y  I  *  N  T  *  S  I  A  L  Q  *  K  R  R  K  E  N  L  F  G  S  F  V  E  R  E  E  W  I  L  N  *  E  E  R  E  R  S  *  S  K  S  R  G  R  G  N  S  R  L  N  *  N  W  T  E  R  R  K  Q  N  K  K  L  F  V  N  V  K  Q  L  K  L  F  S  V  L  A  D  L  M  L  L  K  P  K  L  R :   Q  P  S  K  L  K  K  N  C  *  L  D  E  E  L  H  S  L  V  F  W  K  L  Y  P  M  R  V  L  E  I  K  L  N  C  H  H  L  A  S  L  N  C  L  I  R  V  P  L  T  R  D  L  Y  T  S  G  C  L  S  F  T  N  P  L  F  R  T  *  R  M  Q  S  R  I  S  G  Q  R  M  L  E  S  W  S  S  L  Q  M  M  V  L  *  G  F  L  P  I  Y  G  V  T  Y  I  L  Q  S  R  Q  W  F  P  W  L  R  C  V  M  S  G  S  K  K  E  L  M  Q  N  F  S  Q  L  K :   E  C  G  L  A  F  Q  K  E  E  I  E  K  H  K  K  V  F  H  V  P  L  N  C  P  C  G  I  V  L  E  K  E  K  M  :  V  Q  H  Q  S  V  E  C  P  L  R  L  V  T  C  R  F  C  G  D  M  V  Q  A  G  T  S  A  A  D  V  R  D  R  L  R  G  L  T  Q  H  E  S  V  C  G  S  R  T  A  P  C  D  S  C  G  R  S  V  M  L  K  D  M  D  I  H  Q  V  A  V  H  Q  K  N  *  S  *  V  N  L  L  F  L  L  W  *  L  W  I  *  N  A  G  *  T  V  K  T  D  C  *  F  M  Y  S  C  S  C  I  F  S  S  L  F  F  I  L  N  H  F  K  G  C  K  G  R  G  G  L  M  I  S  S  S  L  C  C  D </second_frame>
            <third_frame>   S  F  R  Y  I  Y  I  Y  I  Y  I  Y  T  C  I  I  Q  P  W  T  D  H  S  F  N  I  S  E  I  R  N  P  S  H  C  N  R  R  G  E  K  R  I  C  L  E  V  L  *  S  E  K  N  G  F  *  T  E  K  S  E  R  E  A  R  A  R  A  E  G  E  E  T  Q  G  *  I  E  I  G  Q  R  E  E  S  K  T  R  S  Y  S  S  T  *  S  N  *  S  C  S  A  C  S  P  T  *  C  C  *  S  P  S  *   : G  N  P  A  N  *  R  R  T  A  S  W  T  R  S  C  I  L  S  C  F  G  S  C  T  L  *  G  C  W  R  *  N  *  I  A  T  I  L  L  H  *  I  V  *  S  G  C  L  *  Q  G  T  S  T  L  Q  V  V  C  R  S  P  I  L  S  F  G  L  E  G  C  R  A  E  *  A  D  N  A  C  W  S  P  G  V  H  C  R  *  W  C  C  R  A  S  F  P  Y  M  E  *  L  I  S  C  S  L  A  N  G  S  H  G  *  G  V  L  C  L  A  P  K  R  N  L  C  K  T  S  A  S  *   : K  N  V  G  *  H  F  R  K  R  K  L  R  S  T  R  K  Y  F  T  S  H  *  I  A  L  V  E  *  S  L  K  K  K  R  W :   F  N  I  N  L  W  S  V  P  *  D  L  *  H  A  G  F  V  E  T  W  S  K  Q  G  L  Q  Q  Q  M  *  G  I  A  *  E  D  L  H  S  T  R  V  F  V  D  Q  E  P  P  L  V  I  H  V  G  V  Q  L  C  *  R  I  W  T  Y  T  K  L  Q  S  T  R  K  I  D  H  E  *  I  F  Y  F  F  S  G  D  F  G  Y  K  M  L  V  E  L  *  K  P  T  V  D  S  C  I  H  A  V  V  Y  F  R  L  Y  F  S  F  S  T  T  L  R  V  A  R  G  G  V  D  *  *  F  L  A  P  F  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62399" stop="62692"/>
                    <exon start="67743" stop="68141"/>
                    <exon start="68936" stop="68971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLGQIIRSIYLKYVIHRIAIEEEKREFVWKFCRARRMDFELRRAREKLEQEQRERKLKAKLKLDREKKAKQEAIRQREAIEAVQRARRLDAAEAQAKATQQIEEELLAGRGVAFSRVLEAVPYEGAGDKIKLPPSCFTELSDQGAFDKGPLHFRLSVVHQSSLSDLKDAEQNKRTTHAGVLEFTADDGVVGLPSHIWSNLYPAVSPMVPMVEVCYVWLQKGTYAKLQPVERMWASISERGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69277" stop="69483"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMWAFSYVEGYGHTPSCSPPEKLIMSKSFISSLVTLDIKCWLNCKNRLLIHVFMQLYIFVFIFHSQPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="69463" PGL_stop="69126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69463" e_stop="69126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="69463" e_stop="69126" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69463" stop="69126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAAGACGAAAATATACAACTGCATGAATACATGAATCAACAGTCGGTTTTTACAGTTCAACCAGCATTTTATATCCAAAGTCACCAGAGAAGAAATAAAAGATTTACTCATGATCAATTTTTCTGGTGGACTGCAACTTGGTGTATGTCCATATCCTTCAACATAACTGAACGCCCACATGAATCACAAGGGGCGGTTCTTGATCCACAAACACTCTCGTGCTGTGTAAGTCCTCTTAAGCGATCCCTCACATCTGCTGCTGAAGTCCCTGCTTGGACCATGTCTCCACAAAACCGGCATGTTACAAGTCTCAAGGGACACTCCACAGATTGAT</gDNA_template>
            <first_frame> K  *  R  R  K  Y  T  T  A  *  I  H  E  S  T  V  G  F  Y  S  S  T  S  I  L  Y  P  K  S  P  E  K  K  *  K  I  Y  S  *  S  I  F  L  V  D  C  N  L  V  Y  V  H  I  L  Q  H  N  *  T  P  T  *  I  T  R  G  G  S  *  S  T  N  T  L  V  L  C  K  S  S  *  A  I  P  H  I  C  C  *  S  P  C  L  D  H  V  S  T  K  P  A  C  Y  K  S  Q  G  T  L  H  R  L   </first_frame>
            <second_frame>  N  K  D  E  N  I  Q  L  H  E  Y  M  N  Q  Q  S  V  F  T  V  Q  P  A  F  Y  I  Q  S  H  Q  R  R  N  K  R  F  T  H  D  Q  F  F  W  W  T  A  T  W  C  M  S  I  S  F  N  I  T  E  R  P  H  E  S  Q  G  A  V  L  D  P  Q  T  L  S  C  C  V  S  P  L  K  R  S  L  T  S  A  A  E  V  P  A  W  T  M  S  P  Q  N  R  H  V  T  S  L  K  G  H  S  T  D  *  </second_frame>
            <third_frame>   I  K  T  K  I  Y  N  C  M  N  T  *  I  N  S  R  F  L  Q  F  N  Q  H  F  I  S  K  V  T  R  E  E  I  K  D  L  L  M  I  N  F  S  G  G  L  Q  L  G  V  C  P  Y  P  S  T  *  L  N  A  H  M  N  H  K  G  R  F  L  I  H  K  H  S  R  A  V  *  V  L  L  S  D  P  S  H  L  L  L  K  S  L  L  G  P  C  L  H  K  T  G  M  L  Q  V  S  R  D  T  P  Q  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69462" stop="69127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKDENIQLHEYMNQQSVFTVQPAFYIQSHQRRNKRFTHDQFFWWTATWCMSISFNITERPHESQGAVLDPQTLSCCVSPLKRSLTSAAEVPAWTMSPQNRHVTSLKGHSTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="75188" PGL_stop="74452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75188" e_stop="74452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="75188" e_stop="74452" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75188" stop="74452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75188" stop="74492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75188" stop="74493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCCAGTGTATAGACCAAGAATGACTCGCGCCTTTCACAAAAGAGTAAGAACCAGAAAATTTGAAAGTTGGTCAGTTGGTTCTTAACCGTATTTTTCCTCATCAAGACGAGTACCAAGGAAAGTTCCCAACAAACTG</gDNA_template>
            <first_frame> *  L  G  E  W  M  S  S  A  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  L  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  S  Q  L  F  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  Q  C  I  D  Q  E  *  L  A  P  F  T  K  E  *  E  P  E  N  L  K  V  G  Q  L  V  L  N  R  I  F  P  H  Q  D  E  Y  Q  G  K  F  P  T  N   </first_frame>
            <second_frame>  S  L  G  N  G  C  H  R  P  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  L  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  *  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  N  F  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  S  V  *  T  K  N  D  S  R  L  S  Q  K  S  K  N  Q  K  I  *  K  L  V  S  W  F  L  T  V  F  F  L  I  K  T  S  T  K  E  S  S  Q  Q  T  </second_frame>
            <third_frame>   A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  K  S  T  F  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  P  V  Y  R  P  R  M  T  R  A  F  H  K  R  V  R  T  R  K  F  E  S  W  S  V  G  S  *  P  Y  F  S  S  S  R  R  V  P  R  K  V  P  N  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75186" stop="74503"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRKSTFYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGPVYRPRMTRAFHKRVRTRKFESWSVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101279" PGL_stop="101813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101279" e_stop="101813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="101279" e_stop="101813" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101279" stop="101813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  Y  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  R  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  V  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  S  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101312" stop="101530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLYDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="102117" PGL_stop="102502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102117" e_stop="102502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="102117" e_stop="102502" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102117" stop="102502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102119" stop="102436"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRGIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102117" stop="102365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGEVFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102202" stop="102450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRARYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="124002" PGL_stop="123617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124002" e_stop="123617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="124002" e_stop="123617" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124002" stop="123617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGCTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  L  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  S  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  A  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124000" stop="123683"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRAIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124002" stop="123754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGELFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123917" stop="123669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRASYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="124840" PGL_stop="124306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124840" e_stop="124306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="124840" e_stop="124306" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124840" stop="124306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  Y  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  R  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  V  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  S  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124807" stop="124589"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLYDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="130925" PGL_stop="131719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130925" e_stop="131719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="130925" e_stop="131719" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130925" stop="131665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130984" stop="131719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130984" stop="131679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130984" stop="131678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  A  L  A  I  C  S  L  G  N  G  C  H  R  P  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  L  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  *  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  N  F  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  K  S  T  F  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  R  L  G  H  L  *  L  G  E  W  M  S  S  A  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  L  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  S  Q  L  F  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130926" stop="131717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRKSTFYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 267 chains have been computed
$ 
$ memory statistics:
$ 566128 bytes spliced alignments in total
$ 104 spliced alignments have been stored
$ 5443 bytes was the average size of a spliced alignment
$ 29864 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1493 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 336 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:10:13
-->
