<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:10:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599814" ref_strand="+" ref_description="SGN-U599814 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatctctcgagggggggcccggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="305" stop="1298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="605" g_stop="995" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U599814" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="605" e_stop="995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="6102" stop="6879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6402" g_stop="6578" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6402" e_stop="6578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="6317" stop="7409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6617" g_stop="7109" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6617" e_stop="7109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="7578" stop="8994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7882" g_stop="8694" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7882" e_stop="8694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10098" stop="7711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9799" g_stop="8935" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8934" i_stop="8588" i_length="347">
            <donor d_prob="0.120" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8587" g_stop="8011" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1436" r_length="576" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>1442</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9799" e_stop="8935"/>
          <exon e_start="8587" e_stop="8011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCCTGTTTATGGAGAAGTATATCCCCCGGACTTTTTGAGGGATAGGAAAAGAGATGAATTTTTGAGCTTAGAGCAAGGTAGGATGTCTGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCAGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTATGAAGGGGTTGAGGTCAGAACTGCGGATTTTAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCCAAAACTGTGATGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTAGGTGGTCCGTGAGTTTCAGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGGGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTGAAGAACAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCCATTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCTGGTTATCATCAATTGAAAATACGGACAAGGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGACATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAAC--TTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCG-TG--ATAGAGG...........................................................................................................................................................................................................................................................................................................................................................TAGAGGGAGTGAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10111" stop="8783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9811" g_stop="9057" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9811" e_stop="9057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCCTGTTTATGGAGAAGTATATCCCCCGGACTTTTTGAGGGATAGGAAAAGAGATGAATTTTTGAGCTTAGAGCAAGGTAGGATGTCTGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCAGTATGCCACCCAACTTTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGAC--TTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10065" stop="8910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9765" g_stop="9210" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9765" e_stop="9210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="10280" stop="11207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10580" g_stop="10908" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10580" e_stop="10908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAA-CATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584245" ref_strand="+" ref_description="SGN-U584245 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|22325483|ref|NP_671778.1| (e_value=2e-79) threonyl-tRNA synthetase -related [Arabidopsis thaliana]; (*ATH) AT2G04842.1 (e_value=2e-81)  Symbol: None | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative, similar to SP:P18256 Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Bacillus subtilis}; contains Pfam profiles PF00587: tRNA synthetase ... ; (*SWP) sp|Q55806|SYT_SYNY3 (e_value=1e-59) Threonyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=thrS; ">
      <seq>ttgaactgtgcaagtaaaatatgaggaaacaaaagctcaaccacagaaatcacaagactcaaagcaacatcattacccaaaagcagctcaaatgaagtacgttggcgctctggggaaaacaatggcgttatcactatcttcacgctctctcttcacttcctcttataaatccatttctcctctcagtagaaaccccttttcttccttcccaattcgtcagtatcgtattctttttgttcttgatccctctaacaacaacaacaacaacaaaactaaccggaacaagttgctgagacgtcgcacttctttctctacccatgcttccaccgccctacaagaagctcctgccccaaatgagaaaatggttctcccaactaacgagtcatcagatgggctacttcgaattcgccatacgtgtgctcatgttatggccatggcagtccaaaaactctacccgaatgcaaaagtgacaattgggccctggatcgataatggtttttattatgattttgatatggagcctttgactgacagtgacctgaagaggattaagaaggaaatggatcgaattatcagccgaaacttgcctcttgttagagaagaagttagccgggatgaagctcaaagaagaataatgtctatcaacgaaccttacaagatcgaaattttagagagcataaaggaggaaccaattaccatttatcatattggtgatgaatggtgggatctttgtgcgggacctcatgttgaaactacaggaaagattaacagaaaagctattgagcttgaatctgttgctggtgcttactggaaaggaaatgtaaagaaaccaatgcttccaagggatttatggcactgcatgggagaatgaggaccaattaaagcataccttcttttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15536" stop="19453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15836" g_stop="16250" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16834" g_stop="16980" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="562" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17136" g_stop="17283" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="710" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17284" i_stop="18959" i_length="1676">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18960" g_stop="19153" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="904" r_length="194" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U584245" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15836" e_stop="16250"/>
          <exon e_start="16834" e_stop="16980"/>
          <exon e_start="17136" e_stop="17283"/>
          <exon e_start="18960" e_stop="19153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTGTGCAAGTAAAATATGAGGAAACAAAAGCTCAACCACAGAAATCACAAGACTCAGAGCAACATCATTACCCAAAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACGGTAATGTTGATACTGGTTCCGTTTATGGGTATTCATGAAATTGAATTGTTTCCAGTTTTATCGTGTTTATAATTGAAAATATTAAGTGGGTCGATTACAGAAATTAGTATTGCTTAGTATATATACATTGTTGCTCAATATAGTTATCAGTAAAAAAATGCGTTTTTTATACTGTTTCCTAGATTACAGAAAGCTAATTTTCTTGTGAAGTAACTTGTTTAGTTTATAACTCATTGTATACTCCTTGTACATTTGTTGGATTTGGGAAGTTTGATTTTTTTTTAATAAGTGTGGTTTCCAACCCAGCTTGTGTGCACCTTTGACTAATTTCATAGGTAAATTTGTCTACCAAGGAAAAGAAATCATTTAATGTTGATTTGGGGAGTTTTTTTTCTTTTATTATACTCTATTAATGTTGTCGGATATGAGGTTTGTATTATCTGTTGCTTGTTTTTAGCGAGGATTGGTGTGTTTACTAGTTCATTATGTAGAATGCTGAGTTTTTATAGTTTAAATGTGACCAGTAGATTTTGGTAATATAAATTACCATTCTGAGGGTGGGTTGATGTGTTCTTTGCTGCAGTGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATGGTAAGCTAACTTGTGCTTTTTAGTGATTGTTAGAAAGTTACTCCCTCTGCCTCCCCACAAGGGTCCACTCCCCCTAAAGAACTAAAAAATAGTTTGATCTTGTCAATGAAGCTTTGATTTTTGGTTAGAGAATTGACATCTTAAATTTTCTCTAGGATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTGGTAAGACTTCGATTAATTGCTTCTGTTTAGTTTGAGAAACTTACTACGACGTACTTAATGTCATCCCACAAGTTTAGGAACTTGAATATAAAATATTACTTTAGCATATTGTACATGTTTTCTAACTAACACGATATGAACTTTTACTTTATGGTTGTATATGACTCATAAATGAGATTTGATCATGGGGAGTTAATTGAGAACCATAAACACTATATATTTCAGGACTTCACCCGGTGATTCGTTGAAATGAGTATCTTAAGTGCTCCGAATGATCTCAATAGAAGATTGTGGTATTCCACTTGAGCATTTTTGAGTGTATGAACCTTATCTATCTCTTGAGGATCTACTATTATACATGTTGACCTTAACTTAGTAGCTGTCTTGATGTCATTGTTATTTACAAATCATCATATGGTGGAGTGCTAGAGTAATTCTCGGAGGAAAACTTTTGGTCTTTGCTGCTAATTACATCCTTCCTGAAAGTGTTTCAAGTGGAATTTTCAGTACCCACCCTAGTAATTGTTGCAGGTTGTTCTGAATATATCGTTCTTTTGGTGAATTATATAGTTACTTCTTAATATTGCTAAAACATCAGGTTAAAAAATATTTTTATGTCAAGTATTATATTTCATTCTGTTCTGTGCTAAATTCACTTATACTTGTAACCAAGTCAAATGTTTTCACTTTAAGGGAATTTCATTTCTCGATATAGAAACTTACGTTTGTGGATGGCCAAAGGGATGTCATGGGAAGTGTTCCATGAACAGGTAAGTGAAGTTTCAGAGTTCCATCACAAAGGCTGTTAAGAAAGATATTGGCTCACTTTATGTCATAATGCACGAATTGAATCTAATGCTTAGATGGAAGGATGTAAAATATTGATATTGTAATAGTGCAATGAGTTCTGCAAGTTAGGTTGTTATTACTATTGTTAGTGCTAAAAAGAGAGGGAAACTGAATCTTGTACCTGGACGCCAGATGACTTGAACCTGGCTGGACTCATAGATAGTTGATTCGTAGTAAAATCTTACTTTTAATATTCCTGAACTTCTACCTCTTACTAAAACTTTGCCATTGAAGCCTTGTACCCCACCCTGGAAGCTTTGACAATTTTGCAGAGGTCTGCGGTGTGAGAACATGAGTCGTTAAGGTCAGAGTCAGCCAAATCAACTCTCCGGGATCTGGTCTCAATCCTTGTGGTACCAGATCAAAGTCAATAGTCCTTACCGTGCAAGAATCAAGCTTACATGCTGTTATTGGTGCTAACAATTATTGTTACTATAATACTTTTCAACTAAAAAGTGCTTCAGAAAATGTAGAATATGTGAACTTACTTAAAGAATTTACCAGCTGCTTCTCTAGAACATCATTTTTACAGCATTATTTTAGATATAGTTGACAGATTAGGATTCGATCGAGGAAGGGATTAAGACTTGTTAGAGGTGGACAAAGAAGGTTAAGTTTGGACTTCTCTAGCTAAAATTATCCATCAAAATGTAGGTTTAAGCCAATATTTGCATATCCATCCTTTATAAACCATAAAGCACCCAAGAGAGCTTCATCTCGTTGTTTGCTGAACTTGATCTGATTGTGGAAACATCCACATAAACCTATTGCTTTAACAACAAAGTACATTTTGCCTTTTCTCATGGTCAAATGCTTTCTTTTCGTAGGTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAGAGGAGATGTAAAGAAACCAATGC-TCCAAAGGATTTATGGCACTGCATGGGAGAATGAGGACCAATTAAAAGCATACCTTCATTTCAAAGAA</genome_strand>
        <mrna_strand>TTGAACTGTGCAAGTAAAATATGAGGAAACAAAAGCTCAACCACAGAAATCACAAGACTCAAAGCAACATCATTACCCAAAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG...........................................................................................................................................................GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAAAGGAAATGTAAAGAAACCAATGCTTCCAAGGGATTTATGGCACTGCATGGGAGAATGAGGACCAATT-AAAGCATACCTTCTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602635" ref_strand="+" ref_description="SGN-U602635 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttaatcataaggggaggtcacaaaataatagattgaattcatgtattcctttattttcctctctatttgctctgaggttcacaactatgttcaaaatcatacatgaatgactgacctaatacattaaatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="23372" stop="22642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23077" g_stop="22942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U602635" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>136</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23077" e_stop="22942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTCATAAGGTGAAAATCACAAAATAATAGATTGAATTCATGTATTCCTTTATTTTCCTCTCTATTTGCTCTGTGGTTCACAACTATGTTCAAAATCATACATGAATGACTGACCTAATACAATAAATCATTC</genome_strand>
        <mrna_strand>TTTAATCATAAGGGGA-GGTCACAAAATAATAGATTGAATTCATGTATTCCTTTATTTTCCTCTCTATTTGCTCTGAGGTTCACAACTATGTTCAAAATCATACATGAATGACTGACCTAATACATTAAATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567096" ref_strand="+" ref_description="SGN-U567096 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|92429505|gb|ABD93499.2| (e_value=2e-83) cell; (*ATH) AT2G04780.1 (e_value=2e-63) | Symbol: None | fasciclin-like arabinogalactan-protein (FLA7), identical to gi_13377782_gb_AAK20860 | chr2:1676975-1678452 FORWARD | Aliases: F28I8.18, F28I8_18; (*SWP) sp|Q9SJ81|FLA7_ARATH (e_value=1e-62) Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7; ">
      <seq>ttacacattctttttctctttaaatactctctttgtatactaaactccatacccttttgctctcaagcctttcctctctctctcagcttctctgtttcaaggggtcagtgagtgtgaaaatgggctactccagggttcttattgttagtagtctacttctagtgtttcaattatcaactgtagtggcgaaaggcaaagcgattggatctccaatcatggcaccagcaccagcaccaggtcctgaatacacaaacctaacggacttactctccgttgcagggccttttcatacattccttaactaccttgtatcgactaaagtcatcgagactttccaagcccaagctaacaatacagaagaagggatcacactttttgttcctaaagactcagcctttacctcactgaaaaagccctcactttccaatcttacctcagaacaacttaagtccctttgccttttccacgcattgccacattactatagtctagctgatttcaagaaccttagtgatgttagccctattaataccttggctggagggaacttatactctttgaacttcaccgatgactctgggaccgttcatcttaactcaggatggtctaggactaaagttagcagcgctgttcgcaccacttatccagttgctgtttatcaggtggacaaggtacttcttcctgaagccatattcgggacggatttaccaccaatgccagctccagcaccagcaccagtaacggatatcgcccctactgctgatagtccagctgctgatcaaacaggcaaagctagagcaccagcatcgcctgattcatcgtcaccatcagcttctcacaagatgatgagctggggcattttgaaacatttggttttggcaattggtggtggattcttgatgtttttcttgtaatgaaaaatgatgtcttattctgttaaattaatgttgaacatcatggtacatctgttttttcttattggtttggatatactccacacattggggatttagtattggtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="27041" stop="24742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26741" g_stop="26641" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25964" g_stop="25042" g_length="923"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="1024" r_length="923" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U567096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1024</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26741" e_stop="26641"/>
          <exon e_start="25964" e_stop="25042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACATTCTTTTTCTCTTTAAATACTCTCTTTGTATACTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAGGTCTGTTTTTAATCTTTGCATTTTTTTCTATTATAATATTTGTATTATTTTGTTCTTTTTTGTGTATGTGTATGAGGGGTAGTGGGATTTTTTTGTGGGGGTGGGGTGTGTATGACTGGATCTGGATCTGTGTTCTTGTTCTTGTTTAGTCAGCTTCATGTCTCTGCATTGTTTTCCTCAAAGATATTGAAAGTTGTAATTGACATTGTAACATCTAGAAGTTTCTTTTTCTTGTTTTTTTTTTTAAAAATTTTTACTGTTATATCTGCTTAATTTTGTCTTTGCATGTCTATCTGTATGAACAACTTCATCTAAGAATTTTTCAAGAATTGAGTTGATGAGTTACAATTATTTTATACTCAAATTGTTTGCTAGCTCATTTTTTTTTTCAAGAAGATTTTGTTGTGGTGAGTATGAAAATGTACCTTTCAAAAGGGAGATACAAGTTTTGCCCTCAAGAAAGTTATGTAGTTGAAATGTTGAGATCTAACTAAAAGGGTGTCTAGATAACATAATATTTGAGTTTGGGTTAGTCCTGTTTTGGTTTAGTTTAAGCTAAAGATGCTAACTTTATGTCATTTTGCTTTGATTTTGGATTAGTTTAAGCTAAAGATGCTAACTTTATATCATTTTGCTTTGATTTTGGTTTACTTAATGATGGATCTTGAATTTGTAGGGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACT</genome_strand>
        <mrna_strand>TTACACATTCTTTTTCTCTTTAAATACTCTCTTTGTATACTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTGGATATACTCCACACATTGGGGATTTAGTATTGGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564506" ref_strand="+" ref_description="SGN-U564506 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157348961|emb|CAO24039.1| (e_value=0) unnamed; (*ATH) AT4G15420.1 (e_value=0)  Symbol: None | PRLI-interacting factor K, nearly identical to PRLI-interacting factor K (Arabidopsis thaliana) GI:11139266; contains Pfam profiles PF03152: Ubiquitin fusion degradation protein UFD1, PF00096: Zinc finger, C2H2 type | chr4:8823725-882... ; (*SWP) sp|P70362|UFD1_MOUSE (e_value=5e-21) Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l; ">
      <seq>tatatatatatatatatatatatatatacatgtataatccaaccttggacagatcattcgttcaatatatctgaaatacgtaatccatcgcattgcaatagaagaggagaaaagagaatttgtttggaagttttgtagagcgagaagaatggattttgaactgagaagagcgagagagaagctagagcaagagcagagggagaggaaactcaaggctaaattgaaattggacagagagaagaaagcaaaacaagaagctattcgtcaacgtgaagcaattgaagctgttcagcgtgctcgccgacttgatgctgctgaagcccaagctaaggcaacccagcaaattgaagaagaactgctagctggacgaggagttgcattctctcgtgttttggaagctgtaccctatgagggtgctggagataaaattaaattgccaccatcttgcttcactgaattgtctgatcagggtgcctttgacaagggacctctacacttcaggttgtctgtcgttcaccaatcctctctttcggacttgaaggatgcagagcagaataagcggacaacgcatgctggagtcctggagttcactgcagatgatggtgttgtagggcttccttcccatatatggagtaacttatatcctgcagtctcgccaatggttcccatggttgaggtgtgttatgtctggctccaaaaaggaacttatgcaaaacttcagccagttgaagcaggattttctgatatccctaatcacaaggcagttcttgaaacaagtcttcgtcagcatgcgacgctttcagaaggcgatgtacttactgttaatcatggtgttctgacatatcatttacgtgttcttgaactaaaaccttcttcgagtgtgtctgttctagaaacagatatagaggttgatgtaatcggtgctgatccaactgctgagagcacaagtcagcctgtattgcaacctctcgaattgggcaagttagattctggggtggttgcagaaggaagctatgtatattacaagttccaaataggcgatgatgtctggggaaaaatatcttcaggagatgcagaagttgaggtaaaaatagaatcagagaaccaagatggggatactgacctctatgtttcccgacacccattactatttcctacacagcaccagcatggttggtcatctcatgacatcggttcaaaagctttggtccttaactccagggatctcggccttggacctggtacttacagtattggcatctatggtttcaagggcacaaccaagtacaaggtgtcagttagcatacgagacaaatctaatttaaagattggacagcaagccgtatcttccacattgtctgctgatggagatacagtagaatgccaaaactgtaaacattacataccttccaggagtatagcactacatgaagcttactgcaggaggcacaatatcatctgtcagcataccggttgtggggttgttctaaggagggatgaggtcgagaaccatgtccattgtgaagaatgtgggctagcatttcagaaagaggaaattgagaagcacaagaaagtatttcacgtcccactgaattgcccttgtggaatagtccttgaaaaagaaaagatggttcaacatcaatctgtggagtgtcccttgagacttgtaacatgccggttttgtggagacatggtccaagcagggacttcagcagcagatgtgagggatcgcttaagaggacttacacagcacgagagtgtttgtggatcaagaaccgccccttgtgattcatgtgggcgttcagttatgttgaaggatatggacatacaccaagttgcagtccaccagaaaaattgatcatgagtaaatcttttatttcttctctggtgactttggatataaaatgctggttgaactgtaaaaaccgactgttgattcatgtattcatgcagttgtatatttttgtctttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62062" stop="69760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62362" g_stop="62692" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67743" g_stop="69041" g_length="1299"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="1630" r_length="1299" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69119" g_stop="69463" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1631" r_stop="1975" r_length="345" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U564506" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1975</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62362" e_stop="62692"/>
          <exon e_start="67743" e_stop="69041"/>
          <exon e_start="69119" e_stop="69463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAGGTCAGTTTTTCCGATACGCCCCTTTTCTCCATAGTTTAATCGATTTGGGAGTTGGGTATTTTTCGAATTTGCTGATAGTGCTTAGTTGGGTTATGGGTGTTTAGTATATTGATCTCTTTAAGACCAGTTGTTCTAACTTACTGTAATTGTAGGTCTTAAATTGCTCTTTATTATTTCAAGTTTGTATTTTGAACATATAATTCCAACAAAGGAGAATCGTTATCAAACAGTTTACTTGAATATGTGCATTTGTACCTGAAAGTTGCTACCCCATTGTATTTTGTTGCATCATCATCTCATAAATCAAATTTTAGTGACTCATGAATTCTTTAAGAAAGAAGTTTGATCTTTTTGAGATCTGTCATATATTGGCCTTCAGTGAGATTAGATACTGATGGAAAGTGAGAATTCGTTAGTATGTTTCCTTCATGTGAATTTGTTTGCTACAATGCCATGAAGATGGATGATCTGCAAGGTGCCTAAAATGACTATAGTGTTTCTAAGGGGTGTTAAATTTGAAGATTGGGATATACTGTGGTGTAGTAATCCCTCGGTATGAGGATAGGTGTTGGGTAATGCCAACAAGGCCCACGAGGGGCTGTAGATTTGAAAATTGGGATATACTGTGACGTAGTAATCCCTTGGTATGAGGATAGTCGTTGGGTAACACCAACATTATGCCTATGTTAAGGCCCACGAGGGGATGCGGTGGCCTGGGTCCAACGTCATGATCGAACATGGCGCTTGCTGGGTGGACTTAGCTAAGAAATAAAGCTGCGCATTTGCTATCAGCTATAGCTTTTGGCTTGATGGTAAGCGTTTAATCTTAACAATAGGGTTAAAAAACTGAAAAGGCAAAAAGGAAAGAAGGGGAGGTTTCCTAAGGGGTGTTGGATAAAAAAGTGAAAAGACAGAGAGAAAAGTGGTGGTGTTTCTAAAGGGTGTTAGATTTGAAGACTGGAATATACTGTAATGCAGTAACCCTGGGCATCAGGAATCCAGGATACATTTTAAAAAGTGAGAACTCAAAAAGGAAAAGAAGTGGAGTTCATGGATGGAGGCAGTCATAGTCGAAGTTGTCCTTTTCCAATTATATTAGCAAGAAGGGCATGAAAAAATTTATGGGAGAATGTTTTTCCACTGGGATAGAAAGTTTTTCGTAATTTTTCTGGTGAAAAGTGGGGTGATGTATGAATTTTAAGTGATCCCTTTAGAGAAGTTATCTTTTTGTGTTAATGTCAATACCATTGACCTAGCATGTTATAGTTCTTCCCACAGATATTGTTTTTAAAACTTTGAATGTATTTGTGGTGGTATTTCCACCGTACGAAATTTTGCTGGAAATTAGCTTCAATCGCTTTATTGTTTTATATATTATTCCCTGATCATTGGAAACAATTTTCACTGGCACAAGGATCTCTTCAGAACAGCCCACTATGATTGAAATTGACAATGCATTTACAAAGGCTTCAAATAGTGCAGGATAGGTTGACCTTTGTGCTGTTCTGGAATAGGTTAATTGCTGGAGACAAGAATGAATGAACCTAGTTGCAAGAACATGGCTTACTCTGATTGTCTTTATCCTAGAAAGAGTTGAAATAGAATTGACTTGGATTCGGAACCGCTATTCAAAATCTTGGTGAAGCACTGCATTTGTTATCTCATGTCTGCTTTTCATGAAAAAATTATCATTGAACCCCATCTCAGCTGTATTATTGCAAAAAATGATTTGAGTAGTTAACTTGTGGGTAAAAGTTGGGCCTGTTGATTTATTTTTAGTTTGTTAGAATGAATGATAAGTAGAATTGTGGCTTAAAGGGAAAACTGATGCATTTCAGTCGTTGCAGGGTTTGTGGTATAACCATCTAGATCTGAGTGCGGTTGAATGTACGTATAATTTTCCGTGGTAATGATTTAAAAGGTAGTCCAGTTGCCGTGCTTGAGTATAAGTTAAATCTACAGCTTTCAACATCTAGGGAAAAAACTCTTCACGTTCTTCCGGTATGCAGACTGTAGGGGCCTTATTTTTCTTTTAAGGAACATTTATTGTATTGGGATCATGAACACGTGAAAAATAAGTATGCAAGACAGGATTAAGATATGAACTTTGTGACATATAAGCATTTTAATGGAGGTTAGATACAATGACAATGTTGTGCTAGCGAACAGAGATGTATTTCGGCTGCTTGAGATGTGGTAGATCTGCTTCAGGTGGTTTTTTCCTCTCTAGAACAAGAACAAGAAAAAGGAGGGGTGGGGTGGGGGTGTGGGGGGGGGGGAATAGTTTAACTACCACAAGTGTCTTGTGATCTATATCAGATACTTATTAAACTAAATGCTACCTGCCATGTTAAGAAATGAAGTGATGGTAATTGGCTAGACAACTGTTCAACAATAAAATAACAGTTGATATTTGCGGACTTATTACCACATCATTTATTAGTTTTTAATTGATTAAATATGAAAGCAAGCACATTTTACCTGGATACCTAGTAAGTTAAACTACTTATTTCCCATCGGGAGAATCACTTAAAAATTTATTTCATTTGTCCTTTACCAGTTCTACTTGCCACACCTTGAAGTTTTTTGACAAGTTAAGAATTTTTACAATATGTTTTTATTTATTTTCTGCTTACTTTCTTCAGCTGTGAGCAGTTTTCTTTACAGAAACAAACTTGTTAACACATTATATTTTCAAACCATCTCCAATTTTACTTCTCACTTGTGCTTGGGTAAACCACATAATTGCAACCTGCTCAACATATGGATTTTTTTGTAATGTAAGCTGTACTCAAGTCAGATTTGCTATATTGCCGTGTCTTTCTTTTGATTGATAAGGTAAAAATATTATCATTAAAGGTATCAAGAAGGTACATAAAAGAAAGTTCCAAAAATAAAGAAGTTATATAGAAGTACAACAAAATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCAATTGAGTCCAAAAAGCCTATACTGATCCATGTTTTCTAATAAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCAGAGAGCCCGTGTAATGAACTCCAGTTGCAAATTCCCGATTGAGTCCAAAAAGCCTATATACTGATCCATATTTTCTAATAACTCTTCTTACACCAAAATAACAGATTATGAAGACAAATGTCCATCACTAATCACTCTAGAGATGTGGTTCTTTCTATTATCAAACAAATCAAACACTGTTCCTTTCTTCTCAAATAGTCTGGAAGGTGCATAAAGGGATAGCCCTCCAGATCTGCTTCTGAGATTTAGCTGTCTTCTGCTCATTCCAGGATTTCCAGCTCTCCAGTGAACTCTTTAACATCTGAAGGCATTACCCAAACAACACCACACAAATTCAGGATCATCTTCCAGCATTGTTTAGCAAATTTACATTGAATATTGACCGACATCAATTTCACTTCACATATATAACACCTGCGACTCAAATTTAAACCTCTCCTTTGCAGATTATCTTGGGTTAAGTATATTTATCTGTTGAGAACCCATGCAAAACAGGCTACTTTGCAGGGGCTTTAGTCCATATCAATTTCCATGGCCTAATTGTCTCAATTCACAATTGATTGCTATATTGTTATGCCTTAACAATTGATTTTCTGAAAACCTGTGTGTGTGTTCAAAGCAGAGCAATATTTTCAAATTTCTAGGTCAATTTTACAATGTTCTGCATGTGCATTACACAAAAATAAAATAATATCAACCCCTCGGGGGTAAGTGTGGTTAGCAAGAATGTGTTTGAATCAATCAAGTATAGATGCCCTCCTACTTCATTAACTTTACACTTGGAGATTAGTGTAAAGTGCTGTACCCAATAAACTTAGCTGAAGTTTTCTGAATATCAGTGCTCTTATGAGTTCTATTTTTTCCTCCCCCCAGGAAAAGTTGTAAGCATTTGCTGATTCTCGAGATACCGACGAACTGAGGCTGAACATGCCTTGTTGATGTGGGGTGTGAATCAAAATATTAATTCTTATGATAGGAATCAGTCCCTACCTCCATGCTTCCTTCTATGGGAGAAATTTATTGGATCCTTTGGGACTGGCGGGGGCTCAAACTGGAAGCTTCTGCCTTGACAGGGTTAACCAATTGAACTGAAGTCCAAGAGAAATACGGGATCTAGCAGTAGATCTGATTGTGAAAGACCTATTACTGGATACTTCATGGGTAGAGCCAAAGCGTGTGAACAATACAGTTTCGCAATAACATCAATTAGAATATTAACTTAAAGTATGAAGTAAAGGCTCTGTTGTATTTTAGACTTGTTGGTAATCCATGGTCAACTTCCCTTCGTAGTGCCCTACGCGAAGCTGCCTCCTTGAGTTAGAGATGTACTCTATGCCAGTTTTATAGTACTAATTCTTTTCCTTAAATTTGTATATATTTTTGCTCTGTAGTTCAAATTGTACTTATATTTGGTTGAGGGTTCATGGGTTTAAGCTACTTGCTATGGTTTTTTAACTGTGTCAGGCAGTTCCAATGAATTTACAAATGTCGGGACCGGTTCATGCGTCCATTTATTATGATTGATTGCATATGTAAACCATTATAATCTGTTGTCAGATTATACAGACAAAATTTTCCTGTTCTGATTATTAATATTAATTAGAAGAACTTAGCTGGCTCCATTCTAGTGTAGCGGTCAAGGTGGTGTAATATTTTCCGTTATTAAGAAAAGTAGCTGGCTGTCTTCCCTATTTGTCATGTGACCTATTGCTGATGTTCAAGCCGTCTTGAGGAAATTAATAATGGAAGGAAATGCCTAACCCTTCAATTTTTCTTTAACAGGCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATGGTAAAGTTATATTTCCCTTTTTAAAATTTATTACACTGTTTTTATTGGCTTGTTCATCTAACAGCTTCTGGTAACAGGTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTCGTCTTTATTT</genome_strand>
        <mrna_strand>TATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG.............................................................................GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTTGTCTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U601804" ref_strand="+" ref_description="SGN-U601804 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagaggttagagttaagttcttgacttgaaatttagcaagtatgaaaaatttggcatgccaatatatatcaagatttggagtttgttgaaagaaatgagtgagtgttagcgtctatgatagacatataataatttgaatgtctacaaaaattgcttacttatgaatattgcaaaattggtagattgggaacgttccgaaaccttgcgaaaaggaaaggaaaaatcttaaaagattcgtggcacaagctcggcatctaaggtatgttaanactttttagacttgttgaaggacgttttcctaattaaagattaanaaaatgaaaatanacnaggggtaaggggaaagatggtggtctcgtatcantggtgtgacgggcattggtacgagtaccggtgttataaaaaggaaaattactattatagaatgtggattgaaatttgagaatgccaaagcatatgggcattancttatatattattgacttgaattccttgtgtgattgtgttttatttatttcacccgtatanttgtgaaaattgangtggttatgtattatgttcatattgattgatnganatgcatcatcatcccctctattgaaataatattgtgcacatgcatanacntgagactgantataanttgggcacgtnnnatcgtccgtgctgggnatgctgana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="92052" stop="93304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92352" g_stop="93033" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U601804" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92352" e_stop="93033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTTAGAGTTAAGTTCTTGGCTTGAAATTTAGCAAGTATGAAAAATTTGGCATGCCAATATATATCAAGATTTGGAGTTTGTTGAAAAAAAATGAGTGAGTGTTAGCGTCTATGATAGACATATAATAATTTGGATGTCTACAAAAATTGCTTACTTACGAATATTGCAAAATTGGTAGATTGGGAACGTTCCGAAACCTTGCGAAAAGG-AAGGAAAAATCTTAAAAGATTCGTGGCACAAGCTCGGCATCTATGGTATGTTAAGACTTGTTAGACTTGTTGAAGGACGTTTTCCTAATTAAAGATT-A-AAAATAAAAATAGACAAAGGGGTAAGGGGAAAATATGGTGGTCTCGTATCAATGGTGTGACGGGCATTGGTACGAGTACCGGTGTTAAAAAACGGAAAATTTCTATTATAGAATGTGGATTGAAATTTGAGAATGCCAAAGCATATGGGCATTAGCTGATATATTATTGACTTGAATTCCTTGTGTGATTGTGTTTTATTTATTTCACCCGTATAGTTGAGATAATTGAGGTGGTTATGTATTATATTCATATTGATTGATTGAGATGCATCATCATCCCCTCTATTGAAACAATATTGTGCACATGCATAGAGATGAGACTGAGTATAAGTTGGGCACGTTGAGATCGTCCGTGCTGGGGATGGTGAGA</genome_strand>
        <mrna_strand>AAGAGGTTAGAGTTAAGTTCTTGACTTGAAATTTAGCAAGTATGAAAAATTTGGCATGCCAATATATATCAAGATTTGGAGTTTGTTG-AAAGAAATGAGTGAGTGTTAGCGTCTATGATAGACATATAATAATTTGAATGTCTACAAAAATTGCTTACTTATGAATATTGCAAAATTGGTAGATTGGGAACGTTCCGAAACCTTGCGAAAAGGAAAGGAAAAATCTTAAAAGATTCGTGGCACAAGCTCGGCATCTAAGGTATGTTAANACTTTTTAGACTTGTTGAAGGACGTTTTCCTAATTAAAGATTAANAAAATGAAAATANAC-NAGGGGTAAGGGG-AAAGATGGTGGTCTCGTATCANTGGTGTGACGGGCATTGGTACGAGTACCGGTGTTATAAAAAGGAAAATTACTATTATAGAATGTGGATTGAAATTTGAGAATGCCAAAGCATATGGGCATTANCTTATATATTATTGACTTGAATTCCTTGTGTGATTGTGTTTTATTTATTTCACCCGTATANTTGTGAAAATTGANGTGGTTATGTATTATGTTCATATTGATTGATNGANATGCATCATCATCCCCTCTATTGAAATAATATTGTGCACATGCATANACNTGAGACTGANTATAANTTGGGCACG-TNNNATCGTCCGTGCTGGGNATGCTGANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602202" ref_strand="+" ref_description="SGN-U602202 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="100977" stop="102113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101277" g_stop="101813" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U602202" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101277" e_stop="101813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599814" ref_strand="+" ref_description="SGN-U599814 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatctctcgagggggggcccggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="305" stop="102810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102117" g_stop="102507" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U599814" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102117" e_stop="102507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599814" ref_strand="+" ref_description="SGN-U599814 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatctctcgagggggggcccggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="124302" stop="123309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124002" g_stop="123612" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U599814" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124002" e_stop="123612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGCTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602202" ref_strand="+" ref_description="SGN-U602202 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="-" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="125142" stop="124006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124842" g_stop="124306" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="-" ref_id="SGN-U602202" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124842" e_stop="124306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588617" ref_strand="+" ref_description="SGN-U588617 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=4e-80) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=4e-12) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttcttaagcgtatttttcctcatcaagacgagtacaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130625" stop="132004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130925" g_stop="131703" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U588617" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130925" e_stop="131703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAA</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565083" ref_strand="+" ref_description="SGN-U565083 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=6e-83) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=7e-16) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>aaaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactggcaaggtccctacatggttcataaagtactttctgggaggtgttttggccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066L12-aYNRG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0066L12.1" temp_strand="+" temp_description="C07HBa0066L12.1  AC236937.1 htgs_phase:1 submitted_to_sgn_as:gi|242118055|gb|AC236937.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066L12, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="130689" stop="132071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130983" g_stop="131771" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066L12.1" gen_strand="+" ref_id="SGN-U565083" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130983" e_stop="131771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTGGAAAGGTCCTTACATGGTCCGCAAAGTACTATCT-GGAGGTGCTTTAGTCTTG</genome_strand>
        <mrna_strand>AAAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTGGCAAGGTCCCTACATGGTTCATAAAGTACTTTCTGGGAGGTGTTTTGGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="605" PGL_stop="995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="605" e_stop="995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="605" e_stop="995" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="605" stop="995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N  L  L  </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  S  * </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="607" stop="924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRGIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="605" stop="853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGEVFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="690" stop="938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRARYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6402" PGL_stop="6578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6402" e_stop="6578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="6402" e_stop="6578" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6402" stop="6578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATCGTTCACTCAGACTGACCATTG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  H  S  D  *  P  L </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  I  L  E  S  F  T  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6617" PGL_stop="7109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6617" e_stop="7109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="6617" e_stop="7109" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6617" stop="7109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGATATAGATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACAGGAATAAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCGTACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCGATTCTCTCCCATTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTATTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGTGT</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  P  N  N  F  *  D  I  D  F  G  *  L  L  C  I  V  S  H  L  D  R  N  K  M  S  R  L  S  *  P  I  N  N  H  P  N  R  V  V  L  T  H  C  L  W  K  T  N  H  E  V  H  C  D  S  L  P  F  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  F  G  N  K  I  H  N  I  T  L  H  S  I  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  D  Q  I  I  D  A  V  </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  F  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  C </second_frame>
            <third_frame>   P  I  P  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  P  H  A  T  E  Q  F  L  R  Y  R  F  W  L  T  S  L  H  C  K  S  P  *  Q  E  *  N  E  Q  T  *  L  T  Y  Q  Q  S  P  K  *  S  R  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  R  F  S  P  I  S  I  P  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  I  W  Q  *  N  P  Q  Y  H  A  S  F  Y  S  T  K  S  V  A  L  G  H  G  T  S  W  L  H  P  D  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6791" stop="7015"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNRVVLTHCLWKTNHEVHCDSLPFPFRNGHSLKCSSGPLVFILYLLTVWTFGNKIHNITLHSIPPKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="7882" PGL_stop="8694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7882" e_stop="8694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="7882" e_stop="8694" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7882" stop="8694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCCTTGTCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTGTTCTTCACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCCCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  S  V  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  H  P  C  S  S  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  P  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  P  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  V  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  L  V  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  L  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  P  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8048" stop="8386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRHYYKFVMPIPGSKSSLWHIPCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="9811" PGL_stop="8011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9811" e_stop="8935"/>
            <exon e_start="8587" e_stop="8011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.120" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="9811" e_stop="8935" e_length="877"/>
          </exon>
          <intron i_serial="1" don_prob="0.120" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8934" i_stop="8588" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="8587" e_stop="8011" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9811" stop="9057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9799" stop="8935"/>
              <exon start="8587" stop="8011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9765" stop="9210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTCAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAATACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGACCAGCATGAACTTTTCAATAAGTTCTTGAAATTGAAACCTCAAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCCTGTTTATGGAGAAGTATATCCCCCGGACTTTTTGAGGGATAGGAAAAGAGATGAATTTTTGAGCTTAGAGCAAGGTAGGATGTCTGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCAGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTATGAAGGGGTTGAGGTCAGAACTGCGGATTTTAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAATGGTTGATTTTGATGTAATTCTGG : TTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGGGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTGAAGAACAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGACAGTTGAACAAGGTAACCATAAAGAACAAGTATCCCATTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCTGGTTATCATCAATTGAAAATACGGACAAGGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGATTTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGACATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  Q  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  P  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I  L  *  P  V  Y  G  E  V  Y  P  P  D  F  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  Q  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  M  K  G  L  R  S  E  L  R  I  L  A  L  Q  V  A  A  T  A  K  S  F  Q  E  M  V  D  F  D  V  I  L   : V  K  R  V  K  S  P  T  S  R  V  V  G  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  A  C  E  E  Q  G  W  E  F  S  D  V  H  R  L  P  T  V  E  Q  G  N  H  K  E  Q  V  S  H  S  S  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  W  L  S  S  I  E  N  T  D  K  G  C  A  K  D  C  F  *  N  Q  V  W  A  L  R  I  C  S  N  V  F  W  S  Y  E  C  P  C  C  V  H  E  F  D  E  R  D  F  *  A  I  F  G  S  L  C  D  R  I  Y  *  *  H  T  D  I  L  *  K  *  G  G  T  *  G  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  I  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  N  K  F  L  K  L  K  P  Q  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  F  *  G  I  G  K  E  M  N  F  *  A  *  S  K  V  G  C  L  L  L  H  M  R  L  S  F  V  H  Y  P  S  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  *  P  Y  R  *  R  L  R  Q  N  P  F  K  K  W  L  I  L  M  *  F  W  :  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  L  V  K  N  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  I  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  T  R  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  I  Y  S  K  S  K  E  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  *  I  R  C  L  L  I  S  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  Y  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  T  S  M  N  F  S  I  S  S  *  N  *  N  L  K  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S  L  A  C  L  W  R  S  I  S  P  G  L  F  E  G  *  E  K  R  *  I  F  E  L  R  A  R  *  D  V  C  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  Y  E  G  V  E  V  R  T  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R  N  G  *  F  *  C  N  S  G :   *  E  S  *  K  P  N  F  K  S  C  W  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  T  R  M  G  V  F  G  C  A  *  T  T  D  S  *  T  R  *  P  *  R  T  S  I  P  F  L  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  L  V  I  I  N  *  K  Y  G  Q  G  M  C  Q  R  L  L  L  E  P  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  V  *  *  T  G  F  L  S  H  I  W  I  S  L  *  S  Y  L  L  M  T  Y  *  Y  T  L  K  V  R  R  N  M  R  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9810" stop="9169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPSPSDTRAVTPPPTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPIPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFNKFLKLKPQVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASFSSLFMEKYIPRTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8940" stop="8935"/>
                    <exon start="8587" stop="8012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWLRELKAQLQELLGKGFIRPSASPWGAPVLLVKNKDGSFRMCIDYRQLNKVTIKNKYPIPRIDDLFDQLQGACVFSKIDLRSGYHQLKIRTRDVPKTAFRTRYGHYEFVVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILIYSKSKEEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="10580" PGL_stop="10908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10580" e_stop="10908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="10580" e_stop="10908" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10580" stop="10908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATAAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAATCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGTTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGATTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  I  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  F  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  D   </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  I  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  I  </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  K  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  S  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  V  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="15836" PGL_stop="19153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15836" e_stop="16250"/>
            <exon e_start="16834" e_stop="16980"/>
            <exon e_start="17136" e_stop="17283"/>
            <exon e_start="18960" e_stop="19153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.977" e_score="0.998"/>
          <exon-intron don_prob="0.978" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15836" e_stop="16250" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.977">
            <gDNA_intron_boundary i_start="16251" i_stop="16833" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16834" e_stop="16980" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.883">
            <gDNA_intron_boundary i_start="16981" i_stop="17135" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17136" e_stop="17283" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17284" i_stop="18959" i_length="1676"/>
          </intron>
          <exon e_serial="4" e_score="0.959">
            <gDNA_exon_boundary e_start="18960" e_stop="19153" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15836" stop="16250"/>
              <exon start="16834" stop="16980"/>
              <exon start="17136" stop="17283"/>
              <exon start="18960" stop="19153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACTGTGCAAGTAAAATATGAGGAAACAAAAGCTCAACCACAGAAATCACAAGACTCAGAGCAACATCATTACCCAAAAGCAGCTCAAATGAAGTACGTTGGCGCTCTGGGGAAAACAATGGCGTTATCACTATCTTCACGCTCTCTCTTCACTTCCTCTTATAAATCCATTTCTCCTCTCAGTAGAAACCCCTTTTCTTCCTTCCCAATTCGTCAGTATCGTATTCTTTTTGTTCTTGATCCCTCTAACAACAACAACAACAACAAAACTAACCGGAACAAGTTGCTGAGACGTCGCACTTCTTTCTCTACCCATGCTTCCACCGCCCTACAAGAAGCTCCTGCCCCAAATGAGAAAATGGTTCTCCCAACTAACGAGTCATCAGATGGGCTACTTCGAATTCGCCATACG : TGTGCTCATGTTATGGCCATGGCAGTCCAAAAACTCTACCCGAATGCAAAAGTGACAATTGGGCCCTGGATCGATAATGGTTTTTATTATGATTTTGATATGGAGCCTTTGACTGACAGTGACCTGAAGAGGATTAAGAAGGAAATG : GATCGAATTATCAGCCGAAACTTGCCTCTTGTTAGAGAAGAAGTTAGCCGGGATGAAGCTCAAAGAAGAATAATGTCTATCAACGAACCTTACAAGATCGAAATTTTAGAGAGCATAAAGGAGGAACCAATTACCATTTATCATATTG : GTGATGAATGGTGGGATCTTTGTGCGGGACCTCATGTTGAAACTACAGGAAAGATTAACAGAAAAGCTATTGAGCTTGAATCTGTTGCTGGTGCTTACTGGAGAGGAGATGTAAAGAAACCAATGCTCCAAAGGATTTATGGCACTGCATGGGAGAATGAGGACCAATTAAAAGCATACCTTCATTTCAAAGAA</gDNA_template>
            <first_frame> L  N  C  A  S  K  I  *  G  N  K  S  S  T  T  E  I  T  R  L  R  A  T  S  L  P  K  S  S  S  N  E  V  R  W  R  S  G  E  N  N  G  V  I  T  I  F  T  L  S  L  H  F  L  L  *  I  H  F  S  S  Q  *  K  P  L  F  F  L  P  N  S  S  V  S  Y  S  F  C  S  *  S  L  *  Q  Q  Q  Q  Q  Q  N  *  P  E  Q  V  A  E  T  S  H  F  F  L  Y  P  C  F  H  R  P  T  R  S  S  C  P  K  *  E  N  G  S  P  N  *  R  V  I  R  W  A  T  S  N  S  P  Y   : V  C  S  C  Y  G  H  G  S  P  K  T  L  P  E  C  K  S  D  N  W  A  L  D  R  *  W  F  L  L  *  F  *  Y  G  A  F  D  *  Q  *  P  E  E  D  *  E  G  N   : G  S  N  Y  Q  P  K  L  A  S  C  *  R  R  S  *  P  G  *  S  S  K  K  N  N  V  Y  Q  R  T  L  Q  D  R  N  F  R  E  H  K  G  G  T  N  Y  H  L  S  Y  W :   *  *  M  V  G  S  L  C  G  T  S  C  *  N  Y  R  K  D  *  Q  K  S  Y  *  A  *  I  C  C  W  C  L  L  E  R  R  C  K  E  T  N  A  P  K  D  L  W  H  C  M  G  E  *  G  P  I  K  S  I  P  S  F  Q  R  </first_frame>
            <second_frame>  *  T  V  Q  V  K  Y  E  E  T  K  A  Q  P  Q  K  S  Q  D  S  E  Q  H  H  Y  P  K  A  A  Q  M  K  Y  V  G  A  L  G  K  T  M  A  L  S  L  S  S  R  S  L  F  T  S  S  Y  K  S  I  S  P  L  S  R  N  P  F  S  S  F  P  I  R  Q  Y  R  I  L  F  V  L  D  P  S  N  N  N  N  N  N  K  T  N  R  N  K  L  L  R  R  R  T  S  F  S  T  H  A  S  T  A  L  Q  E  A  P  A  P  N  E  K  M  V  L  P  T  N  E  S  S  D  G  L  L  R  I  R  H  T  :  C  A  H  V  M  A  M  A  V  Q  K  L  Y  P  N  A  K  V  T  I  G  P  W  I  D  N  G  F  Y  Y  D  F  D  M  E  P  L  T  D  S  D  L  K  R  I  K  K  E  M  :  D  R  I  I  S  R  N  L  P  L  V  R  E  E  V  S  R  D  E  A  Q  R  R  I  M  S  I  N  E  P  Y  K  I  E  I  L  E  S  I  K  E  E  P  I  T  I  Y  H  I   : G  D  E  W  W  D  L  C  A  G  P  H  V  E  T  T  G  K  I  N  R  K  A  I  E  L  E  S  V  A  G  A  Y  W  R  G  D  V  K  K  P  M  L  Q  R  I  Y  G  T  A  W  E  N  E  D  Q  L  K  A  Y  L  H  F  K  E </second_frame>
            <third_frame>   E  L  C  K  *  N  M  R  K  Q  K  L  N  H  R  N  H  K  T  Q  S  N  I  I  T  Q  K  Q  L  K  *  S  T  L  A  L  W  G  K  Q  W  R  Y  H  Y  L  H  A  L  S  S  L  P  L  I  N  P  F  L  L  S  V  E  T  P  F  L  P  S  Q  F  V  S  I  V  F  F  L  F  L  I  P  L  T  T  T  T  T  T  K  L  T  G  T  S  C  *  D  V  A  L  L  S  L  P  M  L  P  P  P  Y  K  K  L  L  P  Q  M  R  K  W  F  S  Q  L  T  S  H  Q  M  G  Y  F  E  F  A  I  R :   V  L  M  L  W  P  W  Q  S  K  N  S  T  R  M  Q  K  *  Q  L  G  P  G  S  I  M  V  F  I  M  I  L  I  W  S  L  *  L  T  V  T  *  R  G  L  R  R  K  W :   I  E  L  S  A  E  T  C  L  L  L  E  K  K  L  A  G  M  K  L  K  E  E  *  C  L  S  T  N  L  T  R  S  K  F  *  R  A  *  R  R  N  Q  L  P  F  I  I  L  :  V  M  N  G  G  I  F  V  R  D  L  M  L  K  L  Q  E  R  L  T  E  K  L  L  S  L  N  L  L  L  V  L  T  G  E  E  M  *  R  N  Q  C  S  K  G  F  M  A  L  H  G  R  M  R  T  N  *  K  H  T  F  I  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15840" stop="16250"/>
                    <exon start="16834" stop="16980"/>
                    <exon start="17136" stop="17283"/>
                    <exon start="18960" stop="19153"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVQVKYEETKAQPQKSQDSEQHHYPKAAQMKYVGALGKTMALSLSSRSLFTSSYKSISPLSRNPFSSFPIRQYRILFVLDPSNNNNNNKTNRNKLLRRRTSFSTHASTALQEAPAPNEKMVLPTNESSDGLLRIRHTCAHVMAMAVQKLYPNAKVTIGPWIDNGFYYDFDMEPLTDSDLKRIKKEMDRIISRNLPLVREEVSRDEAQRRIMSINEPYKIEILESIKEEPITIYHIGDEWWDLCAGPHVETTGKINRKAIELESVAGAYWRGDVKKPMLQRIYGTAWENEDQLKAYLHFKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="23077" PGL_stop="22942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23077" e_stop="22942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="23077" e_stop="22942" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23077" stop="22942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCTTCATAAGGTGAAAATCACAAAATAATAGATTGAATTCATGTATTCCTTTATTTTCCTCTCTATTTGCTCTGTGGTTCACAACTATGTTCAAAATCATACATGAATGACTGACCTAATACAATAAATCATTC</gDNA_template>
            <first_frame> V  L  H  K  V  K  I  T  K  *  *  I  E  F  M  Y  S  F  I  F  L  S  I  C  S  V  V  H  N  Y  V  Q  N  H  T  *  M  T  D  L  I  Q  *  I  I  </first_frame>
            <second_frame>  S  F  I  R  *  K  S  Q  N  N  R  L  N  S  C  I  P  L  F  S  S  L  F  A  L  W  F  T  T  M  F  K  I  I  H  E  *  L  T  *  Y  N  K  S  F </second_frame>
            <third_frame>   P  S  *  G  E  N  H  K  I  I  D  *  I  H  V  F  L  Y  F  P  L  Y  L  L  C  G  S  Q  L  C  S  K  S  Y  M  N  D  *  P  N  T  I  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="26741" PGL_stop="25042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26741" e_stop="26641"/>
            <exon e_start="25964" e_stop="25042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26741" e_stop="26641" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26640" i_stop="25965" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="25964" e_stop="25042" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26741" stop="26641"/>
              <exon start="25964" stop="25042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACACATTCTTTTTCTCTTTAAATACTCTCTTTGTATACTAAACTCCATACCCTTTTGCTCTCAAGCCTTTCCTCTCTCTCTCAGCTTCTCTGTTTCAAG : GGGTCAGTGAGTGTGAAAATGGGCTACTCCAGGGTTCTTATTGTTAGTAGTCTACTTCTAGTGTTTCAATTATCAACTGTAGTGGCGAAAGGCAAAGCGATTGGATCTCCAATCATGGCACCAGCACCAGCACCAGGTCCTGAATACACAAACCTAACGGACTTACTCTCCGTTGCAGGGCCTTTTCATACATTCCTTAACTACCTTGTATCGACTAAAGTCATCGAGACTTTCCAAGCCCAAGCTAACAATACAGAAGAAGGGATCACACTTTTTGTTCCTAAAGACTCAGCCTTTACCTCACTGAAAAAGCCCTCACTTTCCAATCTTACCTCAGAACAACTTAAGTCCCTTTGCCTTTTCCACGCATTGCCACATTACTATAGTCTAGCTGATTTCAAGAACCTTAGTGATGTTAGCCCTATTAATACCTTGGCTGGAGGGAACTTATACTCTTTGAACTTCACCGATGACTCTGGGACCGTTCATCTTAACTCAGGATGGTCTAGGACTAAAGTTAGCAGCGCTGTTCGCACCACTTATCCAGTTGCTGTTTATCAGGTGGACAAGGTACTTCTTCCTGAAGCCATATTCGGGACGGATTTACCACCAATGCCAGCTCCAGCACCAGCACCAGTAACGGATATCGCCCCTACTGCTGATAGTCCAGCTGCTGATCAAACAGGCAAAGCTAGAGCACCAGCATCGCCTGATTCATCGTCACCATCAGCTTCTCACAAGATGATGAGCTGGGGCATTTTGAAACATTTGGTTTTGGCAATTGGTGGTGGATTCTTGATGTTTTTCTTGTAATGAAAAATGATGTCTTATTCTGTTAAATTAATGTTGAACATCATGGTACATCTGTTTTTTCTTATTGGTTTTGATATACTCCACACATTGGGGATTTAGTATTGGTTACT</gDNA_template>
            <first_frame> L  H  I  L  F  L  F  K  Y  S  L  C  I  L  N  S  I  P  F  C  S  Q  A  F  P  L  S  L  S  F  S  V  S  R :   G  Q  *  V  *  K  W  A  T  P  G  F  L  L  L  V  V  Y  F  *  C  F  N  Y  Q  L  *  W  R  K  A  K  R  L  D  L  Q  S  W  H  Q  H  Q  H  Q  V  L  N  T  Q  T  *  R  T  Y  S  P  L  Q  G  L  F  I  H  S  L  T  T  L  Y  R  L  K  S  S  R  L  S  K  P  K  L  T  I  Q  K  K  G  S  H  F  L  F  L  K  T  Q  P  L  P  H  *  K  S  P  H  F  P  I  L  P  Q  N  N  L  S  P  F  A  F  S  T  H  C  H  I  T  I  V  *  L  I  S  R  T  L  V  M  L  A  L  L  I  P  W  L  E  G  T  Y  T  L  *  T  S  P  M  T  L  G  P  F  I  L  T  Q  D  G  L  G  L  K  L  A  A  L  F  A  P  L  I  Q  L  L  F  I  R  W  T  R  Y  F  F  L  K  P  Y  S  G  R  I  Y  H  Q  C  Q  L  Q  H  Q  H  Q  *  R  I  S  P  L  L  L  I  V  Q  L  L  I  K  Q  A  K  L  E  H  Q  H  R  L  I  H  R  H  H  Q  L  L  T  R  *  *  A  G  A  F  *  N  I  W  F  W  Q  L  V  V  D  S  *  C  F  S  C  N  E  K  *  C  L  I  L  L  N  *  C  *  T  S  W  Y  I  C  F  F  L  L  V  L  I  Y  S  T  H  W  G  F  S  I  G  Y  </first_frame>
            <second_frame>  Y  T  F  F  F  S  L  N  T  L  F  V  Y  *  T  P  Y  P  F  A  L  K  P  F  L  S  L  S  A  S  L  F  Q   : G  V  S  E  C  E  N  G  L  L  Q  G  S  Y  C  *  *  S  T  S  S  V  S  I  I  N  C  S  G  E  R  Q  S  D  W  I  S  N  H  G  T  S  T  S  T  R  S  *  I  H  K  P  N  G  L  T  L  R  C  R  A  F  S  Y  I  P  *  L  P  C  I  D  *  S  H  R  D  F  P  S  P  S  *  Q  Y  R  R  R  D  H  T  F  C  S  *  R  L  S  L  Y  L  T  E  K  A  L  T  F  Q  S  Y  L  R  T  T  *  V  P  L  P  F  P  R  I  A  T  L  L  *  S  S  *  F  Q  E  P  *  *  C  *  P  Y  *  Y  L  G  W  R  E  L  I  L  F  E  L  H  R  *  L  W  D  R  S  S  *  L  R  M  V  *  D  *  S  *  Q  R  C  S  H  H  L  S  S  C  C  L  S  G  G  Q  G  T  S  S  *  S  H  I  R  D  G  F  T  T  N  A  S  S  S  T  S  T  S  N  G  Y  R  P  Y  C  *  *  S  S  C  *  S  N  R  Q  S  *  S  T  S  I  A  *  F  I  V  T  I  S  F  S  Q  D  D  E  L  G  H  F  E  T  F  G  F  G  N  W  W  W  I  L  D  V  F  L  V  M  K  N  D  V  L  F  C  *  I  N  V  E  H  H  G  T  S  V  F  S  Y  W  F  *  Y  T  P  H  I  G  D  L  V  L  V  T </second_frame>
            <third_frame>   T  H  S  F  S  L  *  I  L  S  L  Y  T  K  L  H  T  L  L  L  S  S  L  S  S  L  S  Q  L  L  C  F  K  :  G  S  V  S  V  K  M  G  Y  S  R  V  L  I  V  S  S  L  L  L  V  F  Q  L  S  T  V  V  A  K  G  K  A  I  G  S  P  I  M  A  P  A  P  A  P  G  P  E  Y  T  N  L  T  D  L  L  S  V  A  G  P  F  H  T  F  L  N  Y  L  V  S  T  K  V  I  E  T  F  Q  A  Q  A  N  N  T  E  E  G  I  T  L  F  V  P  K  D  S  A  F  T  S  L  K  K  P  S  L  S  N  L  T  S  E  Q  L  K  S  L  C  L  F  H  A  L  P  H  Y  Y  S  L  A  D  F  K  N  L  S  D  V  S  P  I  N  T  L  A  G  G  N  L  Y  S  L  N  F  T  D  D  S  G  T  V  H  L  N  S  G  W  S  R  T  K  V  S  S  A  V  R  T  T  Y  P  V  A  V  Y  Q  V  D  K  V  L  L  P  E  A  I  F  G  T  D  L  P  P  M  P  A  P  A  P  A  P  V  T  D  I  A  P  T  A  D  S  P  A  A  D  Q  T  G  K  A  R  A  P  A  S  P  D  S  S  S  P  S  A  S  H  K  M  M  S  W  G  I  L  K  H  L  V  L  A  I  G  G  G  F  L  M  F  F  L  *  *  K  M  M  S  Y  S  V  K  L  M  L  N  I  M  V  H  L  F  F  L  I  G  F  D  I  L  H  T  L  G  I  *  Y  W  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26718" stop="26641"/>
                    <exon start="25964" stop="25152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSLYTKLHTLLLSSLSSLSQLLCFKGSVSVKMGYSRVLIVSSLLLVFQLSTVVAKGKAIGSPIMAPAPAPGPEYTNLTDLLSVAGPFHTFLNYLVSTKVIETFQAQANNTEEGITLFVPKDSAFTSLKKPSLSNLTSEQLKSLCLFHALPHYYSLADFKNLSDVSPINTLAGGNLYSLNFTDDSGTVHLNSGWSRTKVSSAVRTTYPVAVYQVDKVLLPEAIFGTDLPPMPAPAPAPVTDIAPTADSPAADQTGKARAPASPDSSSPSASHKMMSWGILKHLVLAIGGGFLMFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62362" PGL_stop="69463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62362" e_stop="62692"/>
            <exon e_start="67743" e_stop="69041"/>
            <exon e_start="69119" e_stop="69463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62362" e_stop="62692" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62693" i_stop="67742" i_length="5050"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67743" e_stop="69041" e_length="1299"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69042" i_stop="69118" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="69119" e_stop="69463" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62362" stop="62692"/>
              <exon start="67743" stop="69041"/>
              <exon start="69119" stop="69463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATATATATATATATATATATATATACATGTATAATCCAACCTTGGACAGATCATTCGTTCAATATATCTGAAATACGTAATCCATCGCATTGCAATAGAAGAGGAGAAAAGAGAATTTGTTTGGAAGTTTTGTAGAGCGAGAAGAATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGCAAGAGCAGAGGGAGAGGAAACTCAAGGCTAAATTGAAATTGGACAGAGAGAAGAAAGCAAAACAAGAAGCTATTCGTCAACGTGAAGCAATTGAAGCTGTTCAGCGTGCTCGCCGACTTGATGCTGCTGAAGCCCAAGCTAAG : GCAACCCAGCAAATTGAAGAAGAACTGCTAGCTGGACGAGGAGTTGCATTCTCTCGTGTTTTGGAAGCTGTACCCTATGAGGGTGCTGGAGATAAAATTAAATTGCCACCATCTTGCTTCACTGAATTGTCTGATCAGGGTGCCTTTGACAAGGGACCTCTACACTTCAGGTTGTCTGTCGTTCACCAATCCTCTCTTTCGGACTTGAAGGATGCAGAGCAGAATAAGCGGACAACGCATGCTGGAGTCCTGGAGTTCACTGCAGATGATGGTGTTGTAGGGCTTCCTTCCCATATATGGAGTAACTTATATCCTGCAGTCTCGCCAATGGTTCCCATGGTTGAGGTGTGTTATGTCTGGCTCCAAAAAGGAACTTATGCAAAACTTCAGCCAGTTGAAGCAGGATTTTCTGATATCCCTAATCACAAGGCAGTTCTTGAAACAAGTCTTCGTCAGCATGCGACGCTTTCAGAAGGCGATGTACTTACTGTTAATCATGGTGTTCTGACATATCATTTACGTGTTCTTGAACTAAAACCTTCTTCGAGTGTGTCTGTTCTAGAAACAGATATAGAGGTTGATGTAATCGGTGCTGATCCAACTGCTGAGAGCACAAGTCAGCCTGTATTGCAACCTCTCGAATTGGGCAAGTTAGATTCTGGGGTGGTTGCAGAAGGAAGCTATGTATATTACAAGTTCCAAATAGGCGATGATGTCTGGGGAAAAATATCTTCAGGAGATGCAGAAGTTGAGGTAAAAATAGAATCAGAGAACCAAGATGGGGATACTGACCTCTATGTTTCCCGACACCCATTACTATTTCCTACACAGCACCAGCATGGTTGGTCATCTCATGACATCGGTTCAAAAGCTTTGGTCCTTAACTCCAGGGATCTCGGCCTTGGACCTGGTACTTACAGTATTGGCATCTATGGTTTCAAGGGCACAACCAAGTACAAGGTGTCAGTTAGCATACGAGACAAATCTAATTTAAAGATTGGACAGCAAGCCGTATCTTCCACATTGTCTGCTGATGGAGATACAGTAGAATGCCAAAACTGTAAACATTACATACCTTCCAGGAGTATAGCACTACATGAAGCTTACTGCAGGAGGCACAATATCATCTGTCAGCATACCGGTTGTGGGGTTGTTCTAAGGAGGGATGAGGTCGAGAACCATGTCCATTGTGAAGAATGTGGGCTAGCATTTCAGAAAGAGGAAATTGAGAAGCACAAGAAAGTATTTCACGTCCCACTGAATTGCCCTTGTGGAATAGTCCTTGAAAAAGAAAAGATG : GTTCAACATCAATCTGTGGAGTGTCCCTTGAGACTTGTAACATGCCGGTTTTGTGGAGACATGGTCCAAGCAGGGACTTCAGCAGCAGATGTGAGGGATCGCTTAAGAGGACTTACACAGCACGAGAGTGTTTGTGGATCAAGAACCGCCCCTTGTGATTCATGTGGGCGTTCAGTTATGTTGAAGGATATGGACATACACCAAGTTGCAGTCCACCAGAAAAATTGATCATGAGTAAATCTTTTATTTCTTCTCTGGTGACTTTGGATATAAAATGCTGGTTGAACTGTAAAAACCGACTGTTGATTCATGTATTCATGCAGTTGTATATTTTCGTCTTTATTT</gDNA_template>
            <first_frame> Y  I  Y  I  Y  I  Y  I  Y  T  C  I  I  Q  P  W  T  D  H  S  F  N  I  S  E  I  R  N  P  S  H  C  N  R  R  G  E  K  R  I  C  L  E  V  L  *  S  E  K  N  G  F  *  T  E  K  S  E  R  E  A  R  A  R  A  E  G  E  E  T  Q  G  *  I  E  I  G  Q  R  E  E  S  K  T  R  S  Y  S  S  T  *  S  N  *  S  C  S  A  C  S  P  T  *  C  C  *  S  P  S  *   : G  N  P  A  N  *  R  R  T  A  S  W  T  R  S  C  I  L  S  C  F  G  S  C  T  L  *  G  C  W  R  *  N  *  I  A  T  I  L  L  H  *  I  V  *  S  G  C  L  *  Q  G  T  S  T  L  Q  V  V  C  R  S  P  I  L  S  F  G  L  E  G  C  R  A  E  *  A  D  N  A  C  W  S  P  G  V  H  C  R  *  W  C  C  R  A  S  F  P  Y  M  E  *  L  I  S  C  S  L  A  N  G  S  H  G  *  G  V  L  C  L  A  P  K  R  N  L  C  K  T  S  A  S  *  S  R  I  F  *  Y  P  *  S  Q  G  S  S  *  N  K  S  S  S  A  C  D  A  F  R  R  R  C  T  Y  C  *  S  W  C  S  D  I  S  F  T  C  S  *  T  K  T  F  F  E  C  V  C  S  R  N  R  Y  R  G  *  C  N  R  C  *  S  N  C  *  E  H  K  S  A  C  I  A  T  S  R  I  G  Q  V  R  F  W  G  G  C  R  R  K  L  C  I  L  Q  V  P  N  R  R  *  C  L  G  K  N  I  F  R  R  C  R  S  *  G  K  N  R  I  R  E  P  R  W  G  Y  *  P  L  C  F  P  T  P  I  T  I  S  Y  T  A  P  A  W  L  V  I  S  *  H  R  F  K  S  F  G  P  *  L  Q  G  S  R  P  W  T  W  Y  L  Q  Y  W  H  L  W  F  Q  G  H  N  Q  V  Q  G  V  S  *  H  T  R  Q  I  *  F  K  D  W  T  A  S  R  I  F  H  I  V  C  *  W  R  Y  S  R  M  P  K  L  *  T  L  H  T  F  Q  E  Y  S  T  T  *  S  L  L  Q  E  A  Q  Y  H  L  S  A  Y  R  L  W  G  C  S  K  E  G  *  G  R  E  P  C  P  L  *  R  M  W  A  S  I  S  E  R  G  N  *  E  A  Q  E  S  I  S  R  P  T  E  L  P  L  W  N  S  P  *  K  R  K  D   : G  S  T  S  I  C  G  V  S  L  E  T  C  N  M  P  V  L  W  R  H  G  P  S  R  D  F  S  S  R  C  E  G  S  L  K  R  T  Y  T  A  R  E  C  L  W  I  K  N  R  P  L  *  F  M  W  A  F  S  Y  V  E  G  Y  G  H  T  P  S  C  S  P  P  E  K  L  I  M  S  K  S  F  I  S  S  L  V  T  L  D  I  K  C  W  L  N  C  K  N  R  L  L  I  H  V  F  M  Q  L  Y  I  F  V  F  I  </first_frame>
            <second_frame>  I  Y  I  Y  I  Y  I  Y  I  H  V  *  S  N  L  G  Q  I  I  R  S  I  Y  L  K  Y  V  I  H  R  I  A  I  E  E  E  K  R  E  F  V  W  K  F  C  R  A  R  R  M  D  F  E  L  R  R  A  R  E  K  L  E  Q  E  Q  R  E  R  K  L  K  A  K  L  K  L  D  R  E  K  K  A  K  Q  E  A  I  R  Q  R  E  A  I  E  A  V  Q  R  A  R  R  L  D  A  A  E  A  Q  A  K  :  A  T  Q  Q  I  E  E  E  L  L  A  G  R  G  V  A  F  S  R  V  L  E  A  V  P  Y  E  G  A  G  D  K  I  K  L  P  P  S  C  F  T  E  L  S  D  Q  G  A  F  D  K  G  P  L  H  F  R  L  S  V  V  H  Q  S  S  L  S  D  L  K  D  A  E  Q  N  K  R  T  T  H  A  G  V  L  E  F  T  A  D  D  G  V  V  G  L  P  S  H  I  W  S  N  L  Y  P  A  V  S  P  M  V  P  M  V  E  V  C  Y  V  W  L  Q  K  G  T  Y  A  K  L  Q  P  V  E  A  G  F  S  D  I  P  N  H  K  A  V  L  E  T  S  L  R  Q  H  A  T  L  S  E  G  D  V  L  T  V  N  H  G  V  L  T  Y  H  L  R  V  L  E  L  K  P  S  S  S  V  S  V  L  E  T  D  I  E  V  D  V  I  G  A  D  P  T  A  E  S  T  S  Q  P  V  L  Q  P  L  E  L  G  K  L  D  S  G  V  V  A  E  G  S  Y  V  Y  Y  K  F  Q  I  G  D  D  V  W  G  K  I  S  S  G  D  A  E  V  E  V  K  I  E  S  E  N  Q  D  G  D  T  D  L  Y  V  S  R  H  P  L  L  F  P  T  Q  H  Q  H  G  W  S  S  H  D  I  G  S  K  A  L  V  L  N  S  R  D  L  G  L  G  P  G  T  Y  S  I  G  I  Y  G  F  K  G  T  T  K  Y  K  V  S  V  S  I  R  D  K  S  N  L  K  I  G  Q  Q  A  V  S  S  T  L  S  A  D  G  D  T  V  E  C  Q  N  C  K  H  Y  I  P  S  R  S  I  A  L  H  E  A  Y  C  R  R  H  N  I  I  C  Q  H  T  G  C  G  V  V  L  R  R  D  E  V  E  N  H  V  H  C  E  E  C  G  L  A  F  Q  K  E  E  I  E  K  H  K  K  V  F  H  V  P  L  N  C  P  C  G  I  V  L  E  K  E  K  M  :  V  Q  H  Q  S  V  E  C  P  L  R  L  V  T  C  R  F  C  G  D  M  V  Q  A  G  T  S  A  A  D  V  R  D  R  L  R  G  L  T  Q  H  E  S  V  C  G  S  R  T  A  P  C  D  S  C  G  R  S  V  M  L  K  D  M  D  I  H  Q  V  A  V  H  Q  K  N  *  S  *  V  N  L  L  F  L  L  W  *  L  W  I  *  N  A  G  *  T  V  K  T  D  C  *  F  M  Y  S  C  S  C  I  F  S  S  L  F </second_frame>
            <third_frame>   Y  I  Y  I  Y  I  Y  I  Y  M  Y  N  P  T  L  D  R  S  F  V  Q  Y  I  *  N  T  *  S  I  A  L  Q  *  K  R  R  K  E  N  L  F  G  S  F  V  E  R  E  E  W  I  L  N  *  E  E  R  E  R  S  *  S  K  S  R  G  R  G  N  S  R  L  N  *  N  W  T  E  R  R  K  Q  N  K  K  L  F  V  N  V  K  Q  L  K  L  F  S  V  L  A  D  L  M  L  L  K  P  K  L  R :   Q  P  S  K  L  K  K  N  C  *  L  D  E  E  L  H  S  L  V  F  W  K  L  Y  P  M  R  V  L  E  I  K  L  N  C  H  H  L  A  S  L  N  C  L  I  R  V  P  L  T  R  D  L  Y  T  S  G  C  L  S  F  T  N  P  L  F  R  T  *  R  M  Q  S  R  I  S  G  Q  R  M  L  E  S  W  S  S  L  Q  M  M  V  L  *  G  F  L  P  I  Y  G  V  T  Y  I  L  Q  S  R  Q  W  F  P  W  L  R  C  V  M  S  G  S  K  K  E  L  M  Q  N  F  S  Q  L  K  Q  D  F  L  I  S  L  I  T  R  Q  F  L  K  Q  V  F  V  S  M  R  R  F  Q  K  A  M  Y  L  L  L  I  M  V  F  *  H  I  I  Y  V  F  L  N  *  N  L  L  R  V  C  L  F  *  K  Q  I  *  R  L  M  *  S  V  L  I  Q  L  L  R  A  Q  V  S  L  Y  C  N  L  S  N  W  A  S  *  I  L  G  W  L  Q  K  E  A  M  Y  I  T  S  S  K  *  A  M  M  S  G  E  K  Y  L  Q  E  M  Q  K  L  R  *  K  *  N  Q  R  T  K  M  G  I  L  T  S  M  F  P  D  T  H  Y  Y  F  L  H  S  T  S  M  V  G  H  L  M  T  S  V  Q  K  L  W  S  L  T  P  G  I  S  A  L  D  L  V  L  T  V  L  A  S  M  V  S  R  A  Q  P  S  T  R  C  Q  L  A  Y  E  T  N  L  I  *  R  L  D  S  K  P  Y  L  P  H  C  L  L  M  E  I  Q  *  N  A  K  T  V  N  I  T  Y  L  P  G  V  *  H  Y  M  K  L  T  A  G  G  T  I  S  S  V  S  I  P  V  V  G  L  F  *  G  G  M  R  S  R  T  M  S  I  V  K  N  V  G  *  H  F  R  K  R  K  L  R  S  T  R  K  Y  F  T  S  H  *  I  A  L  V  E  *  S  L  K  K  K  R  W :   F  N  I  N  L  W  S  V  P  *  D  L  *  H  A  G  F  V  E  T  W  S  K  Q  G  L  Q  Q  Q  M  *  G  I  A  *  E  D  L  H  S  T  R  V  F  V  D  Q  E  P  P  L  V  I  H  V  G  V  Q  L  C  *  R  I  W  T  Y  T  K  L  Q  S  T  R  K  I  D  H  E  *  I  F  Y  F  F  S  G  D  F  G  Y  K  M  L  V  E  L  *  K  P  T  V  D  S  C  I  H  A  V  V  Y  F  R  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62399" stop="62692"/>
                    <exon start="67743" stop="69041"/>
                    <exon start="69119" stop="69346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1818</number_coding_nucleotides>
                  <number_encoded_amino_acids>606</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLGQIIRSIYLKYVIHRIAIEEEKREFVWKFCRARRMDFELRRAREKLEQEQRERKLKAKLKLDREKKAKQEAIRQREAIEAVQRARRLDAAEAQAKATQQIEEELLAGRGVAFSRVLEAVPYEGAGDKIKLPPSCFTELSDQGAFDKGPLHFRLSVVHQSSLSDLKDAEQNKRTTHAGVLEFTADDGVVGLPSHIWSNLYPAVSPMVPMVEVCYVWLQKGTYAKLQPVEAGFSDIPNHKAVLETSLRQHATLSEGDVLTVNHGVLTYHLRVLELKPSSSVSVLETDIEVDVIGADPTAESTSQPVLQPLELGKLDSGVVAEGSYVYYKFQIGDDVWGKISSGDAEVEVKIESENQDGDTDLYVSRHPLLFPTQHQHGWSSHDIGSKALVLNSRDLGLGPGTYSIGIYGFKGTTKYKVSVSIRDKSNLKIGQQAVSSTLSADGDTVECQNCKHYIPSRSIALHEAYCRRHNIICQHTGCGVVLRRDEVENHVHCEECGLAFQKEEIEKHKKVFHVPLNCPCGIVLEKEKMVQHQSVECPLRLVTCRFCGDMVQAGTSAADVRDRLRGLTQHESVCGSRTAPCDSCGRSVMLKDMDIHQVAVHQKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="92352" PGL_stop="93033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92352" e_stop="93033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="92352" e_stop="93033" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92352" stop="93033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGGTTAGAGTTAAGTTCTTGGCTTGAAATTTAGCAAGTATGAAAAATTTGGCATGCCAATATATATCAAGATTTGGAGTTTGTTGAAAAAAAATGAGTGAGTGTTAGCGTCTATGATAGACATATAATAATTTGGATGTCTACAAAAATTGCTTACTTACGAATATTGCAAAATTGGTAGATTGGGAACGTTCCGAAACCTTGCGAAAAGGAAGGAAAAATCTTAAAAGATTCGTGGCACAAGCTCGGCATCTATGGTATGTTAAGACTTGTTAGACTTGTTGAAGGACGTTTTCCTAATTAAAGATTAAAAATAAAAATAGACAAAGGGGTAAGGGGAAAATATGGTGGTCTCGTATCAATGGTGTGACGGGCATTGGTACGAGTACCGGTGTTAAAAAACGGAAAATTTCTATTATAGAATGTGGATTGAAATTTGAGAATGCCAAAGCATATGGGCATTAGCTGATATATTATTGACTTGAATTCCTTGTGTGATTGTGTTTTATTTATTTCACCCGTATAGTTGAGATAATTGAGGTGGTTATGTATTATATTCATATTGATTGATTGAGATGCATCATCATCCCCTCTATTGAAACAATATTGTGCACATGCATAGAGATGAGACTGAGTATAAGTTGGGCACGTTGAGATCGTCCGTGCTGGGGATGGTGAGA</gDNA_template>
            <first_frame> K  R  L  E  L  S  S  W  L  E  I  *  Q  V  *  K  I  W  H  A  N  I  Y  Q  D  L  E  F  V  E  K  K  *  V  S  V  S  V  Y  D  R  H  I  I  I  W  M  S  T  K  I  A  Y  L  R  I  L  Q  N  W  *  I  G  N  V  P  K  P  C  E  K  E  G  K  I  L  K  D  S  W  H  K  L  G  I  Y  G  M  L  R  L  V  R  L  V  E  G  R  F  P  N  *  R  L  K  I  K  I  D  K  G  V  R  G  K  Y  G  G  L  V  S  M  V  *  R  A  L  V  R  V  P  V  L  K  N  G  K  F  L  L  *  N  V  D  *  N  L  R  M  P  K  H  M  G  I  S  *  Y  I  I  D  L  N  S  L  C  D  C  V  L  F  I  S  P  V  *  L  R  *  L  R  W  L  C  I  I  F  I  L  I  D  *  D  A  S  S  S  P  L  L  K  Q  Y  C  A  H  A  *  R  *  D  *  V  *  V  G  H  V  E  I  V  R  A  G  D  G  E  </first_frame>
            <second_frame>  R  G  *  S  *  V  L  G  L  K  F  S  K  Y  E  K  F  G  M  P  I  Y  I  K  I  W  S  L  L  K  K  N  E  *  V  L  A  S  M  I  D  I  *  *  F  G  C  L  Q  K  L  L  T  Y  E  Y  C  K  I  G  R  L  G  T  F  R  N  L  A  K  R  K  E  K  S  *  K  I  R  G  T  S  S  A  S  M  V  C  *  D  L  L  D  L  L  K  D  V  F  L  I  K  D  *  K  *  K  *  T  K  G  *  G  E  N  M  V  V  S  Y  Q  W  C  D  G  H  W  Y  E  Y  R  C  *  K  T  E  N  F  Y  Y  R  M  W  I  E  I  *  E  C  Q  S  I  W  A  L  A  D  I  L  L  T  *  I  P  C  V  I  V  F  Y  L  F  H  P  Y  S  *  D  N  *  G  G  Y  V  L  Y  S  Y  *  L  I  E  M  H  H  H  P  L  Y  *  N  N  I  V  H  M  H  R  D  E  T  E  Y  K  L  G  T  L  R  S  S  V  L  G  M  V  R </second_frame>
            <third_frame>   E  V  R  V  K  F  L  A  *  N  L  A  S  M  K  N  L  A  C  Q  Y  I  S  R  F  G  V  C  *  K  K  M  S  E  C  *  R  L  *  *  T  Y  N  N  L  D  V  Y  K  N  C  L  L  T  N  I  A  K  L  V  D  W  E  R  S  E  T  L  R  K  G  R  K  N  L  K  R  F  V  A  Q  A  R  H  L  W  Y  V  K  T  C  *  T  C  *  R  T  F  S  *  L  K  I  K  N  K  N  R  Q  R  G  K  G  K  I  W  W  S  R  I  N  G  V  T  G  I  G  T  S  T  G  V  K  K  R  K  I  S  I  I  E  C  G  L  K  F  E  N  A  K  A  Y  G  H  *  L  I  Y  Y  *  L  E  F  L  V  *  L  C  F  I  Y  F  T  R  I  V  E  I  I  E  V  V  M  Y  Y  I  H  I  D  *  L  R  C  I  I  I  P  S  I  E  T  I  L  C  T  C  I  E  M  R  L  S  I  S  W  A  R  *  D  R  P  C  W  G  W  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066L12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="101277" PGL_stop="101813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101277" e_stop="101813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="101277" e_stop="101813" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101277" stop="101813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> E  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </first_frame>
            <second_frame>  K  A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  V  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  S  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </second_frame>
            <third_frame>   R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  Y  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  R  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101312" stop="101530"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLYDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="102117" PGL_stop="102507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102117" e_stop="102507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="102117" e_stop="102507" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102117" stop="102507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N  L  L  </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  S  * </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102119" stop="102436"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRGIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102117" stop="102365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGEVFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102202" stop="102450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRARYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="124002" PGL_stop="123612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124002" e_stop="123612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="124002" e_stop="123612" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124002" stop="123612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTATTCTTCATCATCCTCCTCAATCACTTCACGGCTGGGGCTACTGTTATCTGCTTCCTGATCACGGGCGAGCTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCATTTCTGGCCAACGCTACGGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGATGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACCTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTTGA</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  L  F  F  I  I  L  L  N  H  F  T  A  G  A  T  V  I  C  F  L  I  T  G  E  L  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  I  S  G  Q  R  Y  G  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  C  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  H  V  Y  L  E  S  F  L  L  N  P  L  N  L  L  </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  Y  S  S  S  S  S  S  I  T  S  R  L  G  L  L  L  S  A  S  *  S  R  A  S  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  A  N  A  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  S  * </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  I  L  H  H  P  P  Q  S  L  H  G  W  G  Y  C  Y  L  L  P  D  H  G  R  A  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  H  F  W  P  T  L  R  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  M  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  P  *  V  L  P  P  *  P  S  E  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124000" stop="123683"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFILHHPPQSLHGWGYCYLLPDHGRAIFRPLGRYGSPIPRRAPHFWPTLRQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVMPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124002" stop="123754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYLFFIILLNHFTAGATVICFLITGELFSALWVAMGRQFLVERRISGQRYGSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123917" stop="123669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRASYFPPFGSLWVANSSSSAAFLANATAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="124842" PGL_stop="124306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124842" e_stop="124306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="124842" e_stop="124306" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124842" stop="124306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGTATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTCGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> E  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </first_frame>
            <second_frame>  K  A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  V  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  S  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </second_frame>
            <third_frame>   R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  Y  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  R  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124807" stop="124589"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLYDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="130925" PGL_stop="131771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130925" e_stop="131771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="130925" e_stop="131771" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130925" stop="131703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130983" stop="131771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTTAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAAGTCAACTTTTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTGGAAAGGTCCTTACATGGTCCGCAAAGTACTATCTGGAGGTGCTTTAGTCTTG</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  A  L  A  I  C  S  L  G  N  G  C  H  R  P  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  L  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  *  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  N  F  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L  E  R  S  L  H  G  P  Q  S  T  I  W  R  C  F  S  L  </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  K  S  T  F  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N  W  K  G  P  Y  M  V  R  K  V  L  S  G  G  A  L  V  L </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  R  L  G  H  L  *  L  G  E  W  M  S  S  A  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  L  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  S  Q  L  F  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  G  K  V  L  T  W  S  A  K  Y  Y  L  E  V  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066L12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130926" stop="131771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRKSTFYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPNWKGPYMVRKVLSGGALVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 101 chains have been computed
$ 
$ memory statistics:
$ 242728 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 12775 bytes was the average size of a spliced alignment
$ 23392 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1462 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 124 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:11:47
-->
