<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:21:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203964" ref_strand="+" ref_description="SGN-E203964 [cLEC-22-C18]">
      <seq>ccggcaccattttccgaaatcgggaggcgggcaagagatctactgaccaaagattacagttatgatcagaagttcaccttctctattccgagctccagtgggatgggaataacagctactggtgtgaagaaagatcaaatttttattggtgatataagtactcaatataagcttggaagtacagttgttgatatcaaagttgatacctattccaatgtctcaacaaaagttacactggttgatgttttccgatccacgaaactgtccttaggcttcaacatacctgatcacaagtctggcaagctcgatgttcagtaccttcatcagcatgctgctatcaattccagtattggcttaaatccctcccctctcttggagctctcggttgctattggcaacaaggatttagcccttggtggagaaataggatttaatactgcttcatcttcttttacgaagtgcaatgctgggcttagttttaacaaaccggatttttctgctgcacttatgttaacggataggggacaagctgtgaaggcatcatatgtacacttggtagatccaacaaatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="29" stop="7306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="336" g_stop="403" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="404" i_stop="1933" i_length="1530">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1934" g_stop="2044" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="216" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2045" i_stop="2196" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2197" g_stop="2283" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2284" i_stop="3335" i_length="1052">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3336" g_stop="3544" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="512" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3545" i_stop="6942" i_length="3398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6943" g_stop="7006" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="576" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E203964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="336" e_stop="403"/>
          <exon e_start="1934" e_stop="2044"/>
          <exon e_start="2197" e_stop="2283"/>
          <exon e_start="3336" e_stop="3544"/>
          <exon e_start="6943" e_stop="7006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACTGACCAAAGATTACAGTTATGATCAGAAGTTCACCTTCTCTATTCCGAGCTCCAGTGGGATGGTACTAGCTTATTCTCTCATTTACTGTTACTCTTTTAGATTATTTAAGCTGTTGAATCTTCTATTTGGGCTTCAGAAGGCTGCCAAAATTTTCCACCTGCACACGTTATTGTGAATTATTTATTATCTTGATATTGGAAATATGTACTTTAAGTTGCTAAATCATTTGATTCATTCTGAAATATATTATTATGTGTCTTCAAGTCTGATATCTGTCCTTCGTACTAGATTTTTTAAAATTTTTTTTTATGAAAAGGGTGTTAGGGCCAATTTGCACACCTCGACTTATCCACTGAGTACCTATTACCATACAAGTACAGGGTATTCTGCCCATCAAGGCTTAAGCCAATGGGATAAAATCACCTACTGCTCCCATTCTAGCAGTACTGGGTTAACAAATTACACCCCATCTAAACATGGAAGGTCCTTTTTCTGAGAAAGGAGAATAGGATGAAGTAAAATAAAGCAAAATAGAAAGGAAAGGATTTAACTGTGTGCACGTATACACACCCACACGCTGACACACAAGTTTTTCTGTAAAATTTATATGAGGTTTTGAAACTTCTGTACTTTTACAACATTGTTAAGGGATACTGACTTTATTCCTAATAGCCTAATTTTGATGTAAGACATCCTTTATTCCACATGTGGCTGACACAGTTGTAATTGCTGCATTTGCAAATTGATAACTAAAGTCAATTCATATTAAAACCTGGTCACATCCACTTCTATATAATTATTATTTTTGGTCCTGAAGTACATGCAAGGCTTGTAAGAACTTAATTTGGTTTTGAAAATTACCAATCCACTATTTTCCCTTTTGAGGGTACAAATAATATTTTCTTACTGTTCTTGTACTGTGTCCGAGTACTGGTTTTATAGGATGATCATTCTTCTTTTATTTATTTATTGAGAAGGAATTCCGTAACATTATTCAGTGTCGTGAGCTTAAGTAATGTTTGGTTACAACTCAAGGAAATCCTTTGAGAATGAAATATAAATGGAAGAAAGATGTTCATAAGAACATTTGTGTTCTTGATTCTTTAGAAAATGTACTTGCATCCTTTGGTTTTGGGAGAAATGGAAATTGTCCTCTACTTTAGTCATGACTGGCGACTTTACCCTGCTATATAGTTTGCAAGGAGAAGAGGTATTAGGACCTCACCTGATCTCACTTACATTGTCTAAAATAACAGTTTGCATATGCTAATATCTCTTGATTCCACTTGATTATGGTGTTCCATTTTGTATATCCCTTGAAATTGATCTAGAAATGTTTCATGTCTTGCATAAGTTTGCAATTTGTTTGAAAGTGACGTTTGTGAATTTTATCGGCAATCATACTTGGTATGCTTCCATTTATTGTGACTATAGAACCTTCCCCAAATCCCAACAGATGGTGTTGGTGTGCTGTAAAATCTGGTGTTTCTGACGTTTATCATTGCTATGTACTGGGCAATTTTTTCTGGAAGTTTTTAATTTAGAGTTATATCTGAATCCAATCCTAACTTCTGTCATTTTCTCATATTAGGGAATAACAGCTACTGGTGTGAAGAAAGATCAAATTTTTATTGGTGATATAAGTACTCAATATAAGCTTGGAAGTACAGTTGTTGATATCAAAGTTGATACCTATTCCAATGTAAGAGCAGATAGCCTGTCACTTGCACCAGCAATTGCTTGTCCTCTTGATAATCTACTTTGTGATCCTGAGATATATTTAAACTCTTGGATCTCTTATTTGTAAGTGCAACGAATTTCTTATGTGATGTTTATATGTTACCTTATATGCAGGTCTCAACAAAAGTTACACTGGTTGATGTTTTCCGATCCACGAAACTGTCCTTAGGCTTCAACATACCTGATCACAAGTCTGGCAAGGTTAATAGTTGTGCTTTCTCAAGTACTGGTCTAAAGAATCTCTGGTCTGTCTGATACACATCAACTCATGTATGAGCCAAAGAATTAAATTAGTGCTTGTCATGCTACCACAGATATTATGGGCGAAGAGACAAATTAGAGGATAAACGATAGCTCATTTTTAAATTGATTATTTCCAGTTATGTCTTTGTTTCATTGGTAGTACTGGTACACACAGATAATGATTTGTGAGACTTTGTGAAAGCGTCACTGGCTGCTAAGTGAACTATAATTAATGTGCTACCTACTAAGTATTATTCTTAAAAAATTTCTGTAGATGCAAGTAATTCATATAGGTCTATATCATATATTATCACCAATTACATTTTCACCTTATCCATAGCATCCTCTATTCCCTGAGCATCATCATCTTAGGTAATGTTAATTATCATGCAGTGCAATGTTGAACCTTAGAGTTGGACACATGGACTTGAAACATTTAATGAATTTTCATTAATTTATTTTTACTTCAATTCTGACTTGTTTTTGGGGGATAATGTGCTAATTCCAGACTCCTTTATTTACACAACTCAAAATTTGAAATCTTATGAAAGATACACATGTGAAGACGGGTCTATTTGTTAAGTTGTCTTTGAAAATGGGAGTCAATGCTTTACTTATTATCCCTATGGGCATGCACTTAGTGATGACAATTTGTGGGTCATCTAGATTACTGGTTCTACTATTTTCAATAATCAGATGGTGCTAATTTGAAGTTGTGAACGGTATAAAAATCTCAGTTTATTTCTATTACATTCTCTTTTCCAGCAGTTAAGTGGAGTGGAAAGAAAGTAATTGAACCTATCGTGTCAATTAGACGAGCAAGCTACCTGTTATAAAATAGTGTCTAAGCAATATCTAGATTTTGATAGAACTACCTTACCTCATAAGGAAAAATAGTGTGACACGTTTTTTCCAATGTCCTATGATTTTTTTTAAGTAGGAACAGTCTGTATATTATTTGGTTTGTGAATTCAATATCAATCTCTGAATCATTTATTTTGTATTTTCAGCTCGATGTTCAGTACCTTCATCAGCATGCTGCTATCAATTCCAGTATTGGCTTAAATCCCTCCCCTCTCTTGGAGCTCTCGGTTGCTATTGGCAACAAGGATTTAGCCCTTGGTGGAGAAATAGGATTTAATACTGCTTCATCTTCTTTTACGAAGTGCAATGCTGGGCTTAGTTTTAACAAACCGGATTTTTCTGCTGCACTTATGTTGTAAGTATTCTAACGTCTTTTTCTGCTTAATATACTCTTGGTGCTTCTGAGTTCTTCAAATGTTTTCCTGTTAGCTAAGTAAAGGTGGGATGGTTAATCCAACTATGCAACATGCAGTTATATGCTTTTTATTTATTATGTCAATTGCAGAAATAAAAATAAGTTCTACATCTGTAATCTACTAATCTGACTGAATAAATCCTTATATTGTTTTATATAAAAGAAAAAGTAGTTTTCTTGACATTCTTAAGGGGGAAGGAAATGGAGAGAAATCTTGTGTGAGGGAATGCATGTAGTACTAGTTTTAGGAAAAAATTAGCTTTGCTGTTTTGGTTTAAACTACATAAATTTTCCAACCAAATTTTCACCAATTTGAAAGTTAAAGAAGTATATTAGAAACCAATCTCTCTACCCAACAAAGTTAAGGCTTTAGGGGTAAGGTCCGCATATTCCTCACCCTCCCCAGAACCCACTTGTGACTCTGGGTATGTTGTTTAAAAGTTCAAGAAGTGATGTTGTTGTTGAAGCTCTGCAAAATTCAACTAGAATTATTTGAGAAAAAATCTGCCAGAGTTAATGGATGCAATATAATCTTTAGAAAGAACATGCCAGTAATGTCTAATTTTTTGCAGCATGTGTTTAAAGCAAAGTCTGAAAAATAGGCACTCAAATAGGTATAGGAAAGTGGAAACTAGGTTATCTTTCGAATTTCATTAGCAGTATTTAGGAATGCGAAGCGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTGTGCGAGCGCTTCAACGCTTTAAGCGAGCGCTTGATCGCTTGAAGCGTGAAGCGGGGCCTTATCGTTTTTTTCCGCTTCATGCTTCCCTGAACACTGTTCATTAGTTGGAATCCCAGATCTGTGCTTTAGTCTCTTTATGATCTATCTTTGAAGGCATAGATATAGTTGGTAAATAGATAGGTTGAAAGTTTAGAAGTGATATGAAGAAATTGTTAGGGATTAGTATTAAGAAATTAAAACTTTGGTACAAGATGCTAGCTTCAAAAAACATAAAACAACTTATTTTGATACTTAACCTAATTAAAGAAAAACTACTTTTCATCTAAATCAAGAAAATTAAAATGGGTTTTAAGTCATTATCATGATTTTATTTCATATATTTCGCTTAATTATGGATTTTTCTGCTGCACTTATGAAGAATTCACTATGTAGTAATTTTTCTTTGTATTATGCCCGTGTATTTACATAATATATGAATTGAAATAGTGAAATATGGTCATTGAGGGTTCATATAGCCGACCCCCAACTTGTTTGGAACTGGTGTTGTTATTTGCACACAAAGGCCAAATAAATTCTTAGCACTTTCTGGTTTTGACCTAAGTTGCGGACTCTTCACTTTTGATGCCGCACCCATATCGGAATCTCCAAAAATACACTACAGTTGGAGAATCCAACACACACATGTTGACATTTTGAAACTTTTGGGGAAGCCACTATGAAATGAATTACAATAATTTGTCTCAATCCCAAACTAGTTGGGGGCGCAACTGTGACATGAATTACAAAAACTTCTATTTCTGAAGGTTCTTTTCCTGTTGAAACAAGTACATCAAAAAGATTGTGATTGAACTTCCTGAGTAGCACATTTTTTGTTTAAAAACATGTTAATCACATGTTGAAATCTGGAGTCCGGAGCTAAAAGGGAAGATTTTGTTACAAAAATGCCAATAGGGCAAACAAATTCAGAAAAAAAACAAATGCACATGGCCTCACATGCCCCCTTTGTCCCTTAACGGCCAACTAGTAAACGTCAAAGGCAACGCGCATGACTCCACATGCCTTATAAGGCGCAGGGGCCGTGCGCTTTACACCTATTGGTGGCCCCCAAAGGAAACCACAAATTTACCCTAGTTAGGAAATAACTAGGGAAGGTTGAAGAAAAAAATAAAAGAGAAGTCAAAGAGACAGAGAAATTACTTGAGTTTTATATCAGAAAATTTACTTTGGGTATGACATACTCTATTTAATTTATTTATCTTGTTCTTTTACTCATAGAAGTTGTTTTAAATATATTTACTCATGTGTATTTCATTTGTTGTGGTCATGTGATTTTCCTAGTTTACTAGGTTTTCTGGCGACTGAAAGCAGGAGCACCGAAAGGAAAGGAAATATTAGAAGTATTTGATTTGGGTGGGGGGTGGGGGGGCTTTGTTTCAAGGCGTCTGGGGCAATGTGGCCCTTTTGGCTCCGGACTCTTGAATTCTGCATGTCTGGGATATAGCTTTCTATATGCTGTAAGGCCTGTGCGCCTTACACCTTATTGGTGAGCCCCAAAGGAAACCACAACTTTTACCCTAGTTAGGAAATAATTAGAAAAGGTTGAAGAAATAACAAAAGAAAAGTCAAAACAACAATGAAAATGTAATATTTATTTCACTTTTGGTAAAAGTACTTAGAACAAAATCAGTTATTGTATTTTTCAAAAAAACATTTTGACATGATAGTTTTCCATTTTAAGAACAACTTTTTTAAAAAAAAAATCCTTTATCACTGTTTATGTGAACATTTATATAATCAAATTGCTCCTTTTCTCTTTTTCTGCCCGTGTTTCCCTTCTCTTTCTCTCTCTAGATTTTTTCTCCCCCCAACTCTTTTTCTTACATCAATAAAAATACTACATTGCTTAATTTAAGAGAAAGAAATTGATGATACTTTAGTTTTATATCAGAAAATTTACTTTGGATATCACATACTCTATTTAATTTACTTATCTTGTTTCTTTACTAATATAAATTATTTTAACTCATTATGTGTATTTCATTCTGTTGTGGTCATGTCATTTTCCTACTTTACTCAGTTTTCTGGTGCTTATCAAAGGTCACAAAAAGTTGATGAGAGCAATGAGCACCGAAATGCAAGGAAATATTAAAAGTAATTTGATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGGGGGGGGGGGAGTCTTTGGGAAAGAAGGGAATTGGCCCACCAATAAGGTATGGGGCGATGTGCCTTGCCCTTTTGGCTCCGGACTCTTGAAATCTGCATGTCTGGGATATAGCTCGCGCTATATGGTTCTTTGCAATGAGGGTTTGTAATTGTAACTTAATTCCATTTCTCAGTTGTTTCTTGAGCGCATAAAAAGTTGGTCTAGATTAAGTGTATGATCGAGAACTCATACGATGGCTGAAACACTTCAATTTATATTTTTCTAACTGATGATGTACATTAGCTTTATTCATCCTGTCAAAAGCATCTCAAGTATCTAATCTGCACTTTTTGTTGATATCCATGTAGAACGGATAGGGGACAAGCTGTGAAGGCATCATATGTACACTTGGTAGATCCAACAAATGGAACT</genome_strand>
        <mrna_strand>ATCTACTGACCAAAGATTACAGTTATGATCAGAAGTTCACCTTCTCTATTCCGAGCTCCAGTGGGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATAACAGCTACTGGTGTGAAGAAAGATCAAATTTTTATTGGTGATATAAGTACTCAATATAAGCTTGGAAGTACAGTTGTTGATATCAAAGTTGATACCTATTCCAAT........................................................................................................................................................GTCTCAACAAAAGTTACACTGGTTGATGTTTTCCGATCCACGAAACTGTCCTTAGGCTTCAACATACCTGATCACAAGTCTGGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATGTTCAGTACCTTCATCAGCATGCTGCTATCAATTCCAGTATTGGCTTAAATCCCTCCCCTCTCTTGGAGCTCTCGGTTGCTATTGGCAACAAGGATTTAGCCCTTGGTGGAGAAATAGGATTTAATACTGCTTCATCTTCTTTTACGAAGTGCAATGCTGGGCTTAGTTTTAACAAACCGGATTTTTCTGCTGCACTTATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGATAGGGGACAAGCTGTGAAGGCATCATATGTACACTTGGTAGATCCAACAAATGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540159" ref_strand="-" ref_description="SGN-E540159 [TUS-60-E16]">
      <seq>tcaacatacctgatcacaagtctgcaaagctcgatgttcagtaccttcatcagcatgctgctatcaattccagtattggcttaaatccctcccctctcttggagctctcggttgctattggcaacaaggatttagcccttggtggagaaataggatttaatactgcttcatcttcttttacgaagtgcaatgctgggcttagttttaacaaaccggatttttctgctgcacttatgttaacggataggggacaagctgtgaaggcatcatatgtacacttggtagatccaacaaatggaactgaagtaggtgcagagatgatacacagattatctacctacgagaacagcttcagcatcgggagtgctcacaaggtcgactcattaacatcgttgaagactagattttctgacaatgggaaagttgcaatgctttaccagcgggaatggaggccaaagtcacttgttactttctcagccgagtacgacacaaaggcaaagagttcagtacccaagttaggtcttgcccttgctttgaagccataaaaactgcactctctctaattcatccaattttactttgatagcttgactttgttaaaaattctttcaaaaggccacaagtgttgttgccctttacatcttacatcatttttttcttttggtttgtttgttaagatatcatataatgatgataaatttgaaagaatatgttgttacagtaaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="1955" stop="7727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2255" g_stop="2283" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2284" i_stop="3335" i_length="1052">
            <donor d_prob="0.870" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3336" g_stop="3544" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="238" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3545" i_stop="6942" i_length="3398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6943" g_stop="7428" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="724" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="745"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E540159" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2255" e_stop="2283"/>
          <exon e_start="3336" e_stop="3544"/>
          <exon e_start="6943" e_stop="7428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATACCTGATCACAAGTCTGGCAAGGTTAATAGTTGTGCTTTCTCAAGTACTGGTCTAAAGAATCTCTGGTCTGTCTGATACACATCAACTCATGTATGAGCCAAAGAATTAAATTAGTGCTTGTCATGCTACCACAGATATTATGGGCGAAGAGACAAATTAGAGGATAAACGATAGCTCATTTTTAAATTGATTATTTCCAGTTATGTCTTTGTTTCATTGGTAGTACTGGTACACACAGATAATGATTTGTGAGACTTTGTGAAAGCGTCACTGGCTGCTAAGTGAACTATAATTAATGTGCTACCTACTAAGTATTATTCTTAAAAAATTTCTGTAGATGCAAGTAATTCATATAGGTCTATATCATATATTATCACCAATTACATTTTCACCTTATCCATAGCATCCTCTATTCCCTGAGCATCATCATCTTAGGTAATGTTAATTATCATGCAGTGCAATGTTGAACCTTAGAGTTGGACACATGGACTTGAAACATTTAATGAATTTTCATTAATTTATTTTTACTTCAATTCTGACTTGTTTTTGGGGGATAATGTGCTAATTCCAGACTCCTTTATTTACACAACTCAAAATTTGAAATCTTATGAAAGATACACATGTGAAGACGGGTCTATTTGTTAAGTTGTCTTTGAAAATGGGAGTCAATGCTTTACTTATTATCCCTATGGGCATGCACTTAGTGATGACAATTTGTGGGTCATCTAGATTACTGGTTCTACTATTTTCAATAATCAGATGGTGCTAATTTGAAGTTGTGAACGGTATAAAAATCTCAGTTTATTTCTATTACATTCTCTTTTCCAGCAGTTAAGTGGAGTGGAAAGAAAGTAATTGAACCTATCGTGTCAATTAGACGAGCAAGCTACCTGTTATAAAATAGTGTCTAAGCAATATCTAGATTTTGATAGAACTACCTTACCTCATAAGGAAAAATAGTGTGACACGTTTTTTCCAATGTCCTATGATTTTTTTTAAGTAGGAACAGTCTGTATATTATTTGGTTTGTGAATTCAATATCAATCTCTGAATCATTTATTTTGTATTTTCAGCTCGATGTTCAGTACCTTCATCAGCATGCTGCTATCAATTCCAGTATTGGCTTAAATCCCTCCCCTCTCTTGGAGCTCTCGGTTGCTATTGGCAACAAGGATTTAGCCCTTGGTGGAGAAATAGGATTTAATACTGCTTCATCTTCTTTTACGAAGTGCAATGCTGGGCTTAGTTTTAACAAACCGGATTTTTCTGCTGCACTTATGTTGTAAGTATTCTAACGTCTTTTTCTGCTTAATATACTCTTGGTGCTTCTGAGTTCTTCAAATGTTTTCCTGTTAGCTAAGTAAAGGTGGGATGGTTAATCCAACTATGCAACATGCAGTTATATGCTTTTTATTTATTATGTCAATTGCAGAAATAAAAATAAGTTCTACATCTGTAATCTACTAATCTGACTGAATAAATCCTTATATTGTTTTATATAAAAGAAAAAGTAGTTTTCTTGACATTCTTAAGGGGGAAGGAAATGGAGAGAAATCTTGTGTGAGGGAATGCATGTAGTACTAGTTTTAGGAAAAAATTAGCTTTGCTGTTTTGGTTTAAACTACATAAATTTTCCAACCAAATTTTCACCAATTTGAAAGTTAAAGAAGTATATTAGAAACCAATCTCTCTACCCAACAAAGTTAAGGCTTTAGGGGTAAGGTCCGCATATTCCTCACCCTCCCCAGAACCCACTTGTGACTCTGGGTATGTTGTTTAAAAGTTCAAGAAGTGATGTTGTTGTTGAAGCTCTGCAAAATTCAACTAGAATTATTTGAGAAAAAATCTGCCAGAGTTAATGGATGCAATATAATCTTTAGAAAGAACATGCCAGTAATGTCTAATTTTTTGCAGCATGTGTTTAAAGCAAAGTCTGAAAAATAGGCACTCAAATAGGTATAGGAAAGTGGAAACTAGGTTATCTTTCGAATTTCATTAGCAGTATTTAGGAATGCGAAGCGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTGTGCGAGCGCTTCAACGCTTTAAGCGAGCGCTTGATCGCTTGAAGCGTGAAGCGGGGCCTTATCGTTTTTTTCCGCTTCATGCTTCCCTGAACACTGTTCATTAGTTGGAATCCCAGATCTGTGCTTTAGTCTCTTTATGATCTATCTTTGAAGGCATAGATATAGTTGGTAAATAGATAGGTTGAAAGTTTAGAAGTGATATGAAGAAATTGTTAGGGATTAGTATTAAGAAATTAAAACTTTGGTACAAGATGCTAGCTTCAAAAAACATAAAACAACTTATTTTGATACTTAACCTAATTAAAGAAAAACTACTTTTCATCTAAATCAAGAAAATTAAAATGGGTTTTAAGTCATTATCATGATTTTATTTCATATATTTCGCTTAATTATGGATTTTTCTGCTGCACTTATGAAGAATTCACTATGTAGTAATTTTTCTTTGTATTATGCCCGTGTATTTACATAATATATGAATTGAAATAGTGAAATATGGTCATTGAGGGTTCATATAGCCGACCCCCAACTTGTTTGGAACTGGTGTTGTTATTTGCACACAAAGGCCAAATAAATTCTTAGCACTTTCTGGTTTTGACCTAAGTTGCGGACTCTTCACTTTTGATGCCGCACCCATATCGGAATCTCCAAAAATACACTACAGTTGGAGAATCCAACACACACATGTTGACATTTTGAAACTTTTGGGGAAGCCACTATGAAATGAATTACAATAATTTGTCTCAATCCCAAACTAGTTGGGGGCGCAACTGTGACATGAATTACAAAAACTTCTATTTCTGAAGGTTCTTTTCCTGTTGAAACAAGTACATCAAAAAGATTGTGATTGAACTTCCTGAGTAGCACATTTTTTGTTTAAAAACATGTTAATCACATGTTGAAATCTGGAGTCCGGAGCTAAAAGGGAAGATTTTGTTACAAAAATGCCAATAGGGCAAACAAATTCAGAAAAAAAACAAATGCACATGGCCTCACATGCCCCCTTTGTCCCTTAACGGCCAACTAGTAAACGTCAAAGGCAACGCGCATGACTCCACATGCCTTATAAGGCGCAGGGGCCGTGCGCTTTACACCTATTGGTGGCCCCCAAAGGAAACCACAAATTTACCCTAGTTAGGAAATAACTAGGGAAGGTTGAAGAAAAAAATAAAAGAGAAGTCAAAGAGACAGAGAAATTACTTGAGTTTTATATCAGAAAATTTACTTTGGGTATGACATACTCTATTTAATTTATTTATCTTGTTCTTTTACTCATAGAAGTTGTTTTAAATATATTTACTCATGTGTATTTCATTTGTTGTGGTCATGTGATTTTCCTAGTTTACTAGGTTTTCTGGCGACTGAAAGCAGGAGCACCGAAAGGAAAGGAAATATTAGAAGTATTTGATTTGGGTGGGGGGTGGGGGGGCTTTGTTTCAAGGCGTCTGGGGCAATGTGGCCCTTTTGGCTCCGGACTCTTGAATTCTGCATGTCTGGGATATAGCTTTCTATATGCTGTAAGGCCTGTGCGCCTTACACCTTATTGGTGAGCCCCAAAGGAAACCACAACTTTTACCCTAGTTAGGAAATAATTAGAAAAGGTTGAAGAAATAACAAAAGAAAAGTCAAAACAACAATGAAAATGTAATATTTATTTCACTTTTGGTAAAAGTACTTAGAACAAAATCAGTTATTGTATTTTTCAAAAAAACATTTTGACATGATAGTTTTCCATTTTAAGAACAACTTTTTTAAAAAAAAAATCCTTTATCACTGTTTATGTGAACATTTATATAATCAAATTGCTCCTTTTCTCTTTTTCTGCCCGTGTTTCCCTTCTCTTTCTCTCTCTAGATTTTTTCTCCCCCCAACTCTTTTTCTTACATCAATAAAAATACTACATTGCTTAATTTAAGAGAAAGAAATTGATGATACTTTAGTTTTATATCAGAAAATTTACTTTGGATATCACATACTCTATTTAATTTACTTATCTTGTTTCTTTACTAATATAAATTATTTTAACTCATTATGTGTATTTCATTCTGTTGTGGTCATGTCATTTTCCTACTTTACTCAGTTTTCTGGTGCTTATCAAAGGTCACAAAAAGTTGATGAGAGCAATGAGCACCGAAATGCAAGGAAATATTAAAAGTAATTTGATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGGGGGGGGGGGAGTCTTTGGGAAAGAAGGGAATTGGCCCACCAATAAGGTATGGGGCGATGTGCCTTGCCCTTTTGGCTCCGGACTCTTGAAATCTGCATGTCTGGGATATAGCTCGCGCTATATGGTTCTTTGCAATGAGGGTTTGTAATTGTAACTTAATTCCATTTCTCAGTTGTTTCTTGAGCGCATAAAAAGTTGGTCTAGATTAAGTGTATGATCGAGAACTCATACGATGGCTGAAACACTTCAATTTATATTTTTCTAACTGATGATGTACATTAGCTTTATTCATCCTGTCAAAAGCATCTCAAGTATCTAATCTGCACTTTTTGTTGATATCCATGTAGAACGGATAGGGGACAAGCTGTGAAGGCATCATATGTACACTTGGTAGATCCAACAAATGGAACTGAAGTAGGTGCAGAGATGATACACAGATTATCTACCTACGAGAACAGCTTCAGCATCGGGAGTGCTCACAAGGTCGACTCATTAACATCGTTGAAGACTAGATTTTCTGACAATGGGAAAGTTGCAATGCTTTACCAGCGGGAATGGAGGCCAAAGTCACTTGTTACTTTCTCAGCCGAGTACGACACAAAGGCAAAGAGTTCAGTACCCAAGTTAGGTCTTGCCCTTGCTTTGAAGCCATAAAAACTGCACTCTCTCTAATTCATCCAATTTTACTTTGATAGCTTGACTTTGTTAAAAATTCTTTCAAAAGGCCACAAGTGTTGTTGCCCTTTACATCTTACATCATTTTTTTCTTTTGGTTTGTTTGTTAAGATATCATATAATGATGATAAATTTGAAAGAATATGTTGTTACAGTAG</genome_strand>
        <mrna_strand>TCAACATACCTGATCACAAGTCTGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATGTTCAGTACCTTCATCAGCATGCTGCTATCAATTCCAGTATTGGCTTAAATCCCTCCCCTCTCTTGGAGCTCTCGGTTGCTATTGGCAACAAGGATTTAGCCCTTGGTGGAGAAATAGGATTTAATACTGCTTCATCTTCTTTTACGAAGTGCAATGCTGGGCTTAGTTTTAACAAACCGGATTTTTCTGCTGCACTTATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGATAGGGGACAAGCTGTGAAGGCATCATATGTACACTTGGTAGATCCAACAAATGGAACTGAAGTAGGTGCAGAGATGATACACAGATTATCTACCTACGAGAACAGCTTCAGCATCGGGAGTGCTCACAAGGTCGACTCATTAACATCGTTGAAGACTAGATTTTCTGACAATGGGAAAGTTGCAATGCTTTACCAGCGGGAATGGAGGCCAAAGTCACTTGTTACTTTCTCAGCCGAGTACGACACAAAGGCAAAGAGTTCAGTACCCAAGTTAGGTCTTGCCCTTGCTTTGAAGCCATAAAAACTGCACTCTCTCTAATTCATCCAATTTTACTTTGATAGCTTGACTTTGTTAAAAATTCTTTCAAAAGGCCACAAGTGTTGTTGCCCTTTACATCTTACATCATTTTTTTCTTTTGGTTTGTTTGTTAAGATATCATATAATGATGATAAATTTGAAAGAATATGTTGTTACAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286467" ref_strand="+" ref_description="SGN-E286467 [cLES-12-A20]">
      <seq>ttaacaaagtcaagctatcaaagtaaaattggatgaattagagagagtgcagtttttatggcttcaaagcaagggcaagacctaacttgggtactgaactctttgcctttgtgtcgtactcggctgagaaagtaacaagtgactttggcctccattcccgctggtaaagcattgcaactttcccattgtcagaaaatctagtcttcaacgatgttaatgagtcgaccttgtgagcactcccgatgctgaagctgttctcgtaggtagataatctgtgtatcatctctgcacctacttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="-" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="7604" stop="6705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7304" g_stop="7005" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="-" ref_id="SGN-E286467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7304" e_stop="7005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAAAGTCAAGCTATCAAAGTAAAATTGGATGAATTAGAGAGAGTGCAGTTTTTATGGCTTCAAAGCAAGGGCAAGACCTAACTTGGGTACTGAACTCTTTGCCTTTGTGTCGTACTCGGCTGAGAAAGTAACAAGTGACTTTGGCCTCCATTCCCGCTGGTAAAGCATTGCAACTTTCCCATTGTCAGAAAATCTAGTCTTCAACGATGTTAATGAGTCGACCTTGTGAGCACTCCCGATGCTGAAGCTGTTCTCGTAGGTAGATAATCTGTGTATCATCTCTGCACCTACTTCAG</genome_strand>
        <mrna_strand>TTAACAAAGTCAAGCTATCAAAGTAAAATTGGATGAATTAGAGAGAGTGCAGTTTTTATGGCTTCAAAGCAAGGGCAAGACCTAACTTGGGTACTGAACTCTTTGCCTTTGTGTCGTACTCGGCTGAGAAAGTAACAAGTGACTTTGGCCTCCATTCCCGCTGGTAAAGCATTGCAACTTTCCCATTGTCAGAAAATCTAGTCTTCAACGATGTTAATGAGTCGACCTTGTGAGCACTCCCGATGCTGAAGCTGTTCTCGTAGGTAGATAATCTGTGTATCATCTCTGCACCTACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549181" ref_strand="+" ref_description="SGN-E549181 [TUS-68-A19]">
      <seq>gtgtgacatacacttattccgatgttgatcttgctgccaaaagaatcgccctagggctccacaaactcggtatcgaacaaagagatatcatcatgatcttacttccgaactcgcccgaattcgtgttctcgttcctcggggcatcgttccgaggcgcgataagcacgaccgcgaacccgttctacactccgtccgaaattacgaagcaagcgaaagcatcgaacgcaaagctcatcgtaacgcaatcgtgctacgtcgataaaatcaagcgttacgccgaggaaaatagagttaaaatcgtgtgcgtggacgattccttgctgttgcccgatggatgtcttagtttcgcggagttattattaactaccactcatccatcggacgaaaacaattctaatgatgacaacatcattttatctgatagtgtaaaaattcttcctgatgatgtggtggcattaccttattcgtccggtacgacggggttaccaaaaggagtgatgcttacacataaaggacttgttacaagtgtggcacaacaagttgatggtgaaaaccctaatctttatttccatagtgaagatgtgatcatgtgtgttttgccattgtttcatatttattctctcaattcaattttgctttgtggattgagagttggtgcaactattttgataatgcaaaaatttgagataaaaggtttaatggaattagtggagaaatataaagtaacaattgcaccatttgtgccacctattgtattggctattgcaaaaagtccattgggtagataatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="9328" stop="10721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9628" g_stop="10421" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E549181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9628" e_stop="10421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCCGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATT-GGTAGATAAATATGAT</genome_strand>
        <mrna_strand>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCTGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATTGGGTAGAT-AATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311829" ref_strand="+" ref_description="SGN-E311829 [cLEZ-9-H14]">
      <seq>tgtgacatacacttattccgatgttgatcttgctgccaaaagaatcgccctagggctccacaaactcggtatcgaacaaagagatatcatcatgatcttacttccgaactcgcccgaattcgtgttctcgttcctcggggcatcgttccgaggcgcgataagcacgaccgcgaacccgttctacactccgtccgaaattacgaagcaagcgaaagcatcgaacgcaaagctcatcgtaacgcaatcgtgctacgtcgataaaatcaagcgttacgccgaggaaaatagagttaaaatcgtgtgcgtggacgattccttgctgttgcccgatggatgtcttagtttcgcggagttattattaactaccactcatccatcggacgaaaacaattctaatgatgacaacatcattttatctgatagtgtaaaaattcttcctgatgatgtggtggcattaccttattcgtccggtacgacggggttaccaaaaggagtgatgcttacacataaaggacttgttacaagtgtggcacaacaagttgatggtgaaaaccctaatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="9329" stop="10492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9629" g_stop="10192" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E311829" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9629" e_stop="10192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCCGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTA</genome_strand>
        <mrna_strand>TGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCTGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723318" ref_strand="+" ref_description="SGN-E723318 [FC20AE11]">
      <seq>ggccaatcggccgaatttgagagaaggaagaaccctgttgagaagagacgccgccgcagaaatccataggattagacatatgggtgagggaggtgtagtagttccagagtctgtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctataacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggctaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgttacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtcgttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtaggaccacacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14565" stop="17422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14869" g_stop="14926" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="70" r_length="58" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="253" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="351" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="409" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="489" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="592" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17122" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="666" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E723318" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14869" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCAGGGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAA</genome_strand>
        <mrna_strand>GAATTTGAGAGAAGGAAGAACCCTGTTGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGACATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCTGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTATAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCTAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTTACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTCGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTAGGACCACACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722622" ref_strand="+" ref_description="SGN-E722622 [FC17DC11]">
      <seq>gagagaaggaagaactctgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtctgtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctataacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggctaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgttacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtcgttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtaggaccacacttcaaggaggctaacaactttctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaactgttttgtatattgaattagacacatttctgcctgaggttaaaaattggtctttggattaagtatgctaattgcctctggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14576" stop="17708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14875" g_stop="14926" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="235" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="333" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="391" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="471" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="574" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17408" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="934" r_length="360" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E722622" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14875" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTT</genome_strand>
        <mrna_strand>GAGAGAAGGAAGAACTCTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCTGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTATAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCTAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTTACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTCGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTAGGACCACACTTCAAGGAGGCTAACAACTTTCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACTGTTTTGTATATTGAATTAGACACATTTCTGCCTGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260843" ref_strand="+" ref_description="SGN-E260843 [cLEG-55-E19]">
      <seq>aaggaagaagactgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggactgggctcttgtaaagaaacaagagcttgcagttgccaagaaaaagagcgttgagaatcataaacttatctacaacagaactaaacagtatgctacggagtactcacagcatgacaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14580" stop="15918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14880" g_stop="14926" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="230" r_length="183" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15618" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="291" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E260843" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14880" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATC</genome_strand>
        <mrna_strand>AAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGACTGGGCTCTTGTAAAGAAACAAGAGCTTGCAGTTGCCAAGAAAAAGAGCGTTGAGAATCATAAACTTATCTACAACAGAACTAAACAGTATGCTACGGAGTACTCACAGCAT..........................................................................................GACAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710117" ref_strand="+" ref_description="SGN-E710117 [FA54BB07]">
      <seq>cggatagactgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatcttgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagaaaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcctcaatgagctcatcaggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14586" stop="17558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14882" g_stop="14926" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="227" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="325" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="566" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17258" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="776" r_length="210" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E710117" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14882" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATG</genome_strand>
        <mrna_strand>CGGATA-GACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTTGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAAAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCCTCAATGAGCTCATCAGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705594" ref_strand="+" ref_description="SGN-E705594 [FA27CD08]">
      <seq>gaagactgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatcttgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactanaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgtttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatgaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaactcggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14586" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14886" g_stop="14926" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="224" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="380" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="460" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="563" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17451" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="964" r_length="401" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="965" polyA_stop="986"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E705594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14886" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>GAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTTGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTANAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTG-TTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAAT-GAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208636" ref_strand="+" ref_description="SGN-E208636 [cLEC-39-C2]">
      <seq>agactgcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14588" stop="15748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14888" g_stop="14926" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15448" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="203" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E208636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14888" e_stop="14926"/>
          <exon e_start="15285" e_stop="15448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGC</genome_strand>
        <mrna_strand>AGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729171" ref_strand="+" ref_description="SGN-E729171 [LA20AH02]">
      <seq>ctgcgagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaaccacgttatggaaaggtagacaagcggagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14591" stop="17373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14891" g_stop="14926" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="218" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="316" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="374" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="454" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="557" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17073" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="582" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E729171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14891" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTT</genome_strand>
        <mrna_strand>CTGC-GAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACCACGTTATGGAAAGGTAGACAAGCGGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303356" ref_strand="+" ref_description="SGN-E303356 [cLEX-2-K22]">
      <seq>gcagagaagagacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtgttgaagaagcccaagaagaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgcgaacatgctgcatagggttgagccatatgtcacatacagctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14593" stop="17372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14893" g_stop="14926" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="217" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="373" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="453" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="556" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17072" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="580" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E303356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14893" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAAGAGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATT</genome_strand>
        <mrna_strand>GCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTGTTGAAGAAGCCCAAGAAGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGCGAACATGCTGCATAGGGTTGAGCCATATGTCACATACAG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308153" ref_strand="+" ref_description="SGN-E308153 [cLEY-14-G16]">
      <seq>agacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14602" stop="17145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14902" g_stop="14926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="208" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="306" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="364" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="444" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16845" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="539" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E308153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14902" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAG</genome_strand>
        <mrna_strand>AGACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317100" ref_strand="+" ref_description="SGN-E317100 [cTOA-27-J19]">
      <seq>gacgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttctacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtgggaccacacttcaaggaggctaacgacttcctatggcctttccaactcaaggcacctcttggtggactacataagaagacaaactactacgttgaaagcggtgatgctggaaatcgcgagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14603" stop="17533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14903" g_stop="14926" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="207" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="305" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="363" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="443" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="546" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17233" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="731" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E317100" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14903" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTT</genome_strand>
        <mrna_strand>GACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACGACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTACATAAGAAGACAAACTACTACGTTGAAAGCGGTGATGCTGGAAATCGCGAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347020" ref_strand="+" ref_description="SGN-E347020 [cTOF-25-K12]">
      <seq>acgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacaggtgagtttttgatgtttcctgtttaatatgtatataaatatgtaagaagatgctggttctagttttaaccgtcacaaaaatatgatgatcaaatttatgtattattggattatgttttcctttctctagtttccttgccgctctgtaactttaagtgattcaatctgctcaacatggctgcagattgtaccattattaggtcagttacatgttgttttcaatccaaagctttagaatagagcatttaagctttcaatttcatcttttacatccatgccaagataacctttgacattcaactttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14604" stop="16401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14904" g_stop="14926" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="206" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="304" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="16101" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="669" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E347020" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14904" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="16101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATG</genome_strand>
        <mrna_strand>ACGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCC-AAAGCTTTAGAATAGAGCATTTAAGCTTTCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688051" ref_strand="+" ref_description="SGN-E688051 [T3_tus_85_F21]">
      <seq>cgccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttaaaagtttggttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaaggttaaaattggtctttgggataagtatgctattggcctctggttttttccttgttcaaattaaaatggaagtggggtttgttccatttatattatgggttccggcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14605" stop="17771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14905" g_stop="14926" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="205" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="303" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="361" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="441" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="544" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17049" g_stop="17459" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="954" r_length="410" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="967" polyA_stop="977"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E688051" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>955</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14905" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTTATATTATG</genome_strand>
        <mrna_strand>CGCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAAAAGTTTGGTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAAGGTTAAAATTGGTCTTTGGGATAAGTATGCTATTGGCCTCTGGTTTTTTCCTTGTTCAA-ATTAAAATGGAAGTGGGGTTTGTTCCATTTATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281741" ref_strand="+" ref_description="SGN-E281741 [cLER-14-I3]">
      <seq>gccgccgcagaaatccataggattagagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14606" stop="17088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14906" g_stop="14926" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15285" g_stop="15467" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="204" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="360" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="440" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16751" g_stop="16788" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="478" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E281741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14906" e_stop="14926"/>
          <exon e_start="15285" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCCGCAGAAATCCATAGGGTAATCAAATTCTCATCTTCGATTTATGTTTCTCTTATGAATTTATCGATCTTCTGAGCATTTCACAAAAAAAAATCATCTTTTTTGAGCTAAAGGAAAAGATACTAGGCTTAGACGTTTTGGAATGAGCTTGTTGTGTATAAAGTTTGAGCATTTGATCGATTCGTTGATTTGGGTTTTAGATAATAGCCTTAGTTTTTGATTTGTTGAAATGGGTTTGTGTCAAAAGCTTCAATTTGTTTGATTCTTGAATTTTTTGTGTGTATGTGTGTGGGAGGAGGAGTGGGGGGTGGGTGTTATCTGTTTTTTTCTGTTCAGAGTATTGCTGTTTCTCTAAAGTTGTATTTTTGTGCTGTAGATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACA</genome_strand>
        <mrna_strand>GCCGCCGCAGAAATCCATAGG......................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339582" ref_strand="+" ref_description="SGN-E339582 [cTOE-16-D7]">
      <seq>gagatatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14989" stop="17091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15289" g_stop="15467" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="277" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="335" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="415" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16751" g_stop="16791" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="456" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E339582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15289" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAAC</genome_strand>
        <mrna_strand>GAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335357" ref_strand="+" ref_description="SGN-E335357 [cTOE-2-G21]">
      <seq>atatgggtgagggaggtgtagtagttccagagtcggtattgaagaagcagaacaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagatgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="14992" stop="17086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15292" g_stop="15467" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="274" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="332" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16751" g_stop="16786" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="448" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E335357" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15292" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTA</genome_strand>
        <mrna_strand>ATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAACAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGATGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248456" ref_strand="+" ref_description="SGN-E248456 [cLEF-59-N3]">
      <seq>aattccagagtcggtattgaagaagcagaaaaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagtcgccaagaaaaagtgtgttgagaatcgcaaacttatctataacagagctaaacagtatgctaaggagtactcagagcaggagaaggagctgatccgtttgaagcgcgaagcacgattgaagggaggattctatgttgaccccgaagcaaagttgcttttcattatcagaatccgtgggattaacgcaatgcctcctcagacaaaaaagattctgcagcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15014" stop="16081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15314" g_stop="15467" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="252" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15781" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="298" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E248456" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15314" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTC</genome_strand>
        <mrna_strand>AATTCCAGAGTCGGTATTGAAGAAGCAGAAAAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTCGCCAAGAAAAAGTGTGTTGAGAATCGCAAACTTATCTATAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGCTGATCCGTTTGAAGCGCGAAGCACGATTGAAGGGAGGATTCTATGTTGACCCCGAAGCAAAGTTGCTTTTCATTATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACAAAAAAGATTCTGCAGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212283" ref_strand="+" ref_description="SGN-E212283 [cLEC-75-D16]">
      <seq>tccagagtcggtattgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaattcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15017" stop="17592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15317" g_stop="15467" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="249" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="307" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="387" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="490" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17049" g_stop="17292" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="733" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E212283" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15317" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGT</genome_strand>
        <mrna_strand>TCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAA-TTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701311" ref_strand="+" ref_description="SGN-E701311 [FA15CE02]">
      <seq>attgaagaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatcttgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttnaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15029" stop="17728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15329" g_stop="15467" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="237" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="295" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="375" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="478" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17049" g_stop="17428" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="859" r_length="381" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E701311" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15329" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACT-AAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAA</genome_strand>
        <mrna_strand>ATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTTGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTNAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317611" ref_strand="+" ref_description="SGN-E317611 [cTOB-8-A22]">
      <seq>agaagcagaagaggaatgaggagtgggctcttgtaaagaagcaagagcttgcagttgccaagaaaaagagtgttgagaatcgtaaacttatctacaacagagctaaacagtatgctaaggagtactcagagcaggagaaggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15034" stop="17374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15334" g_stop="15467" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="232" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="290" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="370" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="473" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17049" g_stop="17074" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="499" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E317611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15334" e_stop="15467"/>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAGGTAATTTATAAACTAAAATGTCTCAGTAAATGATGCTGATTTTTTCCCTTTGTTATTGAGGTATTTAAGAGTTTCTGTTTATGCATTTAGGAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTG</genome_strand>
        <mrna_strand>AGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG..........................................................................................GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712091" ref_strand="+" ref_description="SGN-E712091 [FB03DE02]">
      <seq>ccgatggagttgatccgtttgaagcgcgaggcacgattgaagggaggattctatgttgatccagaggccaagttgctcttcatcatcagaatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatcttgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15260" stop="17751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15558" g_stop="15655" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="156" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="236" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="339" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17049" g_stop="17451" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="742" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E712091" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15558" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>CCGATGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTTGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714386" ref_strand="+" ref_description="SGN-E714386 [FB11BC02]">
      <seq>ccttatccgtgggattaacgcaatgcctcctcagactaaaaagattctgcagcttctcagattgcgacagatcttcaacggtgtcttcttgaaagttaacaaggccaccgtgaacatgctgcatagggttgagccatatgttacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtcgttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtaggaccacacttcaaggaggctaacaactttctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaactgtttgtaatattgaattagacacatttctgcctgaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcactttaagaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15435" stop="17752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15644" g_stop="15655" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15736" g_stop="15793" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="70" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16565" g_stop="16644" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="150" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="253" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17049" g_stop="17461" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="665" r_length="412" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E714386" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15644" e_stop="15655"/>
          <exon e_start="15736" e_stop="15793"/>
          <exon e_start="16565" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCCGTGGGTAAGATGTTGCTGGATTGTTTAAATCTGGGATTTGATGAATTGATTCCTGTTTATCCACTTGTCATTTTGAATTTTCAGGATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCTGTGATAGTACATGATTGGACTGCCATTTTACTTGGTACATCTTTTACTTTTTGTGGTTACTTCATGATTTCTACTAGTGAGTTGTTACAAAGACTAAGTTGTGTTGCGGAAGGACATACCAATCTCTGTCCCGGCATTACAGCTATGCTCTTGTTTTAGATTGCCAGTTACTCTTTTCTTTAGATCTTTTCTGAAGATGTGATAACTTGCTATTGAATTGCTTTTAAACTTTTGCACTTTGGATTTTATGTTTGTTTTTCTTTATTTAAGTCTCTTATTGTTCTTGTTTTAGTACTTACCCAGCTCATTTTTGTCTGTCTAATGAGATGACTCTTTGCTATATGACAGATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTTATATTATGGT</genome_strand>
        <mrna_strand>CCTTATCCGTGG................................................................................GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTTACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTCGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTAGGACCACACTTCAAGGAGGCTAACAACTTTCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACTGTTTGTAATATTGAATTAGACACATTTCTGCCTGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCACTTTA-AGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201195" ref_strand="+" ref_description="SGN-E201195 [cLEC-10-I3]">
      <seq>tttaagtgattcaatctgctcaacatggctgcagattgtaccattattaggtcagttacatgttgttttcaatccaaaagctttagaatagagcatttaagcttccaatttcatcttttacatccatgccaagataacctttgacattcaactttgatggaggagttgattcattcatttcattttctaacatctaggctttacattatttagtcgattcgttcattacactttcttatcatgtaactttgcacatagttttatcttttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="15643" stop="16516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15943" g_stop="16216" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E201195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15943" e_stop="16216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</genome_strand>
        <mrna_strand>TTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348242" ref_strand="+" ref_description="SGN-E348242 [cTOF-27-E2]">
      <seq>gaacatgctgcatagggttgagccatatgtcacatacggctatcccaacttaaagagtatcaaggaattgatctacaaacgaggttatggaaaggtagacaagcagagaattgctttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatctcgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16306" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16606" g_stop="16644" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16751" g_stop="16853" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="142" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17049" g_stop="17451" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="545" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="557"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E348242" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16606" e_stop="16644"/>
          <exon e_start="16751" e_stop="16853"/>
          <exon e_start="17049" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGCTGCATAGGGTTGAGCCATATGTCACATACGGGTATCATTCTATTCTTGTTCTAATGCGTTGTATCCTTCTGAGATTAATTTTGATTTTGGAGTTCCTCTATCTGTTATTGATTGATGAATCTCTTCAATTTTCCCAGCTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>GAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG..........................................................................................................CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288281" ref_strand="+" ref_description="SGN-E288281 [cLES-16-H23]">
      <seq>tttgaccgacaatgctgtagttgagcaggtgttgggcaaacatggaatcatttgcatcgaagatcttgttcacgagatcatcactgtgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaagcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16526" stop="17724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16826" g_stop="16853" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17049" g_stop="17424" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="404" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E288281" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16826" e_stop="16853"/>
          <exon e_start="17049" e_stop="17424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCGACAATGCTGTAGTTGAGCAGGTTGGTGCAAAGTATATTTGAAATTCATTCATAGTGTCCCGACAAACCTCTCTTTAACATTATTCGTCTGGATATTTCTTTGGCTATAATATATAATATAAAACATAACATAAATTCAAGAATCCCCTAAGCTTCAAACGAAAGGATACCCTAATCTCTACAGCTTTTTCATCACAATGCGCTCCCATGTTGTAGGTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATT</genome_strand>
        <mrna_strand>TTTGACCGACAATGCTGTAGTTGAGCAG...................................................................................................................................................................................................GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTTGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAAGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222275" ref_strand="+" ref_description="SGN-E222275 [cLEL-16-F23](-)">
      <seq>gagatcatcactgtgggaccacacttcaagaggctaacaacttccatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16794" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17094" g_stop="17451" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E222275" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17094" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>GAGATCATCACTGTGGGACCACACTTCAA-GAGGCTAACAACTTCC-ATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352351" ref_strand="+" ref_description="SGN-E352351 [cTOS-9-K4]">
      <seq>tgggaccacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16807" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17107" g_stop="17451" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="356"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E352351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17107" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>TGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTG-ACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551955" ref_strand="+" ref_description="SGN-E551955 [cTSB-2-G11]">
      <seq>accacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16811" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17111" g_stop="17451" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E551955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17111" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552335" ref_strand="+" ref_description="SGN-E552335 [cTSB-3-J19]">
      <seq>accacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16811" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17111" g_stop="17451" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E552335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17111" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552391" ref_strand="+" ref_description="SGN-E552391 [cTSB-3-M14]">
      <seq>accacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16811" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17111" g_stop="17451" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E552391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17111" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552489" ref_strand="+" ref_description="SGN-E552489 [cTSB-4-B18]">
      <seq>accacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16811" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17111" g_stop="17451" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E552489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17111" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553208" ref_strand="+" ref_description="SGN-E553208 [cTSB-2-N4]">
      <seq>accacacttcaaggaggctaacaacttcctatggcctttccaactcaaggcacctcttggtggactaaaaaagaagagaaaccactacgttgaaggcggtgatgctggaaatcgcgagaatttcatcaatgagctcatcaggaggatgaactaaaacatctctcactaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16811" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17111" g_stop="17451" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E553208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17111" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>ACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222697" ref_strand="+" ref_description="SGN-E222697 [cLEL-16-F23](-)">
      <seq>ttcctatggcctttccaactcaaggcacctcatggtggactaataaagaagaggagccactgcgttgaaggcggtgatgctggaaatcgcgagaatttcaccaatgagctcatcaggaggatgaactacaacatctctcgctaagcaacagttttgtttctttagaagtttgtttttggtgttttgaaccgtttgtaatattgaactagacacatttctgccagaggttaaaaattggtctttggattaagtatgctaattgcctctggttttttcattgttcaatattaaaatggaagtgtgctttgttcaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="+" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="16836" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17136" g_stop="17451" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="333"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="+" ref_id="SGN-E222697" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17136" e_stop="17451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</genome_strand>
        <mrna_strand>TTCCTATGGCCTTTCCAACTCAAGGCACCTCATGGTGGACTAATAAAGAAGAGGAGCCACTGCGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCACCAATGAGCTCATCAGGAGGATGAACTACAACATCTCTCGCTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="-" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="59053" stop="57996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58753" g_stop="58295" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58753" e_stop="58295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATGCCTTGAACTTTGATAAAAGAATCATATATATCCCTAAATAATTTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCATTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGATATATCAGACCCTTTTCTCTTACTTTGTTCCATTCATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547245" ref_strand="+" ref_description="SGN-E547245 [TUS-71-A11](-)">
      <seq>acaagtcagtctagcagattgggcattacactgccataggaaaaatactaccaaggaacttatggatccacatattaaaggggagattatagaagaatgtctgaagcaattcatcgatacagcagtgagttgtttgtctgatcacggaactgatcgtccttcaatgggttcagtgctgtggaatcttgagtactgccttcagttgcaaagtgatcccgatgaaccaaaaatggtggcggaacagaaagctaatgatgcctatgctatgcataaagagttgttaacggttgcagaagaaggtaaggagtcagcagaggacagcacggacactgtcttctcacaaattgtaaatccacaaggtagatagttgcttagttctaccgttgtgcttttgtttttgtttagatgtttcctgtcaatactagcaattatgaagagagtttataattgaccatgaagcttgcttagcttgtacagcaccttcatttccaacaggtaggttgggtgttcgagtcatgtggatggtacatggaagtactaataatcctcctagactgggggtggaaaaaaaatacacttgtagcttgtacctctgttattcttagtgccttcattattgcttccctgcgagtgaagcatgttcaatgttatagctgcactgcttatggttagcacaagtcttattttctaagactgaatctctatttggtccgcgttattattcaagaaagtaaacagataaactagtagaacaatttacaatcgaataaacaaattggttatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0085O20-Ep5xK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0085O20.1" temp_strand="-" temp_description="C07HBa0085O20.1  AC232645.1 htgs_phase:2 submitted_to_sgn_as:gi|205831295|gb|AC232645.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0085O20, *** SEQUENCING IN PROGRESS ***, 12 ordered pieces">
        <position start="60394" stop="59009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60094" g_stop="59310" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="796"/>
      <MATCH_line gen_id="C07HBa0085O20.1" gen_strand="-" ref_id="SGN-E547245" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0085O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60094" e_stop="59310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCAGTCTAGCAGATTGGGCATTACACTGCCATAGGAAAAATACTACCATGGAACTTATGGATCCACATATTAAAGGGGAGATTATAGAAGAATGTCTGAAGCAATTCATCGATACAGCAGTGAGTTGTTTGTCTGATCACGGAACTGATCGTCCTTCAATGGGTTCAGTGCTGTGGAATCTTGAGTACTGCCTTCAGTTGCAAAGTGATCCCGATGAACCAAAAATGGTGGCGGAACAGAAAGCTAATGATGCCTATGCTATGCATAAAGAGTTGTTAACGGTTGCAGAAGAAGGTAAGGAGTCAGCAGAGGACAGCACGGACACTGTCTTCTCACAAATTGTAAATCCACAAGGTAGATAGTTGCTTAGTTCTACCGTTGTGCTTTTGTTTTTGTTTAGATGTTTCCTGTCAATATTAGCAATTATGAAGAGAGTTTATAATTGACCATGAAGCTTGCTTAGCTTGTACAACACCTTCATTTCCAACAGGTAGGTTGGGTGTTCGAGTCATGTGGATGGTACATGGAAGTACTAATAATCCTCCTAGACTGGGGGTGGAAAAAAAATACAGTTGTAGCTTGTACCTCTGTTATTCTTAGTGCCTTCATTATTGCTTCCCTGCGAGTGAAGCATGTTCAATGTTATAGCTGCACTGCTTATGGTTAGCACAAGTCTTATTTTCTGAGACTGAATCTCTATTTGGTCCGCGTTATTATTCAAGAAAGTAAACAGATAAACTAGTAGAACAATTTACAATCGAATAAACAAATTGGTTATAT</genome_strand>
        <mrna_strand>ACAAGTCAGTCTAGCAGATTGGGCATTACACTGCCATAGGAAAAATACTACCAAGGAACTTATGGATCCACATATTAAAGGGGAGATTATAGAAGAATGTCTGAAGCAATTCATCGATACAGCAGTGAGTTGTTTGTCTGATCACGGAACTGATCGTCCTTCAATGGGTTCAGTGCTGTGGAATCTTGAGTACTGCCTTCAGTTGCAAAGTGATCCCGATGAACCAAAAATGGTGGCGGAACAGAAAGCTAATGATGCCTATGCTATGCATAAAGAGTTGTTAACGGTTGCAGAAGAAGGTAAGGAGTCAGCAGAGGACAGCACGGACACTGTCTTCTCACAAATTGTAAATCCACAAGGTAGATAGTTGCTTAGTTCTACCGTTGTGCTTTTGTTTTTGTTTAGATGTTTCCTGTCAATACTAGCAATTATGAAGAGAGTTTATAATTGACCATGAAGCTTGCTTAGCTTGTACAGCACCTTCATTTCCAACAGGTAGGTTGGGTGTTCGAGTCATGTGGATGGTACATGGAAGTACTAATAATCCTCCTAGACTGGGGGTGGAAAAAAAATACACTTGTAGCTTGTACCTCTGTTATTCTTAGTGCCTTCATTATTGCTTCCCTGCGAGTGAAGCATGTTCAATGTTATAGCTGCACTGCTTATGGTTAGCACAAGTCTTATTTTCTAAGACTGAATCTCTATTTGGTCCGCGTTATTATTCAAGAAAGTAAACAGATAAACTAGTAGAACAATTTACAATCGAATAAACAAATTGGTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="336" PGL_stop="7428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="336" e_stop="403"/>
            <exon e_start="1934" e_stop="2044"/>
            <exon e_start="2197" e_stop="2283"/>
            <exon e_start="3336" e_stop="3544"/>
            <exon e_start="6943" e_stop="7428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="336" e_stop="403" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="404" i_stop="1933" i_length="1530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1934" e_stop="2044" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2045" i_stop="2196" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2197" e_stop="2283" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.870" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2284" i_stop="3335" i_length="1052"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3336" e_stop="3544" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3545" i_stop="6942" i_length="3398"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="6943" e_stop="7428" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="336" stop="403"/>
              <exon start="1934" stop="2044"/>
              <exon start="2197" stop="2283"/>
              <exon start="3336" stop="3544"/>
              <exon start="6943" stop="7006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2255" stop="2283"/>
              <exon start="3336" stop="3544"/>
              <exon start="6943" stop="7428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTACTGACCAAAGATTACAGTTATGATCAGAAGTTCACCTTCTCTATTCCGAGCTCCAGTGGGATG : GGAATAACAGCTACTGGTGTGAAGAAAGATCAAATTTTTATTGGTGATATAAGTACTCAATATAAGCTTGGAAGTACAGTTGTTGATATCAAAGTTGATACCTATTCCAAT : GTCTCAACAAAAGTTACACTGGTTGATGTTTTCCGATCCACGAAACTGTCCTTAGGCTTCAACATACCTGATCACAAGTCTGGCAAG : CTCGATGTTCAGTACCTTCATCAGCATGCTGCTATCAATTCCAGTATTGGCTTAAATCCCTCCCCTCTCTTGGAGCTCTCGGTTGCTATTGGCAACAAGGATTTAGCCCTTGGTGGAGAAATAGGATTTAATACTGCTTCATCTTCTTTTACGAAGTGCAATGCTGGGCTTAGTTTTAACAAACCGGATTTTTCTGCTGCACTTATGTT : AACGGATAGGGGACAAGCTGTGAAGGCATCATATGTACACTTGGTAGATCCAACAAATGGAACTGAAGTAGGTGCAGAGATGATACACAGATTATCTACCTACGAGAACAGCTTCAGCATCGGGAGTGCTCACAAGGTCGACTCATTAACATCGTTGAAGACTAGATTTTCTGACAATGGGAAAGTTGCAATGCTTTACCAGCGGGAATGGAGGCCAAAGTCACTTGTTACTTTCTCAGCCGAGTACGACACAAAGGCAAAGAGTTCAGTACCCAAGTTAGGTCTTGCCCTTGCTTTGAAGCCATAAAAACTGCACTCTCTCTAATTCATCCAATTTTACTTTGATAGCTTGACTTTGTTAAAAATTCTTTCAAAAGGCCACAAGTGTTGTTGCCCTTTACATCTTACATCATTTTTTTCTTTTGGTTTGTTTGTTAAGATATCATATAATGATGATAAATTTGAAAGAATATGTTGTTACAGTAG</gDNA_template>
            <first_frame> I  Y  *  P  K  I  T  V  M  I  R  S  S  P  S  L  F  R  A  P  V  G  W :   E  *  Q  L  L  V  *  R  K  I  K  F  L  L  V  I  *  V  L  N  I  S  L  E  V  Q  L  L  I  S  K  L  I  P  I  P  M :   S  Q  Q  K  L  H  W  L  M  F  S  D  P  R  N  C  P  *  A  S  T  Y  L  I  T  S  L  A  S :   S  M  F  S  T  F  I  S  M  L  L  S  I  P  V  L  A  *  I  P  P  L  S  W  S  S  R  L  L  L  A  T  R  I  *  P  L  V  E  K  *  D  L  I  L  L  H  L  L  L  R  S  A  M  L  G  L  V  L  T  N  R  I  F  L  L  H  L  C   : *  R  I  G  D  K  L  *  R  H  H  M  Y  T  W  *  I  Q  Q  M  E  L  K  *  V  Q  R  *  Y  T  D  Y  L  P  T  R  T  A  S  A  S  G  V  L  T  R  S  T  H  *  H  R  *  R  L  D  F  L  T  M  G  K  L  Q  C  F  T  S  G  N  G  G  Q  S  H  L  L  L  S  Q  P  S  T  T  Q  R  Q  R  V  Q  Y  P  S  *  V  L  P  L  L  *  S  H  K  N  C  T  L  S  N  S  S  N  F  T  L  I  A  *  L  C  *  K  F  F  Q  K  A  T  S  V  V  A  L  Y  I  L  H  H  F  F  L  L  V  C  L  L  R  Y  H  I  M  M  I  N  L  K  E  Y  V  V  T  V  </first_frame>
            <second_frame>  S  T  D  Q  R  L  Q  L  *  S  E  V  H  L  L  Y  S  E  L  Q  W  D   : G  N  N  S  Y  W  C  E  E  R  S  N  F  Y  W  *  Y  K  Y  S  I  *  A  W  K  Y  S  C  *  Y  Q  S  *  Y  L  F  Q   : C  L  N  K  S  Y  T  G  *  C  F  P  I  H  E  T  V  L  R  L  Q  H  T  *  S  Q  V  W  Q   : A  R  C  S  V  P  S  S  A  C  C  Y  Q  F  Q  Y  W  L  K  S  L  P  S  L  G  A  L  G  C  Y  W  Q  Q  G  F  S  P  W  W  R  N  R  I  *  Y  C  F  I  F  F  Y  E  V  Q  C  W  A  *  F  *  Q  T  G  F  F  C  C  T  Y  V  :  N  G  *  G  T  S  C  E  G  I  I  C  T  L  G  R  S  N  K  W  N  *  S  R  C  R  D  D  T  Q  I  I  Y  L  R  E  Q  L  Q  H  R  E  C  S  Q  G  R  L  I  N  I  V  E  D  *  I  F  *  Q  W  E  S  C  N  A  L  P  A  G  M  E  A  K  V  T  C  Y  F  L  S  R  V  R  H  K  G  K  E  F  S  T  Q  V  R  S  C  P  C  F  E  A  I  K  T  A  L  S  L  I  H  P  I  L  L  *  *  L  D  F  V  K  N  S  F  K  R  P  Q  V  L  L  P  F  T  S  Y  I  I  F  F  F  W  F  V  C  *  D  I  I  *  *  *  *  I  *  K  N  M  L  L  Q  * </second_frame>
            <third_frame>   L  L  T  K  D  Y  S  Y  D  Q  K  F  T  F  S  I  P  S  S  S  G  M  :  G  I  T  A  T  G  V  K  K  D  Q  I  F  I  G  D  I  S  T  Q  Y  K  L  G  S  T  V  V  D  I  K  V  D  T  Y  S  N  :  V  S  T  K  V  T  L  V  D  V  F  R  S  T  K  L  S  L  G  F  N  I  P  D  H  K  S  G  K  :  L  D  V  Q  Y  L  H  Q  H  A  A  I  N  S  S  I  G  L  N  P  S  P  L  L  E  L  S  V  A  I  G  N  K  D  L  A  L  G  G  E  I  G  F  N  T  A  S  S  S  F  T  K  C  N  A  G  L  S  F  N  K  P  D  F  S  A  A  L  M  L :   T  D  R  G  Q  A  V  K  A  S  Y  V  H  L  V  D  P  T  N  G  T  E  V  G  A  E  M  I  H  R  L  S  T  Y  E  N  S  F  S  I  G  S  A  H  K  V  D  S  L  T  S  L  K  T  R  F  S  D  N  G  K  V  A  M  L  Y  Q  R  E  W  R  P  K  S  L  V  T  F  S  A  E  Y  D  T  K  A  K  S  S  V  P  K  L  G  L  A  L  A  L  K  P  *  K  L  H  S  L  *  F  I  Q  F  Y  F  D  S  L  T  L  L  K  I  L  S  K  G  H  K  C  C  C  P  L  H  L  T  S  F  F  S  F  G  L  F  V  K  I  S  Y  N  D  D  K  F  E  R  I  C  C  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="338" stop="403"/>
                    <exon start="1934" stop="2044"/>
                    <exon start="2197" stop="2283"/>
                    <exon start="3336" stop="3544"/>
                    <exon start="6943" stop="7249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTKDYSYDQKFTFSIPSSSGMGITATGVKKDQIFIGDISTQYKLGSTVVDIKVDTYSNVSTKVTLVDVFRSTKLSLGFNIPDHKSGKLDVQYLHQHAAINSSIGLNPSPLLELSVAIGNKDLALGGEIGFNTASSSFTKCNAGLSFNKPDFSAALMLTDRGQAVKASYVHLVDPTNGTEVGAEMIHRLSTYENSFSIGSAHKVDSLTSLKTRFSDNGKVAMLYQREWRPKSLVTFSAEYDTKAKSSVPKLGLALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7304" PGL_stop="7005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7304" e_stop="7005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7304" e_stop="7005" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7304" stop="7005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAACAAAGTCAAGCTATCAAAGTAAAATTGGATGAATTAGAGAGAGTGCAGTTTTTATGGCTTCAAAGCAAGGGCAAGACCTAACTTGGGTACTGAACTCTTTGCCTTTGTGTCGTACTCGGCTGAGAAAGTAACAAGTGACTTTGGCCTCCATTCCCGCTGGTAAAGCATTGCAACTTTCCCATTGTCAGAAAATCTAGTCTTCAACGATGTTAATGAGTCGACCTTGTGAGCACTCCCGATGCTGAAGCTGTTCTCGTAGGTAGATAATCTGTGTATCATCTCTGCACCTACTTCAG</gDNA_template>
            <first_frame> L  T  K  S  S  Y  Q  S  K  I  G  *  I  R  E  S  A  V  F  M  A  S  K  Q  G  Q  D  L  T  W  V  L  N  S  L  P  L  C  R  T  R  L  R  K  *  Q  V  T  L  A  S  I  P  A  G  K  A  L  Q  L  S  H  C  Q  K  I  *  S  S  T  M  L  M  S  R  P  C  E  H  S  R  C  *  S  C  S  R  R  *  I  I  C  V  S  S  L  H  L  L  Q </first_frame>
            <second_frame>  *  Q  S  Q  A  I  K  V  K  L  D  E  L  E  R  V  Q  F  L  W  L  Q  S  K  G  K  T  *  L  G  Y  *  T  L  C  L  C  V  V  L  G  *  E  S  N  K  *  L  W  P  P  F  P  L  V  K  H  C  N  F  P  I  V  R  K  S  S  L  Q  R  C  *  *  V  D  L  V  S  T  P  D  A  E  A  V  L  V  G  R  *  S  V  Y  H  L  C  T  Y  F   </second_frame>
            <third_frame>   N  K  V  K  L  S  K  *  N  W  M  N  *  R  E  C  S  F  Y  G  F  K  A  R  A  R  P  N  L  G  T  E  L  F  A  F  V  S  Y  S  A  E  K  V  T  S  D  F  G  L  H  S  R  W  *  S  I  A  T  F  P  L  S  E  N  L  V  F  N  D  V  N  E  S  T  L  *  A  L  P  M  L  K  L  F  S  *  V  D  N  L  C  I  I  S  A  P  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0085O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9628" PGL_stop="10421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9628" e_stop="10421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9628" e_stop="10421" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9628" stop="10421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9629" stop="10192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTGACATACACTTATTCCGATGTTGATCTTGCTGCCAAAAGAATCGCCCTAGGGCTCCACAAACTCGGTATCGAACAAAGAGATATCATCATGATCTTACTTCCGAACTCGCCCGAATTCGTGTTCTCGTTCCTCGGGGCATCGTTCCGAGGCGCGATAAGCACGACCGCGAACCCGTTCTACACTCCGTCCGAAATTACGAAGCAAGCGAAAGCATCGAACGCAAAGCTCATCGTAACGCAATCGTGCTACGTCGATAAAATCAAGCGTTACGCCGAGGAAAATAGAGTTAAAATCGTGTGCGTGGACGATTCCTTGCCGTTGCCCGATGGATGTCTTAGTTTCGCGGAGTTATTATTAACTACCACTCATCCATCGGACGAAAACAATTCTAATGATGACAACATCATTTTATCTGATAGTGTAAAAATTCTTCCTGATGATGTGGTGGCATTACCTTATTCGTCCGGTACGACGGGGTTACCAAAAGGAGTGATGCTTACACATAAAGGACTTGTTACAAGTGTGGCACAACAAGTTGATGGTGAAAACCCTAATCTTTATTTCCATAGTGAAGATGTGATCATGTGTGTTTTGCCATTGTTTCATATTTATTCTCTCAATTCAATTTTGCTTTGTGGATTGAGAGTTGGTGCAACTATTTTGATAATGCAAAAATTTGAGATAAAAGGTTTAATGGAATTAGTGGAGAAATATAAAGTAACAATTGCACCATTTGTGCCACCTATTGTATTGGCTATTGCAAAAAGTCCATTGGTAGATAAATATGAT</gDNA_template>
            <first_frame> V  *  H  T  L  I  P  M  L  I  L  L  P  K  E  S  P  *  G  S  T  N  S  V  S  N  K  E  I  S  S  *  S  Y  F  R  T  R  P  N  S  C  S  R  S  S  G  H  R  S  E  A  R  *  A  R  P  R  T  R  S  T  L  R  P  K  L  R  S  K  R  K  H  R  T  Q  S  S  S  *  R  N  R  A  T  S  I  K  S  S  V  T  P  R  K  I  E  L  K  S  C  A  W  T  I  P  C  R  C  P  M  D  V  L  V  S  R  S  Y  Y  *  L  P  L  I  H  R  T  K  T  I  L  M  M  T  T  S  F  Y  L  I  V  *  K  F  F  L  M  M  W  W  H  Y  L  I  R  P  V  R  R  G  Y  Q  K  E  *  C  L  H  I  K  D  L  L  Q  V  W  H  N  K  L  M  V  K  T  L  I  F  I  S  I  V  K  M  *  S  C  V  F  C  H  C  F  I  F  I  L  S  I  Q  F  C  F  V  D  *  E  L  V  Q  L  F  *  *  C  K  N  L  R  *  K  V  *  W  N  *  W  R  N  I  K  *  Q  L  H  H  L  C  H  L  L  Y  W  L  L  Q  K  V  H  W  *  I  N  M   </first_frame>
            <second_frame>  C  D  I  H  L  F  R  C  *  S  C  C  Q  K  N  R  P  R  A  P  Q  T  R  Y  R  T  K  R  Y  H  H  D  L  T  S  E  L  A  R  I  R  V  L  V  P  R  G  I  V  P  R  R  D  K  H  D  R  E  P  V  L  H  S  V  R  N  Y  E  A  S  E  S  I  E  R  K  A  H  R  N  A  I  V  L  R  R  *  N  Q  A  L  R  R  G  K  *  S  *  N  R  V  R  G  R  F  L  A  V  A  R  W  M  S  *  F  R  G  V  I  I  N  Y  H  S  S  I  G  R  K  Q  F  *  *  *  Q  H  H  F  I  *  *  C  K  N  S  S  *  *  C  G  G  I  T  L  F  V  R  Y  D  G  V  T  K  R  S  D  A  Y  T  *  R  T  C  Y  K  C  G  T  T  S  *  W  *  K  P  *  S  L  F  P  *  *  R  C  D  H  V  C  F  A  I  V  S  Y  L  F  S  Q  F  N  F  A  L  W  I  E  S  W  C  N  Y  F  D  N  A  K  I  *  D  K  R  F  N  G  I  S  G  E  I  *  S  N  N  C  T  I  C  A  T  Y  C  I  G  Y  C  K  K  S  I  G  R  *  I  *  </second_frame>
            <third_frame>   V  T  Y  T  Y  S  D  V  D  L  A  A  K  R  I  A  L  G  L  H  K  L  G  I  E  Q  R  D  I  I  M  I  L  L  P  N  S  P  E  F  V  F  S  F  L  G  A  S  F  R  G  A  I  S  T  T  A  N  P  F  Y  T  P  S  E  I  T  K  Q  A  K  A  S  N  A  K  L  I  V  T  Q  S  C  Y  V  D  K  I  K  R  Y  A  E  E  N  R  V  K  I  V  C  V  D  D  S  L  P  L  P  D  G  C  L  S  F  A  E  L  L  L  T  T  T  H  P  S  D  E  N  N  S  N  D  D  N  I  I  L  S  D  S  V  K  I  L  P  D  D  V  V  A  L  P  Y  S  S  G  T  T  G  L  P  K  G  V  M  L  T  H  K  G  L  V  T  S  V  A  Q  Q  V  D  G  E  N  P  N  L  Y  F  H  S  E  D  V  I  M  C  V  L  P  L  F  H  I  Y  S  L  N  S  I  L  L  C  G  L  R  V  G  A  T  I  L  I  M  Q  K  F  E  I  K  G  L  M  E  L  V  E  K  Y  K  V  T  I  A  P  F  V  P  P  I  V  L  A  I  A  K  S  P  L  V  D  K  Y  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9630" stop="10421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTYTYSDVDLAAKRIALGLHKLGIEQRDIIMILLPNSPEFVFSFLGASFRGAISTTANPFYTPSEITKQAKASNAKLIVTQSCYVDKIKRYAEENRVKIVCVDDSLPLPDGCLSFAELLLTTTHPSDENNSNDDNIILSDSVKILPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVIMCVLPLFHIYSLNSILLCGLRVGATILIMQKFEIKGLMELVEKYKVTIAPFVPPIVLAIAKSPLVDKYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14869" PGL_stop="17461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14869" e_stop="14926"/>
            <exon e_start="15285" e_stop="15467"/>
            <exon e_start="15558" e_stop="15655"/>
            <exon e_start="15736" e_stop="15793"/>
            <exon e_start="16565" e_stop="16644"/>
            <exon e_start="16751" e_stop="16853"/>
            <exon e_start="17049" e_stop="17461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14869" e_stop="14926" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15285" e_stop="15467" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15655" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15736" e_stop="15793" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15794" i_stop="16564" i_length="771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16565" e_stop="16644" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16645" i_stop="16750" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16751" e_stop="16853" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.964">
            <gDNA_intron_boundary i_start="16854" i_stop="17048" i_length="195"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="17049" e_stop="17461" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14869" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14880" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14882" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14886" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14888" stop="14926"/>
              <exon start="15285" stop="15448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14891" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14893" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14902" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14903" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14905" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14906" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15289" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15292" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15314" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15317" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15329" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15334" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15644" stop="15655"/>
              <exon start="15736" stop="15793"/>
              <exon start="16565" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16606" stop="16644"/>
              <exon start="16751" stop="16853"/>
              <exon start="17049" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16826" stop="16853"/>
              <exon start="17049" stop="17424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17094" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17107" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17111" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17111" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17111" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17111" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17111" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17136" stop="17451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTTCAGGGAAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG : ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG : GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG : GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAG : ATCTTCAACGGTGTCTTCTTGAAAGTTAACAAGGCCACCGTGAACATGCTGCATAGGGTTGAGCCATATGTCACATACGG : CTATCCCAACTTAAAGAGTATCAAGGAATTGATCTACAAACGAGGTTATGGAAAGGTAGACAAGCAGAGAATTGCTTTGACCGACAATGCTGTAGTTGAGCAG : GTGTTGGGCAAACATGGAATCATTTGCATCGAAGATCTCGTTCACGAGATCATCACTGTGGGACCACACTTCAAGGAGGCTAACAACTTCCTATGGCCTTTCCAACTCAAGGCACCTCTTGGTGGACTAAAAAAGAAGAGAAACCACTACGTTGAAGGCGGTGATGCTGGAAATCGCGAGAATTTCATCAATGAGCTCATCAGGAGGATGAACTAAAACATCTCTCACTAAGCAACAGTTTTGTTTCTTTAGAAGTTTGTTTTTGGTGTTTTGAACCGTTTGTAATATTGAACTAGACACATTTCTGCCAGAGGTTAAAAATTGGTCTTTGGATTAAGTATGCTAATTGCCTCTGGTTTTTTCATTGTTCAATATTAAAATGGAAGTGTGCTTTGTTCAATTTATATTATGGT</gDNA_template>
            <first_frame> Q  V  Q  G  R  K  K  T  A  E  K  R  R  R  R  R  N  P  *   : D  *  R  Y  G  *  G  R  C  S  S  S  R  V  G  I  E  E  A  E  E  E  *  G  V  G  S  C  K  E  A  R  A  C  S  C  Q  E  K  E  C  *  E  S  *  T  Y  L  Q  Q  S  *  T  V  C  *  G  V  L  R  A   : G  E  G  V  D  P  F  E  A  R  G  T  I  E  G  R  I  L  C  *  S  R  G  Q  V  A  L  H  H  Q  N  P  W  :  D  *  R  N  A  S  S  D  *  K  D  S  A  A  S  Q  I  A  T   : D  L  Q  R  C  L  L  E  S  *  Q  G  H  R  E  H  A  A  *  G  *  A  I  C  H  I  R  :  L  S  Q  L  K  E  Y  Q  G  I  D  L  Q  T  R  L  W  K  G  R  Q  A  E  N  C  F  D  R  Q  C  C  S  *  A   : G  V  G  Q  T  W  N  H  L  H  R  R  S  R  S  R  D  H  H  C  G  T  T  L  Q  G  G  *  Q  L  P  M  A  F  P  T  Q  G  T  S  W  W  T  K  K  E  E  K  P  L  R  *  R  R  *  C  W  K  S  R  E  F  H  Q  *  A  H  Q  E  D  E  L  K  H  L  S  L  S  N  S  F  V  S  L  E  V  C  F  W  C  F  E  P  F  V  I  L  N  *  T  H  F  C  Q  R  L  K  I  G  L  W  I  K  Y  A  N  C  L  W  F  F  H  C  S  I  L  K  W  K  C  A  L  F  N  L  Y  Y  G </first_frame>
            <second_frame>  K  F  R  E  G  R  R  L  Q  R  R  D  A  A  A  E  I  H  R  :  I  R  D  M  G  E  G  G  V  V  V  P  E  S  V  L  K  K  Q  K  R  N  E  E  W  A  L  V  K  K  Q  E  L  A  V  A  K  K  K  S  V  E  N  R  K  L  I  Y  N  R  A  K  Q  Y  A  K  E  Y  S  E  Q  :  E  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  :  I  F  N  G  V  F  L  K  V  N  K  A  T  V  N  M  L  H  R  V  E  P  Y  V  T  Y  G :   Y  P  N  L  K  S  I  K  E  L  I  Y  K  R  G  Y  G  K  V  D  K  Q  R  I  A  L  T  D  N  A  V  V  E  Q  :  V  L  G  K  H  G  I  I  C  I  E  D  L  V  H  E  I  I  T  V  G  P  H  F  K  E  A  N  N  F  L  W  P  F  Q  L  K  A  P  L  G  G  L  K  K  K  R  N  H  Y  V  E  G  G  D  A  G  N  R  E  N  F  I  N  E  L  I  R  R  M  N  *  N  I  S  H  *  A  T  V  L  F  L  *  K  F  V  F  G  V  L  N  R  L  *  Y  *  T  R  H  I  S  A  R  G  *  K  L  V  F  G  L  S  M  L  I  A  S  G  F  F  I  V  Q  Y  *  N  G  S  V  L  C  S  I  Y  I  M   </second_frame>
            <third_frame>   S  S  G  K  E  E  D  C  R  E  E  T  P  P  Q  K  S  I  G :   L  E  I  W  V  R  E  V  *  *  F  Q  S  R  Y  *  R  S  R  R  G  M  R  S  G  L  L  *  R  S  K  S  L  Q  L  P  R  K  R  V  L  R  I  V  N  L  S  T  T  E  L  N  S  M  L  R  S  T  Q  S  R :   R  R  S  *  S  V  *  S  A  R  H  D  *  R  E  D  S  M  L  I  Q  R  P  S  C  S  S  S  S  E  S  V   : G  L  T  Q  C  L  L  R  L  K  R  F  C  S  F  S  D  C  D  R :   S  S  T  V  S  S  *  K  L  T  R  P  P  *  T  C  C  I  G  L  S  H  M  S  H  T   : A  I  P  T  *  R  V  S  R  N  *  S  T  N  E  V  M  E  R  *  T  S  R  E  L  L  *  P  T  M  L  *  L  S  R :   C  W  A  N  M  E  S  F  A  S  K  I  S  F  T  R  S  S  L  W  D  H  T  S  R  R  L  T  T  S  Y  G  L  S  N  S  R  H  L  L  V  D  *  K  R  R  E  T  T  T  L  K  A  V  M  L  E  I  A  R  I  S  S  M  S  S  S  G  G  *  T  K  T  S  L  T  K  Q  Q  F  C  F  F  R  S  L  F  L  V  F  *  T  V  C  N  I  E  L  D  T  F  L  P  E  V  K  N  W  S  L  D  *  V  C  *  L  P  L  V  F  S  L  F  N  I  K  M  E  V  C  F  V  Q  F  I  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14870" stop="14926"/>
                    <exon start="15285" stop="15467"/>
                    <exon start="15558" stop="15655"/>
                    <exon start="15736" stop="15793"/>
                    <exon start="16565" stop="16644"/>
                    <exon start="16751" stop="16853"/>
                    <exon start="17049" stop="17264"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFREGRRLQRRDAAAEIHRIRDMGEGGVVVPESVLKKQKRNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSIKELIYKRGYGKVDKQRIALTDNAVVEQVLGKHGIICIEDLVHEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14880" e_stop="14926"/>
            <exon e_start="15285" e_stop="15467"/>
            <exon e_start="15558" e_stop="15655"/>
            <exon e_start="15736" e_stop="16216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14880" e_stop="14926" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14927" i_stop="15284" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15285" e_stop="15467" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15468" i_stop="15557" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15655" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15656" i_stop="15735" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="15736" e_stop="16216" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14880" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14888" stop="14926"/>
              <exon start="15285" stop="15448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14904" stop="14926"/>
              <exon start="15285" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="16101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15314" stop="15467"/>
              <exon start="15558" stop="15655"/>
              <exon start="15736" stop="15781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15943" stop="16216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGAAGACTGCAGAGAAGAGACGCCGCCGCAGAAATCCATAGG : ATTAGAGATATGGGTGAGGGAGGTGTAGTAGTTCCAGAGTCGGTATTGAAGAAGCAGAAGAGGAATGAGGAGTGGGCTCTTGTAAAGAAGCAAGAGCTTGCAGTTGCCAAGAAAAAGAGTGTTGAGAATCGTAAACTTATCTACAACAGAGCTAAACAGTATGCTAAGGAGTACTCAGAGCAG : GAGAAGGAGTTGATCCGTTTGAAGCGCGAGGCACGATTGAAGGGAGGATTCTATGTTGATCCAGAGGCCAAGTTGCTCTTCATCATCAGAATCCGTGG : GATTAACGCAATGCCTCCTCAGACTAAAAAGATTCTGCAGCTTCTCAGATTGCGACAGGTGAGTTTTTGATGTTTCCTGTTTAATATGTATATAAATATGTAAGAAGATGCTGGTTCTAGTTTTAACCGTCACAAAAATATGATGATCAAATTTATGTATTATTGGATTATGTTTTCCTTTCTCTAGTTTCCTTGCCGCTCTGTAACTTTAAGTGATTCAATCTGCTCAACATGGCTGCAGATTGTACCATTATTAGGTCAGTTACATGTTGTTTTCAATCCAAAAGCTTTAGAATAGAGCATTTAAGCTTCCAATTTCATCTTTTACATCCATGCCAAGATAACCTTTGACATTCAACTTTGATGGAGGAGTTGATTCATTCATTTCATTTTCTAACATCTAGGCTTTACATTATTTAGTCGATTCGTTCATTACACTTTCTTATCATGTAACTTTGCACATAGTTTTATCTTTTACCCT</gDNA_template>
            <first_frame> K  E  E  D  C  R  E  E  T  P  P  Q  K  S  I  G :   L  E  I  W  V  R  E  V  *  *  F  Q  S  R  Y  *  R  S  R  R  G  M  R  S  G  L  L  *  R  S  K  S  L  Q  L  P  R  K  R  V  L  R  I  V  N  L  S  T  T  E  L  N  S  M  L  R  S  T  Q  S  R :   R  R  S  *  S  V  *  S  A  R  H  D  *  R  E  D  S  M  L  I  Q  R  P  S  C  S  S  S  S  E  S  V   : G  L  T  Q  C  L  L  R  L  K  R  F  C  S  F  S  D  C  D  R  *  V  F  D  V  S  C  L  I  C  I  *  I  C  K  K  M  L  V  L  V  L  T  V  T  K  I  *  *  S  N  L  C  I  I  G  L  C  F  P  F  S  S  F  L  A  A  L  *  L  *  V  I  Q  S  A  Q  H  G  C  R  L  Y  H  Y  *  V  S  Y  M  L  F  S  I  Q  K  L  *  N  R  A  F  K  L  P  I  S  S  F  T  S  M  P  R  *  P  L  T  F  N  F  D  G  G  V  D  S  F  I  S  F  S  N  I  *  A  L  H  Y  L  V  D  S  F  I  T  L  S  Y  H  V  T  L  H  I  V  L  S  F  T   </first_frame>
            <second_frame>  R  K  K  T  A  E  K  R  R  R  R  R  N  P  *   : D  *  R  Y  G  *  G  R  C  S  S  S  R  V  G  I  E  E  A  E  E  E  *  G  V  G  S  C  K  E  A  R  A  C  S  C  Q  E  K  E  C  *  E  S  *  T  Y  L  Q  Q  S  *  T  V  C  *  G  V  L  R  A   : G  E  G  V  D  P  F  E  A  R  G  T  I  E  G  R  I  L  C  *  S  R  G  Q  V  A  L  H  H  Q  N  P  W  :  D  *  R  N  A  S  S  D  *  K  D  S  A  A  S  Q  I  A  T  G  E  F  L  M  F  P  V  *  Y  V  Y  K  Y  V  R  R  C  W  F  *  F  *  P  S  Q  K  Y  D  D  Q  I  Y  V  L  L  D  Y  V  F  L  S  L  V  S  L  P  L  C  N  F  K  *  F  N  L  L  N  M  A  A  D  C  T  I  I  R  S  V  T  C  C  F  Q  S  K  S  F  R  I  E  H  L  S  F  Q  F  H  L  L  H  P  C  Q  D  N  L  *  H  S  T  L  M  E  E  L  I  H  S  F  H  F  L  T  S  R  L  Y  I  I  *  S  I  R  S  L  H  F  L  I  M  *  L  C  T  *  F  Y  L  L  P  </second_frame>
            <third_frame>   G  R  R  L  Q  R  R  D  A  A  A  E  I  H  R  :  I  R  D  M  G  E  G  G  V  V  V  P  E  S  V  L  K  K  Q  K  R  N  E  E  W  A  L  V  K  K  Q  E  L  A  V  A  K  K  K  S  V  E  N  R  K  L  I  Y  N  R  A  K  Q  Y  A  K  E  Y  S  E  Q  :  E  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  V  S  F  *  C  F  L  F  N  M  Y  I  N  M  *  E  D  A  G  S  S  F  N  R  H  K  N  M  M  I  K  F  M  Y  Y  W  I  M  F  S  F  L  *  F  P  C  R  S  V  T  L  S  D  S  I  C  S  T  W  L  Q  I  V  P  L  L  G  Q  L  H  V  V  F  N  P  K  A  L  E  *  S  I  *  A  S  N  F  I  F  Y  I  H  A  K  I  T  F  D  I  Q  L  *  W  R  S  *  F  I  H  F  I  F  *  H  L  G  F  T  L  F  S  R  F  V  H  Y  T  F  L  S  C  N  F  A  H  S  F  I  F  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14882" stop="14926"/>
                    <exon start="15285" stop="15467"/>
                    <exon start="15558" stop="15655"/>
                    <exon start="15736" stop="15805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRLQRRDAAAEIHRIRDMGEGGVVVPESVLKKQKRNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQVSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58753" PGL_stop="58295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58753" e_stop="58295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="58753" e_stop="58295" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58753" stop="58295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATGCCTTGAACTTTGATAAAAGAATCATATATATCCCTAAATAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTCCATTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGGGATATATCAGACCCTTTTCTCTTACTTTGTTCCATTCATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  *  F  K  F  F  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  A  L  N  F  D  K  R  I  I  Y  I  P  K  *  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  H  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  L  T  L  F  H  S  * </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  N  F  F  S  L  N  *  G  M  K  E  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  M  P  *  T  L  I  K  E  S  Y  I  S  L  N  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  I  S  I  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  I  Y  Q  L  *  M  T  K  L  R  D  I  S  D  P  F  L  L  L  C  S  I  H   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  C  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  I  Y  Q  T  L  F  S  Y  F  V  P  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0085O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60094" PGL_stop="59310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60094" e_stop="59310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="60094" e_stop="59310" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60094" stop="59310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTCAGTCTAGCAGATTGGGCATTACACTGCCATAGGAAAAATACTACCATGGAACTTATGGATCCACATATTAAAGGGGAGATTATAGAAGAATGTCTGAAGCAATTCATCGATACAGCAGTGAGTTGTTTGTCTGATCACGGAACTGATCGTCCTTCAATGGGTTCAGTGCTGTGGAATCTTGAGTACTGCCTTCAGTTGCAAAGTGATCCCGATGAACCAAAAATGGTGGCGGAACAGAAAGCTAATGATGCCTATGCTATGCATAAAGAGTTGTTAACGGTTGCAGAAGAAGGTAAGGAGTCAGCAGAGGACAGCACGGACACTGTCTTCTCACAAATTGTAAATCCACAAGGTAGATAGTTGCTTAGTTCTACCGTTGTGCTTTTGTTTTTGTTTAGATGTTTCCTGTCAATATTAGCAATTATGAAGAGAGTTTATAATTGACCATGAAGCTTGCTTAGCTTGTACAACACCTTCATTTCCAACAGGTAGGTTGGGTGTTCGAGTCATGTGGATGGTACATGGAAGTACTAATAATCCTCCTAGACTGGGGGTGGAAAAAAAATACAGTTGTAGCTTGTACCTCTGTTATTCTTAGTGCCTTCATTATTGCTTCCCTGCGAGTGAAGCATGTTCAATGTTATAGCTGCACTGCTTATGGTTAGCACAAGTCTTATTTTCTGAGACTGAATCTCTATTTGGTCCGCGTTATTATTCAAGAAAGTAAACAGATAAACTAGTAGAACAATTTACAATCGAATAAACAAATTGGTTATAT</gDNA_template>
            <first_frame> T  S  Q  S  S  R  L  G  I  T  L  P  *  E  K  Y  Y  H  G  T  Y  G  S  T  Y  *  R  G  D  Y  R  R  M  S  E  A  I  H  R  Y  S  S  E  L  F  V  *  S  R  N  *  S  S  F  N  G  F  S  A  V  E  S  *  V  L  P  S  V  A  K  *  S  R  *  T  K  N  G  G  G  T  E  S  *  *  C  L  C  Y  A  *  R  V  V  N  G  C  R  R  R  *  G  V  S  R  G  Q  H  G  H  C  L  L  T  N  C  K  S  T  R  *  I  V  A  *  F  Y  R  C  A  F  V  F  V  *  M  F  P  V  N  I  S  N  Y  E  E  S  L  *  L  T  M  K  L  A  *  L  V  Q  H  L  H  F  Q  Q  V  G  W  V  F  E  S  C  G  W  Y  M  E  V  L  I  I  L  L  D  W  G  W  K  K  N  T  V  V  A  C  T  S  V  I  L  S  A  F  I  I  A  S  L  R  V  K  H  V  Q  C  Y  S  C  T  A  Y  G  *  H  K  S  Y  F  L  R  L  N  L  Y  L  V  R  V  I  I  Q  E  S  K  Q  I  N  *  *  N  N  L  Q  S  N  K  Q  I  G  Y   </first_frame>
            <second_frame>  Q  V  S  L  A  D  W  A  L  H  C  H  R  K  N  T  T  M  E  L  M  D  P  H  I  K  G  E  I  I  E  E  C  L  K  Q  F  I  D  T  A  V  S  C  L  S  D  H  G  T  D  R  P  S  M  G  S  V  L  W  N  L  E  Y  C  L  Q  L  Q  S  D  P  D  E  P  K  M  V  A  E  Q  K  A  N  D  A  Y  A  M  H  K  E  L  L  T  V  A  E  E  G  K  E  S  A  E  D  S  T  D  T  V  F  S  Q  I  V  N  P  Q  G  R  *  L  L  S  S  T  V  V  L  L  F  L  F  R  C  F  L  S  I  L  A  I  M  K  R  V  Y  N  *  P  *  S  L  L  S  L  Y  N  T  F  I  S  N  R  *  V  G  C  S  S  H  V  D  G  T  W  K  Y  *  *  S  S  *  T  G  G  G  K  K  I  Q  L  *  L  V  P  L  L  F  L  V  P  S  L  L  L  P  C  E  *  S  M  F  N  V  I  A  A  L  L  M  V  S  T  S  L  I  F  *  D  *  I  S  I  W  S  A  L  L  F  K  K  V  N  R  *  T  S  R  T  I  Y  N  R  I  N  K  L  V  I  </second_frame>
            <third_frame>   K  S  V  *  Q  I  G  H  Y  T  A  I  G  K  I  L  P  W  N  L  W  I  H  I  L  K  G  R  L  *  K  N  V  *  S  N  S  S  I  Q  Q  *  V  V  C  L  I  T  E  L  I  V  L  Q  W  V  Q  C  C  G  I  L  S  T  A  F  S  C  K  V  I  P  M  N  Q  K  W  W  R  N  R  K  L  M  M  P  M  L  C  I  K  S  C  *  R  L  Q  K  K  V  R  S  Q  Q  R  T  A  R  T  L  S  S  H  K  L  *  I  H  K  V  D  S  C  L  V  L  P  L  C  F  C  F  C  L  D  V  S  C  Q  Y  *  Q  L  *  R  E  F  I  I  D  H  E  A  C  L  A  C  T  T  P  S  F  P  T  G  R  L  G  V  R  V  M  W  M  V  H  G  S  T  N  N  P  P  R  L  G  V  E  K  K  Y  S  C  S  L  Y  L  C  Y  S  *  C  L  H  Y  C  F  P  A  S  E  A  C  S  M  L  *  L  H  C  L  W  L  A  Q  V  L  F  S  E  T  E  S  L  F  G  P  R  Y  Y  S  R  K  *  T  D  K  L  V  E  Q  F  T  I  E  *  T  N  W  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60093" stop="59728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVSLADWALHCHRKNTTMELMDPHIKGEIIEECLKQFIDTAVSCLSDHGTDRPSMGSVLWNLEYCLQLQSDPDEPKMVAEQKANDAYAMHKELLTVAEEGKESAEDSTDTVFSQIVNPQGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0085O20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59626" stop="59423"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQHLHFQQVGWVFESCGWYMEVLIILLDWGWKKNTVVACTSVILSAFIIASLRVKHVQCYSCTAYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 204 chains have been computed
$ 
$ memory statistics:
$ 78392 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 2010 bytes was the average size of a spliced alignment
$ 12104 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2017 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 249 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:22:57
-->
