<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:37:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350377" ref_strand="+" ref_description="SGN-E350377 [cTOS-5-M20]">
      <seq>taatttaggcatggttactttggattgaaggcaacgcgttggaactgatagacgaatgtatcaaagaatccttttcagaatctcaagtgttgagatgcatccaggttggtttgttatgcgtccaaaaactccccgaggataggcctacaatggcatcagtagttttctggttaggcaatgaaggtctggttcttcctcaaccaaagcgacctggttttttcattgagaggaattcaatggattcaactaaatcatcaactgatgaaggatatttaagtaacaacgtatcgataacaatcctggagccaagatagatataagttccaataattggaacttttgaaatgtattcactttgtcctgttttgtcaaacactgatagtgtatatgtgactatatatgaggtgaattgacatgtattctttctgtacaataagagatgtaatgaatttgcctattctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="14298" stop="15362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14598" g_stop="15062" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E350377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14598" e_stop="15062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</genome_strand>
        <mrna_strand>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343406" ref_strand="+" ref_description="SGN-E343406 [cTOF-19-M4]">
      <seq>acaacacatacacacacaacatctctttagtgatcgcgagaaatggaagctccttatggatttgaagatcactttcccttcaatgatggagagattaggcgcggaaggattcatgagggagctttgcaatggattttgtttacttatggatgtgagtatagggctaataacatatgaaagtttgaagagaaacactatgaatcttggtttaaatgatttaagagatgatgagttgatttacgtgttggctgaaggagatttggatggtgatggagcacttaatcaaatggaattttgtattctcatgtttagattgagtcctggtttaatggatggatctaagcaatacatggatgatgtggggcttattcatttccaaccctaactaggttttttattaattccttaatttgtgtgttttattgatgtaacttgtattaatatcatgagagatatgatgatgatgatgatgaagatcttatgccaaataaataattctccatgtatatctatttgtgtgtgttgatttgaaggagtgatgattattaattatcaaactacaatatcaggcatttccaacttcataatgtttcatcttttgtacgtttgttcagtaaaataatgaaggatatgccttattaatgggggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="18178" stop="19434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18478" g_stop="19137" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E343406" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18478" e_stop="19137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCA-TTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGG</genome_strand>
        <mrna_strand>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGCTCCTTATGGATTTGAAGATCACTTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACGTGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344250" ref_strand="+" ref_description="SGN-E344250 [cTOF-16-C9]">
      <seq>atctctttagtgatcgcgagaaatggaagatccttatggatttgaagatcatttcccttcaatgatggagagattaggcgcggaaggattcatgagggagctttgcaatggattttgtttacttatggatgtgagtatagggctaataacatatgaaagtttgaagagaaacactatgaatcttggtttaaatgatttaagagatgatgagttgatttacatgttggctgaaggagatttggatggtgatggagcacttaatcaaatggaattttgtattctcatgtttagattgagtcctggtttaatggatggatctaagcaatacatggatgatgtggggcttattcatttccaaccctaactaggttttttattaattccttaatttgtgtgttttattgatgtaacttgtattaatatcatgagagatatgatgatgatgatgatgaagatcttatgccaaataaataattctccatgtatatctatttgtgtgtgttgatttgaaggagtgatgattattaattatcaaactacaatatcaggcatttccaacttcataatgtttcatcttttgtacgtttgttcagtaaaataatgaaggatatgccttattaatggggaatagatgaaagggtttgttatatgttgactaggtcgattagaaagtgtaaaaacatctcgattctttttaaatattgtattttgggatggatgactaatttggggcttatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="18198" stop="19540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18498" g_stop="19240" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E344250" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18498" e_stop="19240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGTCTAGGTCGATTAGAAGGTGTAAAAACATCTCGATTCTTTTTAAATTATTTTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</genome_strand>
        <mrna_strand>ATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGACTAGGTCGATTAGAAAGTGTAAAAACATCTCGATTCTTTTTAAA-TATTGTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348329" ref_strand="+" ref_description="SGN-E348329 [cTOF-27-H14]">
      <seq>tttcccttcaatgatggagagattaggcgccggaaggattcatgagggagctttgcaatggattttgtttacttatggatgtgagtatagggctaataacatatgaaagtttgaagagaaacactatgaatcttggtttaaatgatttaagagatgatgagttgatttacatgttggctgaaggagatttggatggtgatggagcacttaatcaaatggaattttgtattctcatgtttagattgagtcctggtttaatggatggatctaagcaatacatggatgatgtggggcttattcatttccaaccctaactaggttttttattaattccttaatttgtgtgttttattgatgtaacttgtattaatatcatgagagatatgatgatgatgatgatggaagatcttatgccaaataaataattctccatgtatatctatttgtggtgtgttgatttgaaggagtgatgattattaattatcaaactacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="18249" stop="19341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18549" g_stop="19045" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E348329" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18549" e_stop="19045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTTCAATGATGGAGAGATTAGGCG-CGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGAT-GAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGT-GTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAG</genome_strand>
        <mrna_strand>TTTCCCTTCAATGATGGAGAGATTAGGCGCCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348843" ref_strand="+" ref_description="SGN-E348843 [cTOF-29-D2]">
      <seq>ccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctacgaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtgtgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgcttctgaggatcgaaaagattcataatgaaggtggacgaggtcttcccttggtttgcacttgtattgaccagcttcctccaagaaccagtaggccctttgtgacatctggagtcattttatgtatatgaactgttgtagctcgtctctcgcaacatcaacttattatggnttcttcttgatgattgtatctactatgggtatcatcttcacaatattgntacttgattgcctttggatacttgctgtgcaatctaaaacttttttatgacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24851" stop="20969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="24427" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24426" i_stop="24178" i_length="249">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24177" g_stop="23844" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="459" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21523" g_stop="21269" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="713" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="726"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E348843" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="24427"/>
          <exon e_start="24177" e_stop="23844"/>
          <exon e_start="21523" e_stop="21269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAGGTATGCCGATTGTTACTATTTTTCATTTAAGCATTTTTCTTTATTTGGATTATCAAATGTTGTTCTTTATGCTTATTTCTTCATTATTAAGTATTCTATTATGTTTCTGATGATCTTCATGTATAATAGCAATCAGTTAATGTTGTGCTTCCTTGATAGTTTTCTCCTTTAACAGTTACTCTGCTCCTAAACGAACAATCAGGTTAGAGAGGACTGATTTCTTGTTAATTTTCTGTTTGATATTGGACATTGTACTATAAAGTTAAGTTCAACTACGTAGGAGTAATATTAATTGAGAAGTTGAAAGGAAGTAAGTGGGGATACTGAATTCGAAATTCAGCATTCCTCCTTCCTCCACTCTTAACTGAAAAAAAAGTGAGGTCTTTGCCTCCCCGACCATTGCTAGTTCCTCCATCCTCATAAAATTTTCTAGTACATTTTCATCCCCATCTTTTAATAGGTTTAGTTTATGTTTCTGTTCCTGTTATTTGTCTTGATTGACAAAAATAACCGGTTCTATTTTGGAATGTTGCAGGCTGTTTTTGTTTAAATATATAAGGATGAGCTTAATGCTTTTATGATTCATAGACTTGATTTCCGTAATAATTTGGGGCAAAATGTAATGTGGTCATGATTGTTTTCTCTGTTATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCATCAGATATTTAGTTTACTTGCGCAGAAACACCGACAATTCTGATTGGAAGCAGGTTTCAGTTCTTTTAAGATGCAGTACTGATTCAGGAAGACGTGGTTTCTTTTGGTTGATTCCCTTTCTGGTTTTAGTCAAGGAATTAATGAAAATAAGATGAATGGTTTTGCATATCCTTGATGCCAGTAATGAAAACATCTAACTTCATCAGAAAAAAGAAAGAAATGAAATGAATGCAACCAATATATGTCATATTTACTCACATTTTATGTAATTTCAATTTCTTCAAGTGATGGCAAGTGTGGAAGTTGCACTAGCCCTTTTCCAAGGATACTCACTTCTTTAACCATTTATGATGCAGTTGCGTCGATTTAAGAAATAAGTTTGTGTCACATTGAAAGTAATTGCCCATTTACCTTTTTGAAGTCTATTCTTCTAGTAGAGTTGATACAAGAGAGAACAGTTGAAGGATGTTATTCAAATCTCCAAATTTACATCAATTTCAGAATTATAAGGAATTTGTTTTCCTAGAGGACGTGTTTTTCAAAACATTTTGACCAACCAAACAGGGGGAAAACACACCATCAATGAGTATGTGAGATTCTGTTTAGAAATGAAATTGTTGTGCAGATAGTTGCAACCTGGCTGAACACATCCTCAGTTGTATTACTTTTTTTCTGTCTTGATCTTCGAGTATCATTAATTAGTTTGTGGAGTCTGCTTTTCAAGATTATTGAGAGGTTTGAATCAACTTTTGTAGCTCCTTCACTTATTCTCATCTCCATTATTTTACGACTCCAATTACTCCCATCTCCTACTGCTTTGCTAAGCTGTTCTTGATTCTTTTTGACAGATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTTATGACTT</genome_strand>
        <mrna_strand>CCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAG.........................................................................................................................................................................................................................................................CCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGNTTCTTCTTGATGATTGTATCTACTATGGGTATCATCTTCACAATATTGNTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAAC-TTTTTTATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309663" ref_strand="+" ref_description="SGN-E309663 [cLEY-26-N22]">
      <seq>tacgaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtgtgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgcttctgaggatcgaaaagattcataatgaaggtggacgaggtcttcccttggtttgcacttgtattgaccagcttcctccaagaaccagtaggccctttgtgacatctggagtcattttatgtatatgaactgttgtagctcgtctctcgcaacatcaacttattatggtttcttcttgatgattgtatctactatggttatcatcttcacaatattgttacttgattgcctttggatacttgctgtgcaatctaaaactttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24346" stop="20975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24046" g_stop="23844" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21523" g_stop="21276" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="451" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="461"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E309663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24046" e_stop="23844"/>
          <exon e_start="21523" e_stop="21276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAGGTATGCCGATTGTTACTATTTTTCATTTAAGCATTTTTCTTTATTTGGATTATCAAATGTTGTTCTTTATGCTTATTTCTTCATTATTAAGTATTCTATTATGTTTCTGATGATCTTCATGTATAATAGCAATCAGTTAATGTTGTGCTTCCTTGATAGTTTTCTCCTTTAACAGTTACTCTGCTCCTAAACGAACAATCAGGTTAGAGAGGACTGATTTCTTGTTAATTTTCTGTTTGATATTGGACATTGTACTATAAAGTTAAGTTCAACTACGTAGGAGTAATATTAATTGAGAAGTTGAAAGGAAGTAAGTGGGGATACTGAATTCGAAATTCAGCATTCCTCCTTCCTCCACTCTTAACTGAAAAAAAAGTGAGGTCTTTGCCTCCCCGACCATTGCTAGTTCCTCCATCCTCATAAAATTTTCTAGTACATTTTCATCCCCATCTTTTAATAGGTTTAGTTTATGTTTCTGTTCCTGTTATTTGTCTTGATTGACAAAAATAACCGGTTCTATTTTGGAATGTTGCAGGCTGTTTTTGTTTAAATATATAAGGATGAGCTTAATGCTTTTATGATTCATAGACTTGATTTCCGTAATAATTTGGGGCAAAATGTAATGTGGTCATGATTGTTTTCTCTGTTATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCATCAGATATTTAGTTTACTTGCGCAGAAACACCGACAATTCTGATTGGAAGCAGGTTTCAGTTCTTTTAAGATGCAGTACTGATTCAGGAAGACGTGGTTTCTTTTGGTTGATTCCCTTTCTGGTTTTAGTCAAGGAATTAATGAAAATAAGATGAATGGTTTTGCATATCCTTGATGCCAGTAATGAAAACATCTAACTTCATCAGAAAAAAGAAAGAAATGAAATGAATGCAACCAATATATGTCATATTTACTCACATTTTATGTAATTTCAATTTCTTCAAGTGATGGCAAGTGTGGAAGTTGCACTAGCCCTTTTCCAAGGATACTCACTTCTTTAACCATTTATGATGCAGTTGCGTCGATTTAAGAAATAAGTTTGTGTCACATTGAAAGTAATTGCCCATTTACCTTTTTGAAGTCTATTCTTCTAGTAGAGTTGATACAAGAGAGAACAGTTGAAGGATGTTATTCAAATCTCCAAATTTACATCAATTTCAGAATTATAAGGAATTTGTTTTCCTAGAGGACGTGTTTTTCAAAACATTTTGACCAACCAAACAGGGGGAAAACACACCATCAATGAGTATGTGAGATTCTGTTTAGAAATGAAATTGTTGTGCAGATAGTTGCAACCTGGCTGAACACATCCTCAGTTGTATTACTTTTTTTCTGTCTTGATCTTCGAGTATCATTAATTAGTTTGTGGAGTCTGCTTTTCAAGATTATTGAGAGGTTTGAATCAACTTTTGTAGCTCCTTCACTTATTCTCATCTCCATTATTTTACGACTCCAATTACTCCCATCTCCTACTGCTTTGCTAAGCTGTTCTTGATTCTTTTTGACAGATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTT</genome_strand>
        <mrna_strand>TACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704097" ref_strand="+" ref_description="SGN-E704097 [FA23BD07]">
      <seq>atcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgcttctgaggatcgaaaagattcataatgaaggtggacgaggtcttcccttggtttgcacttgtattgaccagcttcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24921" stop="21164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24621" g_stop="23844" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21523" g_stop="21462" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="841" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E704097" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24621" e_stop="23844"/>
          <exon e_start="21523" e_stop="21462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAGGTATGCCGATTGTTACTATTTTTCATTTAAGCATTTTTCTTTATTTGGATTATCAAATGTTGTTCTTTATGCTTATTTCTTCATTATTAAGTATTCTATTATGTTTCTGATGATCTTCATGTATAATAGCAATCAGTTAATGTTGTGCTTCCTTGATAGTTTTCTCCTTTAACAGTTACTCTGCTCCTAAACGAACAATCAGGTTAGAGAGGACTGATTTCTTGTTAATTTTCTGTTTGATATTGGACATTGTACTATAAAGTTAAGTTCAACTACGTAGGAGTAATATTAATTGAGAAGTTGAAAGGAAGTAAGTGGGGATACTGAATTCGAAATTCAGCATTCCTCCTTCCTCCACTCTTAACTGAAAAAAAAGTGAGGTCTTTGCCTCCCCGACCATTGCTAGTTCCTCCATCCTCATAAAATTTTCTAGTACATTTTCATCCCCATCTTTTAATAGGTTTAGTTTATGTTTCTGTTCCTGTTATTTGTCTTGATTGACAAAAATAACCGGTTCTATTTTGGAATGTTGCAGGCTGTTTTTGTTTAAATATATAAGGATGAGCTTAATGCTTTTATGATTCATAGACTTGATTTCCGTAATAATTTGGGGCAAAATGTAATGTGGTCATGATTGTTTTCTCTGTTATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCATCAGATATTTAGTTTACTTGCGCAGAAACACCGACAATTCTGATTGGAAGCAGGTTTCAGTTCTTTTAAGATGCAGTACTGATTCAGGAAGACGTGGTTTCTTTTGGTTGATTCCCTTTCTGGTTTTAGTCAAGGAATTAATGAAAATAAGATGAATGGTTTTGCATATCCTTGATGCCAGTAATGAAAACATCTAACTTCATCAGAAAAAAGAAAGAAATGAAATGAATGCAACCAATATATGTCATATTTACTCACATTTTATGTAATTTCAATTTCTTCAAGTGATGGCAAGTGTGGAAGTTGCACTAGCCCTTTTCCAAGGATACTCACTTCTTTAACCATTTATGATGCAGTTGCGTCGATTTAAGAAATAAGTTTGTGTCACATTGAAAGTAATTGCCCATTTACCTTTTTGAAGTCTATTCTTCTAGTAGAGTTGATACAAGAGAGAACAGTTGAAGGATGTTATTCAAATCTCCAAATTTACATCAATTTCAGAATTATAAGGAATTTGTTTTCCTAGAGGACGTGTTTTTCAAAACATTTTGACCAACCAAACAGGGGGAAAACACACCATCAATGAGTATGTGAGATTCTGTTTAGAAATGAAATTGTTGTGCAGATAGTTGCAACCTGGCTGAACACATCCTCAGTTGTATTACTTTTTTTCTGTCTTGATCTTCGAGTATCATTAATTAGTTTGTGGAGTCTGCTTTTCAAGATTATTGAGAGGTTTGAATCAACTTTTGTAGCTCCTTCACTTATTCTCATCTCCATTATTTTACGACTCCAATTACTCCCATCTCCTACTGCTTTGCTAAGCTGTTCTTGATTCTTTTTGACAGATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCC</genome_strand>
        <mrna_strand>ATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729821" ref_strand="+" ref_description="SGN-E729821 [LA22AH04]">
      <seq>caaatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgctttctgaggatcgaaagattcataatgaaggtggacgaggtcttccctgggtttgcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24960" stop="21181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24660" g_stop="23844" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21523" g_stop="21481" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="861" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E729821" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24660" e_stop="23844"/>
          <exon e_start="21523" e_stop="21481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGC-TTCTGAGGATCGAAAAGGTATGCCGATTGTTACTATTTTTCATTTAAGCATTTTTCTTTATTTGGATTATCAAATGTTGTTCTTTATGCTTATTTCTTCATTATTAAGTATTCTATTATGTTTCTGATGATCTTCATGTATAATAGCAATCAGTTAATGTTGTGCTTCCTTGATAGTTTTCTCCTTTAACAGTTACTCTGCTCCTAAACGAACAATCAGGTTAGAGAGGACTGATTTCTTGTTAATTTTCTGTTTGATATTGGACATTGTACTATAAAGTTAAGTTCAACTACGTAGGAGTAATATTAATTGAGAAGTTGAAAGGAAGTAAGTGGGGATACTGAATTCGAAATTCAGCATTCCTCCTTCCTCCACTCTTAACTGAAAAAAAAGTGAGGTCTTTGCCTCCCCGACCATTGCTAGTTCCTCCATCCTCATAAAATTTTCTAGTACATTTTCATCCCCATCTTTTAATAGGTTTAGTTTATGTTTCTGTTCCTGTTATTTGTCTTGATTGACAAAAATAACCGGTTCTATTTTGGAATGTTGCAGGCTGTTTTTGTTTAAATATATAAGGATGAGCTTAATGCTTTTATGATTCATAGACTTGATTTCCGTAATAATTTGGGGCAAAATGTAATGTGGTCATGATTGTTTTCTCTGTTATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCATCAGATATTTAGTTTACTTGCGCAGAAACACCGACAATTCTGATTGGAAGCAGGTTTCAGTTCTTTTAAGATGCAGTACTGATTCAGGAAGACGTGGTTTCTTTTGGTTGATTCCCTTTCTGGTTTTAGTCAAGGAATTAATGAAAATAAGATGAATGGTTTTGCATATCCTTGATGCCAGTAATGAAAACATCTAACTTCATCAGAAAAAAGAAAGAAATGAAATGAATGCAACCAATATATGTCATATTTACTCACATTTTATGTAATTTCAATTTCTTCAAGTGATGGCAAGTGTGGAAGTTGCACTAGCCCTTTTCCAAGGATACTCACTTCTTTAACCATTTATGATGCAGTTGCGTCGATTTAAGAAATAAGTTTGTGTCACATTGAAAGTAATTGCCCATTTACCTTTTTGAAGTCTATTCTTCTAGTAGAGTTGATACAAGAGAGAACAGTTGAAGGATGTTATTCAAATCTCCAAATTTACATCAATTTCAGAATTATAAGGAATTTGTTTTCCTAGAGGACGTGTTTTTCAAAACATTTTGACCAACCAAACAGGGGGAAAACACACCATCAATGAGTATGTGAGATTCTGTTTAGAAATGAAATTGTTGTGCAGATAGTTGCAACCTGGCTGAACACATCCTCAGTTGTATTACTTTTTTTCTGTCTTGATCTTCGAGTATCATTAATTAGTTTGTGGAGTCTGCTTTTCAAGATTATTGAGAGGTTTGAATCAACTTTTGTAGCTCCTTCACTTATTCTCATCTCCATTATTTTACGACTCCAATTACTCCCATCTCCTACTGCTTTGCTAAGCTGTTCTTGATTCTTTTTGACAGATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTT</genome_strand>
        <mrna_strand>CAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTTCTGAGGATCG-AAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATAATGAAGGTGGACGAGGTCTTCCCTGGGTTTGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699991" ref_strand="+" ref_description="SGN-E699991 [FA11DC01]">
      <seq>tattgacatcatacataggaatcctgggtgcataaattaccagaaatgtgaataggaattattttgggtaggcaggtgcttagttctgagagaataacacgggttaagcctgttttagaataacagtcatgtgagttaaatcctaaagctaattctcttctagtttccaaatgtcgtgttgtagtaaattcgtgttaaagttcaatttaaggttggacttatgggttgaaaggtccaaaaaatacaaaaatggttggaattatgagttatcttgaatcaacaaatccattacccaagacaagatctcgaatcaaccaatcgtcacatatttcatggtttgttacctaaccacgactttaggttttctctgaaggggattaccatctttcaatgagtgaactggtggtaaatctgatcctagtaataaaagaagaagagaaaggaaaaaaagaagaagagtgaagttgtgatcaattaaataccaagtccaaagccgccttttcaaatttgtcacctatcaagcgacatgtatgccctaatttggtatttccaagtgtgagcaaaatccaaggtcagctttttaatgatttggctctgctctagtcttctagatgctgttctttttatcatccacatgcttaccatgaaactgttaacttaccttaagattagttgggaaagaaaaagtgtacataaagagtgttttggttccgggtgatgaaaggatagacaaccctatggtgtatatgcttgttaagccagaaagatctcctttaagcatggaaagtggtgtagacatttgaggctattattatattattattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="23496" stop="22072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23196" g_stop="22372" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E699991" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23196" e_stop="22372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCC-AAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCT-AAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTC-TTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCA</genome_strand>
        <mrna_strand>TATTGACATCATACATAGGAATCCTGGGTGCATAAATTACCAGAAATGTGAATAGGAATTATTTT-GGGTAGGCAGGTGCTTAGTTCTGAGAGAATAACACGGGTTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTAAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACAAATCCATTACCCAAGACAAGATCTCGAATCAACCAATCGTCACATATTTCA-TGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTGAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATCAATTAAATACCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGTATGCCCTAATTTGGTATTTCCAAGTGTGAGCAAAATCCAAGGTCAGCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTTATCATCCACATGCTTACCATGAAACTGTTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCCGGGTGATGAAAGGATAGACAACCCTATGGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATATTATTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726364" ref_strand="+" ref_description="SGN-E726364 [LA11CD10]">
      <seq>attctctcatattcctcctcctcctccttcttcatcatcatcaaatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaagtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctgaagaagacgaggaggaagctgagtaccatgatgcttctgaggatcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24996" stop="23546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24698" g_stop="23846" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E726364" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24698" e_stop="23846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCATATTCCTCCTCCTCCTTCTTCTTCATCA---TCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAA</genome_strand>
        <mrna_strand>ATTCTCTCATATTCCTCCTCCTCCTCCTTCTTCATCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAAGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718238" ref_strand="+" ref_description="SGN-E718238 [FC04AD07]">
      <seq>gccccttctagattctctcatattcctcctcctcctccttcttcatcatcatcaaatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcaaaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcaaattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggattcggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="25008" stop="23594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24709" g_stop="23894" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E718238" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24709" e_stop="23894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTTCTTC-T--TCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGA</genome_strand>
        <mrna_strand>GCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTCCTTCTTCATCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAAAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAAATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTCGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719075" ref_strand="+" ref_description="SGN-E719075 [FC06CG02]">
      <seq>aatcggccgaattggccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatcccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24940" stop="23597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24640" g_stop="23897" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="759" r_length="745" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E719075" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24640" e_stop="23897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGC</genome_strand>
        <mrna_strand>GCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730792" ref_strand="+" ref_description="SGN-E730792 [LA25AH04]">
      <seq>ccatatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgataagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggagctgattggggatctgttgagttatctattgatgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggctctagcgctgttattatggggagtcgaggatttggagctactaagagggggagggatggaagacttgggcagtgttagtgattattgtgttaggcactgtgtttgtcctgttgtggttgttaggtatccccgatgataaggatgctggaaatgctgttgtagagcccgtggtttctgttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24960" stop="23603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24661" g_stop="23903" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E730792" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24661" e_stop="23903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCT-TAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGG-AGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTAT-CCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTC</genome_strand>
        <mrna_strand>CCATATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGATAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGAGCTGATTGGGGATCTGTTGAGTTATCTATTGATGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTCTAGCGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGGGATGGAAGACTTGGGCAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTGTTGTGGTTGTTAGGTATCCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724144" ref_strand="+" ref_description="SGN-E724144 [FC23AG08]">
      <seq>tggcggccaaatcggccgaattgaacagttaatcaattattccccttctagattctctcatattcctcctcctcctccttcttcatcatcatcaaatagagcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccgtcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaaaagggggagtgatggaagacttgggagtgttagtgattattgtgttaggcactgtgtttgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="25038" stop="23676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24721" g_stop="23976" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="778" r_length="750" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E724144" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24721" e_stop="23976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCAATTATTCCCCTTCTAGATTCTCTCATA-T--TCCTCCTCCTCCTTCTTCTTCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTG</genome_strand>
        <mrna_strand>TTAATCAATTATTCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTCCTTCTTCATCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCGTCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAAAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTTTGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729268" ref_strand="+" ref_description="SGN-E729268 [LA20CB06]">
      <seq>gcaattctcgctgccatagcgataaacaagcatcaaatcaaacaaacaaaatcaattcaaaagaaaagaaaaggtcaactcccataagaatgcagcaacaacccccatcccccacccccgattccgatctcccccgtctagctaacatcaaaatcaaatcatcttctccacgttttcccccacccaccaccccttccatcactgatacacctaccgccggagctcagcggaggatcggaatcgccgtcgatctaagcgacgagtctgctttcgccgttaagtgggctgtcaatcagtacctccgtcctggtgacgctgttatccttgttcacgtccgtccaacttccgtactctacggtgctgattggggatctgttgagttatctattgttgatacggagaatgaggagagtcagaggaagcttgaggatgatttcgatacgtttactactactaaagcgtctgatttagctcagcctttggttgatgctcagattccgtttaagatccatattgttaaggatcatgatatgagggagaggttgtgtcttgaggttgagaggttagggcttagtgctgttattatggggagtcgaggatttggagctactaagagggggagtgatggaagacttgggagtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="24952" stop="23709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24652" g_stop="24009" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E729268" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24652" e_stop="24009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAA-AAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTA</genome_strand>
        <mrna_strand>GCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAGAAAAGGTCAACTCCCATAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTCAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGTTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACTAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314997" ref_strand="+" ref_description="SGN-E314997 [cTOA-31-M6]">
      <seq>aaaaacacctttcttactgcctcttccccaccccaccaactcacaaaatttcaactactgttccattgaaaatggctacttctcttcagttttcttcagatcatcaccctattcctcaggaaaatcatcaaacaacgaaccagacctcaacgggaggacgtagaaggtcgagtaaaaatggacagaagaagaagaagcaaccacaaagaggaatgggagttgaacaactcgaacgtcttcgagtacaagatcagatgaaaaacagtacaatccatggcgttcatcataatcatcagtactactctaataacaatttccctaaattaactcctgtttcatcatttaccggcggtggtagtgctagtgctgatcctggaaattatagtaattctattttgaactcttcaccagtacttcagttccccaaattgtgtgcagtgagccctaatgatttttttatgcaacaaaaagttgtgaatactgggtttattggatctagtagtacaaatcagttgatgatttcttctcatgatcatcatcagtttcaatctcagatgaatctctacggatttgcaacttctaagcccagtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="28111" stop="26918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27811" g_stop="27218" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E314997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27811" e_stop="27218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACTATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</genome_strand>
        <mrna_strand>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACAATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362550" ref_strand="+" ref_description="SGN-E362550 [cLPP-1-C10]">
      <seq>tccttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatttaccaaaaattacaagtagaatgtccacaagtgcaagcatggatgatttttccttattcactacttctacatcctctttattttctttttccttcttctcttcatcttgtcatcacagagaacgcaatttccatcttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36122" stop="34471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35822" g_stop="35485" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34771" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="601" r_length="263" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E362550" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35822" e_stop="35485"/>
          <exon e_start="35037" e_stop="34771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTTCTTCTTCTTCTTCTCGTTCGTCTTGTTCATCACAGAGAACGCAATTTTCATCTTTTCAC</genome_strand>
        <mrna_strand>TCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTT-TT-TCCTTCTTCTC-TTCATCTTG-TCATCACAGAGAACGCAATTTCCATCTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363194" ref_strand="+" ref_description="SGN-E363194 [cLPP-19-G22]">
      <seq>ttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatttaccaaaaattacaagtagaatgtccacaagtgcaagcatggatgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36119" stop="34566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35819" g_stop="35485" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34866" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="507" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E363194" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35819" e_stop="35485"/>
          <exon e_start="35037" e_stop="34866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTT</genome_strand>
        <mrna_strand>TTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362791" ref_strand="+" ref_description="SGN-E362791 [cLPP-2-O23]">
      <seq>tatcctaaattcgcgatattgtgaatccaaagacatttttgtggtgatatccggctatctacttgctccctgcaaatgcctatggaattctgtatatattggacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgctataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatttaccaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36182" stop="34605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35882" g_stop="35485" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34905" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="530" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E362791" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35882" e_stop="35485"/>
          <exon e_start="35037" e_stop="34905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTA</genome_strand>
        <mrna_strand>TATCCTAAATTCGCGATATTGTGAATCCAAAGACATTTTTGTGGTGATAT-CCGGCTATCTACTTGCTCCCTGCAAATGCCTATGGAATTCTGTATATATTGGACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGCTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373719" ref_strand="+" ref_description="SGN-E373719 [TUS-33-O2]">
      <seq>tttatcctaaattcgcgatatttttaatccaaagacatttttgtctttctatccccctatctccttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatcaaaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36184" stop="34617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35884" g_stop="35485" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34917" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="520" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E373719" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35884" e_stop="35485"/>
          <exon e_start="35037" e_stop="34917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATT</genome_strand>
        <mrna_strand>TTTATCCTAAATTCGCGATATTTTTAATCCAAAGACATTTTTGTCTTTCTAT-CCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361882" ref_strand="+" ref_description="SGN-E361882 [cLPP-12-J22]">
      <seq>ctatctccttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaaagaaaaaaagttttcttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36127" stop="34624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35827" g_stop="35485" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34924" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="457" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E361882" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35827" e_stop="35485"/>
          <exon e_start="35037" e_stop="34924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCA</genome_strand>
        <mrna_strand>CTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361414" ref_strand="+" ref_description="SGN-E361414 [cLPP-6-J11]">
      <seq>tttatcctaaattcgcgatatttttaatccaaagacatttttgtctttctatccccctatctccttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcattggggaagaaaggccagaggaaagagcataagtattcatttggatcatgtaaaaagttatcaacaaaatttgagaaaatatttcattctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36184" stop="34646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35884" g_stop="35485" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35037" g_stop="34946" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E361414" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35884" e_stop="35485"/>
          <exon e_start="35037" e_stop="34946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTGGTAAGTTCAAGGGGAAAAAATTTGACTAGAAAATGAAGATATTTATTGAGTATGTCTGCATTTATAATATTTCTTGCATCTCTCTTTTATTAAAAAAAAAAAGAAAAGCAAAGTGACGTATAGTTCAAAACTCGATAAGTAATGATCTGAGAAATTTCTTGGGATAGTGGTGCATAGTTCGAATTTGATGAATAATATGTCTCTGGCTTCGTTTAATCATACATCCACCGTTCTTACTTAAATAGTGGCGCACGGTTTAACATTTTTATCTTTGATATGATCTGAACCTGTGATATGCGCCTAATCACACATTATGAATAACTAGTTGTGTGAGATTCGTGTTGGTATCCGACATTGGGCCTAGTGCTGGTTCATAGCACTAGACCAAATTAAAAGATTTATTATTTGTCACTTGATGAAACTTACAAAATTGAATTGTTTTTGCAGGGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAA</genome_strand>
        <mrna_strand>TTTATCCTAAATTCGCGATATTTTTAATCCAAAGACATTTTTGTCTTTCTAT-CCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364320" ref_strand="+" ref_description="SGN-E364320 [cLPP-20-F4]">
      <seq>ttcctccctgcaaatgcctatttagttctgtatatattttacacattgggcatgggcaaatggcaaaagtagcgaaaaatcgaggaaggaataggttttttaatagttgttataagcccctacatttcaacgatgatatgcctattacaactaaacgaggccatttgtataattcaacagatatatcgaatttgaagagagtaaaatcacaagaaaaattggattcaatattgggaaaagatttgaccaaaaattttcgaccaaatcgaaaggaaaatgcctttggaaggaatttttctcatgcactcaaaaatgtgttttctgatacatcaattgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36119" stop="35181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35819" g_stop="35485" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E364320" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35819" e_stop="35485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTG</genome_strand>
        <mrna_strand>TTCCTCCCTGCAAATGCCTATTTAGTTCTGTATATATTTTACACATTGGGCATGGGCAAATGGCAAAAGTAGCGAAAAATCGAGGAAGGAATAGGTTTTTTAATAGTTGTTATAAGCCCCTACATTTCAACGATGATATGCCTATTACAACTAAACGAGGCCATTTGTATAATTCAACAGATATATCGAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATATTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAAAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTCTGATACATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366274" ref_strand="+" ref_description="SGN-E366274 [cLPT-1-D16]">
      <seq>aattagggagaaaggcggttgctgaacatttgagcaaagaatccatacgaatatatatacgcttttttttttttcttcttcttcctgtagctctcggcgattgtaattgaagaatccatttgcgaagaaaacgaagaaccctatggagcttctccgatcaaaccttgctcgtgttcggattccagagccgactactcgtatctacaagcacgagtgctgcatttctttcgatactccgaaatccgatggcgggctgtttgttgatatgagtacttttcttgcatttggaagggattgtgttgattggaactatgagaagactgggaaccctgtttatttgcatataaagcagacaaagaaggcagatgctgaagatagaccgtccaaaaaacccactctcttggctataggtttagacggagggtttgataacagtgaaccccagtacgaagaattctatgaaatagttataatgcctgataatgtcactcttcctttcccatcggtggaattgcctgagaaggttagattggctgttgatgctattttactagctgaaggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36968" stop="39300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37268" g_stop="37501" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38389" g_stop="38560" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="410" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38751" g_stop="38863" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="523" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38957" i_length="94">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38958" g_stop="39000" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="566" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E366274" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37268" e_stop="37501"/>
          <exon e_start="38389" e_stop="38560"/>
          <exon e_start="38751" e_stop="38863"/>
          <exon e_start="38958" e_stop="39000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGGAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACAC----TATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCGGTAAATCTTCAATTCCAATTTGGAATGTTCATTTTGCTGTAATTTTACTTCATTATTCGTTTTTTTCGTTGTTCCTAGTTGTTACGATTGTAGATGTTATTCGGACTCGTCCAGCATAGTTTGGAAGGCTGTAATTCTCGTCCTTGTGCCATTTTTGGTAAGAGAAGTTGTATGTTAATTCGGTAGGGTTTAGGAGCTTATACTAGGGTTTATAGTTCAATCCGATTTGGTTAGAAACTTCCAGTTGATTAGTAGTATTGCGAGTGATTTTTTTTTTGTAAAGCTGCTATGAAGTTGTAGAATTAAAATTTTAATTTCTAAAAACCCCTATTGATATTTTGACCAAAAGCAAAACCTTTCTTTGAACATTTAGTCATTCTACTTATACAGGGAATAAGTGATGATTCGAACGGAGTCAAAATAGATACAGAAGATCCATATACAGTCCATGACTTGTACTAAATATTAGTCATCCTCACTCGATTTTCAAGCTTGTAATTCGTAGCCTTGTGCAATTTTTAGCAAGTTCGGTGCATATTAAGAGTTTATTCTTGGTTTATGAGTCATGGTTCACTCCGATTGAAGTTGAGCCTGCAGTTGATTAGTACTGATGAGTGATTTGTCTATCAACTTGTAGAACAGACTCAAAATATAGTGGAGTAGATATAGAGAATTCCCATGGCCAACCCCAGCTAGTTTAGGATTGACATATTAGTAGTAGTTGTAGTGGTATAGCCCCAATGAAATGTCATGCTGATGCTGGCTTATCAGTTTGATCTTTTCCATCTGTGTTCACTAATGCTCATTTAGGAAATATATCTTCACTTATGAAGCAGTTGCTATTGATTTAGCTACAATTTGTAACATTTTCTTTGCTGTTTTTCCAGAAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAGGTACTTAAATATTTCACATATAGCTAAAAGCTTCCAAAACTAGGCCGAAAAAGAAAAAAAGAAGAATAAAGAGCCATATAAGTTCGCATTTTCTGATATTTATCATTTGACAGAGTTAAGCCTACCCTTACTAATTTGAGGTTGAAGCTTAGTTGATAGATTGACTTGGATTATGCCTTTCTCCTTCTAGGTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAGGTAAACTACTCTTTGAAGATCCTTTCACAGGTTCCCTTTGTTTAGAGTAAAATGAAACATTTAAATATTGCTTATGTTCATCACGACTTTCCAGGTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</genome_strand>
        <mrna_strand>AATTAGGGAGAAAGGCGGTTGCTGAACATTTGAGCAAAGAATCCATACGAATATATATACGCTTTTTTTTTTTTCTTCTTCTTCCTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCTGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG..............................................................................................................................................................................................GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATAATGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAG..............................................................................................GTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336425" ref_strand="+" ref_description="SGN-E336425 [cTOE-4-M5]">
      <seq>gagaaaggcggttgctgaatatttgagcaaagaatccatacgaatatatatacactattttttcctcttcttcttgtagctctcggcgattgtaattgaagaatccatttgcgaagaaaacgaagaaccctatggagcttctccgatcaaaccttgctcgtgttcggattccagagccgactactcgtatctacaagcacgagtgctgcatttctttcgatactccgaaatccgatggcgggctgtttgttgatatgagtacttttcttgcatttggaagggattgtgttgattggaactatgagaagactgggaacccagtttatttgcatataaagcagacaaagaaggcagatgctgaagatagaccgtccaaaaaacccactctcttggctataggtttagacggagggtttgataacagtgaaccccagtacgaagaattctatgaaatagttatattgcctgataatgtcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36975" stop="39131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37275" g_stop="37501" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38389" g_stop="38560" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="399" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38751" g_stop="38831" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="480" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E336425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37275" e_stop="37501"/>
          <exon e_start="38389" e_stop="38560"/>
          <exon e_start="38751" e_stop="38831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCGGTAAATCTTCAATTCCAATTTGGAATGTTCATTTTGCTGTAATTTTACTTCATTATTCGTTTTTTTCGTTGTTCCTAGTTGTTACGATTGTAGATGTTATTCGGACTCGTCCAGCATAGTTTGGAAGGCTGTAATTCTCGTCCTTGTGCCATTTTTGGTAAGAGAAGTTGTATGTTAATTCGGTAGGGTTTAGGAGCTTATACTAGGGTTTATAGTTCAATCCGATTTGGTTAGAAACTTCCAGTTGATTAGTAGTATTGCGAGTGATTTTTTTTTTGTAAAGCTGCTATGAAGTTGTAGAATTAAAATTTTAATTTCTAAAAACCCCTATTGATATTTTGACCAAAAGCAAAACCTTTCTTTGAACATTTAGTCATTCTACTTATACAGGGAATAAGTGATGATTCGAACGGAGTCAAAATAGATACAGAAGATCCATATACAGTCCATGACTTGTACTAAATATTAGTCATCCTCACTCGATTTTCAAGCTTGTAATTCGTAGCCTTGTGCAATTTTTAGCAAGTTCGGTGCATATTAAGAGTTTATTCTTGGTTTATGAGTCATGGTTCACTCCGATTGAAGTTGAGCCTGCAGTTGATTAGTACTGATGAGTGATTTGTCTATCAACTTGTAGAACAGACTCAAAATATAGTGGAGTAGATATAGAGAATTCCCATGGCCAACCCCAGCTAGTTTAGGATTGACATATTAGTAGTAGTTGTAGTGGTATAGCCCCAATGAAATGTCATGCTGATGCTGGCTTATCAGTTTGATCTTTTCCATCTGTGTTCACTAATGCTCATTTAGGAAATATATCTTCACTTATGAAGCAGTTGCTATTGATTTAGCTACAATTTGTAACATTTTCTTTGCTGTTTTTCCAGAAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAGGTACTTAAATATTTCACATATAGCTAAAAGCTTCCAAAACTAGGCCGAAAAAGAAAAAAAGAAGAATAAAGAGCCATATAAGTTCGCATTTTCTGATATTTATCATTTGACAGAGTTAAGCCTACCCTTACTAATTTGAGGTTGAAGCTTAGTTGATAGATTGACTTGGATTATGCCTTTCTCCTTCTAGGTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTC</genome_strand>
        <mrna_strand>GAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG..............................................................................................................................................................................................GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329497" ref_strand="+" ref_description="SGN-E329497 [cTOD-11-P3]">
      <seq>aaggcggttgctgaatatttgagcaaagaatccatacgaatatatatacactattttttcctcttcttcttgtagctctcggcgattgtaattgaagaatccatttgcgaagaaaacgaagaaccctatggagcttctccgatcaaaccttgctcgtgttcggattccagagccgactactcgtatctacaagcacgagtgctgcatttctttcgatactccgaaatccgatggcgggctgtttgttgatatgagtacttttcttgcatttggaagggattgtgttgattggaactatgagaagactgggaacccagtttatttgcatataaagcagacaaagaaggcagatgctgaagatagaccgtccaaaaaacccactctcttggctataggtttagacggagggtttgataacagtgaaccccagtacgaagaattctatgaaatagttatattgcctgataatgtcactcttcctttcccatcggtggaattgcctgagaaggttagattggctgttgatgctattttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36979" stop="39286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37279" g_stop="37501" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38389" g_stop="38560" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="395" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38751" g_stop="38863" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38864" i_stop="38957" i_length="94">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38958" g_stop="38986" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="537" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E329497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37279" e_stop="37501"/>
          <exon e_start="38389" e_stop="38560"/>
          <exon e_start="38751" e_stop="38863"/>
          <exon e_start="38958" e_stop="38986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCGGTAAATCTTCAATTCCAATTTGGAATGTTCATTTTGCTGTAATTTTACTTCATTATTCGTTTTTTTCGTTGTTCCTAGTTGTTACGATTGTAGATGTTATTCGGACTCGTCCAGCATAGTTTGGAAGGCTGTAATTCTCGTCCTTGTGCCATTTTTGGTAAGAGAAGTTGTATGTTAATTCGGTAGGGTTTAGGAGCTTATACTAGGGTTTATAGTTCAATCCGATTTGGTTAGAAACTTCCAGTTGATTAGTAGTATTGCGAGTGATTTTTTTTTTGTAAAGCTGCTATGAAGTTGTAGAATTAAAATTTTAATTTCTAAAAACCCCTATTGATATTTTGACCAAAAGCAAAACCTTTCTTTGAACATTTAGTCATTCTACTTATACAGGGAATAAGTGATGATTCGAACGGAGTCAAAATAGATACAGAAGATCCATATACAGTCCATGACTTGTACTAAATATTAGTCATCCTCACTCGATTTTCAAGCTTGTAATTCGTAGCCTTGTGCAATTTTTAGCAAGTTCGGTGCATATTAAGAGTTTATTCTTGGTTTATGAGTCATGGTTCACTCCGATTGAAGTTGAGCCTGCAGTTGATTAGTACTGATGAGTGATTTGTCTATCAACTTGTAGAACAGACTCAAAATATAGTGGAGTAGATATAGAGAATTCCCATGGCCAACCCCAGCTAGTTTAGGATTGACATATTAGTAGTAGTTGTAGTGGTATAGCCCCAATGAAATGTCATGCTGATGCTGGCTTATCAGTTTGATCTTTTCCATCTGTGTTCACTAATGCTCATTTAGGAAATATATCTTCACTTATGAAGCAGTTGCTATTGATTTAGCTACAATTTGTAACATTTTCTTTGCTGTTTTTCCAGAAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAGGTACTTAAATATTTCACATATAGCTAAAAGCTTCCAAAACTAGGCCGAAAAAGAAAAAAAGAAGAATAAAGAGCCATATAAGTTCGCATTTTCTGATATTTATCATTTGACAGAGTTAAGCCTACCCTTACTAATTTGAGGTTGAAGCTTAGTTGATAGATTGACTTGGATTATGCCTTTCTCCTTCTAGGTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAGGTAAACTACTCTTTGAAGATCCTTTCACAGGTTCCCTTTGTTTAGAGTAAAATGAAACATTTAAATATTGCTTATGTTCATCACGACTTTCCAGGTTAGATTGGCTGTTGATGCTATTTTACT</genome_strand>
        <mrna_strand>AAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG..............................................................................................................................................................................................GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAG..............................................................................................GTTAGATTGGCTGTTGATGCTATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363640" ref_strand="+" ref_description="SGN-E363640 [cLPP-3-D7]">
      <seq>gctgaacatttgagcaaagaatccatacgaatatatatacgctttttttttcttcttcttcctgtagctctcggcgattgtaattgaagaatccatttgcgaagaaaacgaagaaccctatggagcttctccgatcaaaccttgctcgtgttcggattccagagccgactactcgtatctacaagcacgagtgctgcatttctttcgatactccgaaatacgatggcgggctgtttgttgatatgagtacttttcttgcatttggaagggattgtgttgattggaactatgagaagactgggaaccctgtttatttgcatataaagcagacaaagaaggcagatgctgaagatagaccgtccaaaaaacccactctcttggctatatgtttagacggagggtttgataacagtgaaccccagtacgaagaattctatgaaatagttataatgcctgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="36988" stop="39124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37288" g_stop="37501" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38389" g_stop="38560" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="387" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38751" g_stop="38824" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="461" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E363640" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37288" e_stop="37501"/>
          <exon e_start="38389" e_stop="38560"/>
          <exon e_start="38751" e_stop="38824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAATATTTGAGCAAAGAATCCATACGAATATATATACAC-TATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCGGTAAATCTTCAATTCCAATTTGGAATGTTCATTTTGCTGTAATTTTACTTCATTATTCGTTTTTTTCGTTGTTCCTAGTTGTTACGATTGTAGATGTTATTCGGACTCGTCCAGCATAGTTTGGAAGGCTGTAATTCTCGTCCTTGTGCCATTTTTGGTAAGAGAAGTTGTATGTTAATTCGGTAGGGTTTAGGAGCTTATACTAGGGTTTATAGTTCAATCCGATTTGGTTAGAAACTTCCAGTTGATTAGTAGTATTGCGAGTGATTTTTTTTTTGTAAAGCTGCTATGAAGTTGTAGAATTAAAATTTTAATTTCTAAAAACCCCTATTGATATTTTGACCAAAAGCAAAACCTTTCTTTGAACATTTAGTCATTCTACTTATACAGGGAATAAGTGATGATTCGAACGGAGTCAAAATAGATACAGAAGATCCATATACAGTCCATGACTTGTACTAAATATTAGTCATCCTCACTCGATTTTCAAGCTTGTAATTCGTAGCCTTGTGCAATTTTTAGCAAGTTCGGTGCATATTAAGAGTTTATTCTTGGTTTATGAGTCATGGTTCACTCCGATTGAAGTTGAGCCTGCAGTTGATTAGTACTGATGAGTGATTTGTCTATCAACTTGTAGAACAGACTCAAAATATAGTGGAGTAGATATAGAGAATTCCCATGGCCAACCCCAGCTAGTTTAGGATTGACATATTAGTAGTAGTTGTAGTGGTATAGCCCCAATGAAATGTCATGCTGATGCTGGCTTATCAGTTTGATCTTTTCCATCTGTGTTCACTAATGCTCATTTAGGAAATATATCTTCACTTATGAAGCAGTTGCTATTGATTTAGCTACAATTTGTAACATTTTCTTTGCTGTTTTTCCAGAAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAGGTACTTAAATATTTCACATATAGCTAAAAGCTTCCAAAACTAGGCCGAAAAAGAAAAAAAGAAGAATAAAGAGCCATATAAGTTCGCATTTTCTGATATTTATCATTTGACAGAGTTAAGCCTACCCTTACTAATTTGAGGTTGAAGCTTAGTTGATAGATTGACTTGGATTATGCCTTTCTCCTTCTAGGTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAAT</genome_strand>
        <mrna_strand>GCTGAACATTTGAGCAAAGAATCCATACGAATATATATACGCTTTTTTTTTCTTCTTCTTCCTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCTGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAT..............................................................................................................................................................................................GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATAATGCCTGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265028" ref_strand="+" ref_description="SGN-E265028 [cLEI-2-K9]">
      <seq>agactgaaatgacgactgctgagagagaactagaccaaaattttaactttgattggaaccggattcaagagactggtgaggacgttgaaccactttttggacctggttacactggattagtcaatcttggtaacagttgctacttggctgctacaatgcaggttatgttctcaacgcgttcattttgttcaagatactactttgatcaacgtctgaaagaaacttttactacggctcctgctgatccgactgtagaccttaacatgcagctaacagagctggctcatggtttgctttctggtaaatattcgggtcctgttttggacaaggataatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="40558" stop="42347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40858" g_stop="40993" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40994" i_stop="41100" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41101" g_stop="41157" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="193" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41158" i_stop="41272" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41273" g_stop="41350" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="271" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41351" i_stop="41993" i_length="643">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41994" g_stop="42048" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="326" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42049" i_stop="42135" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.864" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42136" g_stop="42147" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="338" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E265028" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40858" e_stop="40993"/>
          <exon e_start="41101" e_stop="41157"/>
          <exon e_start="41273" e_stop="41350"/>
          <exon e_start="41994" e_stop="42048"/>
          <exon e_start="42136" e_stop="42147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAGGTGTGGGTAACTTTTTATTACTGCTGCTTAGGCAACATGGCATTTCATATCTTCATTTCTTGAAAGAAACATATGAAATTCTCTGGTCTCATATATTGTTCTTGCAGTTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAGGTAAGATAATTATACTTGTGATAAATGTATTTGATGCTTATGAACTGATGAAAGTTAAAATGGTTTTAGATTTCCTTCTTTTTACATCTTACCATCTGATGTGTATCCTTGTCAGATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCTGTGAGTAACTTGGATCTGTTCATTTACCAGTTTAGCTTTTTCATTACTTATTTATCAACTAGTTATTCCATTAGTTATGCTCTCTGCTGCAGCAAAAATACTCTGTTTAACAAAACATGGCATGTTTGATACTGAGTAGTGCTTAAGTCTCTCATTGTTACAGGAAGCTAGTCACTGCACACACTTAATGCATTTTGAAACTGAATTTTTCTGTTAGGGTTTTCTAATAATTAATTTTGAGAAAATATTCATATTCAGCAAATCATATTTTGCTTGAATGAATGATACCAACCCCCAACCTTCTTTCCCTTTTATTCCTTTTTTTTAAAGGCCTTTTTTATCATGAGGGGTATCTAGCAGGTTTTATTCAATACCCTGTAATTGCAATTCAGGCTGTACGATACTTATTATGTTAAGAGTCCTACAGTTAACTGAATTTTCTGGTCCAAATACATACCAATCCCTAGTTGATGACCTGTATAGCTGACACGACGAGGCATAGTTGTTTAGTATAAACAGTGATCCCTGTAGAGTCTTTCCATGCTTCATTTTTCAAATTTGATAGATATGTCATAATAGTAGCTATTGTTATGAATTTTGCTTGCGCGCTCAACTTGCTGACGGGTGACCTATATTTTGGCAGAACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAGGTATGTGTGAAAGCATTTTGTTCCTTTTTGTTTCATCTGCTATTTTTTTTTCCAATCGTGGCTTATAGTTAATTATTGGTTATTCAGAAGGATAATACT</genome_strand>
        <mrna_strand>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAG...........................................................................................................TTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAG...................................................................................................................ATACTACTTTGATCAACGTCTGAAAGAAACTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTTTGGAC.......................................................................................AAGGATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214186" ref_strand="+" ref_description="SGN-E214186 [cLEC-77-K1]">
      <seq>cggattcaagagactggtgaggacgttgaaccactttttggacctggttacactggattagtcaatcttggtaacagttgctacttggctgctacaatgcaggttatgttctcaacgcgttcattttgttcaagatactactttgatcaacgtctgaaagaagcttttactacggctcctgctgatccgactggagaccttaacatgcagctaacaaagctggctcatggtttgctttctggtaaatattcaggtcctggtctggacaaggataatactgctaatgctgtaagctcacaaaaacaagaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="40617" stop="42467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40917" g_stop="40993" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40994" i_stop="41100" i_length="107">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41101" g_stop="41157" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="134" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41158" i_stop="41272" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41273" g_stop="41350" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="212" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41351" i_stop="41993" i_length="643">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41994" g_stop="42048" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="267" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42049" i_stop="42135" i_length="87">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.864" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42136" g_stop="42168" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="300" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E214186" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40917" e_stop="40993"/>
          <exon e_start="41101" e_stop="41157"/>
          <exon e_start="41273" e_stop="41350"/>
          <exon e_start="41994" e_stop="42048"/>
          <exon e_start="42136" e_stop="42168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAGGTGTGGGTAACTTTTTATTACTGCTGCTTAGGCAACATGGCATTTCATATCTTCATTTCTTGAAAGAAACATATGAAATTCTCTGGTCTCATATATTGTTCTTGCAGTTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAGGTAAGATAATTATACTTGTGATAAATGTATTTGATGCTTATGAACTGATGAAAGTTAAAATGGTTTTAGATTTCCTTCTTTTTACATCTTACCATCTGATGTGTATCCTTGTCAGATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCTGTGAGTAACTTGGATCTGTTCATTTACCAGTTTAGCTTTTTCATTACTTATTTATCAACTAGTTATTCCATTAGTTATGCTCTCTGCTGCAGCAAAAATACTCTGTTTAACAAAACATGGCATGTTTGATACTGAGTAGTGCTTAAGTCTCTCATTGTTACAGGAAGCTAGTCACTGCACACACTTAATGCATTTTGAAACTGAATTTTTCTGTTAGGGTTTTCTAATAATTAATTTTGAGAAAATATTCATATTCAGCAAATCATATTTTGCTTGAATGAATGATACCAACCCCCAACCTTCTTTCCCTTTTATTCCTTTTTTTTAAAGGCCTTTTTTATCATGAGGGGTATCTAGCAGGTTTTATTCAATACCCTGTAATTGCAATTCAGGCTGTACGATACTTATTATGTTAAGAGTCCTACAGTTAACTGAATTTTCTGGTCCAAATACATACCAATCCCTAGTTGATGACCTGTATAGCTGACACGACGAGGCATAGTTGTTTAGTATAAACAGTGATCCCTGTAGAGTCTTTCCATGCTTCATTTTTCAAATTTGATAGATATGTCATAATAGTAGCTATTGTTATGAATTTTGCTTGCGCGCTCAACTTGCTGACGGGTGACCTATATTTTGGCAGAACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAGGTATGTGTGAAAGCATTTTGTTCCTTTTTGTTTCATCTGCTATTTTTTTTTCCAATCGTGGCTTATAGTTAATTATTGGTTATTCAGAAGGATAATACTGCTAATGCTGTAAGCTCACAG</genome_strand>
        <mrna_strand>CGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAG...........................................................................................................TTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAG...................................................................................................................ATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGGAGACCTTAACATGCAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCAGGTCCTGGTCTGGAC.......................................................................................AAGGATAATACTGCTAATGCTGTAAGCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294427" ref_strand="+" ref_description="SGN-E294427 [cLET-14-K20]">
      <seq>gctagtcaccctgaattttcaacaatgagacaacaggatgcgttagagttcttcctgcattttattgatcaagttgaacggataaactctgggacacctaattttgatccatcaaggagcttcaagtttggtattgaagaacgcctccaatgttcctcgggcaaagtcacttacaacagaaggaatgattatattctgtctcttaatattcctttggagagggctataaataaaaaagagctagcagaatttcaaaatttgaaggctgagagagctgcaggaggaaaagaactgtctgctgatgaaattgttcgccctagagtatcattgaaggattgcctagattgcttttcagctcctgaggaggtgcatgatttctacagcacagctttaacagctaggactacagcaatcaaaactgcaggtttgacttcttttccagattatctggttttgcacatgcggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="42226" stop="44187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42526" g_stop="42561" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42562" i_stop="42964" i_length="403">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42965" g_stop="43163" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="235" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43300" g_stop="43357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43426" g_stop="43548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="416" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43833" g_stop="43887" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="471" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E294427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42526" e_stop="42561"/>
          <exon e_start="42965" e_stop="43163"/>
          <exon e_start="43300" e_stop="43357"/>
          <exon e_start="43426" e_stop="43548"/>
          <exon e_start="43833" e_stop="43887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAGGTACACTGACATTCTTGGAATCTTCTTCTCCCAGACAATTGCTTTTAATTTAAGATTATCAGATTCAAGCATAATAATGCTTCCCTCTACTAAAAGAACTCCAGCAATCTCTTGGTACTGTTTCACGCCTTAAAAATCCATTTGAGCTCTTTGTCCATCCAGCTGATGCAGTGTTTGGCTAAGTTGATACATACATCTACACTTGGATTTTCTTTTCAATATAGTCTGCCACTGATGTGTCAGAACTGTTGTGCATTGCTCAAAATAGTTTCATGGTCCCTTCACTTTATTGCCTTTAAACCCCAGTCGGTTATTTTTCTGTCTTGCGATCACGTTCATTGTTTGTTACCATTGCCATGGCTATTGTTATTCTTGTGGTTTATTGATAACAACGTATGTCTAGGATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAAGTGAGTTTTCTCTCTTATGTAATGCTTTTTTCTTGCCATTTTCTTATATATTGTTCATTGCAAAATTTCAGCTGAGCTTGATATTAATGAGTAATACTGCCTCCATTGTGATATTTTGTTTTGTATGAAATTCCAGAAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACTGTGAGTTTCAAGTGACCAATACATGCTTGCCTTTCATGTACTTCAGCTAAATGTATGGGTTTTTGCAGGTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAAGTAATCTTGTTATTCTCCTCTATGAAGTTATTTCTTCAATTTTTCTCTTGTTCTGCTTGTGGCATCTCAAATTTAGTTTACCTGCACCTCGTCTGTTGTTTTAGTAGGGCCTAATATCTCGTCTTTTTGGCTTCCATACTTCTTACACAGTTGGCTGTAGAAATTATAGATGTCTTGTCTGTCAGCAGTGGATGGCTAGTGTCTGTCAGCTTTATCTATTTGCTCGACTGTCGTACTTGATGAGGCCACTTCTTTTTATCTTATTTAATTTTGTTTGTAAATAGAACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTT</genome_strand>
        <mrna_strand>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA........................................................................................................................................AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT....................................................................GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAA............................................................................................................................................................................................................................................................................................AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248182" ref_strand="+" ref_description="SGN-E248182 [cLEF-55-G4]">
      <seq>gtcaccctgaattttcaacaatgagacaacaggatgcgttagagttcttcctgcattttatagatcaagttgaacggataaactctgggacacctaattttgatccatcaaggagcttcaagtttggtattgaagaacgcctccaatgttcctcgggcaaagtcacttacaacagaaggaatgattatattctgtctcttaatattcctttggagagggctataaataaaaaagagctagcagaatttcaaaatttgaaggctgagagagctgcaggaggaaaagaactgtctgctgatgaaattgttcgccctagagtatcattgaaggattgcctagattgcttttcagctcctgaggaggtgcatgatttctacagcacagctttaacagctaggactacagcaatcaaaactgcaggtttgacttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="42230" stop="44153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42530" g_stop="42561" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42562" i_stop="42964" i_length="403">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42965" g_stop="43163" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="231" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43300" g_stop="43357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="289" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43426" g_stop="43548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="412" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43833" g_stop="43853" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="433" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E248182" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42530" e_stop="42561"/>
          <exon e_start="42965" e_stop="43163"/>
          <exon e_start="43300" e_stop="43357"/>
          <exon e_start="43426" e_stop="43548"/>
          <exon e_start="43833" e_stop="43853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCCTGAATTTTCAACAATGAGACAACAGGTACACTGACATTCTTGGAATCTTCTTCTCCCAGACAATTGCTTTTAATTTAAGATTATCAGATTCAAGCATAATAATGCTTCCCTCTACTAAAAGAACTCCAGCAATCTCTTGGTACTGTTTCACGCCTTAAAAATCCATTTGAGCTCTTTGTCCATCCAGCTGATGCAGTGTTTGGCTAAGTTGATACATACATCTACACTTGGATTTTCTTTTCAATATAGTCTGCCACTGATGTGTCAGAACTGTTGTGCATTGCTCAAAATAGTTTCATGGTCCCTTCACTTTATTGCCTTTAAACCCCAGTCGGTTATTTTTCTGTCTTGCGATCACGTTCATTGTTTGTTACCATTGCCATGGCTATTGTTATTCTTGTGGTTTATTGATAACAACGTATGTCTAGGATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAAGTGAGTTTTCTCTCTTATGTAATGCTTTTTTCTTGCCATTTTCTTATATATTGTTCATTGCAAAATTTCAGCTGAGCTTGATATTAATGAGTAATACTGCCTCCATTGTGATATTTTGTTTTGTATGAAATTCCAGAAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACTGTGAGTTTCAAGTGACCAATACATGCTTGCCTTTCATGTACTTCAGCTAAATGTATGGGTTTTTGCAGGTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAAGTAATCTTGTTATTCTCCTCTATGAAGTTATTTCTTCAATTTTTCTCTTGTTCTGCTTGTGGCATCTCAAATTTAGTTTACCTGCACCTCGTCTGTTGTTTTAGTAGGGCCTAATATCTCGTCTTTTTGGCTTCCATACTTCTTACACAGTTGGCTGTAGAAATTATAGATGTCTTGTCTGTCAGCAGTGGATGGCTAGTGTCTGTCAGCTTTATCTATTTGCTCGACTGTCGTACTTGATGAGGCCACTTCTTTTTATCTTATTTAATTTTGTTTGTAAATAGAACTGCAGGTTTGACTTCTTT</genome_strand>
        <mrna_strand>GTCACCCTGAATTTTCAACAATGAGACAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGTTAGAGTTCTTCCTGCATTTTATAGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA........................................................................................................................................AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT....................................................................GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAA............................................................................................................................................................................................................................................................................................AACTGCAGGTTTGACTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739452" ref_strand="+" ref_description="SGN-E739452 [LC17CB01]">
      <seq>ctctgggacacctaattttgatccatcaaggagcttcaagtttggtattgaagaacgcctccaatgttcctcgggcaaagtcacttacaacagaaggaatgattatattctgtctcttaatattcctttggagagggctataaataaaaaagagctagcagaatttcaaaatttgaaggctgagagagctgctggaggaaaagaactgtctgctgatgaaattgttcgccctagagtatcattgaaggattgcctagattgcttttcagctccggaggaggtgcatgatttctacagcacagctttaacggctaggactacagcaatcaaaactgcaggtttgacttcttttccagattatctggttttgcacatgcggaaatttgttatggaggaaggttgggtgccaaagaagcttgatgtctacatagatgtccctgaaaccattgacataagtagcatgcgaagtaatggtattcaaccaggagaagagctgttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacgatgatattgttgcacaacttgtttcaatgggatttaatctactccattgtcagaaggctgctatcaatacttccaacagtggagtagaggcagcaatggattggttacttaatcatatgaatgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgatattgatcaatctaaagttgatacgctggtttcatttggttttgaagagaaacttgcccataaggccctgaaggcatcgggaggtgatgttgaaaaagctactgaatggatattcagcagccctagtgccagtactgcagcagacatggatgttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="42715" stop="46064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43015" g_stop="43163" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43300" g_stop="43357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="207" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43426" g_stop="43548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="330" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43833" g_stop="43921" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44009" g_stop="44098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="509" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="680" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="799" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45686" g_stop="45764" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="878" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E739452" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43015" e_stop="43163"/>
          <exon e_start="43300" e_stop="43357"/>
          <exon e_start="43426" e_stop="43548"/>
          <exon e_start="43833" e_stop="43921"/>
          <exon e_start="44009" e_stop="44098"/>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAAGTGAGTTTTCTCTCTTATGTAATGCTTTTTTCTTGCCATTTTCTTATATATTGTTCATTGCAAAATTTCAGCTGAGCTTGATATTAATGAGTAATACTGCCTCCATTGTGATATTTTGTTTTGTATGAAATTCCAGAAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACTGTGAGTTTCAAGTGACCAATACATGCTTGCCTTTCATGTACTTCAGCTAAATGTATGGGTTTTTGCAGGTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAAGTAATCTTGTTATTCTCCTCTATGAAGTTATTTCTTCAATTTTTCTCTTGTTCTGCTTGTGGCATCTCAAATTTAGTTTACCTGCACCTCGTCTGTTGTTTTAGTAGGGCCTAATATCTCGTCTTTTTGGCTTCCATACTTCTTACACAGTTGGCTGTAGAAATTATAGATGTCTTGTCTGTCAGCAGTGGATGGCTAGTGTCTGTCAGCTTTATCTATTTGCTCGACTGTCGTACTTGATGAGGCCACTTCTTTTTATCTTATTTAATTTTGTTTGTAAATAGAACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCGGTATGCTACTTTTTCTTCATCGATGTAATTCTAATGTGTAGTTTATCTTGTTATATTGCTAATCTTTTTCTCTGATGGTCCTTCTAGATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTGGTACGAATCTCCTTGTCTTTTACTAAATTCATAGTGATCTTGTAGATAATGTCTTGTCTTCCATTTCAGCCCAAATAGTACTCTATTGCAAAGAATAATATAAGCATGTCTATCTGGTCTTGTCGCAGAAGTTGTTTTCTGCCTTGCGTCCCTTTTCTAGCTACTCAATTTTTTTCAAGAATATTTGATTGTCACTCTTATATTTGAATAATGAGGACATGAGTGTGGCAAAAACCTTTTTGGAAATAAAAAATAGTTGTGTGGAATTCTTCTTGTAAAAAATTTTTGTCGTTGTTTTGGGTGGGGAGGACGTACCATATGAGCTGGGGAGACTTTTATGAGTCTCATTCTCCTTGGGTGTTTGAAGTTTGTGACTCTTTTCTTTTGTCTGTATTCACACATTGCTAAGTGGTCTATTTCTGAATCATAAGATTTGACCTTTAGCTTGCATTAGTTTCTCTCAACCAATCTGTTAATTGCTTAATCAGGTTGTGTCTGTTTAGATAAAGTTGAACATTCATTGGAACTTAGCTTATTTAGTTCGTCCGGTGATACATGTAAAAAATGATTTGGCATCTAATTTATTTTTTATTTTGACTCTGGTTTTGTTATGCGGTCAACTTGAAGACTTTCAATTATGTTGTAGTGTTTTGGAAGTAATATTTCTTCTGTTCTAGTTTGTCTATTGAATGGGAGTAGCAAAAGCCGACAGGATAGAGTTCTGTATGCATAGAGCCATATTTAACCGACAGTATATACCTCAGAAATTCGTAGTTCATGAAATAGATTCCAGTTGCTATTTAATCTAATTCCTGCTCAGGGAATAGTTTCTTTTAGTAAGTGAGTAATTGGTGTTGCTTCTCACTCTCCAGCTAATGTTTGTTCCAAATCTGGGGTATCTGAAAGCTAAGGATGTTGTCTTAACAGCTTTTTAGTGGGTGTGTGATCAATGATGATCAATGATCATCAGTTAATTAACATCAGAAGTTTTAGCAATAGGTGCTACTTGTATGCCAAGTTCCTTTAGGGTTTGAAGCTTTTGGGTCATGTTTTGCAAGTACTAAATTGCTGCTATGTTGGATTACTTGTCCATGAACAGCTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTA</genome_strand>
        <mrna_strand>CTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA........................................................................................................................................AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCTGGAGGAAAAGAACT....................................................................GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCGGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACGGCTAGGACTACAGCAATCAA............................................................................................................................................................................................................................................................................................AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTTG.......................................................................................ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTCCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTTGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287033" ref_strand="+" ref_description="SGN-E287033 [cLES-6-N13]">
      <seq>tagcatgcgaagtaatggtattcaaccaggagaagagctgttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacgatgatattgttgcacaacttgtttcaatgggatttaatctacttcattgtcagaaggctgctatcaatacttccaacagtggagtagaggcagcaatggattggttacttaatcatatgaatgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgatattgatcaatctaaagttgatacgctggtttcatttggtttcgaagagaaacttgcccataaggccctgaaggcatcgggaggtgatgttgaaaaagctactgaatggatattcagcagccctagtgccagtactgcagcagacatggatgttactaccagtagtggagctgcagttgataccttgatgcctgatggaggaggaaaatacaggctcctgggattcgtgagccacataggcacatctacccactgtggccattatgtcgctcatattaacaaagatggccggtgggtgattttcaacgatgaaaaagttggggtctcaaaaaacccccctatggatatgggatacctctacttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="43746" stop="47325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44046" g_stop="44098" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="224" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="343" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45686" g_stop="45812" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="470" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46864" g_stop="47025" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="632" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E287033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44046" e_stop="44098"/>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45812"/>
          <exon e_start="46864" e_stop="47025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTGGTACGAATCTCCTTGTCTTTTACTAAATTCATAGTGATCTTGTAGATAATGTCTTGTCTTCCATTTCAGCCCAAATAGTACTCTATTGCAAAGAATAATATAAGCATGTCTATCTGGTCTTGTCGCAGAAGTTGTTTTCTGCCTTGCGTCCCTTTTCTAGCTACTCAATTTTTTTCAAGAATATTTGATTGTCACTCTTATATTTGAATAATGAGGACATGAGTGTGGCAAAAACCTTTTTGGAAATAAAAAATAGTTGTGTGGAATTCTTCTTGTAAAAAATTTTTGTCGTTGTTTTGGGTGGGGAGGACGTACCATATGAGCTGGGGAGACTTTTATGAGTCTCATTCTCCTTGGGTGTTTGAAGTTTGTGACTCTTTTCTTTTGTCTGTATTCACACATTGCTAAGTGGTCTATTTCTGAATCATAAGATTTGACCTTTAGCTTGCATTAGTTTCTCTCAACCAATCTGTTAATTGCTTAATCAGGTTGTGTCTGTTTAGATAAAGTTGAACATTCATTGGAACTTAGCTTATTTAGTTCGTCCGGTGATACATGTAAAAAATGATTTGGCATCTAATTTATTTTTTATTTTGACTCTGGTTTTGTTATGCGGTCAACTTGAAGACTTTCAATTATGTTGTAGTGTTTTGGAAGTAATATTTCTTCTGTTCTAGTTTGTCTATTGAATGGGAGTAGCAAAAGCCGACAGGATAGAGTTCTGTATGCATAGAGCCATATTTAACCGACAGTATATACCTCAGAAATTCGTAGTTCATGAAATAGATTCCAGTTGCTATTTAATCTAATTCCTGCTCAGGGAATAGTTTCTTTTAGTAAGTGAGTAATTGGTGTTGCTTCTCACTCTCCAGCTAATGTTTGTTCCAAATCTGGGGTATCTGAAAGCTAAGGATGTTGTCTTAACAGCTTTTTAGTGGGTGTGTGATCAATGATGATCAATGATCATCAGTTAATTAACATCAGAAGTTTTAGCAATAGGTGCTACTTGTATGCCAAGTTCCTTTAGGGTTTGAAGCTTTTGGGTCATGTTTTGCAAGTACTAAATTGCTGCTATGTTGGATTACTTGTCCATGAACAGCTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAAGTAAGTTCCCTATCCTCTGGTTCTACTAGTTGTACAGCTTTGTTGCTTTTATTTGGAACTGATGATATATTCTTACCAAATCTGTGAGGCAGTGGACATTAGCCTTCTCTTAAGTGATGTAGGTGAGGAGCCTCTGTAGTGTACTGCTACAATATGTTTTTCTTTAGGCTCTCCATATTTCTGATTCTGCTTAATCAGCTTTGTTAAGGATTTTATATATAGAATGGTATGCTAGTTCTACTAAAGTTTTTCCGTTGAGCTTCCAATATTGGCTCACCTTCTCATGGGCTTAATCATCTTGGTAATGGATTTTAGAAGTGGAATGCTGTATTTACTGTCTAATTATTTTTTCCGTCATTCACACTCGAGTTTAGTTTCCTTCCGCTCTCCTTTCAAAATTCTTTACCACCACTTGTGTGGTTAGAAGTATGTTTATTTTTCTTCTCCTTTTTGTGATTTGTTAGCTGTTTCCCCTCTCTCCTCTAAGGGGCAACAATGGTTTCCAACTATTGCACCTCCAACTTACGGTAGATCATAACTCCATACCATGGTTTCTTACTTTCTGGTGGTTGGAAATGGTCAATATAGATGCCCCACGTTCTTTTCTTGATCTAAACTTCTAATTTCTTATCCGGTTGCTTTCACTAAAACCATTTTACTAATTTCTAATCCAGTTGCTTTCACTAAAATCATTTATCTTTTGAGGGCTGCAAATTAGTTTCAAAGCCAAATTATGGGTCCTGTTCTCTGGTTTTGCAATTTTGATATTTGAACTCTTTTTTAGAGAAAATCCATCAGTATTTGTTTGAATCACTTCATATATTCGGAACGTTTAAGAGCAAGGACTATTGGAACTTGACCTAACTAATCTAAAGTTTTAGGATGATAGAAAGTTCCCTACATCCCTTTAAAAGCGTTTTAGTACTTCAATTTTATTATGAATTTCATTCAATGCATCACAGTCCTTGATAGTGAGATTTGGGTTTACTTCTATATTCTTTTATGCCCACTTGAGTCTTGACCCAAGTGTATCTTTTTGGATAATTAACAGAATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</genome_strand>
        <mrna_strand>TAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268647" ref_strand="+" ref_description="SGN-E268647 [cLEM-9-G15]">
      <seq>ttgcctgacagtgctgcaggggatggtgagcagtcaataaagcttctggctgacgatgatattgttgcacaacttgtttcaatgggatttaatctacttcattgtcagaaggctgctatcaatacttccaacagtggagtagatgcagcaatggattggttacttaatcatatgaatgatccagatattgatgctcctatatcagaaaacgtgcaaaatcctgatattgatcaatctaaagctgatacgctggtttcatttggtttcgaagagaaacttgcccataaggccctgaaggcatcgggaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="44884" stop="45885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45198" g_stop="45368" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="184" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90">
            <donor d_prob="0.480" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45459" g_stop="45577" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="303" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45686" g_stop="45694" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="312" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E268647" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45198" e_stop="45368"/>
          <exon e_start="45459" e_stop="45577"/>
          <exon e_start="45686" e_stop="45694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAGGTAGTTTTAATGTTTGCTTTCAAGCAGGGTTTACTCATATTTCTCGCCATAACTAGATACAGGGTAATTTGATGCATATTTTTTTTCCAGATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCGGTAAATATCTCACTTTTACTGGCGTTTACTATTTCACTGTGGGGTTCCTTGCTATTCACTGCCAATAGCATAATGTTTGTTCATTCCTTGTTTCTATCTGCTCATCAGGGAGGTGAT</genome_strand>
        <mrna_strand>CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGATGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG..........................................................................................ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGCTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG............................................................................................................GGAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256377" ref_strand="+" ref_description="SGN-E256377 [cLEG-38-C13]">
      <seq>ttaattctaccaaaaaaaaaaatgaatgcagcagcagcaaagggatcggcatggatcgtagcagcaagtattggagcagtagaagcattaaaagatcaaggatttgccagatggaattacgctttaagatcgattcatcactatgccaaatctaatttaattgcttctagtaatacctcggctcggagattctcgacggcttcggcgccggcggcgtcttctccggcagtcgtctccggtgagaagctgaggaaaacggaagagacgttgagtaaagttatagatctgaactgttggggtccaagcactgtcagattttagttttatatacttaaatttggtatatgatctattaatgaaaagagtaatagagatcaattttgaaaatttactcttgtttatatttgaatatttatggaacaaaacacattttatatacaattatcactcaattataggaatggaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="50098" stop="51166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50398" g_stop="50866" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E256377" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50398" e_stop="50866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGTTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGTAATGTAATAT</genome_strand>
        <mrna_strand>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGGTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGGAATGGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365671" ref_strand="+" ref_description="SGN-E365671 [cLPT-8-E3]">
      <seq>gaggaaagagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgtaacttgtcgtcggaaaactcgactagattccggccaaaactccgttctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctctggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55327" stop="56509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55624" g_stop="55993" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="441" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E365671" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55624" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG</genome_strand>
        <mrna_strand>GAGGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGTAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTTCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTCTGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697191" ref_strand="+" ref_description="SGN-E697191 [FA01AD04]">
      <seq>gtgaaagagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccgtctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55325" stop="57198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55625" g_stop="55993" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="440" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56898" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="473" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E697191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55625" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATG</genome_strand>
        <mrna_strand>GTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGTCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314162" ref_strand="+" ref_description="SGN-E314162 [cTOA-21-O4]">
      <seq>aagagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatgcgacctcccggaggcattctcgaacgcggtgaaagtgttattgccactgtcttcaagtttgtggagcaccctgagaacacgaaaagcctgtggaccaaaagagcaaagttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55329" stop="57412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55629" g_stop="55993" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56947" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="518" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57046" g_stop="57112" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="584" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E314162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55629" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56947"/>
          <exon e_start="57046" e_stop="57112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTGGTAATTGGTTTTCCTACATTTTGTTGTTTCCACTATTCCTATTCTTTTTTTAAATGAAAAATATCAACTTAGATTTTGATTGTGTGTCTAAATGGTAGTCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTT</genome_strand>
        <mrna_strand>AAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACGCGGTGAAAGTGTTATTGCCACTG..................................................................................................TCTTCAAGTTTGTGGAGCACCCTGAGAAC-ACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395401" ref_strand="+" ref_description="SGN-E395401 [TUS-16-E22]">
      <seq>agagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatgcgacctcccggaggcattctcgaacccggtgaaagtgttattgccactgtcttcaagtttgtggagcaccctgagaacaacgaaaagcctgtggaccaaaagagcaaagttaagttcaagatcataagcttgaaggtgaaagaaggtgtagattacgtacctgagttgtttgaagaacaaaaggatcacgtgactattgaacgtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55330" stop="58631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55630" g_stop="55993" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="435" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56947" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="517" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57046" g_stop="57164" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="636" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57165" i_stop="58291" i_length="1127">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58292" g_stop="58331" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="676" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E395401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55630" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56947"/>
          <exon e_start="57046" e_stop="57164"/>
          <exon e_start="58292" e_stop="58331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTGGTAATTGGTTTTCCTACATTTTGTTGTTTCCACTATTCCTATTCTTTTTTTAAATGAAAAATATCAACTTAGATTTTGATTGTGTGTCTAAATGGTAGTCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTGGTGAGTAACTGAACTTCCTAGGTCTTCTAAAAGAGGCAACTTTTGTATTTGCAGCAATTTTTGACCAGAAAGGAAGTTTAGGGTATCATGCTTCTTCAGCTTTATACTTGTCATTTGAGCAACACATCAATTTTCTTTCTGATGATTTCATGCTCTTTAACAAAACATATTGAAGGGTTAAAGGTGTTGCTGACTTGTCAGGATTCCGGACAACTTTTTTTTTGGGTCCTTTTTTGTTCTGAAAGTCACGAGTTCATTATTTGTCTATTCAGGATAGACCCTGTCCTATCCACCTGAACATATTTATGAAAATCAGCTAGGATTATAATTTTTACTGCTTATATGAATAGAGCATTTTGTGATAAGACGTGGGTAAATGAGGGGCTCTATCATGGGTCAGGCATCATTTGAAATTACATCTTCTTTGCATGCTCCTGTCTGGATACCTTTGCTATGTGTGACATAGAAGAAGCACTTTCCAGTAAGCTTTGACTAAGAAAGTATATTTTAGCTGATTCTCGTCCTTTGTAAAGTAGCATCAAACATTAGATAAGTTGCTGTTGGCATGTTCAGAGAAAAGAACTATTGAATTTTACAGAGATGTGTTATATAAAAATCCACTTTACATGTGGAGGCTTCTGCTTTCATTCACAAACTGGATTTTATGACAAAATATTTTTCCGTATTGTATATATCAGTTGGAGTATCCAGTAAAAGTAGAGCATAGACTTTGAATAGAGGAAGCTGTCGAGATCAGGTGTCTTTTTACAATGTAGCCATGACCATTTGCTTTTACCTGCAACCTCCATGTTTGAAATGATCGTCTCTTTTTTTGTATCAAATCTAGGAGCATCAAGTGTCATACATAATCCATTTCATCTTGTCCTGTCTTCGACAAAGTCAGGATTACAAAAGACTCATTTCTTTCATCATCATCCTGTATTCCTTGGAGGGAGGTGTTGGTGTAAACATACAGAAAGTGATTGTCATTGTGAGCCTTGTGCCTCGGTTGTCATTGTGTGTGAAATCTGATGTGTAACTAAAGAATATAAGCCTATAGCGTGACTCAAAGTTTGTTGTCAATGAATCCAGTAGTGTTATAACCCTTTTTGTTCATGTGGATGCAGTTTGAAGAACAAAAGGATCACGTGACTATTGAACGTATCC</genome_strand>
        <mrna_strand>AGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTG..................................................................................................TCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAACAAAAGGATCACGTGACTATTGAACGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205816" ref_strand="+" ref_description="SGN-E205816 [cLEC-20-A12]">
      <seq>gagtttcctcactaagggacaattacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatgcgacctcccggaggcattctcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55331" stop="57224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55631" g_stop="55993" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="434" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56924" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="493" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E205816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55631" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACC</genome_strand>
        <mrna_strand>GAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343335" ref_strand="+" ref_description="SGN-E343335 [cTOF-17-N4]">
      <seq>ttacaagctgccctaatttttatcaccggaaaattgcaacttgtcgtcggaaaactcgactagattccggccaaaactccgtcctatggcaatcgccgaccaccacaagtcacataactcagacggaaagctctggaagctttgtcctctatggcaatcaggaactacgtcttcttcttcgtcgtctacacaaaatcttcactctcagaatcacagtcaccaaaacggcgtcggatctaacagctctcgtgcttctacgtctgttagctccgttgctagatcactgcttccggctagacgtaggcttcggctcgatccagctaacagtctctacttcccttatgaaccgggaaagcaggtgaagagtgctgtaaagattaagaacactagcaaatcttatgttgcatttaagtttcaaacgactgcaccaaagagctgctacatgcgacctcccggaggcattctcgaacccggtgaaagtgttattgccactgtcttcaagtttgtggagcaccctgagaacaacgaaaagcctgtggaccaaaagagcaaagttaagttcaagatcataagcttgaaggtgaaagaaggtgtagattacgtacctgagttgtttgaagaacaaaagatcacgtgactattgaacgtatctacgggntggtgttcttggacccagaacgaccttctncagtgctggataaactaaagcgtcagttggctgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="55353" stop="58789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55653" g_stop="55993" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56137" g_stop="56207" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56866" g_stop="56947" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="494" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57046" g_stop="57164" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="613" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57165" i_stop="58291" i_length="1127">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58292" g_stop="58369" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="690" r_length="77" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58453" g_stop="58489" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="727" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E343335" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55653" e_stop="55993"/>
          <exon e_start="56137" e_stop="56207"/>
          <exon e_start="56866" e_stop="56947"/>
          <exon e_start="57046" e_stop="57164"/>
          <exon e_start="58292" e_stop="58369"/>
          <exon e_start="58453" e_stop="58489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTTGTACGTCCGTTTACCTCGCCGTTGACTAAATTGACTTTATTTTAGTCAAAATTTTCCGATGTTTTTAGGTCTTTCTAATTTTTCGTGTTGAAAACTGGAGGAAAATGTGCTCTGTTTTTACCTGTTAATTTTTTTTTTTCCAGATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAGGTAATCTTTCCGTGTTAATTTGGCTTTGATTTCTCAAATGGTCAGTCATTTAATAATTATGATCTTAGAAAAGTCACTTTTTAGTTGATGACAATTGGAGCTTTTTGAGCTAGTAACTTTTAGTTGAGTAACTATTTGAGAAATCAACTATGACAATTTGTGCTAGTAAGGTCTGTAGTTTTCAGAAATCTATCCAAGTGTTTGCGTCTATCAGAAGAGAAAGGCATTGAGTAGGGGGTAACTGTCATTTATTTCCTAATGATTTTACCATTTCTGGATCTTCTGGATGGTTCATGATTTGAATCACTAGCATCTACTTTCAAATTGTTCCCATTTACTCTTTGTTGTAGCTAATTACCCAATCCCTACACAAATGAGTGTGTTTTATGCTTTTAGGGTCGAAAAGACTAAATTTAAAGAAGTTAGCTAATGAAAGCAAAATGAAGTTCATTGAGGTTTTAAGATTCTTCAAGTAAAAATACTTGCACTGGCGTTTCTGTTAATAATATAACGACCTCTTCTAGTTTGAGATTGAAACATAGAGCATAGTAGTAGTAGTTGTTGTGATATGGAGGTTTTGGTTATAAATGTCGCACAAAATAATTGGTGGTGTAAGTTCCTGATATTTCCTTTCCTGATTCTTCTTTTTGCATTTTAGTTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTGGTAATTGGTTTTCCTACATTTTGTTGTTTCCACTATTCCTATTCTTTTTTTAAATGAAAAATATCAACTTAGATTTTGATTGTGTGTCTAAATGGTAGTCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTGGTGAGTAACTGAACTTCCTAGGTCTTCTAAAAGAGGCAACTTTTGTATTTGCAGCAATTTTTGACCAGAAAGGAAGTTTAGGGTATCATGCTTCTTCAGCTTTATACTTGTCATTTGAGCAACACATCAATTTTCTTTCTGATGATTTCATGCTCTTTAACAAAACATATTGAAGGGTTAAAGGTGTTGCTGACTTGTCAGGATTCCGGACAACTTTTTTTTTGGGTCCTTTTTTGTTCTGAAAGTCACGAGTTCATTATTTGTCTATTCAGGATAGACCCTGTCCTATCCACCTGAACATATTTATGAAAATCAGCTAGGATTATAATTTTTACTGCTTATATGAATAGAGCATTTTGTGATAAGACGTGGGTAAATGAGGGGCTCTATCATGGGTCAGGCATCATTTGAAATTACATCTTCTTTGCATGCTCCTGTCTGGATACCTTTGCTATGTGTGACATAGAAGAAGCACTTTCCAGTAAGCTTTGACTAAGAAAGTATATTTTAGCTGATTCTCGTCCTTTGTAAAGTAGCATCAAACATTAGATAAGTTGCTGTTGGCATGTTCAGAGAAAAGAACTATTGAATTTTACAGAGATGTGTTATATAAAAATCCACTTTACATGTGGAGGCTTCTGCTTTCATTCACAAACTGGATTTTATGACAAAATATTTTTCCGTATTGTATATATCAGTTGGAGTATCCAGTAAAAGTAGAGCATAGACTTTGAATAGAGGAAGCTGTCGAGATCAGGTGTCTTTTTACAATGTAGCCATGACCATTTGCTTTTACCTGCAACCTCCATGTTTGAAATGATCGTCTCTTTTTTTGTATCAAATCTAGGAGCATCAAGTGTCATACATAATCCATTTCATCTTGTCCTGTCTTCGACAAAGTCAGGATTACAAAAGACTCATTTCTTTCATCATCATCCTGTATTCCTTGGAGGGAGGTGTTGGTGTAAACATACAGAAAGTGATTGTCATTGTGAGCCTTGTGCCTCGGTTGTCATTGTGTGTGAAATCTGATGTGTAACTAAAGAATATAAGCCTATAGCGTGACTCAAAGTTTGTTGTCAATGAATCCAGTAGTGTTATAACCCTTTTTGTTCATGTGGATGCAGTTTGAAGAACAAAAGGATCACGTGACTATTGAACGTATCCTACGGG-TGGTGTTCTTGGACCCAGAACGACCTTCTCCAGTAAGAATTAAACATGTTACTGTTTATCTACTTGTTCATTTACTCTGAATTCATTCTCCAACGAAATATCTTGATTGATTAAGGTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTG</genome_strand>
        <mrna_strand>TTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT...............................................................................................................................................ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTG..................................................................................................TCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAACAAAA-GATCACGTGACTATTGAACGTAT-CTACGGGNTGGTGTTCTTGGACCCAGAACGACCTTCTNCA...................................................................................GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351662" ref_strand="+" ref_description="SGN-E351662 [cTOS-8-K7]">
      <seq>acgtgactattgaacgtatcctacgggtggtgttcttggacccagaacgaccttctccagtgctggataaactaaagcgtcagttggctgaagctgaggcagcattagaatctcgcaagaaacctccagttgaaactggacctaaagttgtaggagaaggtctagtaatagatgaatggaaggaacgaagggagaagtatctcgctcggcagcaggttgaggctgttgattcagtgtaaagcaactagtggattttaattcaagttccttcttttgctataattgaaatgtcaagccacatccatccattttctgctttaattctttcgaaggatggtggaaaacggacagtgtggtccgtcttgtaaagaaagaataatcagtgggaggtttagtttcttcttcatggagtaaaagcttgttatgtaattgctttggttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="58011" stop="59227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58311" g_stop="58369" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58453" g_stop="58572" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58573" i_stop="58663" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58664" g_stop="58924" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="440" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="454"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E351662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58311" e_stop="58369"/>
          <exon e_start="58453" e_stop="58572"/>
          <exon e_start="58664" e_stop="58924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCAGTAAGAATTAAACATGTTACTGTTTATCTACTTGTTCATTTACTCTGAATTCATTCTCCAACGAAATATCTTGATTGATTAAGGTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGGGTAAGGCTATCTATCTCTGCATATAAAAGCATGTATGTTTCCAAGTTTGATTCCTCTTAACACTGTCTATCTGCTTGCTATTGTTCAACAGAAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</genome_strand>
        <mrna_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCA...................................................................................GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGG...........................................................................................AAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356733" ref_strand="+" ref_description="SGN-E356733 [cTOS-21-K14]">
      <seq>acgtgactattgaacgtatcctacgggtggtgttcttggacccagaacgaccttctccagtgctggataaactaaagcgtcagttggctgaagctgaggcagcattagaatctcgcaagaaacctccagttgaaactggacctaaagttgtaggagaaggtctagtaatagatgaatggaaggaacgaagggagaagtatctcgctcggcagcaggttgaggctgttgattcagtgtaaagcaactagtggattttaattcaagttccttcttttgctataattgaaatgtcaagccacatccatccattttctgctttaattctttcgaaggatggtggaaaacggacagtgtggtccgtcttgtaaagaaagaataatcagtgggaggtttagtttcttcttcatggagtaaaagcttgttatgtaattgctttggttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="58011" stop="59227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58311" g_stop="58369" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58453" g_stop="58572" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58573" i_stop="58663" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58664" g_stop="58924" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="440" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="454"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E356733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58311" e_stop="58369"/>
          <exon e_start="58453" e_stop="58572"/>
          <exon e_start="58664" e_stop="58924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCAGTAAGAATTAAACATGTTACTGTTTATCTACTTGTTCATTTACTCTGAATTCATTCTCCAACGAAATATCTTGATTGATTAAGGTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGGGTAAGGCTATCTATCTCTGCATATAAAAGCATGTATGTTTCCAAGTTTGATTCCTCTTAACACTGTCTATCTGCTTGCTATTGTTCAACAGAAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</genome_strand>
        <mrna_strand>ACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCA...................................................................................GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGG...........................................................................................AAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349934" ref_strand="+" ref_description="SGN-E349934 [cTOS-3-P11]">
      <seq>aagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatgtggcgtagcgctctttgtggaatctggctctcatcaaatatgtggatcacaaaactttaaattgccagaaaatctctgaattcttcgatgatatatcactgatgtaaactcttgatttgctggctataggttgaattgcttatagtgcacgtttctgattaaaatcaaatctgcaaaacattctatataccagcttgttccttgtgtatataggttgtgtgagactgttcatgttagattcttcatccttttttcttcttactgttcattctttttcttttttataaacggttggcatagtgattctttccctctactatgtataattggggattattagaaaatgcgggtacagatatattagtgtaaatgcttttcccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61821" stop="59333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61521" g_stop="61463" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="59627" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="728" r_length="669" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E349934" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61521" e_stop="61463"/>
          <exon e_start="60295" e_stop="59627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCAATTATGT</genome_strand>
        <mrna_strand>AAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCCTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGGTACAGATATATTAGTGTAAATGCTTTTCCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349082" ref_strand="+" ref_description="SGN-E349082 [cTOS-2-M10]">
      <seq>aagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatgtggcgtagcgctctttgtggaatctggctctcatcaaatatgtggatcacaaaactttaaattgccagaaaatctctgaattcttcgatgatatatcactgatgtaaactcttgatttgctggctataggttgaattgcttatagtgcacgtttctgattaaaatcaaatctgcaaaacattctatataccagcttgttccttgtgtatataggttgtgtgagactgttcatgttagattcttcatccttttttcttcttactgttcattctttttcttttttataaacggttggcatagggattctttccttctactatgtataattggggattattagaaaatgcggctacagatatattagtgtaaatgcttttcccccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61821" stop="59335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61521" g_stop="61463" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="59634" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="721" r_length="662" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E349082" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61521" e_stop="61463"/>
          <exon e_start="60295" e_stop="59634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCA</genome_strand>
        <mrna_strand>AAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGGGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229486" ref_strand="+" ref_description="SGN-E229486 [cLEL-4-H22](-)">
      <seq>tcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatgtggcgtagcgctctttgtggaatctggctctcatcaaatatgtggatcccaaaactttaaattgccagaaaatctctgaattcttcgatgatatatcactgatgtaaactcttgatttgctggctataggttgaaattgcttatagtgcacgtttctgattaaaatcaaatctgcaaaacattctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="60468" stop="59526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60168" g_stop="59829" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="374"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E229486" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60168" e_stop="59829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTG-AATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTAT</genome_strand>
        <mrna_strand>TCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCCCAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244532" ref_strand="+" ref_description="SGN-E244532 [cLED-38-O21]">
      <seq>gggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgagttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttgaatagcagcaaatgtggcgtaacgctctttgtggaatctggctctcatcaaatatgtggatcacaaaactttaaattgccaaaaaatctctgaattcttcgatgatatatcactgatgtaaactcttgatttgctggctataggttgaattgcttatagtgcacgtttctgattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61923" stop="59552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61624" g_stop="61463" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="59852" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="606" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E244532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61624" e_stop="61463"/>
          <exon e_start="60295" e_stop="59852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAA</genome_strand>
        <mrna_strand>GGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGAGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTGAATAGCAGCAAATGTGGCGTAACGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAAAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241112" ref_strand="+" ref_description="SGN-E241112 [cLED-26-O4]">
      <seq>ttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61917" stop="59713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61617" g_stop="61463" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60013" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="438" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E241112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61617" e_stop="61463"/>
          <exon e_start="60295" e_stop="60013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTG</genome_strand>
        <mrna_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238613" ref_strand="+" ref_description="SGN-E238613 [cLED-17-L22]">
      <seq>ttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaggtggtctggtgactgatatcgctgcaggagagaacaaaggaaaaatgcttgcgaatgactatgttgtcaggaggctggaaaagctttgctatgtaaaggatattactgcaaagaagacaatctcaggaactgtcaatttctctctttgggatggcttcaatagcagcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61917" stop="59715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61617" g_stop="61463" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60015" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="436" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E238613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61617" e_stop="61463"/>
          <exon e_start="60295" e_stop="60015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATG</genome_strand>
        <mrna_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368145" ref_strand="+" ref_description="SGN-E368145 [TUS-22-E22]">
      <seq>ttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtgtactatgatggtgccaacgtgatgattgctctgtacgaaggtggtctgccccccgatatcgctgcaggaccccccccaggaaaaatgcttgccactgactatgttgtcaggaggctggaaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="61917" stop="59801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61617" g_stop="61463" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60101" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="350" r_length="195" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E368145" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61617" e_stop="61463"/>
          <exon e_start="60295" e_stop="60101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTT</genome_strand>
        <mrna_strand>TTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGTACTATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGCCCCCCGATATCGCTGCAGGACCCCCCCCAGGAAAAATGCTTGCCACTGACTATGTTGTCAGGAGGCTGGAAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339034" ref_strand="+" ref_description="SGN-E339034 [cTOF-6-H5]">
      <seq>ttttctccactaaagctttaaccgaatcaccaggtttgagaccgactcgtcgggaaatggggcgcccgtctcttcacctgcttcggcaaaggcggttcttctcacttcttcttcaaaagactcccggctcgaataacaaggaccagtgcgacggcggatttgacggcggaggaagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctagaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacgaaaagtgtctggtgactgatatcgctgcaggagaagacaaaggaaaaatgcttgcgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62284" stop="59829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61984" g_stop="61463" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60129" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="696" r_length="167" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E339034" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61984" e_stop="61463"/>
          <exon e_start="60295" e_stop="60129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCATTAAAGCTTTAA-CGAATCACCAGGTTTGAGA-CGACTCGTCGGGAAATGGGGCG-CCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCA-TTCTTCTTCAAAAGA-TCCCGGCTCGAATAACAAGGA-CAGTGCGACGGCGGATTTGACGGCGGAGG-AGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGA</genome_strand>
        <mrna_strand>TTTTCTCCACTAAAGCTTTAACCGAATCACCAGGTTTGAGACCGACTCGTCGGGAAATGGGGCGCCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCACTTCTTCTTCAAAAGACTCCCGGCTCGAATAACAAGGACCAGTGCGACGGCGGATTTGACGGCGGAGGAAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAAAGTGTCTGGTGACTGATATCGCTGCAGGAGAAGACAAAGGAAAAATGCTTGCGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699932" ref_strand="+" ref_description="SGN-E699932 [FA11CE07]">
      <seq>ttttcatttctcatatttttttttttcttccgtttgaaaaccccataaaaacattgtttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgaaacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccagctcaaataacaacgacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggggggggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcaaggattgggaaaggcgattttaacctaaaaatgccggtgattttgttggcttatcatggggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctaaataccatgtttacgcctcaaattgtggttcagggaaaacctcaatgtgttgggaatgaacaaaatgcggttttctcttgtatcaaatctgctcccaaatttgctgctccttccttccaggcaacattcgagaggccaacaccaaagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62375" stop="59887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62075" g_stop="61463" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60187" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="720" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E699932" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62075" e_stop="61463"/>
          <exon e_start="60295" e_stop="60187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAG</genome_strand>
        <mrna_strand>TTTTCATTTCTCATAT-TTTTTTTTTTC-TTCCGTTTGAAAACCCCATAAAAACATTGTTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAAACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCAGCTCAAATAACAACGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGGGGGGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCAAGGATTGGGAAAGGCGATTTTAACCTAAAAATGCCGGTGATTTTGTTGGCTTATCATGGGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAAATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAAACCTCAATGTGTTGGGAATGAACAAAATGCGGTTTTCTCTTGTATCAAATCTGCTCCCAAATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAAAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704101" ref_strand="+" ref_description="SGN-E704101 [FA23BD11]">
      <seq>acctttttctctccaccatatcttcataatttttactattctaagctttctattttcatttctcatattttttttttcttccgtttgaaaaccccataaaaacattgtttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccagctcgaataacaacgacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctaaaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaaaagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgctcccagatttgctgctccttccttccaggcaacattcgagaggccaacaccagagtcattgcaagtatctctattaggatctctaaggagtaaggtggacaatgatggtgccaacgtgatgattgctctgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62427" stop="59891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62127" g_stop="61463" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60191" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="767" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E704101" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62127" e_stop="61463"/>
          <exon e_start="60295" e_stop="60191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTAC</genome_strand>
        <mrna_strand>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATTT-T-TTTTTT-CTTCCGTTTGAAAACCCCATAAAAACATTGTTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCAGCTCGAATAACAACGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAAAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAAAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCTCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211493" ref_strand="+" ref_description="SGN-E211493 [cLEC-67-N21]">
      <seq>tccaccatatcttcataatttttactattctaagctttctattttcatttctcatatatatattttttccttccgtttgaaaaccccataaaaacataggttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccggctcgaataacaaggacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctagaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctagataccatgtttacgcctcaaattgtggttcagggaagagctcaatgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgcccccagatttgctgctccttcccttcaggcaacattcgagaaggccacaccagagtcattgcaagtatctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62416" stop="59949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="61463" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60249" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="701" r_length="47" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E211493" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="61463"/>
          <exon e_start="60295" e_stop="60249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATT</genome_strand>
        <mrna_strand>TCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCCTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAAGGCCACACCAGAGTCATTGCAAGTATCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699067" ref_strand="+" ref_description="SGN-E699067 [FA08CB03]">
      <seq>cgtttctattttcatttctcatatttttttttccttccgtttgaaaaccccataaaaacattgtttaatttctgataaaatatattttcagaacaattttccccattaaagctttaacaaatcaccaggtttgaaacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaagggggttcttctcattcttcttcaaaaaatcccagctcaaataacaacgacagtgcgacggcggatttgaaggcggaggagcaaaaacggtgcgggccggtggtggtggacttattcccatcgcaaggctgcgccccctcacctgaagcggagctgttgttttcaaggatctggaaaaggcgattttaacctaaaaatgccggggattttgttggcttatccatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttatggacggttaaacaaaaagcgtatgtggagaccttaaatctaaataccatgtttacgcctcaaattgtggttcagggaagagctcactgtgttgggaatgaacaagatgcggttttctcttgtatcaaatctgctcccagatttgctgctccttccttccaggcaacattcgagaggcccacaccaaagtcattgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62381" stop="59960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62083" g_stop="61463" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60295" g_stop="60260" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="656" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E699067" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62083" e_stop="61463"/>
          <exon e_start="60295" e_stop="60260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGAT-TGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTAT-CATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAGGTTTGTTATTGTTGCAAATTGATCATAATAATACCCTATTTGATTGAATTTATGGTTACAATTATCTCTCTGTTTGATGAATTAATTGAAATATATGCATGATTGAAGCAATTGTGATTATTCAAAGGTCTCGTGTTCAAACTTTGTAAATGAAAAAATCTGGTATGGAGTGAACGTTCCCCTGTTTCATAGCCTTATGCATCGTGGGTTCAAAATAGTCTAGGTATGAAGCAGATAACTGACACTGAGTGTGAAACCAAAAAGAAGAGTATTCATGAGTAGCAGAAGGACTTAATTTGAATGGTGTTTGGTCTTCGAACGGGGTAGGGGATGTGGAAATGGGTGAGGGGATTACAAAGCAGGAGATCGAGCCATCACCAACAAGTTGAAAGTTCAGGGAGCCAACCAACTGAACTACTGAGATTTCCCCTGGATTTACTTGAGCTTATTATCTTTAAATGCAATTTAAACCAATTTGTCTTGGTTATTCCTTTTGATCAAAATGGGTACTGAGAATTCATATAGTCGATTTCAGTTAATGTGGGATTGATTGATTTGATTCCTCGTGATCACTTATGGTTGCACCAAGTTGCAATATACTGATCACTCGAAAAGAGAAGCTAAAATGAGCATTTTGGTTCTCTTAAAATGCAAATCATGTTTTACGTTACCAATTTCTGTTGGTTATTCCATCCATCCAAACAATCAAAATGGATACAGAGAATTGGTACGGCAGATTCCAATTCATGTGTGATTGATCAATTCATCATGATCTTGCACCAGGTTACAATGTACTGGAAATAATTAGCTAATATGTGGAATTCGAGATTTGATCATTTGGATCTGAAAAAGGTTCATGATATACCATTTCATACCATAATCAAGAAGATGTTAGCTATATTTTGAACTCAGCACATTATTCTGATTCTTTACTTCTTGAATTGGTAAAATTCAGTTCAACACTCTTCTGTTTTTGTTAGGAACTTGGGATTAGTTTTCTTTCTTAAACTGAACTCTGTGTACTTTGTTGATTATGAGTCGAGAATTCAGTATTTGGGAAAACTTAAGTTGTTTTCTCAATTATGTATCAAAAATACTGGAGTCAGTACGAACTAATGGTTGTATCTGGTCTATGCATATTGCTAATGCTGTGAAAAAACATTACAGGCAACATTCGAGAGGCCAACACCAGAGTCATTGCAA</genome_strand>
        <mrna_strand>CGTTTCTATTTTCATTTCTCATAT-T-T-TTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATTGTTTAATTTCTGATAAAATATATTTTCAGAACAATTTTCCCCATTAAAGCTTTAACAAATCACCAGGTTTGAAACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGGGGTTCTTCTCATTCTTCTTCAAAAAATCCCAGCTCAAATAACAACGACAGTGCGACGGCGGATTTGAAGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGACTTATTCCCATCGCAAGGCTGCGCCCCCTCACCTGAAGCGGAGCTGTTGTTTTCAAGGATCTGGAAAAGGCGATTTTAACCTAAAAATGCCGGGGATTTTGTTGGCTTATCCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAAATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCACTGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCTCCCAGATTTGCTGCTCCTTCCTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTCGAGAGGCCCACACCAAAGTCATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251670" ref_strand="+" ref_description="SGN-E251670 [cLEG-15-N15]">
      <seq>atcccccgggctgcaggatttttactattctaagctttctattttcatttctcatatatatattttttccttccgtttgaaaaccccataaaaacataggttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccggctcgaataacaaggacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctagaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaggatccgtttgggtcgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62406" stop="61324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62117" g_stop="61624" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E251670" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62117" e_stop="61624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTAT</genome_strand>
        <mrna_strand>ATCCCCC-GGGCTGCAGGATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214573" ref_strand="+" ref_description="SGN-E214573 [cLEC-79-D20]">
      <seq>tccaccatatcttcataatttttactattctaagctttctattttcatttctcatatatatattttttccttccgtttgaaaaccccataaaaacataggttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccggctcgaataacaaggacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaagcgattttaacctaaaaatgccggtgattttgttggcttatcatgtggattattgggattatatgggttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62416" stop="61347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="61646" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E214573" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="61646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAG</genome_strand>
        <mrna_strand>TCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAAGCGATTTTAACCTAAAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281057" ref_strand="+" ref_description="SGN-E281057 [cLER-7-N24]">
      <seq>ttttctctccaccatatcttcataatttttactattctaagctttctattttcatttctcatatatatattttttccttccgtttgaaaaccccataaaaacataggttaatttctgataaaatatattttcagtacaattttctccattaaagctttaacgaatcaccaggtttgagacgactcgtcgggaaatggggcgccgtctcttcacctgcttcggcaaaggcggttcttctcattcttcttcaaaagatcccggctcgaataacaaggacagtgcgacggcggatttgacggcggaggagcaaaaacggtgcgggccggtggtggtggagttattctcatcgcaaggctgcgccacctcacctgaagcggagctgttgttttcgaggattgggagaggcgattttaacctagaaatgccggtgattttgttggcttatcatgtggattattgggattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="62423" stop="61356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62123" g_stop="61656" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E281057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62123" e_stop="61656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATAT</genome_strand>
        <mrna_strand>TTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346749" ref_strand="+" ref_description="SGN-E346749 [cTOF-28-J8]">
      <seq>aaagacaaaaattatttttttattttttaaaaaaaaaattcaacactttttttttggaagatgttggaagggaaagcagtaattggagatacagatatgttgggaaccatgcaacaagatgcattagatttagctgcaaaggcacttgacttctttgatgtcactgaggccactgaaattgcacgttttcttaaaaaggaatttgatacaatgtatggaccagggtggcaatgcatagtagggacagattttggttcatttgtaacacattgttatggttgtttcatccatttctacattggcagccttgctattttgctcttcaagggctctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="63557" stop="65350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63857" g_stop="64053" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64054" i_stop="64736" i_length="683">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64737" g_stop="65058" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="520" r_length="322" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E346749" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63857" e_stop="64053"/>
          <exon e_start="64737" e_stop="65058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAAAATTATTTTTTTATTTTTTAAAAAA-AAATTCAACACTTTTTTTTTGGAAGATGTTGGAAGGGAAAGCAGTAATTGGAGATACAGATATGTTGGGAACCATGCAACAAGATGCATTAGATTTAGCTGCAAAGGCACTTGACTTCTTTGATGTCACTGAGGCCACTGAAATTGCACGTTTTCTTAAAAAGGTAACAAATCATAAATTGATCAATTGTTTTCCTTTTCTTCTTATATTAAGGTTTTATATTATGATATAATAGCGAGGGTCGAATTTAGAATTTAGATTTGATAAATATAATAAAAGTTTAGAGTATCAGTTGAATTCATACCTGGTGATCTACATCTGTTACATTATAATAATGAGATTCAAATATTATAGTGAATTTTTCAACTAAAAACTCGAACTTAGTCCTTTTTAGTACTGCGAGAAATTTTGTGTATAATAGCGAAAAATAATTTATTTATGAACATAATAAAGGGATTTAATTGTGGCTAGAAGCTAGTAATTCTAATAAGAGAATTCCGAATTATATAGAAGAATATTGTTATATATAGTCAAGATTTTGAACTTGTATTTCTCTATTATGTTTAAAAAGGATTCAAATATAAATATAATTACTTCATGATTGAATTCCAATTCCTTCCTTTTATGTAGTTTCGTCACTTCTTAAAAAAAAAGCGGAGATCTTGCTTTTATTTTTGTAGTAGATAGCTAATATGAGCATGGAAATATTTTCAAGAAATGAATGAGTCTGATAAATCCTTTAATTTTGTCATTTTGAGCTGATATACCCTTTGAAATTATATAATTTTTTTCCCCTCAAAATGAGTTAATTATGAATTACTAACTTTTTTTTATTTTTTGAATTAGGAATTTGATACAATGTATGGACCAGGGTGGCAATGCATAGTAGGGACAGATTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATA</genome_strand>
        <mrna_strand>AAAGACAAAAATTATTTTTTTATTTTTTAAAAAAAAAATTCAACACTTTTTTTTTGGAAGATGTTGGAAGGGAAAGCAGTAATTGGAGATACAGATATGTTGGGAACCATGCAACAAGATGCATTAGATTTAGCTGCAAAGGCACTTGACTTCTTTGATGTCACTGAGGCCACTGAAATTGCACGTTTTCTTAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGATACAATGTATGGACCAGGGTGGCAATGCATAGTAGGGACAGATTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393281" ref_strand="+" ref_description="SGN-E393281 [TUS-38-M10]">
      <seq>ttttggttcatttgtaacttattgttatggttgtttcatccatttctacattggcagccttgctattttgctcttcaagggctctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctataatttatatatgtcaattcaaagtctttccttttctcagcgctatattttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="64487" stop="65404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64787" g_stop="65105" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E393281" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64787" e_stop="65105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTTTCTTG</genome_strand>
        <mrna_strand>TTTTGGTTCATTTGTAACTTATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAATTTATATATGTCAATTCAAAGTCTTTCCTTTTCTCAGCGCTATATTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374460" ref_strand="+" ref_description="SGN-E374460 [TUS-38-L10](-)">
      <seq>ttttggttcatttgtaacacattgttatggttgtttcatccatttctacattggcagccttgctattttgctcttcaagggctctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctataagttatatatgtcaattcgatgtctttcctttttttggtgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="64487" stop="65394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64787" g_stop="65100" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E374460" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64787" e_stop="65100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTT</genome_strand>
        <mrna_strand>TTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297649" ref_strand="+" ref_description="SGN-E297649 [cLET-28-M8]">
      <seq>tttggttcatttgtaacacattgttatggttgtttcatccatttctacattggcagccttgctattttgctcttcaagggctctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctataagttatatatgtcaattcgatgtctttcctttttttggtgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="64488" stop="65394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64788" g_stop="65101" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E297649" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64788" e_stop="65101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTTT</genome_strand>
        <mrna_strand>TTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374461" ref_strand="+" ref_description="SGN-E374461 [TUS-38-L10]">
      <seq>tttggttcatttgtaacacattgttatggttgtttcatccatttctacattggcagccttgctattttgctcttcaagggctctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctataagttatatatgtcaattcgatgtctttcctttttttggtgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="64488" stop="65394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64788" g_stop="65101" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E374461" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64788" e_stop="65101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTTT</genome_strand>
        <mrna_strand>TTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393493" ref_strand="+" ref_description="SGN-E393493 [TUS-38-M10](-)">
      <seq>ctcttcaagggttctgctgccctagaggacccgaaagccgaggccgaagctgaccgattttccactctgcaggaaatagcatgaagtcacttcttcagtaattttatcgttgtcgacctatatatacactccaatgtacaatattaggaagttttagaagtcttaatttcacatttatattttcatatctataagttatatatgtcaattcgatgtctttcctatttttggtgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="64557" stop="65394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64857" g_stop="65101" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E393493" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64857" e_stop="65101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTTT</genome_strand>
        <mrna_strand>CTCTTCAAGGGTTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTATTTTTGGTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343669" ref_strand="+" ref_description="SGN-E343669 [cTOF-20-C10]">
      <seq>actcaacacttctcattggttgatacaaaaatttcaaaactatttcacaccacaattttataaaacacaagaaccagaattgttaaatggggcccctccagatatttttccaacagttattctttatatataagtatataaattgtgcaagaaacttagtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66284" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66584" g_stop="66901" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="480" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67843" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="675" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E343669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66584" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</genome_strand>
        <mrna_strand>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728089" ref_strand="+" ref_description="SGN-E728089 [LA16CF12]">
      <seq>acccaacaagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccactttgaaatctattggatcaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66459" stop="68400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66691" g_stop="66698" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66699" i_stop="66763" i_length="65">
            <donor d_prob="0.225" d_score="0.00"/>
            <acceptor a_prob="0.664" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="146" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="308" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67649" g_stop="68100" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="760" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E728089" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66691" e_stop="66698"/>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGA</genome_strand>
        <mrna_strand>ACCCAACA.................................................................AGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTTGAAATCTATTGGATCACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318797" ref_strand="+" ref_description="SGN-E318797 [cTOB-11-H7]">
      <seq>ttattctttatatataagtatataaattgtgcaagaaacttagtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66400" stop="68142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66700" g_stop="66901" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="364" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67842" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="558" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E318797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66700" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGG</genome_strand>
        <mrna_strand>TTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318935" ref_strand="+" ref_description="SGN-E318935 [cTOB-11-H8]">
      <seq>ttattctttatatataagtatataaattgtgcaagaaacttagtgagggccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaagcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66400" stop="68103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66700" g_stop="66901" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="364" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67803" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="519" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E318935" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66700" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCC</genome_strand>
        <mrna_strand>TTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGGCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAAGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732245" ref_strand="+" ref_description="SGN-E732245 [LB01CF06]">
      <seq>gtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaaaattattttacctacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66442" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66742" g_stop="66901" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="322" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68246" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="913" r_length="591" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="916" polyA_stop="932"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E732245" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66742" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAC</genome_strand>
        <mrna_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726891" ref_strand="+" ref_description="SGN-E726891 [LA13AE04]">
      <seq>gtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatccttcataaccaaatattttggcaatgaaaaattattttacctaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66442" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66742" g_stop="66901" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="322" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="893" r_length="571" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="920" polyA_stop="932"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E726891" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66742" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTCAATC---C-TTCATAA-CCAAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726140" ref_strand="+" ref_description="SGN-E726140 [LA10BG06]">
      <seq>gtgaggtccaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaccttgtccatgctcagagcattctagcagtattgggcttncaagtgtactaatgggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66442" stop="68166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66742" g_stop="66901" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="322" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67867" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="539" r_length="217" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E726140" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66742" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTT</genome_strand>
        <mrna_strand>GTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCC-AACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTNCAAG-TGTACTAATGGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735127" ref_strand="+" ref_description="SGN-E735127 [LB14CA10]">
      <seq>gtctaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccacctcatcattcataagcaaatatttggcaaatgaaaattattttacataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66447" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66747" g_stop="66901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68261" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="923" r_length="606" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E735127" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66747" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAACCAC</genome_strand>
        <mrna_strand>GTCTAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCAC-C--TCA-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTACATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729498" ref_strand="+" ref_description="SGN-E729498 [LA21BA07]">
      <seq>gtccaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttngaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaaatgaaaattattttacatacacttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66447" stop="68557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66747" g_stop="66901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68257" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="919" r_length="602" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="920" polyA_stop="936"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E729498" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66747" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAA</genome_strand>
        <mrna_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTNGAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA--TTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAAATGAAAATTATTTTACATACACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739281" ref_strand="+" ref_description="SGN-E739281 [LC16DC05]">
      <seq>gctttattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66452" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66747" g_stop="66901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68208" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="876" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E739281" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66747" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATT</genome_strand>
        <mrna_strand>GCTTTATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTCAATCATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728142" ref_strand="+" ref_description="SGN-E728142 [LA16DD05]">
      <seq>gtccttttaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctatttggatcacttgacnaccctgttgctaacaatgcatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66447" stop="68427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66747" g_stop="66901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68119" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="788" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E728142" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66747" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTA-TTGGATCACCTTGACAACCCTGTTGCTAACAAT</genome_strand>
        <mrna_strand>GTCCTTTTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTTGGATCA-CTTGACNACCCTGTTGCTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295267" ref_strand="+" ref_description="SGN-E295267 [cLET-20-D13]">
      <seq>gtccaattaattaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66447" stop="68024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66747" g_stop="66901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67724" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="393" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E295267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66747" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAG</genome_strand>
        <mrna_strand>GTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735405" ref_strand="+" ref_description="SGN-E735405 [LC01BH04]">
      <seq>cgaattaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtcgacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggccaatgaaaattattttacataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66451" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66749" g_stop="66901" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="315" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68257" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="917" r_length="602" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E735405" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66749" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAA</genome_strand>
        <mrna_strand>CGAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTCGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCCAATG-AAAATTATTTTACATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728170" ref_strand="+" ref_description="SGN-E728170 [LA16DG04]">
      <seq>cacttaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgancaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66450" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66750" g_stop="66901" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="314" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68208" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="873" r_length="559" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E728170" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66750" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATT</genome_strand>
        <mrna_strand>CACTTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGANCACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTCAATCATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737687" ref_strand="+" ref_description="SGN-E737687 [LC10DD12]">
      <seq>aattaattaaaagagaaattaagcaatagagaaaatgacaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgccactaagtttgttcctggatcttaaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66451" stop="68464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66751" g_stop="66901" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="313" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68164" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="829" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E737687" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66751" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTT</genome_strand>
        <mrna_strand>AATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGACAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCCACTAAGTTTGTTCCTGGATCTTAAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725766" ref_strand="+" ref_description="SGN-E725766 [LA05CE03]">
      <seq>attaattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcanagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaaagtgtactaatgggccttgtagaaggtttcagaattaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66452" stop="68193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66752" g_stop="66901" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="312" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67893" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="557" r_length="245" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E725766" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66752" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCT</genome_strand>
        <mrna_strand>ATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCANAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAAGTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733164" ref_strand="+" ref_description="SGN-E733164 [LB04AF01]">
      <seq>cgcattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatggggttacgcaactaagtttgttcctggatcttaaattttttcccatattgactttgtacctttgtaccactcaatcattcataagcaaatatttggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66456" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66753" g_stop="66901" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="311" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="882" r_length="571" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="885" polyA_stop="900"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E733164" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66753" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>CGCATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGGTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCCCATATTGACTTTGTACCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736781" ref_strand="+" ref_description="SGN-E736781 [LC07AF11]">
      <seq>aggattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactnaagttgttcctggatcttaaattttttcacatattgactttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66456" stop="68483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66753" g_stop="66901" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="311" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68183" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="845" r_length="534" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E736781" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66753" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTA</genome_strand>
        <mrna_strand>AGGATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTNAAGTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732198" ref_strand="+" ref_description="SGN-E732198 [LB01CB07]">
      <seq>caattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtacccactcatcattcataaagcaatatttggcaaatgaaaaatattttacatacacttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66455" stop="68557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66754" g_stop="66901" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="310" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68257" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="912" r_length="602" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="913" polyA_stop="924"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E732198" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66754" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAA</genome_strand>
        <mrna_strand>CAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTA-C-C-CACTCA-TCATTCATAAAGC-AATATTTGGCAAATGAAAAA-TATTTTACATACACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732369" ref_strand="+" ref_description="SGN-E732369 [LB01DH11]">
      <seq>catttaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattgnatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaaggttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatattttggcaaatgaaaattatttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66455" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66754" g_stop="66901" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="310" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="881" r_length="571" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="902" polyA_stop="913"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E732369" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66754" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>CATTTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGNATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGGTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730093" ref_strand="+" ref_description="SGN-E730093 [LA23AB09]">
      <seq>aattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataaccaaatatttggcaaatgaaaattattttacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66455" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66755" g_stop="66901" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="309" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68255" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="909" r_length="600" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E730093" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66755" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTG</genome_strand>
        <mrna_strand>AATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-CCAAATATTTGGCAAATG-AAAATTATTTTACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726378" ref_strand="+" ref_description="SGN-E726378 [LA11CF02]">
      <seq>aattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctgggatctaaattttttcacatattgactttgtagctttgtacccactcatcattcataagcaaatatttggcaaatgaaaattattttacataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66455" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66755" g_stop="66901" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="309" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68246" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="900" r_length="591" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="921"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E726378" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66755" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCT-GGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAC</genome_strand>
        <mrna_strand>AATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGGATC-TAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTA-C-C-CACTCA-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730467" ref_strand="+" ref_description="SGN-E730467 [LA24AH07]">
      <seq>cattaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66456" stop="68478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66755" g_stop="66901" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="309" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68178" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="838" r_length="529" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E730467" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66755" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACT</genome_strand>
        <mrna_strand>CATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734559" ref_strand="+" ref_description="SGN-E734559 [LB13AA01]">
      <seq>attaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaacctgttgctaacaatgcatgggtttacgcaactaagtttgttcctgggatctaaatttttcacatattgactttgtagctttgtacccactcatcattcataagcaaatatttgggcaaatgaaattattttacatacnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66456" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66756" g_stop="66901" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="308" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="878" r_length="570" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="904" polyA_stop="918"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E734559" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66756" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCT-GGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>ATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAAACCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGGATC-TAAA--TTTTTCACATATTGACTTTGTAGCTTTGTA-C-C-CACTCA-TCATTCATAA-GCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729757" ref_strand="+" ref_description="SGN-E729757 [LA22AA08]">
      <seq>attaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttnaatttttcacatattgactttgtagctttgtaccactcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66456" stop="68502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66756" g_stop="66901" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="308" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68202" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="860" r_length="552" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E729757" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66756" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCA</genome_strand>
        <mrna_strand>ATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTNAA--TTTTTCACATATTGACTTTGTAGCTTTGTACCACTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320443" ref_strand="+" ref_description="SGN-E320443 [cTOB-22-L23]">
      <seq>ttaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaagggcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="307" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68092" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="751" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E320443" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGAT</genome_strand>
        <mrna_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGGCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322532" ref_strand="+" ref_description="SGN-E322532 [cTOB-26-H21]">
      <seq>ttaaaagaaaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttggtaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatggggccttgtagaaggtttcagaattaatgggcnttcctggagttggtgaaggaacaatctctacccangtggacagtactttgacccattgggcctagcagatgacccaacnactttcgcggaaactcaggtcaaggaaatcagaacgaagattactatgttctccatgtttggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="307" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68043" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="700" r_length="393" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E322532" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAAT-GGGCCTTGTAGAAGGTTTCAGAATTAATGGGC-TTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTT</genome_strand>
        <mrna_strand>TTAAAAGAAAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGTACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCNTTCCTGGAGTTGGTGAAGG-AACAATCTCTACCCANGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACNACTTTCGCGGAAACTCAGGTCAAGGAAATC-AGAAC-GAAGATTA-CTATGTTCTCCATGTTTGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321650" ref_strand="+" ref_description="SGN-E321650 [cTOB-25-D6]">
      <seq>ttaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaaggttcagaattaatgggcttcctgggagtggtgaanggcacatctctacccangtggacagtactttgacccatgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="307" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67956" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="613" r_length="306" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E321650" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCT</genome_strand>
        <mrna_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAAGGTTCAGAATTAATGGGCTTCCTGGGAGTGGTGAANGGCAC-ATCTCTACCCANGTGGACAGTACTTTGACCCA-TGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366570" ref_strand="+" ref_description="SGN-E366570 [cLPT-13-G22]">
      <seq>ttaaaagagaaattaagcaatagagaaaatggcagcaacaggcagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggggcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="307" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67843" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="502" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E366570" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</genome_strand>
        <mrna_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGCAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGGGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320674" ref_strand="+" ref_description="SGN-E320674 [cTOB-27-C14]">
      <seq>ttaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagatcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaattgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67812" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="470" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E320674" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGT</genome_strand>
        <mrna_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGA-TCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAATTGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314748" ref_strand="+" ref_description="SGN-E314748 [cTOA-20-I2]">
      <seq>ttaaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggtactttcactttttcttttactagtagtaagtttgtttaaaataagtaacagacatttgcgtgactaaaattcatttttagctaaaaaagtttgaaaaataaaaaaattatctttttcgntttattttatgtgacactatttgacttgacacagtgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="67644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66757" g_stop="66901" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67344" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="469" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E314748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66757" e_stop="66901"/>
          <exon e_start="67021" e_stop="67344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTA</genome_strand>
        <mrna_strand>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGNTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740694" ref_strand="+" ref_description="SGN-E740694 [LC22CA07]">
      <seq>taaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaaaaatattttacatacactttgaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68254" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="905" r_length="599" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="911" polyA_stop="931"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E740694" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTT</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATGAAAAA-TATTTTACATACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732875" ref_strand="+" ref_description="SGN-E732875 [LB03BE07]">
      <seq>taaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatattttgcaaatgaaaattattttacatacaaaaaaaaaaaaaaaaaaaaaaccccgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68251" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="902" r_length="596" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="903" polyA_stop="924"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E732875" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACA</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTTGCAAATG-AAAATTATTTTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734565" ref_strand="+" ref_description="SGN-E734565 [LB13AA07]">
      <seq>taaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttccctggatcttaattttttcacatattgactttgtagctttgtaccactccatcattcataagcaaatatttggcaaatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68237" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="889" r_length="583" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E734565" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTT-CCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAA</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCCTGGATCTT-AA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC---CA-TCATTCATAA-GCAAATATTTGGCAAATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734814" ref_strand="+" ref_description="SGN-E734814 [LB13CF07]">
      <seq>taaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68234" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="886" r_length="580" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E734814" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAA</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729072" ref_strand="+" ref_description="SGN-E729072 [LA19DF04]">
      <seq>taaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaagggtcaggaaatcaagagcggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68080" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="738" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E729072" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAA</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGGTCAGGAAATCAAGAGCGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292352" ref_strand="+" ref_description="SGN-E292352 [cLET-1-G24]">
      <seq>taaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67954" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="612" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E292352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGC</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295361" ref_strand="+" ref_description="SGN-E295361 [cLET-23-G10]">
      <seq>taaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67902" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="560" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E295361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGT</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293144" ref_strand="+" ref_description="SGN-E293144 [cLET-12-L23]">
      <seq>taaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66758" g_stop="66901" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67861" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="519" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E293144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66758" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATG</genome_strand>
        <mrna_strand>TAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340457" ref_strand="+" ref_description="SGN-E340457 [cTOF-1-G10]">
      <seq>aaaagagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66459" stop="68381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66759" g_stop="66901" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="305" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68081" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="738" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E340457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66759" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAA</genome_strand>
        <mrna_strand>AAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366001" ref_strand="+" ref_description="SGN-E366001 [cLPT-11-L3]">
      <seq>aaaagagaaattaagcaatagagaaaatggcagcaacaggcagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggggcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66459" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66759" g_stop="66901" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="305" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67830" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="487" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E366001" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66759" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCT</genome_strand>
        <mrna_strand>AAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGCAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGGGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309483" ref_strand="+" ref_description="SGN-E309483 [cTOA-2-K6]">
      <seq>aaagagaaattatgcagtagagaaaatgtcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66460" stop="68072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66760" g_stop="66901" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="304" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67772" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="428" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E309483" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66760" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCA</genome_strand>
        <mrna_strand>AAAGAGAAATTATGCAGTAGAGAAAATGTCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345071" ref_strand="+" ref_description="SGN-E345071 [cTOF-22-C18]">
      <seq>agagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaatctattggatcaccttgacaaccctgttgctaacatgcatgggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66462" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66762" g_stop="66901" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="302" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68130" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="782" r_length="480" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E345071" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66762" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTA</genome_strand>
        <mrna_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTG-AAATCTATTGGATCACCTTGACAACCCTGTTGCTAAC-ATGCATGGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348909" ref_strand="+" ref_description="SGN-E348909 [cTOF-29-M11]">
      <seq>agagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaaacatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcgggactcaaggtcaagggaatcaagaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66462" stop="68311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66762" g_stop="66901" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="302" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68011" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="665" r_length="363" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E348909" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66762" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGA</genome_strand>
        <mrna_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAAACATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGGACTCAAGGTCAAGGGAATCAAGAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347459" ref_strand="+" ref_description="SGN-E347459 [cTOF-33-J17]">
      <seq>agagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66462" stop="68271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66762" g_stop="66901" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="302" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67971" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="625" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E347459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66762" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAAC</genome_strand>
        <mrna_strand>AGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730682" ref_strand="+" ref_description="SGN-E730682 [LA24DD10]">
      <seq>ccaattaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaaaattattttacataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66466" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="142" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="304" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68260" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="909" r_length="605" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E730682" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAACCA</genome_strand>
        <mrna_strand>TTAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTACATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733587" ref_strand="+" ref_description="SGN-E733587 [LB10BF09]">
      <seq>ccagtgaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaaaattattttacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66462" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="142" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="304" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68259" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="908" r_length="604" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E733587" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAACC</genome_strand>
        <mrna_strand>TGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730441" ref_strand="+" ref_description="SGN-E730441 [LA24AE12]">
      <seq>cctttaaggttaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaagcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacccaactaagtttgttcctggatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66457" stop="68457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="154" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="316" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68157" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="825" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E730441" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTA</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAAGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACCCAACTAAGTTTGTTCCTGGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727214" ref_strand="+" ref_description="SGN-E727214 [LA14AC06]">
      <seq>cccattagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggccttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctcccatgtttggattcttcgctcaagctattgtccccggcaaaggccccacttgaaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="144" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68086" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="747" r_length="441" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E727214" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGG-CTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCT-CCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGG-CCCACTTGAAAATCTA</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCCATGTTTGGATTCTTCGCTCAAGCTATTGTCCCCGGCAAAGGCCCCACTTGAAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284313" ref_strand="+" ref_description="SGN-E284313 [cLER-16-H16]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaagcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67982" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="634" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E284313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGG</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAAGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373269" ref_strand="+" ref_description="SGN-E373269 [TUS-31-J17]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67972" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="624" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E373269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACA</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725515" ref_strand="+" ref_description="SGN-E725515 [LA03DE09]">
      <seq>cggcacgaggtaaaagagaaattaagcaatagagaaaatggcaacaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcanagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66458" stop="68185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="154" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="316" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67885" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="553" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E725515" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATT</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAACAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCANAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292329" ref_strand="+" ref_description="SGN-E292329 [cLET-1-A6]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcattgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67872" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="524" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E292329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGA</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCATTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326424" ref_strand="+" ref_description="SGN-E326424 [cTOC-14-I14]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtaccttgggaccattttctgctcaaactccttcataccttgactggagaattccctggtgattaccggatgggatacctgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattaccaccagaagttcttgaaaaatgggtaaaagtggaccttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="304" r_length="166" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67843" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="501" r_length="197" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E326424" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTA-CTTGGGACCATTTTCTGCTCAAACTCCTTCATA-CTTGACTGGAGAATTCCCTGGTGATTA-CGGATGGGATA-CTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTA-CACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGA-CTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACCTTGGGACCATTTTCTGCTCAAACTCCTTCATACCTTGACTGGAGAATTCCCTGGTGATTACCGGATGGGATACCTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACCACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACCTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277887" ref_strand="-" ref_description="SGN-E277887 [cLEL-5-F23](-)">
      <seq>gcacgaggagaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcatntacaccagaagttcttgaaaaatgggtaaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66461" stop="68068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="146" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="308" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67768" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="430" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E277887" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277887" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCAT-TACACCAGAAGTTCTTGAAAAATGGGT-AAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATC</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATNTACACCAGAAGTTCTTGAAAAATGGGTAAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283130" ref_strand="+" ref_description="SGN-E283130 [cLER-17-O3]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67763" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="415" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E283130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCC</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279244" ref_strand="-" ref_description="SGN-E279244 [cLEL-4-O7](-)">
      <seq>gcacgaggagaaattaagcaatttagaaaatggcagcaacaggtagggcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66461" stop="68061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="146" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="308" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67761" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="421" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E279244" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGC</genome_strand>
        <mrna_strand>AGAAATTAAGCAATTTAGAAAATGGCAGCAACAGGTAGGGCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299305" ref_strand="+" ref_description="SGN-E299305 [cLET-43-P15]">
      <seq>agaaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattccccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66464" stop="68030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66764" g_stop="66901" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="300" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67730" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="382" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E299305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66764" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACT</genome_strand>
        <mrna_strand>AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCCCCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282754" ref_strand="+" ref_description="SGN-E282754 [cLER-15-P6]">
      <seq>aaattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66466" stop="68165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66766" g_stop="66901" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="298" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67865" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="515" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E282754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66766" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCC</genome_strand>
        <mrna_strand>AAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342415" ref_strand="+" ref_description="SGN-E342415 [cTOF-8-K17]">
      <seq>aattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattncttcgttcaagctattgtcaccggcaaaggcccacttgaaatctnattggatcaccttgacaaccctgttgctaacatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66467" stop="68424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66767" g_stop="66901" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="297" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68116" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="766" r_length="469" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E342415" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66767" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATT-CTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAAC</genome_strand>
        <mrna_strand>AATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTNCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAATCTNATTGGATCACCTTGACAACCCTGTTGCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315836" ref_strand="+" ref_description="SGN-E315836 [cTOA-26-C15]">
      <seq>aattaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccangtggacagtactttgacccattgggcctagcagatngacccacaactttcgcggaactcaaggtcaaggaaatcaagaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66467" stop="68311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66767" g_stop="66901" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="297" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68011" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="660" r_length="363" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E315836" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66767" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGA</genome_strand>
        <mrna_strand>AATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCANGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATNGACCCACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343155" ref_strand="+" ref_description="SGN-E343155 [cTOF-17-B3]">
      <seq>attaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaacaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtaccttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66468" stop="67461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66768" g_stop="66901" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67161" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="276" r_length="142" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E343155" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66768" e_stop="66901"/>
          <exon e_start="67021" e_stop="67161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTA-CTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTT</genome_strand>
        <mrna_strand>ATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGAACAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACCTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340800" ref_strand="+" ref_description="SGN-E340800 [cTOF-5-M22]">
      <seq>ttaagcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctncatgtttggattcttcgttcaagctattgtcaccgggcaaggcccacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66469" stop="68380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66769" g_stop="66901" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="295" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68080" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="727" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E340800" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66769" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAA</genome_strand>
        <mrna_strand>TTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTNCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGGCAAGGCCCACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344092" ref_strand="+" ref_description="SGN-E344092 [cTOF-12-P18]">
      <seq>agcaatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggatttcttcgttcaagctattgtcaccggcaaaggcccacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66472" stop="68381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66772" g_stop="66901" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="292" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68081" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="726" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E344092" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66772" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGA-TTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAA</genome_strand>
        <mrna_strand>AGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203166" ref_strand="+" ref_description="SGN-E203166 [cLEB-3-F20]">
      <seq>gcacgaggaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66473" stop="68056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66773" g_stop="66901" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67756" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="398" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E203166" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66773" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCT</genome_strand>
        <mrna_strand>GCACGAG-GAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291263" ref_strand="+" ref_description="SGN-E291263 [cLET-2-P18]">
      <seq>caatagagaatatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgcttaccccctaagggatataggtcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgcttatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaaggtcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcattgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctaacagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66474" stop="68139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66774" g_stop="66901" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67839" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="481" r_length="191" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E291263" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66774" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATT</genome_strand>
        <mrna_strand>CAATAGAGAATATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTTACCCCCTAAGGGATATAGGTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTTATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGGTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCATTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAACAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296064" ref_strand="+" ref_description="SGN-E296064 [cLET-24-C15]">
      <seq>caatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccataccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66474" stop="68118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66774" g_stop="66901" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67818" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="460" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E296064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66774" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGC</genome_strand>
        <mrna_strand>CAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCATACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298955" ref_strand="+" ref_description="SGN-E298955 [cLET-42-G4]">
      <seq>caatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66474" stop="68028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66774" g_stop="66901" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67728" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="370" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E298955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66774" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGA</genome_strand>
        <mrna_strand>CAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320787" ref_strand="+" ref_description="SGN-E320787 [cTOB-27-A24]">
      <seq>aatagagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatncagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggccacttgaaaatctattggatcaccttgaaaccctgttgctaacaatgcatgggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66475" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66775" g_stop="66901" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="289" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68130" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="769" r_length="480" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E320787" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66775" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTA</genome_strand>
        <mrna_strand>AATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATNCAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGG-CCACTTGAAAATCTATTGGATCACCTTGA-AACCCTGTTGCTAACAATGCATGGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347715" ref_strand="+" ref_description="SGN-E347715 [cTOF-26-K23]">
      <seq>gagaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggctttcaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66479" stop="68204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66779" g_stop="66901" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="285" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67904" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="541" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E347715" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66779" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTG</genome_strand>
        <mrna_strand>GAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTTCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345156" ref_strand="+" ref_description="SGN-E345156 [cTOF-22-J8]">
      <seq>agaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacatgcatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66480" stop="68428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66780" g_stop="66901" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68128" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="763" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E345156" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66780" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTT</genome_strand>
        <mrna_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAAC-ATGCATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346351" ref_strand="+" ref_description="SGN-E346351 [cTOF-23-C19]">
      <seq>agaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaactnattggatcaccttgacaaccctgttgctaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66480" stop="68417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66780" g_stop="66901" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68117" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="753" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E346351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66780" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACA</genome_strand>
        <mrna_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAACTNATTGGATCACCTTGACAACCCTGTTGCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292511" ref_strand="+" ref_description="SGN-E292511 [cLET-16-H24]">
      <seq>agaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66480" stop="68248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66780" g_stop="66901" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67948" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="584" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E292511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66780" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCA</genome_strand>
        <mrna_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292975" ref_strand="+" ref_description="SGN-E292975 [cLET-12-M21]">
      <seq>agaaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66480" stop="68144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66780" g_stop="66901" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67844" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="480" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E292975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66780" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCT</genome_strand>
        <mrna_strand>AGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282804" ref_strand="+" ref_description="SGN-E282804 [cLER-15-C20]">
      <seq>aaaatggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccacaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66482" stop="68162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66782" g_stop="66901" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="282" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67862" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="496" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E282804" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66782" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGG</genome_strand>
        <mrna_strand>AAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCACAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746578" ref_strand="+" ref_description="SGN-E746578 [GI|47104172]">
      <seq>ggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66487" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66787" g_stop="66901" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="277" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68246" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="875" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="876" polyA_stop="890"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E746578" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66787" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAC</genome_strand>
        <mrna_strand>GGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393116" ref_strand="+" ref_description="SGN-E393116 [TUS-38-D17]">
      <seq>ggcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccacaaattcttgaaaaatgggtaaaagtgaacttcagaaaaccaatatggttcaaagctggatcccaaatcttcagtgaaggtgggctggactatttgggccccccataccttgtccttgctcataccactctaacactattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66487" stop="68144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66787" g_stop="66901" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="277" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67844" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="473" r_length="196" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E393116" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66787" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCT</genome_strand>
        <mrna_strand>GGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCACAAATTCTTGAAAAATGGGTAAAAGTGAACTTCAGAAAACCAATATGGTTCAAAGCTGGATCCCAAATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCCCCCCATACCTTGTCCTTGCTCATACCACTCTAACACTATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291492" ref_strand="+" ref_description="SGN-E291492 [cLET-2-L12]">
      <seq>gcagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66488" stop="67402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66788" g_stop="66901" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="196" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E291492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66788" e_stop="66901"/>
          <exon e_start="67021" e_stop="67102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAG</genome_strand>
        <mrna_strand>GCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321024" ref_strand="+" ref_description="SGN-E321024 [cTOB-13-B12]">
      <seq>cagcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatgtgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66489" stop="68248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66789" g_stop="66901" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="275" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67948" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="575" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E321024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66789" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCA</genome_strand>
        <mrna_strand>CAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATGTGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281018" ref_strand="+" ref_description="SGN-E281018 [cLER-7-N11]">
      <seq>agcaacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66490" stop="67403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66790" g_stop="66901" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67103" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="195" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E281018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66790" e_stop="66901"/>
          <exon e_start="67021" e_stop="67103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGA</genome_strand>
        <mrna_strand>AGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292917" ref_strand="+" ref_description="SGN-E292917 [cLET-11-D22]">
      <seq>caacaggtagctcagccacagttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccatatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66492" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66792" g_stop="66901" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="272" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="67830" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="454" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E292917" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66792" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCT</genome_strand>
        <mrna_strand>CAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCATATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320197" ref_strand="+" ref_description="SGN-E320197 [cTOB-21-K17]">
      <seq>ttgttagagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66513" stop="68322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66813" g_stop="66901" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="251" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68022" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="625" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E320197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66813" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTAT</genome_strand>
        <mrna_strand>TTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736524" ref_strand="+" ref_description="SGN-E736524 [LC06AD07]">
      <seq>gagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttggcaaatgaaaattattttacataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66519" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66819" g_stop="66901" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="245" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68246" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="836" r_length="591" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="837" polyA_stop="854"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E736524" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66819" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAC</genome_strand>
        <mrna_strand>GAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTGGCAAATG-AAAATTATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736818" ref_strand="+" ref_description="SGN-E736818 [LC07BE06]">
      <seq>gagcaactccatttttgggccagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66519" stop="68451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66819" g_stop="66901" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="245" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68151" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="748" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E736818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66819" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGG</genome_strand>
        <mrna_strand>GAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378227" ref_strand="+" ref_description="SGN-E378227 [TUS-45-A15]">
      <seq>catttttgggacagaccaaatatgctaaccccctaagggatatagttcctatgggctctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaactccttcatacttgactggacaattccctggtgattacggatgggatactgctggtttatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66528" stop="67447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66828" g_stop="66901" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67147" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="200" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E378227" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66828" e_stop="66901"/>
          <exon e_start="67021" e_stop="67147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTG</genome_strand>
        <mrna_strand>CATTTTTGGGACAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTC-AACTCCTTCATACTTGACTGGACAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730114" ref_strand="+" ref_description="SGN-E730114 [LA23AD12]">
      <seq>cccataggaactatatcccttagggggttagcatatttggtctgccagattcaccatgagtaatgatttgtggtatggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttanattttttcacatattgactttgtagctttgtaccactcaatcattcataagcaaatatttnggcaatgaaaattattttacataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66704" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66884" g_stop="66901" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="58" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67021" g_stop="67182" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="220" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67649" g_stop="68225" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="791" r_length="571" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="814" polyA_stop="831"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E730114" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66884" e_stop="66901"/>
          <exon e_start="67021" e_stop="67182"/>
          <exon e_start="67649" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCAGATTCACCATGGTAACTTTTTATTTTTCTTTTAAGTGTTTTTATAATTGAGTTCGATATTTAATATTATTGAACTTCAAATAAATTTATGATTTGTGTAAAAAGATACTGAACCTGTTATGTTTTATCAGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>TCTGCCAGATTCACCATG.......................................................................................................................AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTANA-TTTTTTCACATATTGACTTTGTAGCTTTGTACCACTC-A--A-TCATTCATAA-GCAAATATTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291441" ref_strand="+" ref_description="SGN-E291441 [cLET-2-O19]">
      <seq>ggacctgaccgtgtcaagtacttgggaccattttctgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66739" stop="68399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67039" g_stop="67182" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68099" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="595" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E291441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67039" e_stop="67182"/>
          <exon e_start="67649" e_stop="68099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTG</genome_strand>
        <mrna_strand>GGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346744" ref_strand="+" ref_description="SGN-E346744 [cTOF-28-H20]">
      <seq>taccttgggacaattttctgctcaaactccttcaaaccttgaccggagaattcccctggtgattaccggatgggaaacctggctgggtttattctggcttgatcccgaggcctttgctaagaacagagctcttgaggttatccatggggagatgggccatgcttggagctttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtctaatgggccttgtagaaggtttcagaataatgggcttcctggaagtggtgaaggcaacaatctctacccagggggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66756" stop="68308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67057" g_stop="67182" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68008" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="496" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E346744" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67057" e_stop="67182"/>
          <exon e_start="67649" e_stop="68008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TA-CTTGGGACCATTTTCTGCTCAAACTCCTTCATA-CTTGACTGGAGAATT-CCCTGGTGATTA-CGGATGGGATA-CT-GCT-GGTTTA-TCT-GC-TGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCAT-GGGAGATGGGCCATGCTTGGAGC-TTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAAC</genome_strand>
        <mrna_strand>TACCTTGGGACAATTTTCTGCTCAAACTCCTTCAAACCTTGACCGGAGAATTCCCCTGGTGATTACCGGATGGGAAACCTGGCTGGGTTTATTCTGGCTTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGGAGATGGGCCATGCTTGGAGCTTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGT-CTAATGGGCCTTGTAGAAGGTTTCAGAA-TAATGGGCTTCCTGGAAGTGGTGAAGGCAACAATCTCTACCCAGGGGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345391" ref_strand="+" ref_description="SGN-E345391 [cTOF-13-I24]">
      <seq>tgctcaaactccttcatacttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66774" stop="68535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67074" g_stop="67182" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68235" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="678" r_length="569" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E345391" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67074" e_stop="67182"/>
          <exon e_start="67649" e_stop="68235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAA</genome_strand>
        <mrna_strand>TGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGT-G--------G-A-C-------TTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286134" ref_strand="+" ref_description="SGN-E286134 [cLES-13-N23]">
      <seq>ttgactggagaattccctggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66793" stop="68358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67093" g_stop="67182" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68058" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="500" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E286134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67093" e_stop="67182"/>
          <exon e_start="67649" e_stop="68058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGT</genome_strand>
        <mrna_strand>TTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373268" ref_strand="+" ref_description="SGN-E373268 [TUS-31-J17](-)">
      <seq>ggtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66811" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67111" g_stop="67182" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68239" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="663" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="680"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E373268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67111" e_stop="67182"/>
          <exon e_start="67649" e_stop="68239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATT</genome_strand>
        <mrna_strand>GGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393365" ref_strand="+" ref_description="SGN-E393365 [TUS-38-D17](-)">
      <seq>gtgattacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66812" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67112" g_stop="67182" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68252" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="675" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E393365" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67112" e_stop="67182"/>
          <exon e_start="67649" e_stop="68252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACAC</genome_strand>
        <mrna_strand>GTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390672" ref_strand="+" ref_description="SGN-E390672 [TUS-46-D24]">
      <seq>ttacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66816" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67116" g_stop="67182" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68241" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="660" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E390672" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67116" e_stop="67182"/>
          <exon e_start="67649" e_stop="68241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTAT</genome_strand>
        <mrna_strand>TTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294290" ref_strand="-" ref_description="SGN-E294290 [cLET-14-D20](-)">
      <seq>tacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctggtgctaacaatgcatgggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66817" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67117" g_stop="67182" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68130" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="548" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E294290" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294290" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67117" e_stop="67182"/>
          <exon e_start="67649" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTA</genome_strand>
        <mrna_strand>TACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGGTGCTAACAATGCATGGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294289" ref_strand="+" ref_description="SGN-E294289 [cLET-14-D20]">
      <seq>tacggatgggatactgctggtttatctgctgatcccgaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctggtgctaacaatgcatgggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66817" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67117" g_stop="67182" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68130" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="548" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E294289" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67117" e_stop="67182"/>
          <exon e_start="67649" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTA</genome_strand>
        <mrna_strand>TACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGGTGCTAACAATGCATGGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318943" ref_strand="+" ref_description="SGN-E318943 [cTOB-11-N2]">
      <seq>ccgaggcctttgctaagatcagagctcttgatgttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctaacagtattgggcttgcaagttgtactaatgggccttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66851" stop="68170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67151" g_stop="67182" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="67870" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="254" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E318943" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67151" e_stop="67182"/>
          <exon e_start="67649" e_stop="67870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTA</genome_strand>
        <mrna_strand>CCGAGGCCTTTGCTAAGATCAGAGCTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAACAGTATTGGGCTTGCAAGTTGTACTAATGGGCCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346277" ref_strand="+" ref_description="SGN-E346277 [cTOF-23-H13]">
      <seq>gaggcctttgctaagaacagagctcttgaggttatccatgggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="66853" stop="68538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67153" g_stop="67182" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67649" g_stop="68238" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="620" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E346277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67153" e_stop="67182"/>
          <exon e_start="67649" e_stop="68238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTAAGAAGAAGAAAAAATGGTCTAAACCATTTCTTAGATATTGTGTAGTTGAAAATCATCTCATTAAGGATAAAAGAGGTATTTTAAAGCTAACTTGTTTCTAATTATAGTGATATTTTTTTTTAACGGATAAAAATGAAAGAATATCACATAAAATAGGACAGAGGAATATCATTTTTGTTGGGACAAAACAAAAAAGTGAAGCACGCCATAGAAAATGTACAGATTTGAGACTCGTAACGATTAATTTAGTATTAAGACATAGTTGATGGATTGATATGAATTGAAATTGTGTTAATTATTCTAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAT</genome_strand>
        <mrna_strand>GAGGCCTTTGCTAAGAACAGAGCTCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343368" ref_strand="+" ref_description="SGN-E343368 [cTOF-19-O17]">
      <seq>ggagatgggccatgcttggagcttttggttgcattacaccagaagttcttgaaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67359" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67659" g_stop="68225" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="593"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E343368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67659" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>GGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348112" ref_strand="+" ref_description="SGN-E348112 [cTOF-31-L22]">
      <seq>tttggttgcattaacncgaagttcttgaaaaatggggtaaaagtggaccttcaaagaccagtatggttcaaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcanatatttggcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67382" stop="68530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67682" g_stop="68225" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E348112" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67682" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTGCATTACACCAGAAGTTCTTGAAAAAT-GGGTAAAAGTGGA-CTTCAAAGAACCAGTATGGTTC-AAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>TTTGGTTGCATTA-ACNCGAAGTTCTTGAAAAATGGGGTAAAAGTGGACCTTCAAAG-ACCAGTATGGTTCAAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCANATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291692" ref_strand="+" ref_description="SGN-E291692 [cLET-6-C16]">
      <seq>aaaaatgggtaaaagtggacttcaaagaaccagtatggttcaaagctggagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67410" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67710" g_stop="68242" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E291692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67710" e_stop="68242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATT</genome_strand>
        <mrna_strand>AAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222560" ref_strand="+" ref_description="SGN-E222560 [cLEL-16-M5](-)">
      <seq>gtatggttcaaagctgaagcccagatcttcagtgaaggtgggctggactatttgggcaacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcatacattcataatgcaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67442" stop="68524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67742" g_stop="68224" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E222560" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67742" e_stop="68224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTT</genome_strand>
        <mrna_strand>GTATGGTTCAAAGCTGAAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATACATTCATAATGCAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203167" ref_strand="+" ref_description="SGN-E203167 [cLEB-3-F20](-)">
      <seq>ttgggcaacccaaaccttgtccatgctcagagcattttagcagtattgggcttccaagttgtactaatgggccttgtggaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattatttaacatacacttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67493" stop="68557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67793" g_stop="68257" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="482"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E203167" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67793" e_stop="68257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAA</genome_strand>
        <mrna_strand>TTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTTTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTGGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290968" ref_strand="+" ref_description="SGN-E290968 [cLET-8-K24]">
      <seq>caacccaaaccttgtccatgctcagagcattctagcagtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgcaccactcaatcattcattcataatgcaaatatttggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67498" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67798" g_stop="68225" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="446"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E290968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67798" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>CAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGCACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222471" ref_strand="+" ref_description="SGN-E222471 [cLEL-16-M5](-)">
      <seq>agtattgggcttccaagttgtactaatgggccttgtagaaggtttcagaattaatggacttcctggagttggtgaaggcatacaattctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67534" stop="68524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67834" g_stop="68224" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E222471" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67834" e_stop="68224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCA-ACAA-TCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTT</genome_strand>
        <mrna_strand>AGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGACTTCCTGGAGTTGGTGAAGGCATACAATTCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218552" ref_strand="+" ref_description="SGN-E218552 [cLEL-18-E20](-)">
      <seq>gcttccaagttgtactaatgggcctgtagaaggtttcagaattaatgggcttcctggagttggtgaaggcaacaatctcccccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67542" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67842" g_stop="68225" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="407"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E218552" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67842" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>GCTTCCAAGTTGTACTAATGGGCC-TGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTC-CCCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229227" ref_strand="+" ref_description="SGN-E229227 [cLEL-29-D2](-)">
      <seq>aatgggccctgtaaaaggtttcaaaattaatgggcctcctggagttggtgaaggcaacaatctctacccaggtggacaggactttgaccccttgggcctagcaaatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaaactattgtccccggcaaaggcccccctgaaaatctattggatccccctgacaaccctggtgctaacaatgcatgggtttacgcaactaagtttggtcctggatcttaaatttttttcacaaaacgactttggaactttggaccccccaatcattcattcataatgcaaatatttggccaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67558" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67858" g_stop="68225" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="407"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E229227" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67858" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>AATGGGCCCTGTAAAAGGTTTCAAAATTAATGGGCCTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGGACTTTGACCCCTTGGGCCTAGCAAATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAACTATTGTCCCCGGCAAAGGCCCCCCTGAAAATCTATTGGATCCCCCTGACAACCCTGGTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGGTCCTGGATCTTAAATTTTTTTCACAAAACGACTTTGGAACTTTGGACCCCCCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287018" ref_strand="+" ref_description="SGN-E287018 [cLES-6-H11]">
      <seq>aattaatgggcttcctggagttggtgaaggcaacaatctctacccaggtggacagtactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67582" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67882" g_stop="68253" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E287018" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67882" e_stop="68253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACT</genome_strand>
        <mrna_strand>AATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390671" ref_strand="+" ref_description="SGN-E390671 [TUS-46-D24](-)">
      <seq>aaggcaacaatctctacccaggtggacagtacttngacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggatttttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67608" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67908" g_stop="68242" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E390671" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67908" e_stop="68242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATT</genome_strand>
        <mrna_strand>AAGGCAACAATCTCTACCCAGGTGGACAGTACTTNGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTTTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296598" ref_strand="+" ref_description="SGN-E296598 [cLET-39-O13]">
      <seq>tactttgacccattgggcctagcagatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67637" stop="68551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="68253" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E296598" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="68253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACT</genome_strand>
        <mrna_strand>TACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215818" ref_strand="+" ref_description="SGN-E215818 [cLEL-15-I7](-)">
      <seq>ccattgggcctagcaaatgacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttgaattcttcgttcaagctattgtcaccggcaaaggcccacttaaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggccaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67646" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67946" g_stop="68225" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="305"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E215818" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67946" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>CCATTGGGCCTAGCAAATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGAATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTAAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299472" ref_strand="+" ref_description="SGN-E299472 [cLET-43-D14]">
      <seq>cagattacccaacaactttcgcggaactcaaggtcaaggaaatcaagaacggaagattagctatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcaaatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67659" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67959" g_stop="68243" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E299472" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67959" e_stop="68243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTT</genome_strand>
        <mrna_strand>CAGATTACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299310" ref_strand="+" ref_description="SGN-E299310 [cLET-43-B22]">
      <seq>tacccaacatcttttgcggaatttattgtcaaagacatcaagaacgggagattagggatgttctccatgtttggattcttcgttcaagctattgtcaccggcaaaggcccacttgaaaatctattggatcaccttgacaaccctgttgctaacaatgcatgggtttacgcaactaagtttgttcctggatcttaaatttttttcacatatcgactttgtagctttgtaccactcaatcattcattcataatgcaaatatttggcatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="67665" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67964" g_stop="68225" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="280"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E299310" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67964" e_stop="68225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</genome_strand>
        <mrna_strand>TACCCAACATCTTTTGCGGAATTTATTGTCAAAGACATCAAGAACGGGAGATTAGGGATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320096" ref_strand="+" ref_description="SGN-E320096 [cTOB-21-M18]">
      <seq>taaagtgatgtctaaagcgaaggttgctcgtgaaggaagtgatgagcaactggtggctgtcgtgcagatacaatcagctattcgtggttggttggctagaaggggtcttcgcaaactgcgaaattcaaaaatgttaaatgtagacaaacgaagatcaggcagaaagacggaggtcaaggagttgcctcgagaaatcctaccatctgttgtagaagacctcgaaagacgggttgcaaaggccgaggcaacaactgaacaaaaggaaaaggaaaatgctgccctgaaggaacaagtaaaccaattcgagaccagatgcttaaaatatgaggtcaagatgaggtcaatggaggagatgtggcaaaagcaaatgacatcattgcaggttagtctagctgcagccaggaacagtcttaccgctgctgacactactggtcgacctggaaagcttgaagggtccccatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="70908" stop="68864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70608" g_stop="70532" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70531" i_stop="70420" i_length="112">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70419" g_stop="70319" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="178" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70318" i_stop="69616" i_length="703">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69615" g_stop="69412" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="382" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69411" i_stop="69246" i_length="166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69245" g_stop="69164" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="464" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E320096" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70608" e_stop="70532"/>
          <exon e_start="70419" e_stop="70319"/>
          <exon e_start="69615" e_stop="69412"/>
          <exon e_start="69245" e_stop="69164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAGGTAAAAGTTATTTGCATGTTATCAAATATATGAAACCAAATATAGATTTACAGATCTTCTTTTTGGCAGCTGGTTATGAAACCAAATATATATTTACACATCTTTCTTGCAGCTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAGGTACGCTGTGATAAAGATTCTCACCTATCCTTACTAGTAGTCCTTGTGTTTCAATTTTTATTCCCTTAATATACCTTATAATGGAATAATTAGCATTTTAAAAGTTTTCCCAAAGATTTTATTGTAACTTTTCGTGTTTCTTCGTTCAGCATTGTAAAGTCTGCTTCCGGACTAATATCTTTAAGAATTTGGTGGCCTGTTTCATGAAGCCAATTTTAGGTATTTCAGTTTTTCTTCTTTTTTGGGGGCATAGTTAAAACAATTTTGGGTATGCAACTGCTTTTCTAATTTCAGGATTCAGTGGAATCTTTCTTCATTTTTTATTCTTTCTTTGGAAGATGAAATACTCTGGCATCTTGCCGAGTGTTTGATTATTGAGATTGAAAGAAAAGGTGGTGAGAGAATGAATAGTATGGCCGTTTTTGGTTTATACGTTAGTCCTTCCCCTCTCCCATGTAGAAGCTAAAAGGGGAAAGGGAAAGGACAGTTGGTGAAGAATCACTGATGGATAAATCAGGATAATGGCATCATTTATCATGCCTTCTCCTTTTCCTTATTTCTTATTGCACAATGGCTAGTCATTCAAAGTGAAGTCTGATTTTAATTTAAATGTGAACAGTTGAGGCAGCAATGCAGTCTTTGATATTACTACTGACTGCTTGAGAATCTTTAGTAGTAAGTTTGAATTATTTTGTGCAAGCAGGAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAGAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAGGTGAGTAAGCTGCAATATGATCCTAGATAGTTCATTTTCTCTAGTTTTTGGTATCCGTAGTTCTATGAATTCTCTACTGATACTGCTGATGCTTGAAGTTGAGTTTTTACTTGTTAACTCATATTTTATGAATTTACAAGGTAATTGATTGCTTTGTTAAAAGCAGGTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGTTCCCCATCTC</genome_strand>
        <mrna_strand>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAG................................................................................................................CTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAAAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAG......................................................................................................................................................................GTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGGTCCCCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353907" ref_strand="+" ref_description="SGN-E353907 [cTOS-10-D15]">
      <seq>tggctatcctactaggttaacacatcaagaattcacaagcaggtacggcttccttctgccaaaggatagtgcatgccaagatcctttaagtatgtcagttgccattcttcatcaatttggtattcttccggaactgtaccaagttgggtataccaagttatatttccgatcaggacagattgcttcattggaggatgcaaggaaccaagttctgcaaggtactcttgagttgcagaagtgcttccgtggtcatcgtgctcgtcggcacttccatgaactgaaaggaggagtaatcatacttcaatcatgtaaagcagatccctttgcaactcgtctcttttcttcccttttttcgttgaatataatagaagatgatattcatgaagattgttgtgtctatcaggttggatgagtatttttccatttcaagactatattagatgtcttcaaagttttgagcacttggggatgccattcaagtggttttagaaaaagaaaaaacatacaacttttgtctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="72225" stop="70552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71925" g_stop="71884" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71883" i_stop="71802" i_length="82">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71801" g_stop="71666" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="178" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71665" i_stop="71202" i_length="464">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71201" g_stop="70852" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="528" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E353907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71925" e_stop="71884"/>
          <exon e_start="71801" e_stop="71666"/>
          <exon e_start="71201" e_stop="70852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAGGTGACATACACGATCCTTAGTTTGTTGCTGATTTGTTCTTTTGGTTGTTTGTCAACTTATATATATGATTGCGGTAATTTAGGTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAGGTGAATTCATGGTTTCTTGTTCTCTTGTGTGGATATGTTTACTTCTCAAAGAATTTATGTCATTTACTAAATCATCTAAAAGAAGCACCATAAATTTTGATTTTCTTCTAATCATTACTTCTATATAGTTGAACCAAATAATGATAAATGAAAAACATGTGGTGTGTCGATGTGCACGCTAGCTGGCCCAGACACCATAGTTATCTTGAAAAAATTGTGGTGTCTTCCAAACTGGTGGCACCATTTTGAGAAAAAAATCATATTTTTGGAGGCATATTTCTGTTTGGAGAAGGGTTTTGAGTGGTCAAACAATAAAAATGGCATAAGTTATGGTCTTATGGATATAACATATTCTCTGACATATACCCAATATGGGCTTCTAAGGAGACAATGGATACATCCTATTGAAGATTGGGTTTCCTTTTGTGTGCCTATATGTGAACTTCTGTCCCTCGTACATGTAGATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</genome_strand>
        <mrna_strand>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAG..................................................................................GTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541254" ref_strand="+" ref_description="SGN-E541254 [TUS-61-P5]">
      <seq>gtagctatggcgaagaacagaaacaagaagaaaaacggcctagctgccatggatgtctccactgaccagacggtcatggatgcccaagcgatggatacttcagaatcagctgctccaaaaccacatataggtggatcacttagaaagacgaagggagtacaaatgaaaaggacgaagaatgttaggaaaaagaaggccatggcaaaggctatttcaaaaagtgagaaattggaggaaagaatcactaggagtgaaagcaagatagagagaactaaaaatgccaaacagttatacgaatgaatggctgaatgatatattttttcccttttctgattacttatgaatgaaatgattttgatttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="83256" stop="86737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83556" g_stop="83643" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83644" i_stop="83746" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83747" g_stop="83801" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="143" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83802" i_stop="86214" i_length="2413">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86215" g_stop="86432" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="361" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="374"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E541254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83556" e_stop="83643"/>
          <exon e_start="83747" e_stop="83801"/>
          <exon e_start="86215" e_stop="86432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCAAGGTAATTGAGTAATTAACTACTGTAATTAAGTGTCTTCGTTATCATTCTATTAGAAAAATTTGTTAATTTCTGTCGATTTACATGTCTGTTTGCTTAAATTCAGCGATGGATACTTCAGAATCAGCTGCTCCAAAACCACATATAGGTGGATCACTTAGGTAACTTGTCTAATTTTCATAGTTTTATAAATACAGTATACTTAATGATTAGTGAAAGTGAAGAACTTATCCCCAAGTTGAGTTGAGGTGTTCTTTATTTGAGAATATTAGGAATGAGATGCTATGAAATTTTGTTTCTATTTTTATTCTACATTTTTGTTGAAATTTTAGGATGTATTTTGAATAACATAATTGTTAGAATGCAAGTTATGTGGCCAAATTCTTTTCTTTTTCGCAGTTGCTATTCAAATTGGTGTTATTTTTAGCTTTGTGCTTGCAATATATATTTTATTTTGTGGTTGCTATTATTTGAGAATTTCTCCTTTGTTTAACATGTTTAACATAGTAGGGGTCCAGTTTGAGCAGTTTCTATCCATCTGTTTTCCTAGACATTTTACTCCTCGAATGAAGTTTGATCCCATTAAATCTATGTCCTCAGCGAGCGCAACTAGGATTAGAAAACTCGATAGATACTTGCTTCATATATGCTCTATATGCATCTGACTCCGGATATTCTATCACTTTAATGAGGAAGTCTTGCCGACTTCCTGAATCCAGATTGACCAGTAGTCCACTTCATGCAGTACATCTTAAAAGTAGGTCTGGATAATATCATTTACCGAATGGTCAATGACTATTTGACATTAGTGATTTTCATTTTTTTTCACATACTATCACACTCATTAGTCATTACTCATATAATGAAGATCATAAATACTGAACCATCCTTGAGACTATTTGGAGAAAAAACTTTTTATCGAGTTAAGTTATATTCCTTCATAGGATTCTATTCTCCTGTGTTGTAACATATCAATAAGGATTGACCCAATTTAATGAGCAGTGCAAGGAAGGCGGAGAGTTTATAGATGGTAGACAGAGGCATCTGAGATGTTCTTGACCTTAAAAACTTGTAGTAGTATTTATATCAGTTTTTGTTTCTACTGTCATGTCGTAGTTTGTCCGTACATGTATTAGAACCAGTGTTGTGGACGGCGAGAGGCGACAAAAGGCGACAAGGGCCTGCCTCGCCACGCGGCGAGGCGAGCGGCGAGGCGCTTGCCTTTTTGAATAAAGGCGCCAATTAATACCAAAAATTAAAAATATTTAATTGCATATTTTATCCAAAGTCTTAATAGCAATAACACATATAAGCCCTTATTTCTTCTCTAATTTCCGACGGACAAGCGACACATTGTTTAACATTTTTGAAACCACCCACTAAATGTTGTTTGTGTCGAGTTATTCCACCATTGAAAGTACTCCCACAAAAGTTACAAGTGACCGAATCTTTCGTCGCTCCTTGAGTGCCATAATTCCATCCAATGTCCCTCTTTTTGCTAGCATCCGCCATTGATTATTAAATTCAATTAATTCGCTGTTTAGAAAAATTGGAATAAATAATTAGGAAAAGAATTTTTTTAAAAAAATTAACACTTTTGTTACACTTACACAAAGCAGTAAGCACTGCCTGACTGCTGCTTACCAAAAAAAAATAAAATGAAGAAGAAGAACAGAAAAAATAAGAACAGAAGAAGAAGTGAGAAAACATTACCTGAAAACCTGAAAACAGAGAGTGAGAGTCGCGAGGGTCGTCGGCGAGGGAGAAGAGACGCGACAGCGAGGGAGAGCGAGGGAGCAGAGACGCGACAGCGAGGAACAACGAGGGAGCAGCGACGCGATGGAGGAGAAGAGAAGAGTCAATCGATCGATCGAGAGAGTCGCGATGTGGAGGATTTCCGAAATTTTCANAAGTAAAAAAAAAAACCCTAATTTGGACTAATATTATTAAGTCAAAATTTTTTAATCAAAAAGGTGGCGCCTTTCGCTCGCCATTTCAGCGCCATAGATCGCCAAGAGCTCGCCTTTTTCTCCTCGCCTCGCCTCGCCAAAGAATGGCGAGCCACCCTCGCCTCGCCTTTCGCCTTTGGCGACGAGGCGAGCGCCATTCATAACACTGATTAGAACTTAGAAGTTAGTGGTTGGTTACAATCTATTTATGTATAGCCCATCCACCACAATACATCAACTGCCGGTCATCCCGATTTGCTCAATGTATAAGAAGCTCACACCTCTAACTTCCTCCCTTTATCCATGCTTGTCTAGCTCCAATGTCTTGAAGCAACCCACTAGCCGTCCATAATTGACTCAAACCAAACAATCCCCTTCATTTTAGTGTTACTCTTAGGGGCTGCAAATAAACTCTATGAGTTCTTGTAGAACCTTTTGTCAAATATATGAAATGTAAGTTAAATAAGGAGAGTGGCAAATAAAGCTCCTTCTTTCTGGGTTGCAGGCATGTTTACGCTTGAAAATCATGGTCTTCTTTATTATTCCCGTTCCTCCGATAACTTCCATCTCCCATCTTACAATTCCTCACTTTGTTTTTGCTAATGTTGGATGCTTGATATTGCAGAAAGACGAAGGGAGTACAAATGAAAAGGACGAAGAATGTTAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACTAGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGAATGGCTGAATGATATATTTTTTCCCTTTTCTGATTACTTATGAATGAAATGATTTTGATTT</genome_strand>
        <mrna_strand>GTAGCTATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCAAG.......................................................................................................CGATGGATACTTCAGAATCAGCTGCTCCAAAACCACATATAGGTGGATCACTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACGAAGGGAGTACAAATGAAAAGGACGAAGAATGTTAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACTAGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGAATGGCTGAATGATATATTTTTTCCCTTTTCTGATTACTTATGAATGAAATGATTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296221" ref_strand="+" ref_description="SGN-E296221 [cLET-24-K14]">
      <seq>tagctatggcgaagaacagaaacaagaagaaaaacggcctagctgccatggatgtctccactgaccagacggtcatggatgcccaagcgatggatacttcagaatcagctgctccaaaaccacatataggtggatcacttagaaagacgaagggagtacaaatgaaaaggacgaagaatgttaggaaaaagaaggccatggcaaaggctatttcaaaaagtgagaaattggaggaaagaatcactaggagtgaaagcaagatagagagaactaaaaatgccaaacagttatacgaatgaatggctgaatgatatattttttcccttttctgattacttatgaatgaaatgattttgatttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="83257" stop="86737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83557" g_stop="83643" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83644" i_stop="83746" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83747" g_stop="83801" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="142" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83802" i_stop="86214" i_length="2413">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86215" g_stop="86432" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="360" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E296221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83557" e_stop="83643"/>
          <exon e_start="83747" e_stop="83801"/>
          <exon e_start="86215" e_stop="86432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCAAGGTAATTGAGTAATTAACTACTGTAATTAAGTGTCTTCGTTATCATTCTATTAGAAAAATTTGTTAATTTCTGTCGATTTACATGTCTGTTTGCTTAAATTCAGCGATGGATACTTCAGAATCAGCTGCTCCAAAACCACATATAGGTGGATCACTTAGGTAACTTGTCTAATTTTCATAGTTTTATAAATACAGTATACTTAATGATTAGTGAAAGTGAAGAACTTATCCCCAAGTTGAGTTGAGGTGTTCTTTATTTGAGAATATTAGGAATGAGATGCTATGAAATTTTGTTTCTATTTTTATTCTACATTTTTGTTGAAATTTTAGGATGTATTTTGAATAACATAATTGTTAGAATGCAAGTTATGTGGCCAAATTCTTTTCTTTTTCGCAGTTGCTATTCAAATTGGTGTTATTTTTAGCTTTGTGCTTGCAATATATATTTTATTTTGTGGTTGCTATTATTTGAGAATTTCTCCTTTGTTTAACATGTTTAACATAGTAGGGGTCCAGTTTGAGCAGTTTCTATCCATCTGTTTTCCTAGACATTTTACTCCTCGAATGAAGTTTGATCCCATTAAATCTATGTCCTCAGCGAGCGCAACTAGGATTAGAAAACTCGATAGATACTTGCTTCATATATGCTCTATATGCATCTGACTCCGGATATTCTATCACTTTAATGAGGAAGTCTTGCCGACTTCCTGAATCCAGATTGACCAGTAGTCCACTTCATGCAGTACATCTTAAAAGTAGGTCTGGATAATATCATTTACCGAATGGTCAATGACTATTTGACATTAGTGATTTTCATTTTTTTTCACATACTATCACACTCATTAGTCATTACTCATATAATGAAGATCATAAATACTGAACCATCCTTGAGACTATTTGGAGAAAAAACTTTTTATCGAGTTAAGTTATATTCCTTCATAGGATTCTATTCTCCTGTGTTGTAACATATCAATAAGGATTGACCCAATTTAATGAGCAGTGCAAGGAAGGCGGAGAGTTTATAGATGGTAGACAGAGGCATCTGAGATGTTCTTGACCTTAAAAACTTGTAGTAGTATTTATATCAGTTTTTGTTTCTACTGTCATGTCGTAGTTTGTCCGTACATGTATTAGAACCAGTGTTGTGGACGGCGAGAGGCGACAAAAGGCGACAAGGGCCTGCCTCGCCACGCGGCGAGGCGAGCGGCGAGGCGCTTGCCTTTTTGAATAAAGGCGCCAATTAATACCAAAAATTAAAAATATTTAATTGCATATTTTATCCAAAGTCTTAATAGCAATAACACATATAAGCCCTTATTTCTTCTCTAATTTCCGACGGACAAGCGACACATTGTTTAACATTTTTGAAACCACCCACTAAATGTTGTTTGTGTCGAGTTATTCCACCATTGAAAGTACTCCCACAAAAGTTACAAGTGACCGAATCTTTCGTCGCTCCTTGAGTGCCATAATTCCATCCAATGTCCCTCTTTTTGCTAGCATCCGCCATTGATTATTAAATTCAATTAATTCGCTGTTTAGAAAAATTGGAATAAATAATTAGGAAAAGAATTTTTTTAAAAAAATTAACACTTTTGTTACACTTACACAAAGCAGTAAGCACTGCCTGACTGCTGCTTACCAAAAAAAAATAAAATGAAGAAGAAGAACAGAAAAAATAAGAACAGAAGAAGAAGTGAGAAAACATTACCTGAAAACCTGAAAACAGAGAGTGAGAGTCGCGAGGGTCGTCGGCGAGGGAGAAGAGACGCGACAGCGAGGGAGAGCGAGGGAGCAGAGACGCGACAGCGAGGAACAACGAGGGAGCAGCGACGCGATGGAGGAGAAGAGAAGAGTCAATCGATCGATCGAGAGAGTCGCGATGTGGAGGATTTCCGAAATTTTCANAAGTAAAAAAAAAAACCCTAATTTGGACTAATATTATTAAGTCAAAATTTTTTAATCAAAAAGGTGGCGCCTTTCGCTCGCCATTTCAGCGCCATAGATCGCCAAGAGCTCGCCTTTTTCTCCTCGCCTCGCCTCGCCAAAGAATGGCGAGCCACCCTCGCCTCGCCTTTCGCCTTTGGCGACGAGGCGAGCGCCATTCATAACACTGATTAGAACTTAGAAGTTAGTGGTTGGTTACAATCTATTTATGTATAGCCCATCCACCACAATACATCAACTGCCGGTCATCCCGATTTGCTCAATGTATAAGAAGCTCACACCTCTAACTTCCTCCCTTTATCCATGCTTGTCTAGCTCCAATGTCTTGAAGCAACCCACTAGCCGTCCATAATTGACTCAAACCAAACAATCCCCTTCATTTTAGTGTTACTCTTAGGGGCTGCAAATAAACTCTATGAGTTCTTGTAGAACCTTTTGTCAAATATATGAAATGTAAGTTAAATAAGGAGAGTGGCAAATAAAGCTCCTTCTTTCTGGGTTGCAGGCATGTTTACGCTTGAAAATCATGGTCTTCTTTATTATTCCCGTTCCTCCGATAACTTCCATCTCCCATCTTACAATTCCTCACTTTGTTTTTGCTAATGTTGGATGCTTGATATTGCAGAAAGACGAAGGGAGTACAAATGAAAAGGACGAAGAATGTTAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACTAGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGAATGGCTGAATGATATATTTTTTCCCTTTTCTGATTACTTATGAATGAAATGATTTTGATTT</genome_strand>
        <mrna_strand>TAGCTATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCAAG.......................................................................................................CGATGGATACTTCAGAATCAGCTGCTCCAAAACCACATATAGGTGGATCACTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACGAAGGGAGTACAAATGAAAAGGACGAAGAATGTTAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACTAGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGAATGGCTGAATGATATATTTTTTCCCTTTTCTGATTACTTATGAATGAAATGATTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706278" ref_strand="+" ref_description="SGN-E706278 [FA29CA12]">
      <seq>cgatataatatccacgttcaatcggcaaaccaagctcactgtttcttcttcttctctctttcatggcgctccagcactcgcctattggcacaattacttcttcagctcaaatgaagctggctgttagcagtttgaggtgctacgagcaccttcgtcctatcactatctcaagcttcaagcgttttccacgaagaattcagggtgcgcattgtagtgtggagcaaaggaagttgcttagcagaagtatttcgtccagcaaagaaaaatcgaaggatctccatgaagatgttttttctttgtcaatggcttgcactagtgccccaattagattcacaatgctctcaactgctgtcatagccacaaatttggttgcaacacataccgcaaatgctttgactatggataacatgatggatttctctagcgctgtctatacattagctgatggaagcattggagatctttttggtggccttctgtattctgctggtcaacaagctaatgaagctgttcagggccagttgactgctcttagttttactagtttggccactatttttggtgccgggcttgtaactagtctgtcgccttgtacactcagcgtactgcctctgaccccttggttatattggggcttttggttctgggaaaagccgagtagcggttgttggagattccattgcatttgcactgggattggcaaccacactagcattattgggtattgcggctgcatttgcctggaaggcatatgggcaaatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="89245" stop="93830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89543" g_stop="89743" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89744" i_stop="90160" i_length="417">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90161" g_stop="90316" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="357" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90317" i_stop="91409" i_length="1093">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91410" g_stop="91465" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="413" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91466" i_stop="92316" i_length="851">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92317" g_stop="92447" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="544" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92448" i_stop="92540" i_length="93">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92541" g_stop="92626" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="631" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92627" i_stop="92718" i_length="92">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.628" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92719" g_stop="92750" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="663" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93429" g_stop="93530" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="765" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E706278" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89543" e_stop="89743"/>
          <exon e_start="90161" e_stop="90316"/>
          <exon e_start="91410" e_stop="91465"/>
          <exon e_start="92317" e_stop="92447"/>
          <exon e_start="92541" e_stop="92626"/>
          <exon e_start="92719" e_stop="92750"/>
          <exon e_start="93429" e_stop="93530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAATATCAACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGGGCAAGTAAATCCTCTTTTCGAGCCTCTCGAGCAATTTGTCTTTCTTAGTTTTTCTTCTTCATTTTCTTAGAAACTTAGTTAATCTGATTACTGTTGAGGTCAATAGCTCAGAAAATTTCAGTTATTTGGATACAAATTCTGGTGAATGAAGTTCTTCATCATTTTTTGGAAATTTATTTAATTTGATTACTGTAGAGATCAATAGCTCGGAGATTTCAGTTAATTGTATACAAATTCAGGTGAATTCAAGTACTTCAACAGAATTTTTGACTTCTGATACATGTAGTTTGCTCCAATTCGATGCAATAATGTCTGCCTTTTCTACTTTGATCCATAATAAACCAAGCGATTTACTCATTTAATCATATGTCTAATACTGTGTATTATCTACGTACTTTATGCTATTCGTTCTTCTAGGTGCGCATAGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAGGTATTTCGACAAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGCCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAGGTATTCTCCTTAGATCTTGCTAATCATGAAAAAATTTGGAGAGCTATATTGTGAGCATTGTAGTTAAATTTCCAGGGATTAACATATGCATGTTGTTTATAGCCTATTTTTTGCTTTGCCTTAGCAGTGGTAACTTGTCCATACCTTGAAACGTGACTACTACAAAGAGCAACAAATATTGAAGTTATATACCCAAATAGGAAATCCTACACTAAATTATGGCTTACTAGAAAGAGCAACCAATCATTTTTGCGAGAGGACTGCTATATATGCTCCTGAAATATAGAAAGCAGAGCTAAGATAATGTCTTGACTTTAGGGGCGGAGAAAATATTAGCTATGAGTCTGGATGGATCCTTAAAATATGTATAAATATTTAATTGCAAACCCCTTAAATAAAATGAGTTATGAGTTTGGTGGCACGTTTAGGATTCATAAACTTCAAATTCTAGCTTTATGCTGCTCTTGAAGCCTTGCAGTTCCTTCCCTCGAGACTATCAATCGAGTGCTAACGGAGCAAATCTTCCATATTGCTCAATGCCCTCGCAGCACATCTCCTCTCACTAAGGGTAAATCCTTTGCAGTGGAATCAGAGTCCTTCAATCCCAAAAATGTCCGAATGGCAATGGAGAAATAACTGATTGACCAAGTCTATAATCGAGGCATAAAATTACTCATGTAATGTAGTTTGGTTTGTATGATTGCCTTCATCCAAATCAAATCCCCTCACTTTCATTGGCCATCTTGAATTACCATTAAAGAAGACTAGACTCACTTGAGTGCCCCGATCACACTCATCACTACTGATGCTTTTTTATTGTAACTTGCTGAGGCGACCTAGCAGCAGGAGTCACTGTTTCTGTTCTTAAATTGATTATGTATTATATGAGCTGTTTCATGAATTTTCTTTTCAGAAAATGTTTGTAGACTTGAGTTGTGACATCTGTCAAAATCATTCAGTAACTGGGGCTTGCATTTTGTTTTGGCTTTGATTAAAATGTTTTGTTTTCTGCTTAGTAAATGCTTTTGCCTGATTTCATAATTAATTCACGCTTAACAATAAAATAACACTAATTATCTGTCTTCACATTTAGCCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATGGTGAGAATTCCTTCGTCAACCTTAAGTTTCTTACTATGTTGTTTGGTGTTTTTTTTTAAATGTTTTGCATATGCTTTTGTAAAACCATCATGACACGCGATAACATAAGATGACATATGTAGCATCTGTTTGATCTATGCTTCTTTTTCTTTCTTCTGCTCTTACGGATCTCAAATTTATGTTTCATTGACTAATCATGTGCATGTATATTTTTGTATGGCCTGTTTCCCATGAATTAAAGAAATGGTTCCTTTCTTACTACTCTGTTCTGTTTTTTTTCTTTATGAGATAACATATACTGAAATAACAACAGCAGATTAAAGTAAAAGAGTTCATAGCGAACTTGCTCCTAGATGTTCTCTTGCTAAGCTGAATTTCTTGTAATACTTTCTGCATCAGTTTGTATGTCTATTACTGGCTTAGTGGGGGAGATATGTGCTTAACATCTTTGTGGGGATGATATGCGGAAATTTTAGTCTTCTATTTACCAGTGTTATAGACGACACATTAGTTTGAATCTTGGTTAGATAAGATGTGAGACCCTTGTTCAAATCTCGAAAATTTGAGGGGAGCTATTGAAATTATGTACACTTGGATGGAAGCTTGACCTGTTATCGAAATGTCTTATTCCGGCTAGCAACATGTTGATGAAGCCACTTATAACCTGCAGTGTCGGCCCAATTGATTTGTATTTTCAGTGTTTAATTGCATTTTGTTGAGACCTTTTTTGTGATTCTTTGCAGTTTGAACTAAGTATTCATTTCCTAGTGGAATGTATTTCACATAAAACAGTGGTAAATCTTCAACTGATTATATGTTAAGGGGACTATACTTGTCTTCATTGACTTCAGGATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAGGTCTAAATCTTAATCATGAAAATTTCATCTGGTACTCATATAATGTATTCATAAAATTTGGTGCTTCTGATTCTTAGACTTTCCTCCTTGCAGTTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGA-CCCTTGGTTATATTGGTAGGAACTTTGAAGTTGAATCTTTTCTCTCTAAATATGCAGCATATATTCTCTCTCTCTGACGATTTTACGATCTTTTGAAATGACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCGGTAAAAACCTTTCTCTTAAATTTAATTTTGTATTGTTTCTTCTTTATCCTTGCACTTTTGATGTGCATTGTTCTCAATGAAGGAACTTAGGTTATAGATCATACAGAAAATTTTGACAGGTTTATATGTGAATCCTTTTACCTCAAATTTTTTGAATCTCATGTAAAGGTTTACTTGCGAATCCTGTAAGTGGTGAATGATGGTTGTTTATTTCTTGATGATGAGTCCATTTATGATTTTCGTTATGATAAAATTCTATCACAACAAATGTTTATTTAACGGATGCCATGATCGACTTCCTCAGTTCATTACACAACTTGTAATGTTGCTTGTAGCTCTCTCCCAACATCTGCTTTTTACTGTCGTGCATCAATATAGACAATTTACTGATAAAAACTAATAATAATCAAAGTTAATGTTTTCTCCATCAAACTAGTTTTTCAATTGGTACTTCAATATTTCTACTAATGTTTATATTGAAGTCATACTGATATCTTCTACTCCGTGTCAACCAAAAGGTGTCGTATAGAATATGAAAGGAGTACTAGAAAGTAGAAAATTATTTTATGCACAAAGCTTTGCAGAATTCTGCATTTTCCAATTGGAAATTTACCAGAGGCCAGAGCGTAGTACTAGTTCAATTTTCTCTCTTAACACTTAAGCAATCCTTGTGTACAGGTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGA</genome_strand>
        <mrna_strand>CGATATAATATCCACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCATTGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAAGTATTTCGTCCAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGTCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAG.............................................................................................TTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGACCCCTTGGTTATATTG............................................................................................GGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGAGATTCCATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCCTGGAAGGCATATGGGCAAATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366449" ref_strand="+" ref_description="SGN-E366449 [cLPT-1-N22]">
      <seq>gatcttaggggcttttggttctgggaaaagccgagtagcggttgttggagattcaattgcatttgcactgggattggcaaccacactagcattattgggtattgcggctgcatttgctggaaaggcttatgggcaaataggacaaggattgcccgtggctgcttcctttttagctattgttatggggctaaacctgttagaggtaactacatatgttgaatgcttcgatagtttagtaatacccttttacttctaagtttttgttttgagactttgttgagtactattgtctttattctttattgagcccatgctaacatttgctttttgtctgatattcagatattttgttctaaaggaattacagcgcttgttgttttgatatgttaatcactcttgcttgcataaatacctatcagttaaaaaagtgatgttctatgcagtaccaggtgccccacatcatctttaccataatgagaacctgtgaaacaaaagaagagagatccgtctaggcatttcgatagaatgatgactgctacttttggtacctggatagtgaaaattgtggataaaaccatcggatctaagtacaaattgtatgtctggatttagcaaaagctatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="92411" stop="94307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="92750" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93429" g_stop="94007" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="627" r_length="587" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E366449" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="92750"/>
          <exon e_start="93429" e_stop="94007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCGGTAAAAACCTTTCTCTTAAATTTAATTTTGTATTGTTTCTTCTTTATCCTTGCACTTTTGATGTGCATTGTTCTCAATGAAGGAACTTAGGTTATAGATCATACAGAAAATTTTGACAGGTTTATATGTGAATCCTTTTACCTCAAATTTTTTGAATCTCATGTAAAGGTTTACTTGCGAATCCTGTAAGTGGTGAATGATGGTTGTTTATTTCTTGATGATGAGTCCATTTATGATTTTCGTTATGATAAAATTCTATCACAACAAATGTTTATTTAACGGATGCCATGATCGACTTCCTCAGTTCATTACACAACTTGTAATGTTGCTTGTAGCTCTCTCCCAACATCTGCTTTTTACTGTCGTGCATCAATATAGACAATTTACTGATAAAAACTAATAATAATCAAAGTTAATGTTTTCTCCATCAAACTAGTTTTTCAATTGGTACTTCAATATTTCTACTAATGTTTATATTGAAGTCATACTGATATCTTCTACTCCGTGTCAACCAAAAGGTGTCGTATAGAATATGAAAGGAGTACTAGAAAGTAGAAAATTATTTTATGCACAAAGCTTTGCAGAATTCTGCATTTTCCAATTGGAAATTTACCAGAGGCCAGAGCGTAGTACTAGTTCAATTTTCTCTCTTAACACTTAAGCAATCCTTGTGTACAGGTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTGTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTATTTGTTCTTTATTGAGCCCATGCTAACATTTGTTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACATCGCTTGTCGTTTTGATATGTTAATCACTCTTGCTTGCATAAATA-C---C----AAAAGAGTGATGTTCTATGCAGTACCGGATGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTAAAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</genome_strand>
        <mrna_strand>GATCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCTTATGGGCAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTTTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTCTTTATTCTTTATTGAGCCCATGCTAACATTTGCTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACAGCGCTTGTTGTTTTGATATGTTAATCACTCTTGCTTGCATAAATACCTATCAGTTAAAAAAGTGATGTTCTATGCAGTACCAGGTGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTACAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541587" ref_strand="+" ref_description="SGN-E541587 [TUS-62-H7]">
      <seq>ggagcattgagagtatcaaaacctaaacggcaagacacgctggagagtacatggaagacgataacggagggccgtgcaatgccactaacgaggcacctgaggaaatcagacacgtgggagacatacggtggtcggaacccggttacaccaccaccgcagaagatgaagaaatctgagacgttcaatgacagaactacccctgactcctcgccattgctgactccgtccccgggtggttcagggaaacttaagaaagagccatcgctaagtcaagacgagctgaacaggcgagttgaagcgtttattaagaagtttaatgaagatatgaggttgcagaggcagcagtcgatgcaacagtacactcagatgatcaatcgaggctcacattaggagtttttttcatataaacagagaagctctctcttttttcatgttttatggcttatagtgaatgcatattgttatttattcatatttcttttatcgagaaattctcccaaaaaaaaactaaaaaactacaggaagctgtaatccagttagaacatagactatattatcggaaagtttgagttgtaatgttttatttttctttcatgtggatattatatggccttaacatgtgatcgaacagtgttgtgttctccatacagaaattgaaatatttttattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="97903" stop="96634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97603" g_stop="96922" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E541587" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97603" e_stop="96922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCC-AAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGATTTTTGAACAAT</genome_strand>
        <mrna_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCAGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541584" ref_strand="+" ref_description="SGN-E541584 [TUS-62-H7](-)">
      <seq>ggagcattgagagtatcaaaacctaaacggcaagacacgctggagagtacatggaagacgataacggagggccgtgcaatgccactaacgaggcacctgaggaaatcagacacgtgggagacatacggtggtcggaacccggttacaccaccaccgcagaagatgaagaaatctgagacgttcaatgacagaactacccctgactcctcgccattgctgactccgtccccgggtggttcagggaaacttaagaaagagccatcgctaagtcaagacgagctgaacaggcgagttgaagcgtttattaagaagtttaatgaagatatgaggttgcagaggcagcagtcgatgcaacagtacactcagatgatcaatcgaggctcacattaggagtttttttcatataaacagagaagctctctcttttttcatgttttatggcttatagtgaatgcatattgttatttattcatatttcttttatcgagaaattctcccaaaaaaaaactaaaaaactacaggaagctgtaatccagttagaacatagactatattatcggaaagtttgagttgtaatgttttatttttctttcatgtggatattatatggccttaacatgtgatcgaaccagtgttgtgttctccatacagaaattgaaatatttttatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="97903" stop="96634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97603" g_stop="96923" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E541584" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97603" e_stop="96923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCC-AAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAA-CAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGATTTTTGAACAA</genome_strand>
        <mrna_strand>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCAGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACCAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298554" ref_strand="+" ref_description="SGN-E298554 [cLET-41-L7]">
      <seq>gagcattgagagtatcaaaacctaaacggcaagacacgctggagagtacatggaagacgataacggagggccgtgcaatgccactaacgaggcacctgaggaaatcagacacgtgggagacatacggtggtcggaacccggttacaccaccaccgcagaagatgaagaaatctgagacgttcaatgacagaactacccctgactcctcgccattgctgactccgtccccgggtggttcagggaaacttaagaaagagccatcgctaagtcaagacgagctgaacaggcgagttgaagcgtttattaagaagtttaatgaagatatgaggttgcagaggcagcagtcgatgcaacagtacactcagatgatcaatcgaggctcacattaggagtttttttcatataaacagagaagctctctcttttttcatgttttatggcttatagtgaatgcatattgttatttattcatatttcttttatcgagaaattctcccaaaaaaaaactaaaaaactacaggaagctgtaatccagttagaacatagactatattatcggaaagtttgagttgtaatgttttatttttctttcatgtggatattatatggccttaacatgtgatcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="97902" stop="96676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97602" g_stop="96976" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E298554" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97602" e_stop="96976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCC-AAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAAC</genome_strand>
        <mrna_strand>GAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCAGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353533" ref_strand="+" ref_description="SGN-E353533 [cTOS-15-B1]">
      <seq>tgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatccttgacacagggtatgttcacaaaacgctgaaaaaccaacaaggaagcatactagctattagtatacaaattgtttttttttcccacaggaaattagcttttgttgttctactcctgttttggagattgtaaactaaatgtagaggaccaaatattgagttttctttaaggtgatggcttgatttgtatttttgtatctggaaaaataagctctcaaagattggatggtattcgattcttttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103773" stop="102025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103473" g_stop="103353" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="180" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102693" g_stop="102325" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="549" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E353533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103473" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</genome_strand>
        <mrna_strand>TGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281069" ref_strand="-" ref_description="SGN-E281069 [cLER-7-E13]">
      <seq>aggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggcccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatccttgacacagggtatgttcacaaaacgctgaaaaaccaacaaggaagcatactagctattagtatacaaattgtttttttttcccacaggaaattagcttttgttgttctactcctgttttggagattgtaaactaaatgtagaggaccaaatattgagttttctttaaggtgatggcttgatttgtatttttgtatctggaaaaataagctctcaaagattggatggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103719" stop="102041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103419" g_stop="103353" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="126" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102693" g_stop="102344" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="476" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E281069" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103419" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATG</genome_strand>
        <mrna_strand>AGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGCCCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299243" ref_strand="-" ref_description="SGN-E299243 [cLET-43-C14]">
      <seq>aggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatccttgacacagggtatgttcacaaaacgctgaaaaaccaacaaggaagcatactagctattagtatacaaattgtttttttttcccacaggaaattagcttttgttgttctactcctgttttggagattgtaaactaaatgtagaggaccaaatattgagttttctttaaggtgatagcttgatttgtatttttgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103800" stop="102072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103500" g_stop="103353" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="207" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102693" g_stop="102372" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="529" r_length="322" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E299243" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299243" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103500" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCT</genome_strand>
        <mrna_strand>AGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATAGCTTGATTTGTATTTTTGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705667" ref_strand="+" ref_description="SGN-E705667 [FA27DC01]">
      <seq>gtaacttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagttacaaactccattgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatacatcaacaacaacttgttatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataaagccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaacggtattgtgccgccaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatctttgacacagggtatgttcacaaaacgctgaaaaaacaaccaaggaagcatactagctattagtataccaattgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104801" stop="102191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104501" g_stop="104294" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103830" i_length="464">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103829" g_stop="103669" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="369" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="606" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="665" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102693" g_stop="102491" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="869" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E705667" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104501" e_stop="104294"/>
          <exon e_start="103829" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAA-CAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTT</genome_strand>
        <mrna_strand>GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGTTACAAACTCCATTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATACATCAACAACAACTTGTTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAAAGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCTTTGACACAGGGTATGTTCACAAAACGCTGAAAAAACAACCAAGGAAGCATACTAGCTATTAGTATACCAATTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262410" ref_strand="+" ref_description="SGN-E262410 [cLEG-56-G10]">
      <seq>tcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacacttccagcaaacggtattgtgcccgcaggaccaagcaagcaagcagctaccccgatatcatcaagctccacacagtcaacaaaagaattcgacttttcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104795" stop="102269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104495" g_stop="104294" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="390" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="627" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="686" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102693" g_stop="102569" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="812" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E262410" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104495" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACACTTCCAGC-AACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCT</genome_strand>
        <mrna_strand>TCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACACTTCCAGCAAACGGTATTGTGCCCGCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295458" ref_strand="+" ref_description="SGN-E295458 [cLET-23-N24]">
      <seq>agcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttctactcaatgggacagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104137" stop="102370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103837" g_stop="103669" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="406" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="465" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102693" g_stop="102670" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="489" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E295458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103837" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
          <exon e_start="102693" e_stop="102670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGCAGCTTCTACTCAATGGGACAGAACAC</genome_strand>
        <mrna_strand>AGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTACTCAATGGGACAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688405" ref_strand="+" ref_description="SGN-E688405 [t3_tus_50_f15]">
      <seq>atggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccaggtattaacctctgatcgttgttagttaatgtagaacttcaactgttctttgagggcctaatgtttggtctataaattcaacaacttaatccaatgcatctatcctgccaattatttgtcattaagatctcttaaattatgaccccttaatgctcaatgtagtgtatccattaactgtttcttccatttgatttaaagtatccctcctcttactcctcttgttaataatgggttgcggacagaccccattgaacagtatttttttaatccatagctacatctccggaggtatatgatcaatttgcattgacaagctcagttgccagtcatctttgacttagtttaatactgatgtaggttattgaatcagttgaacaaattttgatagttgtgctatctatcgtatccaggaggaaacaatttttgggtgctagttaatttttcatcttttgatgctcatagttgatcttttgttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103756" stop="102396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103456" g_stop="103353" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="102696" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="641" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E688405" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103456" e_stop="103353"/>
          <exon e_start="103232" e_stop="102696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</genome_strand>
        <mrna_strand>ATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAAACAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550725" ref_strand="+" ref_description="SGN-E550725 [TUS-50-F15]">
      <seq>atggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccaggtattaacctctgatcgttgttagttaatgtagaacttcaactgttctttgagggcctaatgtttggtctataaattcaacaacttaatccaatgcatctatcctgccaattatttgtcattaagatctcttaaattatgaccccttaatgctcaatgtagtgtatccattaactgtttcttccatttgatttaaagtatccctcctcttactcctcttgttaataatgggttgcggacagaccccattgaacagtatttttttaatccatagctacatctccggaggtatatgatcaatttgcattgacaagctcagttgccagtcatctttgacttagtttaatactgatgtaggttattgaatcagttgaacaaattttgatagttgtgctatctatcgtatccaggaggaacaaatttttgggtgctagttaatttttcatcttttgatgctcatagttgatcttttgttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103756" stop="102396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103456" g_stop="103353" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="102696" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="641" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E550725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103456" e_stop="103353"/>
          <exon e_start="103232" e_stop="102696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</genome_strand>
        <mrna_strand>ATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205358" ref_strand="+" ref_description="SGN-E205358 [cLEC-25-F6]">
      <seq>tggcaccaatatggtaaatcagaactggccaaatttaggctatcagttgcctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccaggtattaacctctgatcgttgttagttaatgtagaacttcaactgttctttgagggcctaatgtttggtctataaattcaacaacttaatccaatgcatctatcctgccaattatttgtcattaagatctcttaaattatgaccccttaatgctcaatgtagtgtatccattaactgtttcttccatttgatttaaagtatccctcctcttactcctcttgttaataatgggttgcggacagaccccattgaacagtattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="103755" stop="102610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103455" g_stop="103353" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103232" g_stop="102910" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="426" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E205358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103455" e_stop="103353"/>
          <exon e_start="103232" e_stop="102910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTT</genome_strand>
        <mrna_strand>TGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTGCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551124" ref_strand="+" ref_description="SGN-E551124 [TUS-55-F9]">
      <seq>ttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcaaaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104796" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104496" g_stop="104294" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="391" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="628" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="687" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E551124" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104496" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG</genome_strand>
        <mrna_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAAAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688912" ref_strand="+" ref_description="SGN-E688912 [t3_tus_55_F09]">
      <seq>ttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcaaaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaaactctgtgccaattccagcatccagcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104796" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104496" g_stop="104294" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="391" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="628" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103174" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="687" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E688912" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104496" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG</genome_strand>
        <mrna_strand>TTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAAAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728337" ref_strand="+" ref_description="SGN-E728337 [LA17CA02]">
      <seq>ccagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacgaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgctgctagagtcagtataccagtgcctcctagaggaccagagcatgtaacttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcataagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagttacaaactccattgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatacatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcggctgctgcaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttangctatcagttccctggagtgataaagccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaacagcacatgtaagtgggaactctgtgccaattcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="105888" stop="102877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105590" g_stop="105360" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104501" g_stop="104294" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="439" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104293" i_stop="103830" i_length="464">
            <donor d_prob="0.663" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103829" g_stop="103669" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="600" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103589" g_stop="103353" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="837" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103232" g_stop="103177" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="892" r_length="55" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E728337" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105590" e_stop="105360"/>
          <exon e_start="104501" e_stop="104294"/>
          <exon e_start="103829" e_stop="103669"/>
          <exon e_start="103589" e_stop="103353"/>
          <exon e_start="103232" e_stop="103177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATC</genome_strand>
        <mrna_strand>CCAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACGAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCATAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGTTACAAACTCCATTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATACATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTANGCTATCAGTTCCCTGGAGTGATAAAGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGAACAGCACATGTAAGTGGGAACTCTGTGCCAATT-CAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208413" ref_strand="+" ref_description="SGN-E208413 [cLEC-37-J9]">
      <seq>aagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttccagtctgctcaagaagcaacaaaagcagaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaaggtggtgctgtaagacttcctgtaaatgcacaacaaagcactaatggcaccaatatggtaaatcagaactggccaaatttaggctatcagttccctggagtgataatgccagcagctggtaagactgagctggagaaatatatgcaggtaggcaatatgggaccagcacatgtagttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104764" stop="102899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104464" g_stop="104294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="359" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103499" i_length="170">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103498" g_stop="103353" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="505" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103232" g_stop="103199" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="539" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E208413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104464" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103498" e_stop="103353"/>
          <exon e_start="103232" e_stop="103199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAGGTATAACACGAGTACTATTTATCAAAGATAAAGAGAAAAAAACACACGGATATCTGATTAAATATTGAAATTTTCTTTAAGTTTCTTTACTCAAAGCTGTTTATTTTTCTTCTAAACTAGGTAGGCAATATGGGACCAGCACATGTAGTTGGAA</genome_strand>
        <mrna_strand>AAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG..........................................................................................................................................................................GTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG........................................................................................................................GTAGGCAATATGGGACCAGCACATGTAGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337198" ref_strand="+" ref_description="SGN-E337198 [cTOE-7-E21]">
      <seq>tcacaaagcagagccagttgcagtcactgaaccagctaagcatgttccggaagctgccagtcctcctaaagtcgattatgctactgatctatttgacatgctttctatggattgtccaactgacaatggctcagaagcagcttctaccgatgataactcctgggcaggcttgcagtctgctcaagaagcaacaaaagccgaaaatactggggttacaaactccgttgatcagaagaagtctcaatctgctgctgcttctggaattgaagatttattcaaggatttaccatcaattgtgccttctgcctcatcgcagaagccacagaaagatgctaaaaacgatataatgagccttttcgacaagtccaatattgtgtcaccttttgctatgcatcaacaacaacttgctatgctggcgcaacaacagtctttactgatggctgcagctgctgcaagtggtgctgtaagacttcctgtgaatgcacaacaaagcactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="104769" stop="103156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104469" g_stop="104294" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437">
            <donor d_prob="0.663" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103856" g_stop="103669" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="364" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103589" g_stop="103456" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="498" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E337198" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104469" e_stop="104294"/>
          <exon e_start="103856" e_stop="103669"/>
          <exon e_start="103589" e_stop="103456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGTGTATGTCAAGTCACCGTTTTGTTTGAAACGTGATTCTTTCTCTTCCAGTTTGTAACATTTAGAGGGTGTACTTGTCTTTTTCACTAGCATGGTCCATATTTTTCCAAGTGTTTTACTTCTTTTTCTGAGAGAAGACAAGTAGTTTGAGAATCAACAATAACTACACCACAGTTTCAAAAAAAGTTGGGAATGTAAATGAATACTCAGCTGAACTTTTGTCATCATCATACAAAATATATGTAACTGTGAAAAAAGTTAAATATATGAAATAATAATTATATTAGAAGTTCATATATTATGGCATATAAAGCTATGTTAAGGTCAAATACTCCAGTTAAGAATCAACAACTAGTAATTTTTCTTGGCATTTAAATTCAAGTTATCATAGTACCTATTGTTGCTCATTATCTCTTATTAAGTAAGTTGTGCCTTTGCAGCTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAGGTACAACACAACAAGAATTTGGATTTTTGGTCATGTCTATCTTTCCTCCTTTATCTAATAACGTTGTTGTCATTTACAGTCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAA</genome_strand>
        <mrna_strand>TCACAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCATGTTCCGGAAGCTGCCAGTCCTCCTAAAGTCGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTGCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCAAGAAGCAACAAAAGCCGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG...............................................................................TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCAGCTGCTGCAAGTGGTGCTGTAAGACTTCCTGTGAATGCACAACAAAGCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707253" ref_strand="+" ref_description="SGN-E707253 [FA32BH11]">
      <seq>ctctgttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctaggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgctgctagagtcagtataccagtgcctcctagaggaccagagcatgtaacttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctaaagttgattatgctactgatctatttgacatgctttctatggatttgtccactgacaatggctcagaagcagcttctaccgatgataactcctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109485" stop="104006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109187" g_stop="109009" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="238" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="329" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="384" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="475" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="710" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104501" g_stop="104306" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="906" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E707253" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109187" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105360"/>
          <exon e_start="104501" e_stop="104306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGG</genome_strand>
        <mrna_strand>CTCTGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTAGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTTGTCCACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703060" ref_strand="+" ref_description="SGN-E703060 [FA20BG09]">
      <seq>cttcctcatccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctaggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgctgctagagtcagtataccagtgcctcctagaggaccagagcatgtaacttcaggtcaggttgctaaccagacaagtcagaaagcagagccagttgcagtcactgaaccagctaagcaggttccggaagctgccagtcctcctnaagttgattatgctactgatctatttgacatgctttctatggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109495" stop="104055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109195" g_stop="109009" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="246" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="337" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="392" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="483" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="718" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104501" g_stop="104355" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="865" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E703060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109195" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105360"/>
          <exon e_start="104501" e_stop="104355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCATGTATGTTAAACTTATTCGTCAAACTGTTTTTGTCCATGCTACTTTCCCTTCCAGGTGTAGTATTATTGTTTCAATGTTCTATTTTGAATGAAATCTTATTCTTTTGCTGGTTATCTACCCGACTTGCCTATGTATGTGAGCTGATTGGGCCGTTAGCTCTTGAGTTATTGGTTCACTGTAAGGGTCGTTTGGTAGAGTGTATTAATATAATGCAAAATAGAGTATACTAGTAATGCTTGCATTAGCAATTCAGTATTAGTTATGCTTGCATTAATTATACATAGATTATTTTTATGCATTGTTTGGTTTGATGCATTAAAATAGAATGCATTACATTAAAAGAAATATTTACAAAGATACCCTTCACTATTATGGTAGAAAAGATATAACAAAGGTATTGAGGGGCAATTGGGTGTTTAATTGAGTTAATGCATGCATTAAAAGCATTGCATTGTTAGAAATATATGCTATTAGCAATACACATCTTAATGCACAATAGAGTGTGTAACTAATGCAAGCATTAGTTATACATAGGTTGGAAAAGAGTACCAAACAAGTTACTAGCAACACACAAGGCTAATGCATGTATTATTTTTTTAATACACTCTACCAAGTGTTCCCTAAGTGTATTTGTGTTGAATATTGATTCTTTACTCAGATTAATGAATTAAGCAGCTCTTGTTCATACTGTTTAGCTATTACATACTTGGAATCTTAGTTTTTATGTACGTGGTGTATTCATGGCCCCTGTTGGTCCTTCTGTAGTTCTGTATAACTGCTGCTAGCTGCTGTTTCTTCTGAGTTAGTTTGGATACTTTCTGGATTAGAATAGACTCTTATAGGTTTGACACCTTGCAGGTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGT</genome_strand>
        <mrna_strand>CTTCCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTAGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTNAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728900" ref_strand="+" ref_description="SGN-E728900 [LA19BC09]">
      <seq>ttttgtatagaatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctaggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109471" stop="105099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109171" g_stop="109009" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="222" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="313" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="368" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="459" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105399" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="655" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E728900" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109171" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTG-ATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCT</genome_strand>
        <mrna_strand>TTTTGTATAGA-ATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTAGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345953" ref_strand="+" ref_description="SGN-E345953 [cTOF-24-J12]">
      <seq>tttctcatccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagagggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggctttcggtgcaatggcaacaaaacaatgaatagaatggggcgtatacatgcagctagctcaaggatgtgcatctgacgagaggaaaaatattcaagcctcgaaagtgaagcaagatgtacctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109494" stop="105102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109009" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="482" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105402" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="679" r_length="197" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E345953" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGA-GGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGC-TTCGGTGCAATGGCAACAAAACAATG-ATAGAAGTGGGCGTATACATGCAGCTAGCTC-AGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCT</genome_strand>
        <mrna_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTTCGGTGCAATGGCAACAAAACAATGAATAGAATGGGGCGTATACATGCAGCTAGCTCAAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297901" ref_strand="+" ref_description="SGN-E297901 [cLET-38-I6]">
      <seq>ccagttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109486" stop="105129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109186" g_stop="109009" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="237" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="328" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="383" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="474" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105429" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="640" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E297901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109186" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCC</genome_strand>
        <mrna_strand>CCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360260" ref_strand="+" ref_description="SGN-E360260 [cLPP-14-J2]">
      <seq>tattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagttattgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcaccttccagggttcaagaagagagggcttcggtgcaatggcaacaaaacaatgatagaagtgggcgtatacatgcagctagctcaggatgtgcatctgacgagaggaaaaatattcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109419" stop="105129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109119" g_stop="109009" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="170" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="261" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="316" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="407" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105429" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="573" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E360260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109119" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCC</genome_strand>
        <mrna_strand>TATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTATTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249447" ref_strand="+" ref_description="SGN-E249447 [cLEF-50-J16]">
      <seq>tcagatcggcgatttttattttccgatagctactctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatataaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacgctagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtatggagaatttcatccgagccaaatgtgaacagaagaagtgggtccctaaggatgggattcaaaaatcacctctgcaggttcaagaagagagggcttcggtgcactggccacaaaacaatgatagaagtgggcgtatacatgcagctagctcaagatgtgcatctgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109435" stop="105149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109135" g_stop="109009" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="186" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="277" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="332" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="423" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105449" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="569" r_length="146" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E249447" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109135" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCT-TCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACG</genome_strand>
        <mrna_strand>TCAGATCGGCGATTTTTATTTTCCGATAGCTACTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATATAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACGCTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATGGAGAATTTCATCCGAGCCAA........................................................................................................ATGTGAACAGAAGAAGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTCTGCA-GGTTCAAGAAGAGAGGGCTTCGGTGCACTGGCCACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAAGATGTGCATCTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307052" ref_strand="+" ref_description="SGN-E307052 [cLEY-15-O3]">
      <seq>atagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109466" stop="105245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109166" g_stop="109009" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="217" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="308" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="363" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="454" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105545" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="504" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E307052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109166" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTT</genome_strand>
        <mrna_strand>ATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311456" ref_strand="+" ref_description="SGN-E311456 [cLEZ-18-K4]">
      <seq>ttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccgagcaaaatatgaagagaagaggtgggtccctaaggatgggattcaaaaatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109482" stop="105246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109182" g_stop="109009" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="233" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="324" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="379" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105699" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="470" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105594" g_stop="105546" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="519" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E311456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109182" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105699"/>
          <exon e_start="105594" e_stop="105546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAAGTACGTGCTTACTAATTCTCTAACAATTAGTACCTTTATGCAGTCTTCTTTCACTCAATCTAGTATTTGATGCTTATTCAAGACATTTCCTGTGTTTTGATAAGATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCT</genome_strand>
        <mrna_strand>TTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA........................................................................................................ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373293" ref_strand="-" ref_description="SGN-E373293 [TUS-31-P7](-)">
      <seq>ttttttttttttttttttttttttgatagatatttacccgtcggagaggggaggaatcaaatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgaaaaggctaatgttactaaagagcttaatgcgaagcataaaaagatactaaaaggacttcttaagttgcccgaaaacagggaatgtgcaaattgcaaagccaagggtcctaaatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacaaaagcctgggggtgcacatatcaaaggtcaaatcagctacactaaacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcaaagctgcctccaaattatgatagagttggtattgaaaatttcatccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109477" stop="105404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109162" g_stop="109009" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="183" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="242" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="333" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="388" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105704" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="474" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="24" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E373293" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109162" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGA</genome_strand>
        <mrna_strand>ATATTTACCCGTCGGAGAGGGGAGGAATCAAATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAAAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAAAAGGACTTCTTAAGTTGCCCGAAAACAGGGAATGTGCAAATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAAATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAAAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGCTACACTAAACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAAAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAAAATTTCATCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373294" ref_strand="-" ref_description="SGN-E373294 [TUS-31-P7]">
      <seq>ttttttttttttttttttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109477" stop="105405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109177" g_stop="109009" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="184" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="243" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="334" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="389" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105705" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="474" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="15" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E373294" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109177" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCG</genome_strand>
        <mrna_strand>TTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292171" ref_strand="-" ref_description="SGN-E292171 [cLET-1-K16]">
      <seq>ttttttttttttttttttttccnnngatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109467" stop="105405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109162" g_stop="109009" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="184" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="243" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="334" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="389" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105705" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="474" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="20" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E292171" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292171" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109162" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCG</genome_strand>
        <mrna_strand>ATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358077" ref_strand="+" ref_description="SGN-E358077 [cLHT-23-M15]">
      <seq>tttctcatccagttgcatttttcttgtgatagatatggacgcgtcggagaggggaggaatcanatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctaggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagtttttgggaagcagagctgcctccaaattatgatagagttggtattgagaatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109494" stop="105408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109009" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105708" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="473" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E358077" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCAT</genome_strand>
        <mrna_strand>TTTCTCATCCAGTTGCATTTTTCTTGTGATAGATATGGACGCGTCGGAGAGGGGAGGAATCANATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTAGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367035" ref_strand="+" ref_description="SGN-E367035 [cLPT-5-A15]">
      <seq>tttctcatccatttgcatttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatccacagaagcctgggggtgcacatatcaaaggtcagatcagctacactagacacatggcttcctgaacaagttgcatttatccattcaatgggaaatgagaggtcaaatagttattgggaagcagagctgcctccaaattatgatagagttggtattgagaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109494" stop="105410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109009" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="245" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="106989" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105938" g_stop="105884" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105789" g_stop="105710" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="471" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E367035" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="106989"/>
          <exon e_start="105938" e_stop="105884"/>
          <exon e_start="105789" e_stop="105710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAGGTGATATATCCCTTATCATAACCAAGATGTTCCACATATACTAAAAAATCTGAAATGGTGGTGGGCACTTGCAGTCAATAGTAAAGGTTATGGTAAACTTTAGTGCTCCCTGTTGTTGCTGCTGTAGTAGTGCTGCTTCATATTCTTGACCGAGTTAAAATTCTGTGAACCACTAAGTACGACTGAAGACTCAAAACTCATTCCTTTTTCTCCTGGGACACCCCTGATGAATATATGTTGATTTTTTATCACAAGGATGAGGAACATTTCATATCTATTAATTCATGACTCTACTACTGAAATTCAACATATATCTATCTTTCTTCCTCTGTTATTGCATTGTCTTCTGATTGGAGGAATAGTTGTTATGTACTTCGGTTGGAAATCACTCTTCATTTCCTCATCTTTGTGTTTTATGACTATGATGCAGGAATAATTTCTAACATCTACCCAATCTCATCCTTTTTTTTTTTTGAAAACATGTTATGCACATATGTCGACTGAATGGAGTCATACAACTATTACCCACTATCGTTAGGATGAAGAAAGTCTGAATCTTTTTGCCATTTCATCCCGGGGGAGGGGGTAGGACAACTGCTAGCATTAGGAAAATCCATGGTCGTTATAATCCTTGCGCACTTTCTGTCAATGTGTGGTTGTTAAGTATCTCCTGACTTGGACATGTGACAAGATTTCTCTCATCTTCCTTCAACCTTGGCTAGTTTTTTTTCCCTTCTATTTTTAAATGGTTGTATTTTACTGGCTCATTGTAGTTTGAATCTACTTCTGTATATCTATGGAATAGCCTCTCATTTTTAGTTGAACTCATGAGGTTCTTATTTCCATAGAAGATACGTCTTTTGTAGAACACTATACTTTTTGTATGTTCTCTTACTATTTGTTATGTCACTTGTACATGGGATATAATCCCACATCTTTTACATGGTCAAAAAAAATATCTATATTTTAGAAGAATGACTCATTTTACTCTTGAGCGATTGTTAATTGTTCCATTTTTTGGTTTTGTTCTCTGATTCTCTGAAATTGCAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATTGTAAGGTTTCTGTTTCTGATACTTATCACTGTTTCGATTTCGATCTGATAGATAATTATTTATTACCCTTCTTTTTCTCTTTGGGTTGATATAGCAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTC</genome_strand>
        <mrna_strand>TTTCTCATCCATTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT..............................................................................................CAATGGGAAATGAGAGGTCAAATAGTTATTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305403" ref_strand="+" ref_description="SGN-E305403 [cLEX-15-M3]">
      <seq>tttttcttttgatagatatttacgcgtcggagaggggaggaatcagatcggcgatttttattttccgatagcttctctctccgtcggttaattcgcttaaacccttgctatcgtcatcatgaatgagaaggctaatgttactaaagagcttaatgcgaagcatagaaagatactagaaggacttcttaagttgcccgagaacagggaatgtgcagattgcaaagccaagggtcctagatgggcaagcgtgaacctgggaatatttatatgcatgcaatgctctgggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109477" stop="106718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109177" g_stop="109009" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107276" g_stop="107218" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="228" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107079" g_stop="107018" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="290" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E305403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109177" e_stop="109009"/>
          <exon e_start="107276" e_stop="107218"/>
          <exon e_start="107079" e_stop="107018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAGGTATTTTTTGTTCCGATTCATGATTTCTCTTTTGAATTTCAGTTTATTGTGGTTGATCTAGTTAGATTTGATGATGTTTGGCTAGTGTTTGAGTTTGGTTGATACATCTTTACATGGTTTTATCAGTTAATAGTTGAGATTTGGGGCTTATTGGATCCTTTTAACGCTTGTGTTCTTATGGAACTCCTATTGTAGTTTTATTCTGATAATTCGAGCAGTGAAATACTGATCTAGTTCAACTAGGTGCTTGGAATTATGATTTTGGATGTACATTTTTTCGTAATAGAAGAAGAAAAACAAATATTTACACATTACGCACACAATTGGATTAAAAAAAGGATCTTTAAACTCATGTGCTACCCGAATAAGAGATTTTGAAGAACTGTGATAGGTCTTGAGACAGACAGTCTTGTTAAATTACTGAAAGCAAGCACCTTGCTTTGTACCTCAACTTTCCGTTATTATTAACAAAGATAATATATTTTATCTTAAAGCAAGCACCTTGGTTTAAGTTTGGTTGATGCATCTTATACGCTTTTATCAGTTAATATTTGAGATTTGGGGCTTATCAGGTCCTTTTGCTCCGTTTCCTAAAATTGAACTTCTATTGCTAGTTTTATTCGTGATAATTTGAGCACTGAAATGATAATCTGGTTTAAGCAGGTGCTTGAAATTATAATTTTGGATGTTCATTTTTACCTAAATGAAAAAGAAAAACAGACACTTACTCACACTACTGGATAAAAGAAAAAAATGAGACGGACACATGTAGATTTAGTTAGTGCAATTCCAAACATAGTCAGTTGTTAAATTACTTAAAGCAAGCACCTTGCTGTGTACCTTAACTCTCCACTACTATTAGTAATCTGTCTTTATCTTGATAATTTGAATCACTTCTTTGCACATGACACCAAGACAGTGTCAATATTACATAAGGGTTAGCACTGGCTGTCCAAATCTATCTGTACAAAGAGGAATCTCTTCTTTGTAAAGAGATCTCCTTTGGCTTTCCATCTCTGTCTTTCACTCCTTTAAAAGTTCTACTGTGCCTTCCTCGCCGGATAGTCAGGGAGTGTGTGTAGGTTCTGTCTTCCAAATCACCTTCTTATTAGTCTCAAATATTCCTTTAGTTGTATATGATACATCCAAGAGACGGGTTTTAAGGATATACATCATTTCTTATTGTTACTAATTATTTAAGGACTTAAGGTGAAATTTGTTCATAGTACCATGGCACTATTGACATATTATTCCTTTCTTAGCTCATTAAATTGATTCCAACATGCATATAGCTGGAATCAAGAACCTAAAGTTAAAGCCTTTCATCATTCGTCTACTTTTTTCCGGCTGAAATTACTAGTTAGAAGTGACTCTATCATTAGAGTTAATGAGTTATCCAGAGCTCTCTGATGGAGAGGTGGAGGAGGAAAGATAATTTCTTTATAAGTTAGAGGATGTATGAAAGCAACTTTAGCAAGCTCTCAATGGAAGCTTCTTCTTCATGAATTTAGAATTCTTAACTGCCAAAGCTGAATTAGAATTCTTGTAGGAAGAAAGGCAAAATTTTCTTCTAATCCAAGCAAAAAACACTATTAACCACAACAAGAAAACCACAAGGATGATTATCATCGTTGCAGCTTTTGGTTCTATTATGATTTTTTCATAGTTTACTTACTGGTGGTTTATGTGTGCATGCACATTCGAAGTAACTCATTGCTGTGCTTGTTGACAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAAGTACGTATTAGGATGTATTTGAAACGTGACAAAGTGAAGCTCGGATGCGCTTGTTAATAGATCATTGAATTGAACAGAATTGGCTTTATGTATTTGGAATCCTTGTATTTACTGTATTTTTCTTTTTCTCCAATGCAGGGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCC</genome_strand>
        <mrna_strand>TTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA..........................................................................................................................................GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372013" ref_strand="+" ref_description="SGN-E372013 [TUS-30-M22](-)">
      <seq>gcggcgtggacggcggcggcgaggcaagcagcgaacctatatcgattctcagcttctaaatcagttagctcaacgaagcaaggcgctttacttatccagcggcgcggccttgccggcggtggtgatcatcatggacctccaaaggtgaatttttggcaggatccgatgagtccgtctaaatggaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcttcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109629" stop="112886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109929" g_stop="110052" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110963" g_stop="111033" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="195" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112268" g_stop="112567" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="585" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="605"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E372013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109929" e_stop="110052"/>
          <exon e_start="110963" e_stop="111033"/>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTGGTAAATTAAACTAATTCTCCTGAAATTTATGAAATTTCAATCCGTTCGCAAATTTACTTTCTGCGAGTGAAAGTAATAGTAGATATCCATGGTGTTTGCTTATAATGTTGTGATTCACAGACATTGGATGTTCATATAGGCACTTGTCTTCCTTATTTTCTTTTTTTTTAGTTGTTTTGGAAAATGAAAACTTTTTATGCATATTCTTTGTTTGAGCTGAGTTATGACTATGTAAGCTCGCCTGCAAAAGTCATGTACTAATCTCATTGAGCATAATAATAGTTACTTGGTACTGTTGTACATGATCAACAGTTACAAATGTTTTGCTCTATTTGCTGTGTTTTTTTCATTTATTTCTCGTATAAGTACTGTTGTCTTTTTTGTTTTTACTGATTTGGATTCAAACAAAATGAGCAAGCTGAAGTTTTTATACTACTGGGCTGAGCTTGTAAAATTGGTAAAAGAGAATGCATGTTCTATGGTAACCGGAATTTCCAAAGTTCCATTGCATTTGTTACACACCTCAAAAAACCTTTTTGTCCAATCTAGCAAGATAGAAAATTGTGCACTTCCTATCAATAAAATTTCTACTTTACTTTTTCTACTTAATTCAATATGCAAATTAGACATTTTGTATTGTTTTCTTCATCCTAAATGGCTTACGACCATCTCCATCATTCTATATATTGCTTCCAAGTTTGACTTGGAAAGTGGGGGAAAAGGTTATGTAGAAGAGGTAATCAAAATCCTGGCTTTTTTTTGTGCTCTACCACTAAGAAAACAGTGCAAACATTCAGCTTGGGGAAAAAACAACAACAGTGCAAGCATATGAATGCCACTTACAATTGATTCCAGATGAGGTTGTACTATGAAGTGAGATGATAACTAATATTTTTTCTTTTCAATGCAGATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCATGTGAGTCTTTCAGACCTTTGTGATGTCTTCTCTACATGTTTAAATTATTTTGGTTGTTGGCTTTGACATTATCAGCTTGCTTCACTTGAAATTTCAGCAATTTGCTATGAAACTCTGAATGCTAGATGTCAGATAGAGAATATTGCCAGTACTTCTAATTTTCACCGATACATGGTTGACAACAAGTTTAAGTGGGGATTGGAGTGCCACTTTTGAATTGGCATTCCAGAAGAGCATAGAGAGTATTCACAGTTCACCTGTGATTGTGGGAAATGATTTTCTCTCTACTACTTATTTCACAATGAAGTTTGACTCTTATCTTTTAGACCACTGCAGAACTTACTCCATATCATATGCAGTTATGGCCCCTGCATATGTCTGTTCAATATCTAGAAAGTTTTACTTATTTTTGTAGGTTCCTTTCATATCTATTACCAAGGTTGGGCCTGTTTTGGATAGGCTCTTCAAAGTACGTATTAGTATAGATTAGATTGACAAAATATGAACTTTTGGCAACTTCAGCTTCTAGTTTTGATTGTGAATCACCAAGGTTTGGAGTCGTATCTATAGTTCTTGATGACTTGAAGTTTTTTCAATTGGGTGCAATGTTATCTGTGGATATAACATGAGTGAATTTGTCAAATTGCTATAAAAATTCACACTGTTTACTGTTGTTAGTGTAATTTGATTTTATTGTTTTGGTTGTAACTTGGAAATAGAAATTCTAGTCTCCAGTTAACCACATCTCTGGTCCTTGTAGTTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGA</genome_strand>
        <mrna_strand>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372014" ref_strand="+" ref_description="SGN-E372014 [TUS-30-M22]">
      <seq>cggcgtggacggcggcggcgaggcaagcagcgaacctatatcgattctcagcttctaaatcagttagctcaacgaagcaaggcgctttacttatccagcggcgcggccttgccggcggtggtgatcatcatggacctccaaaggtgaatttttggcaggatccgatgagtccgtctaaatggaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcttcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109630" stop="112886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109930" g_stop="110052" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110963" g_stop="111033" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="194" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="284" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112268" g_stop="112590" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="607" r_length="323" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E372014" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109930" e_stop="110052"/>
          <exon e_start="110963" e_stop="111033"/>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTGGTAAATTAAACTAATTCTCCTGAAATTTATGAAATTTCAATCCGTTCGCAAATTTACTTTCTGCGAGTGAAAGTAATAGTAGATATCCATGGTGTTTGCTTATAATGTTGTGATTCACAGACATTGGATGTTCATATAGGCACTTGTCTTCCTTATTTTCTTTTTTTTTAGTTGTTTTGGAAAATGAAAACTTTTTATGCATATTCTTTGTTTGAGCTGAGTTATGACTATGTAAGCTCGCCTGCAAAAGTCATGTACTAATCTCATTGAGCATAATAATAGTTACTTGGTACTGTTGTACATGATCAACAGTTACAAATGTTTTGCTCTATTTGCTGTGTTTTTTTCATTTATTTCTCGTATAAGTACTGTTGTCTTTTTTGTTTTTACTGATTTGGATTCAAACAAAATGAGCAAGCTGAAGTTTTTATACTACTGGGCTGAGCTTGTAAAATTGGTAAAAGAGAATGCATGTTCTATGGTAACCGGAATTTCCAAAGTTCCATTGCATTTGTTACACACCTCAAAAAACCTTTTTGTCCAATCTAGCAAGATAGAAAATTGTGCACTTCCTATCAATAAAATTTCTACTTTACTTTTTCTACTTAATTCAATATGCAAATTAGACATTTTGTATTGTTTTCTTCATCCTAAATGGCTTACGACCATCTCCATCATTCTATATATTGCTTCCAAGTTTGACTTGGAAAGTGGGGGAAAAGGTTATGTAGAAGAGGTAATCAAAATCCTGGCTTTTTTTTGTGCTCTACCACTAAGAAAACAGTGCAAACATTCAGCTTGGGGAAAAAACAACAACAGTGCAAGCATATGAATGCCACTTACAATTGATTCCAGATGAGGTTGTACTATGAAGTGAGATGATAACTAATATTTTTTCTTTTCAATGCAGATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCATGTGAGTCTTTCAGACCTTTGTGATGTCTTCTCTACATGTTTAAATTATTTTGGTTGTTGGCTTTGACATTATCAGCTTGCTTCACTTGAAATTTCAGCAATTTGCTATGAAACTCTGAATGCTAGATGTCAGATAGAGAATATTGCCAGTACTTCTAATTTTCACCGATACATGGTTGACAACAAGTTTAAGTGGGGATTGGAGTGCCACTTTTGAATTGGCATTCCAGAAGAGCATAGAGAGTATTCACAGTTCACCTGTGATTGTGGGAAATGATTTTCTCTCTACTACTTATTTCACAATGAAGTTTGACTCTTATCTTTTAGACCACTGCAGAACTTACTCCATATCATATGCAGTTATGGCCCCTGCATATGTCTGTTCAATATCTAGAAAGTTTTACTTATTTTTGTAGGTTCCTTTCATATCTATTACCAAGGTTGGGCCTGTTTTGGATAGGCTCTTCAAAGTACGTATTAGTATAGATTAGATTGACAAAATATGAACTTTTGGCAACTTCAGCTTCTAGTTTTGATTGTGAATCACCAAGGTTTGGAGTCGTATCTATAGTTCTTGATGACTTGAAGTTTTTTCAATTGGGTGCAATGTTATCTGTGGATATAACATGAGTGAATTTGTCAAATTGCTATAAAAATTCACACTGTTTACTGTTGTTAGTGTAATTTGATTTTATTGTTTTGGTTGTAACTTGGAAATAGAAATTCTAGTCTCCAGTTAACCACATCTCTGGTCCTTGTAGTTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTT</genome_strand>
        <mrna_strand>CGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286940" ref_strand="+" ref_description="SGN-E286940 [cLES-6-I21]">
      <seq>cggcgtggacggcggcggcgaggcaagcagcgaacctatatcgattctcagcttctaaatcagttagctcaacgaagcaaggcgctttacttatccagcggcgcggccttgccggcggtggtgatcatcatggacctccaaaggtgaatttttggcaggatccgatgagtccgtctaaatggaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcgtcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="109630" stop="112886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109930" g_stop="110052" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110963" g_stop="111033" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="194" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="284" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112268" g_stop="112589" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="606" r_length="322" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E286940" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109930" e_stop="110052"/>
          <exon e_start="110963" e_stop="111033"/>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTGGTAAATTAAACTAATTCTCCTGAAATTTATGAAATTTCAATCCGTTCGCAAATTTACTTTCTGCGAGTGAAAGTAATAGTAGATATCCATGGTGTTTGCTTATAATGTTGTGATTCACAGACATTGGATGTTCATATAGGCACTTGTCTTCCTTATTTTCTTTTTTTTTAGTTGTTTTGGAAAATGAAAACTTTTTATGCATATTCTTTGTTTGAGCTGAGTTATGACTATGTAAGCTCGCCTGCAAAAGTCATGTACTAATCTCATTGAGCATAATAATAGTTACTTGGTACTGTTGTACATGATCAACAGTTACAAATGTTTTGCTCTATTTGCTGTGTTTTTTTCATTTATTTCTCGTATAAGTACTGTTGTCTTTTTTGTTTTTACTGATTTGGATTCAAACAAAATGAGCAAGCTGAAGTTTTTATACTACTGGGCTGAGCTTGTAAAATTGGTAAAAGAGAATGCATGTTCTATGGTAACCGGAATTTCCAAAGTTCCATTGCATTTGTTACACACCTCAAAAAACCTTTTTGTCCAATCTAGCAAGATAGAAAATTGTGCACTTCCTATCAATAAAATTTCTACTTTACTTTTTCTACTTAATTCAATATGCAAATTAGACATTTTGTATTGTTTTCTTCATCCTAAATGGCTTACGACCATCTCCATCATTCTATATATTGCTTCCAAGTTTGACTTGGAAAGTGGGGGAAAAGGTTATGTAGAAGAGGTAATCAAAATCCTGGCTTTTTTTTGTGCTCTACCACTAAGAAAACAGTGCAAACATTCAGCTTGGGGAAAAAACAACAACAGTGCAAGCATATGAATGCCACTTACAATTGATTCCAGATGAGGTTGTACTATGAAGTGAGATGATAACTAATATTTTTTCTTTTCAATGCAGATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCATGTGAGTCTTTCAGACCTTTGTGATGTCTTCTCTACATGTTTAAATTATTTTGGTTGTTGGCTTTGACATTATCAGCTTGCTTCACTTGAAATTTCAGCAATTTGCTATGAAACTCTGAATGCTAGATGTCAGATAGAGAATATTGCCAGTACTTCTAATTTTCACCGATACATGGTTGACAACAAGTTTAAGTGGGGATTGGAGTGCCACTTTTGAATTGGCATTCCAGAAGAGCATAGAGAGTATTCACAGTTCACCTGTGATTGTGGGAAATGATTTTCTCTCTACTACTTATTTCACAATGAAGTTTGACTCTTATCTTTTAGACCACTGCAGAACTTACTCCATATCATATGCAGTTATGGCCCCTGCATATGTCTGTTCAATATCTAGAAAGTTTTACTTATTTTTGTAGGTTCCTTTCATATCTATTACCAAGGTTGGGCCTGTTTTGGATAGGCTCTTCAAAGTACGTATTAGTATAGATTAGATTGACAAAATATGAACTTTTGGCAACTTCAGCTTCTAGTTTTGATTGTGAATCACCAAGGTTTGGAGTCGTATCTATAGTTCTTGATGACTTGAAGTTTTTTCAATTGGGTGCAATGTTATCTGTGGATATAACATGAGTGAATTTGTCAAATTGCTATAAAAATTCACACTGTTTACTGTTGTTAGTGTAATTTGATTTTATTGTTTTGGTTGTAACTTGGAAATAGAAATTCTAGTCTCCAGTTAACCACATCTCTGGTCCTTGTAGTTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTT</genome_strand>
        <mrna_strand>CGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCGTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357707" ref_strand="+" ref_description="SGN-E357707 [cTOS-24-J11]">
      <seq>gaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcttcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaccacagttttctttatgtgtcgttctaacccatttgaatgtctatgtctgggttgatggagctcaatgagtcagatgcagcaagctcattagcttcgtcaagctgtttctatctgttgtgcttttggtcatttggtgcctctttccatgtatgttaagactatggggagatggtnaaagattacctatttatacaattctagctattgaaggcaggaaactgaatgtaataagttgatagaaacatgtaacatttttaagttatggtttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="111490" stop="113162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112268" g_stop="112862" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="700" r_length="597" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E357707" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTAT-GGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACA-TTTTAAGTTATGGTTTTTACACAACATTAA</genome_strand>
        <mrna_strand>TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGGAGATGGTNAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTTAAGTTATGGTTTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350095" ref_strand="+" ref_description="SGN-E350095 [cTOS-4-F6]">
      <seq>gaaagaagagcattttgtgatcgtctctcttactggttgggggttggccttctatggaggttataagctcttcacaaagggaaagaaagaggagaaggaagagaaagttggtgaaggatcccactaatatttgacgtgccgaatgccttgaataaagaagttagaaagggctatgtggtcctcaatttttgccatgatgaatattacaatgacttttcccccatttcctccacttcccttgttgggactgaattgcatatgaaatactggacaatcaactatgtaatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctgaggatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaccacagttttctttatgtgtcgttctaacccatttgaatgtctatgtctgggttgatggagctcaatgagtcagatgcagcaagctcattagcttcgtcaagctgtttctatctgttgtgcttttggtcatttggtgcctctttccatgtatgttaagactatgggagatggtaaaagattacctatttatacaattctagctattgaaggcaggaaactgaatgtaataagttgatagaaacatgtaacattttaagttatggtttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="111490" stop="113152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111794" g_stop="111883" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112268" g_stop="112852" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="688" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E350095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111794" e_stop="111883"/>
          <exon e_start="112268" e_stop="112852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAGGTATATTCCTCTCACAGCTAGCAACTTCATTCAAATTTTTTGCTGTTGCTGGTAGTGCTAAAGCATATGTTCCGATGTCATTATCTCTTATACGCCCATATTAAAAATGCCTACTGTATCTATTATTATGAAATAAGAATGACATGATAGTAGAAGACCAAATGATCAACCATATCATATGGTTTTACTACATATGCTAGGTAAATCTTACCTTACCTTATGAGATAAATAGGTATATTTGAGTTAACTGAACGTAGCAATTTTGTCATTTGTACAGAGTATATAGACATTTCACCTTGTACAGACTACTATTCTCAAACTGTTCTTCAAATATAATGTTTTCCATATCTAATATCCGATCTGATTTGCTTCATCTTATGACAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTAC</genome_strand>
        <mrna_strand>TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215408" ref_strand="+" ref_description="SGN-E215408 [cLEL-20-I10](-)">
      <seq>taatttctttttttgctttctgtagaatgttggttcatttaggaacattttgcctgctaagaatatgatgtttcttcttgttggaacaactttcgctacccatttgcataatgatcatgagtatgttgaagaaaccacagttttctttatgtgtcgttctaacccatttgaatgtctatgtctgggttgatggagctcaatgagtcagatgcagcaagctcattagcttcgtcaagctgtttctatctgttgtgcttttggtcatttggtgcctctttccatgtatgttaagactatgggagatggtaaaagattacctatttatacaattctagctattgaaggcaggaaactgaatgtaataagttgatagaaacatgtaacattttcagttatggtttttacccccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="+" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="112148" stop="113154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112448" g_stop="112852" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="431"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="+" ref_id="SGN-E215408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112448" e_stop="112852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTAC</genome_strand>
        <mrna_strand>TAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTAAGAATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTCAGTTATGGTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717068" ref_strand="+" ref_description="SGN-E717068 [FB18DD03]">
      <seq>agggtctactttaaatgatgaggttcagctttgccctttctgtactcagccattctcagttgttggcaataagttcgtgagagacccagtaacgttctctaaccagtcaactacatttggtcaagcattcggtggtttcagtactcgttctaagaaaggtaagaattcctctgtcggaattgttgatatagaagcagaagttaaggacgcggactaggcagtggtctccagtcatacagtagcatatgggattatgagaagcagcagcagcagctgaacgggaagaagacaagaacataccatatcagtatgaagagaagcttctcacaagcactgtgctgttatgaaataccgaagaacaccacatttagcataggttatcatgcatgactgtacagtcgcgaacacatgatcaacatattatagaataatgctgattatgttagaaaaaagtgtgtgatactattatacttgattgcagttgccctatagtatagcattggataagcttatcatgtttgtgaaaatactttctagcttctcatctgttgattgtattatgatgtagtaaacaataacataccccgtgtaatttgtagttctacaagtgggatctttgaaggttgagatgtatgcacaccttatcctcgcttccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="115555" stop="112633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115307" g_stop="115305" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115304" i_stop="115255" i_length="50">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115254" g_stop="115199" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="59" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115198" i_stop="114548" i_length="651">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114547" g_stop="114449" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="158" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114448" i_stop="113900" i_length="549">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113899" g_stop="113810" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="248" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113809" i_stop="113332" i_length="478">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113331" g_stop="112933" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="658" r_length="410" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="669"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E717068" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115307" e_stop="115305"/>
          <exon e_start="115254" e_stop="115199"/>
          <exon e_start="114547" e_stop="114449"/>
          <exon e_start="113899" e_stop="113810"/>
          <exon e_start="113331" e_stop="112933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCTGGTTGTTTTTGTTAGTTCCTCATAGCATTGATTTTCACCCAATGCAGGTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAGGTTAAAATTGATTCTCTTAGTTGGCTTGTCTCCCTTGTTTTGCCAACTTCCTCATAGCTGATCAGTTGGTGGCACTCTTGTTTCATTTAGTTACACTATTGTTCTCATATTTGTTTTTAAGAGAGCTGATGGAATTTGCACACAGAACAGATTTATCGAAATTCAACTACCAAATAGCTCGTTTCATATGTGACCCTAAATAAAATTTATGTACCCTGTCTCCACCTCATAATCTTATTCCTTTGTCCCAATGCATATATGCAAGGTAAACCATCAGAAGTTCACAGCTCTTCATGTGGCTTGTTTGAATTGCACTTAGGCTTACTGTATCGAGCTCCCAGTCCTCGATATAAGTAGAGCTTCGTCTATTTCTCTCCATCGTGGTCTTTTGAATCCTTGGACTATATACATATTAGATATTTTTTAATGGTTGTTAAGCACTTGAATGCAACTCAGATGTTGCTAGGCGATAATTAACATCTTGAGAGTGTTGGATGTGTTTGACTTTTCTTTCTGTTATCTTGAACTTCCTTGATGTAAATTGATTTTTTTATCATTTCAAATCTTTGTTCAAACATTGATGTGGGTTATATCATTAGTAACTGATGCAAGCTAAGCTTGTTATTTGAGATATTCCATGCATATTTGCAGTTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCCAACCAGTCAACTACATTTGGTCAAGCATTTGGTGATTTCAGTACTCGTTCTAAGAAAGGTTCATCTTTCTTACTCTTCTTAAAACATTTACTGGTTATGGTTTCCAGGTGCATAATCCATTTACCTAAACTTGGTGCATAATAAGGGCACTAACAGTCTTATCATTCATGAAGTTCTTTTTTCTTCTTTTTTTTTTGGAATATCGTTCATCTGATGAAGTTAATGCTGCCTCTCCTGTAAATAAGCTCGACTTTTGCAGTTCTCCTTCTGGAGAGTTATGAATTTCTTCAAGAAAGAAAACTTTCTTTTCTAATTTCTTTGGGATCCTTATGTACTCTATGAGTGCGGGGATTCAAATATTTACTTGAGATTAAAGCATTTAAAAGGCTTAAAATTCCAAGCGAACTTCATTTATGTTTCTTCTCATCACACGTTTTTGTGATAAACTTCAAATAATCCTCGTAAGAATTGATTTAACTGCTAGACCGCGGAATACTGACAAAGTTTGTGCAATTTTAGGCCATTACGGTTTTAAATCATGATCCTAGGACTGTCCCATAATATATCTGGATTAGAACTTACTTCACCTCATCTATTTACTTTACAGGTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATGGTAAAGCACTCAGATTATTTTTGCATCTTTGCCTATGCATGTGAATTGTGATGGACAAAACAGTTCAAATAAAACTGTACCTTCAAAATTTGTCTTTTTATTTGGAAAGAAAGTCCATGCACAATCGTTTTGTTGTTAGTCTGTAATGACTCCATAGGCTACCAGTGTAGAAACGATGTCGATAATAGAACTGTTTGGACACGGTGTATAATCTGTGTTTTCTGTCTATCTCTGCTATCCTCACACGGGGAGGGGGTGGGGGGTGGGGTGTTCAGAATTGACCTATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGT-TG-----ATTGCAGTTG-CCCCA-TAG---TATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGATGTATGCACACCTTATCCTCGCTTTCCTA</genome_strand>
        <mrna_strand>AGG..................................................GTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCTAACCAGTCAACTACATTTGGTCAAGCATTCGGTGGTTTCAGTACTCGTTCTAAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATATCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACCGAAGAACACCACATTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATGATCAACATATTATAGAATAATGCTGATTATGTTAGAAAAAAGTGTGTGATACTATTATACTTGATTGCAGTTGCCCTATAGTATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGAGATGTATGCACACCTTATCCTCGCTTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314906" ref_strand="-" ref_description="SGN-E314906 [cTOA-31-A16]">
      <seq>tatactatagttgttatcgttggcttctggtatgacataatttgctgtatataattgatttgaacgtagacattatacagcttcccaagataacaacatggatgttgatttgttcttttagcagtcctttgttggtcttgtcctattatgtatgaggctgcttctttttcttctttcataaaaatcatcatctagggattatgagaagcagcagcagcagctgaacgggaagaagacaagaacataccatgtcagtatgaagagaagcttctcacaagcactgtgctgttatgaaatactaaagaacaccacgtttagcataggttatcatgcatgactgtacagtcgcgaacacataatcaacatattatagagtattgctgattatgttagaaaaaagtgttgattgcagttgccccatagtataccaatagcattggataagcttatcatgtttgtgaaaatactttctagcttctcatctgttgattgtattatgatgtagtaaacaataacataccccgtgtaatttgtagttctacaagtgggatctttgaaggttgggatgtatgcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="113826" stop="112652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113526" g_stop="112961" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="595"/>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E314906" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113526" e_stop="112961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACC-ATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</genome_strand>
        <mrna_strand>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCAATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746237" ref_strand="+" ref_description="SGN-E746237 [GI|47104817]">
      <seq>cgcccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttgtatgttatgttggatttgcttgttgatgttataatagattcctactacagatcaactagaacattttgtgagtgttaattagcactgaatccctttcattctgaggcaatgaatacttcatttgaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122545" stop="118394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122245" g_stop="122226" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="317" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="440" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="731" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="118691" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="1163" r_length="432" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E746237" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122245" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="118691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAACAGAGAAGCA</genome_strand>
        <mrna_strand>CGCCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357879" ref_strand="+" ref_description="SGN-E357879 [cTOS-24-F7]">
      <seq>cattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttgtatgttatgttggatttgcttgttgatgttataatagattcctactacagatcaactagaacattttgtgagtgttaattagcactgaatccctttcattctgaggcaatgaatacttcatttgaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120181" stop="118401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119881" g_stop="119619" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119122" g_stop="118700" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="686" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E357879" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119881" e_stop="119619"/>
          <exon e_start="119122" e_stop="118700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAAC</genome_strand>
        <mrna_strand>CATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356436" ref_strand="+" ref_description="SGN-E356436 [cTOS-20-N12]">
      <seq>ctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttgtatgttatgttggatttgcttgttgatgttataatagattcctactacagatcaactagaacattttgtgagtgttaattagcactgaatccctttcattctgaggcaatgaatacttcattttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120208" stop="118407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119908" g_stop="119619" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119122" g_stop="118705" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="708" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E356436" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119908" e_stop="119619"/>
          <exon e_start="119122" e_stop="118705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAAT</genome_strand>
        <mrna_strand>CTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354981" ref_strand="+" ref_description="SGN-E354981 [cTOS-19-D9]">
      <seq>ctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttaatggtctggtatcactaagcataataaaatctcactatttctggcttgaggtggagcgccttcacgaaggtatgcagaatgaactaatgatcctggagatgggtttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttggatgttatgttggatttgcttgttgatgttataatagattcctactacagatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120208" stop="118476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119908" g_stop="119619" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119122" g_stop="118776" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="637" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E354981" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119908" e_stop="119619"/>
          <exon e_start="119122" e_stop="118776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACT</genome_strand>
        <mrna_strand>CTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAATGGTCTGGTATCACTAAGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCACGAAGGTATGCAGAATGAACTAATGATCCTGGAGATGGGTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGGATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250052" ref_strand="+" ref_description="SGN-E250052 [cLEG-4-G11]">
      <seq>tttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcctcatattgcttgtatgttatgttggatttgcttgttgatgttataatagattcctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120098" stop="118486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119798" g_stop="119619" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119122" g_stop="118786" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="517" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E250052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119798" e_stop="119619"/>
          <exon e_start="119122" e_stop="118786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTA</genome_strand>
        <mrna_strand>TTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355108" ref_strand="+" ref_description="SGN-E355108 [cTOS-18-L21]">
      <seq>ataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtgttctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaactagtgatcctggagatggttttcttcgctatccttatgcgtcatgcatacagtgcagcgccatatcgcgcagaagctgttacaactacttcagaagatgctacttctggagataaaaagaatgagtgattatgcaacatgtattgttgtaaaaaaattatcttcagacatcactcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120694" stop="118545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120394" g_stop="120320" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="366" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119122" g_stop="118845" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="644" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E355108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120394" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="118845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCC</genome_strand>
        <mrna_strand>ATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717844" ref_strand="+" ref_description="SGN-E717844 [FC02DF07]">
      <seq>aatcggccgaattgattgcatttgacgcccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcacttttttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccaccatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcgttgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtattctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttcaggaaggtatgcagaatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122559" stop="118725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122274" g_stop="122226" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="342" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="465" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="756" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="119025" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="854" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E717844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122274" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="119025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACT</genome_strand>
        <mrna_strand>AATCGGC-CGAATTG---ATTGCATTTGACGCCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTTTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCACCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCGTTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTATTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710456" ref_strand="+" ref_description="SGN-E710456 [FA55BH11]">
      <seq>cccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcacttttttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccaccatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcgttgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtattctggtatcactaggcataataaaatctcactatttctggcttgaggtggagcgccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122543" stop="118746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122243" g_stop="122226" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="315" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="438" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="729" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="119046" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="806" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E710456" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122243" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="119046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCA</genome_strand>
        <mrna_strand>CCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTTTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCACCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCGTTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTATTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706473" ref_strand="+" ref_description="SGN-E706473 [FA30AC05]">
      <seq>gaatattattcacaagaatcccaacaatttgttcattgcatttgacgcccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcacttttttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccaccatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcgttgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtattctggtatcactangcataataaaatctcactatttctggcttgaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122590" stop="118756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122290" g_stop="122226" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="362" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="485" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="776" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="119056" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="843" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E706473" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122290" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="119056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGG</genome_strand>
        <mrna_strand>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTTTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCACCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCGTTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTATTCTGGTATCACTANGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700701" ref_strand="+" ref_description="SGN-E700701 [FA13DF08]">
      <seq>cccctttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcacttttttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccaccatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcgttgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctggcagggcattctgcttagtattctggtatcactacgcataataaaatctcactatttctggcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122543" stop="118760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122243" g_stop="122226" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="315" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="438" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119619" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="729" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119122" g_stop="119060" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="792" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E700701" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122243" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119619"/>
          <exon e_start="119122" e_stop="119060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAGGTACGTCTCTCACCTTTTCTTGCAATCTTATCTTTTGCTTTCTTGTAATTTACATGTTGGATTTCAAATTTTGCTGCTATTTGCATTGTGGGACCTGAATTTTTTGATTAGCATGTTCCACATCAACAACGAACCTAGTGTAGTTCCACAAGTGAGGTCTAGGGAGGGTGGTGCATATGCAACCATAATTCCACCTTGTAAAGGTAGAGAGAAGGCTGTTTTCTAATAGTATAAAAATCAAACCATCAGTGCTAAATTTCTTTTTGAAGTCTGCTAGCATGTTCTACAACAACAATGAAACTAAGTGTAATCCCACAGTAGGGTCTGGGAAGAGTGGTGTGTGTGCAGCCTTACCCCTATATCTTTAAAGATAGAGAAGATGTTTCCACTAGACTCGCAACTCATCAGAATGTACTATATTTCCAAATGAAAATCAAATATTAATATCTGCTTTTACATTTTGTTATGCTAAAAAGAAACTTGTACCATTCTGCAGGGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAG</genome_strand>
        <mrna_strand>CCCCTTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTTTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCACCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCGTTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCTGCTTAGTATTCTGGTATCACTACGCATAATAAAATCTCACTATTTCTGGCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212094" ref_strand="+" ref_description="SGN-E212094 [cLEC-75-M21]">
      <seq>ccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgcgaaggagttggcgcctcacaagccactagccaagttcctgtgtgtcaaaggaattgtctttttcgtcttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122542" stop="119322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122242" g_stop="122226" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="314" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="437" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119622" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="725" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E212094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122242" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGG</genome_strand>
        <mrna_strand>CCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288252" ref_strand="+" ref_description="SGN-E288252 [cLES-16-K19]">
      <seq>actttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatatccgtttcactggcattgtactctcttgtggttttctaccacgtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="121141" stop="119395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="302" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="425" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119909" g_stop="119695" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="640" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E288252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGC</genome_strand>
        <mrna_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310506" ref_strand="+" ref_description="SGN-E310506 [cTOA-9-K23]">
      <seq>tttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="121141" stop="119444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="300" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="423" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119909" g_stop="119744" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="589" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E310506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATAT</genome_strand>
        <mrna_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298414" ref_strand="+" ref_description="SGN-E298414 [cLET-41-L4]">
      <seq>gcccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctagttgggttagctggacctttaccatcattttaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122544" stop="119446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122244" g_stop="122226" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="316" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="439" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119746" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="603" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E298414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122244" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACAT</genome_strand>
        <mrna_strand>GCCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335285" ref_strand="+" ref_description="SGN-E335285 [cTOE-1-D11]">
      <seq>gcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtaccctaattgggttagctggacctttaccatcattttaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="120949" stop="119447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120649" g_stop="120545" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="228" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119909" g_stop="119747" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="391" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E335285" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120649" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACA</genome_strand>
        <mrna_strand>GCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAATTGGGTTAGCTGGACCTTTACCATCATTTTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365287" ref_strand="+" ref_description="SGN-E365287 [cLPT-2-I23]">
      <seq>ctcgtgccgaattcggcacgaggagactctgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagtatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtacgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctctattttaatgattgttttacaaatgtttggagtgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="121141" stop="119486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="327" r_length="297" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="450" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119909" g_stop="119786" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="574" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E365287" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACC</genome_strand>
        <mrna_strand>GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGTATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTACGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212498" ref_strand="+" ref_description="SGN-E212498 [cLEC-74-M1]">
      <seq>ccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122542" stop="119550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122242" g_stop="122226" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="314" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="437" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119851" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="496" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E212498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122242" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCA</genome_strand>
        <mrna_strand>CCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305405" ref_strand="+" ref_description="SGN-E305405 [cLEX-15-M9]">
      <seq>cccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaattaagggaagacagattcaccactcattcccaatgacactcttccagcctcacactgctcatttgaaccatcatacattgaagcttctcaagaactggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122543" stop="119554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122243" g_stop="122226" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="315" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120320" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="438" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119909" g_stop="119854" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="494" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E305405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122243" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120320"/>
          <exon e_start="119909" e_stop="119854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAGGTACAACGTGTAATCTAAAGTTATGTGTACATATCACTCTTATATATCATCAACATTGCATGCTTATGAGAAAATTACGATGATGCCAACAAGGATGAAAACTAAATTACATTGTGTTCAGCATGCCTTATAGAGTATATATACTGTTAAGCACAGAGTTGCACTATTTCAATCCTTTTGCACCGATGTATAGGCACACTCCTGCATTGAGTTGCTTACTAAGTTTACATGGACAAATTATCATTACTGTGTAGTATGTTTACAAACTCAGATGTTAGGCTTATAAGTATTCAGTGCTCTCTTTCTTTTCTCTTTGAGACCAAAAAGCATGATGCCTCATAGAAGCTTACATATACAGTTTTAGTGTTGTCATGGTACTCGGTCACAAGCTAACTGTTGTGTCACTGCAGCCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATG</genome_strand>
        <mrna_strand>CCCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310362" ref_strand="+" ref_description="SGN-E310362 [cTOA-1-I18]">
      <seq>agactttgtcataaaagtacaaggtcaacagctgaggaaactagaggtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacatagtccctgatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122164" stop="120066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121864" g_stop="121826" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="46" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121825" i_stop="120842" i_length="984">
            <donor d_prob="0.722" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="343" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120366" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="420" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E310362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121864" e_stop="121826"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAAT</genome_strand>
        <mrna_strand>GTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200779" ref_strand="+" ref_description="SGN-E200779 [cLEC-9-K16]">
      <seq>ccatttctagagactttgtttgattttggttttcttgttggctaacaacaaatatggaattggatctggatcgtgggcaagtcacactgatagcatccagtatatgtcttatgctgactttacatttcagcatacagctagtgacagaacattttacgtcatggaagaagcctaaagagcaaaaggccataattattatcgtcctcatggcacctttgtatgctattgtctccttcattgggttggtcgatttcatgggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgtgaatggcttaagttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122542" stop="120241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122242" g_stop="122226" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120841" g_stop="120545" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="314" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120442" g_stop="120425" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="334" r_length="20" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E200779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122242" e_stop="122226"/>
          <exon e_start="120841" e_stop="120545"/>
          <exon e_start="120442" e_stop="120425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTAGAGACTTTGTAAGTACTTGTCTTTCTCTTTCTTACCCTTTTTTCCTCTCTTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATATCATCCATACTAGTGGGGTTACACCGGAAGGTAGGATGCGTACATCCTACTCCGACCTCACTTTGGGATTACACAGGGTATGCTGTTTTGTCGTTGTACTAGTGATAGATACTATGATACTTTGGATTCCTCATATTTCTCATTGTAGCAAGGACTAAGTATTGATGTCTATAAGTACTCTTTTATTTTAACCTTTCCACTTACCTTAACTCTATCTTGAGCTCATTAACAGATTTGTTCTATTACTGTGAGCATGTGAAAAAGAAATCTTTTATGGTAATTTATCATTGATTGGGTGCCAATTAAGAACTGCGAGCACTATTAAGTCATGTTTTACCAGATGGCTTAATTTAGATTGATTGGTTAACGGAGCTATATCCAATTATTGATCCAAAATGGGATGGATTGGGAACATTGAGTGCCTCTGAAGGGTTAGTTTAGGTCATGAATGAGTCAATCTGCCCTTCTTGTTAAAACATCAAGTTGAAGACCGAAGACAAAGCTGGGTTGTCCTCGCAAGTATAACCTTTCAGATAACGAATGATGATATAATTGGGTTAAAACTGTCTGTATGAGAAGTCAGTGTTACAGATTTGTCATTTGGGTTTCTCAATTGTTGCAAGTGGAAGTGGTGATATATCCTGGTTGTTGACATGAGTGAAGGTCGAGGAATAGAAATGAAATTTGGTGGAATGAATTAAATGATGGTGGATTGGTGGCTATCTAAATAAATCAGTAGATATGAATTTTGGGTAATAATGAAAGTTGTACTTCTGTATACAAATGAAATTCTTGTCTATTTTATTTCCCTACATTTCTCTTGAAATATAAAAGCTTAACTCGAAATGTGCAATTTAGTCCTGATAAGTCTTAACACCACTGTGCAGGTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATTGTAAGTATAGCCAAGTTAACATTTTCTGCGTGTATCAAGCATCACTTGTTGAGTTGTGTTCTTGTCAGAATTCTTTGCTCACTTGTGTTCTATGTGATACAGGTG-ATGGC-TAAGTTCCTG</genome_strand>
        <mrna_strand>CCATTTCTAGAGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT......................................................................................................GTGAATGGCTTAAGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322202" ref_strand="+" ref_description="SGN-E322202 [cTOB-24-H21]">
      <seq>ttctttagctcctacactcattagctatactttttatgttgaagtcattatgtattttgttgggattaaccataagaagtcacttatgtagatattttacttgtttagattacaatattgttgaaagatcaaatttttacttttcttgaaaatgttgcatcggttttttagtgcagcagctggatccttgatgtttttttcttgggtgaatcttgaaataaccatgattgtgttgtagcctagctagtttcaatatagcttgtttgagttcaaattggccttgtgatttgtaaagggtttgtctttttgatgatttttaggtcataaaagtacaaggtcaacagctgaggaaactagaggggaggcagagtgattagcttagtttgtaatttcatattgttcttgggcaaaagacccaaaagttactcactgaggcactcactgttagctaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0140O20-7kUBL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0140O20.1" temp_strand="-" temp_description="C07HBa0140O20.1  AC210357.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0140O20 upload_account_name:france">
        <position start="122484" stop="121428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122184" g_stop="121728" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0140O20.1" gen_strand="-" ref_id="SGN-E322202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0140O20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122184" e_stop="121728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</genome_strand>
        <mrna_strand>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGGGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>243</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14598" PGL_stop="15062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14598" e_stop="15062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14598" e_stop="15062" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14598" stop="15062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTAGGCATGGTTACTTTGGATTGAAGGCAACGCGTTGGAACTGATAGACGAATGTATCAAAGAATCCTTTTCAGAATCTCAAGTGTTGAGATGCATCCAGGTTGGTTTGTTATGCGTCCAAAAACTCCCCGAGGATAGGCCTACAATGGCATCAGTAGTTTTCTGGTTAGGCAATGAAGGTCTGGTTCTTCCTCAACCAAAGCGACCTGGTTTTTTCATTGAGAGGAATTCAATGGATTCAACTAAATCATCAACTGATGAAGGATATTTAAGTAACAACGTATCGATAACAATCCTGGAGCCAAGATAGATATAAGTTCCAATAATTGGAACTTTTGAAATGTATTCACTTTGTCCTGTTTTGTCAAACACTGATAGTGTATATGTGACTATATATGAGGTGAATTGACATGTATTCTTTCTGTACAATAAGAGATGTAATGAATTTGCCTATTCTGAGT</gDNA_template>
            <first_frame> *  F  R  H  G  Y  F  G  L  K  A  T  R  W  N  *  *  T  N  V  S  K  N  P  F  Q  N  L  K  C  *  D  A  S  R  L  V  C  Y  A  S  K  N  S  P  R  I  G  L  Q  W  H  Q  *  F  S  G  *  A  M  K  V  W  F  F  L  N  Q  S  D  L  V  F  S  L  R  G  I  Q  W  I  Q  L  N  H  Q  L  M  K  D  I  *  V  T  T  Y  R  *  Q  S  W  S  Q  D  R  Y  K  F  Q  *  L  E  L  L  K  C  I  H  F  V  L  F  C  Q  T  L  I  V  Y  M  *  L  Y  M  R  *  I  D  M  Y  S  F  C  T  I  R  D  V  M  N  L  P  I  L  S </first_frame>
            <second_frame>  N  L  G  M  V  T  L  D  *  R  Q  R  V  G  T  D  R  R  M  Y  Q  R  I  L  F  R  I  S  S  V  E  M  H  P  G  W  F  V  M  R  P  K  T  P  R  G  *  A  Y  N  G  I  S  S  F  L  V  R  Q  *  R  S  G  S  S  S  T  K  A  T  W  F  F  H  *  E  E  F  N  G  F  N  *  I  I  N  *  *  R  I  F  K  *  Q  R  I  D  N  N  P  G  A  K  I  D  I  S  S  N  N  W  N  F  *  N  V  F  T  L  S  C  F  V  K  H  *  *  C  I  C  D  Y  I  *  G  E  L  T  C  I  L  S  V  Q  *  E  M  *  *  I  C  L  F  *   </second_frame>
            <third_frame>   I  *  A  W  L  L  W  I  E  G  N  A  L  E  L  I  D  E  C  I  K  E  S  F  S  E  S  Q  V  L  R  C  I  Q  V  G  L  L  C  V  Q  K  L  P  E  D  R  P  T  M  A  S  V  V  F  W  L  G  N  E  G  L  V  L  P  Q  P  K  R  P  G  F  F  I  E  R  N  S  M  D  S  T  K  S  S  T  D  E  G  Y  L  S  N  N  V  S  I  T  I  L  E  P  R  *  I  *  V  P  I  I  G  T  F  E  M  Y  S  L  C  P  V  L  S  N  T  D  S  V  Y  V  T  I  Y  E  V  N  *  H  V  F  F  L  Y  N  K  R  C  N  E  F  A  Y  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14606" stop="14911"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWLLWIEGNALELIDECIKESFSESQVLRCIQVGLLCVQKLPEDRPTMASVVFWLGNEGLVLPQPKRPGFFIERNSMDSTKSSTDEGYLSNNVSITILEPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18478" PGL_stop="19240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18478" e_stop="19240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="18478" e_stop="19240" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="19137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18498" stop="19240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18549" stop="19045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACACATACACACACAACATCTCTTTAGTGATCGCGAGAAATGGAAGATCCTTATGGATTTGAAGATCATTTCCCTTCAATGATGGAGAGATTAGGCGCGGAAGGATTCATGAGGGAGCTTTGCAATGGATTTTGTTTACTTATGGATGTGAGTATAGGGCTAATAACATATGAAAGTTTGAAGAGAAACACTATGAATCTTGGTTTAAATGATTTAAGAGATGATGAGTTGATTTACATGTTGGCTGAAGGAGATTTGGATGGTGATGGAGCACTTAATCAAATGGAATTTTGTATTCTCATGTTTAGATTGAGTCCTGGTTTAATGGATGGATCTAAGCAATACATGGATGATGTGGGGCTTATTCATTTCCAACCCTAACTAGGTTTTTTATTAATTCCTTAATTTGTGTGTTTTATTGATGTAACTTGTATTAATATCATGAGAGATATGATGATGATGATGATGAAGATCTTATGCCAAATAAATAATTCTCCATGTATATCTATTTGTGTGTGTTGATTTGAAGGAGTGATGATTATTAATTATCAAACTACAATATCAGGCATTTCCAACTTCATAATGTTTCATCTTTTGTACGTTTGTTCAGTAAAATAATGAAGGATATGCCTTATTAATGGGGAATAGATGAAAGGGTTTGTTATATGTTGTCTAGGTCGATTAGAAGGTGTAAAAACATCTCGATTCTTTTTAAATTATTTTATTTTGGGATGGATGACTAATTTGGGGCTTATGATTC</gDNA_template>
            <first_frame> T  T  H  T  H  T  T  S  L  *  *  S  R  E  M  E  D  P  Y  G  F  E  D  H  F  P  S  M  M  E  R  L  G  A  E  G  F  M  R  E  L  C  N  G  F  C  L  L  M  D  V  S  I  G  L  I  T  Y  E  S  L  K  R  N  T  M  N  L  G  L  N  D  L  R  D  D  E  L  I  Y  M  L  A  E  G  D  L  D  G  D  G  A  L  N  Q  M  E  F  C  I  L  M  F  R  L  S  P  G  L  M  D  G  S  K  Q  Y  M  D  D  V  G  L  I  H  F  Q  P  *  L  G  F  L  L  I  P  *  F  V  C  F  I  D  V  T  C  I  N  I  M  R  D  M  M  M  M  M  M  K  I  L  C  Q  I  N  N  S  P  C  I  S  I  C  V  C  *  F  E  G  V  M  I  I  N  Y  Q  T  T  I  S  G  I  S  N  F  I  M  F  H  L  L  Y  V  C  S  V  K  *  *  R  I  C  L  I  N  G  E  *  M  K  G  F  V  I  C  C  L  G  R  L  E  G  V  K  T  S  R  F  F  L  N  Y  F  I  L  G  W  M  T  N  L  G  L  M  I  </first_frame>
            <second_frame>  Q  H  I  H  T  Q  H  L  F  S  D  R  E  K  W  K  I  L  M  D  L  K  I  I  S  L  Q  *  W  R  D  *  A  R  K  D  S  *  G  S  F  A  M  D  F  V  Y  L  W  M  *  V  *  G  *  *  H  M  K  V  *  R  E  T  L  *  I  L  V  *  M  I  *  E  M  M  S  *  F  T  C  W  L  K  E  I  W  M  V  M  E  H  L  I  K  W  N  F  V  F  S  C  L  D  *  V  L  V  *  W  M  D  L  S  N  T  W  M  M  W  G  L  F  I  S  N  P  N  *  V  F  Y  *  F  L  N  L  C  V  L  L  M  *  L  V  L  I  S  *  E  I  *  *  *  *  *  *  R  S  Y  A  K  *  I  I  L  H  V  Y  L  F  V  C  V  D  L  K  E  *  *  L  L  I  I  K  L  Q  Y  Q  A  F  P  T  S  *  C  F  I  F  C  T  F  V  Q  *  N  N  E  G  Y  A  L  L  M  G  N  R  *  K  G  L  L  Y  V  V  *  V  D  *  K  V  *  K  H  L  D  S  F  *  I  I  L  F  W  D  G  *  L  I  W  G  L  *  F </second_frame>
            <third_frame>   N  T  Y  T  H  N  I  S  L  V  I  A  R  N  G  R  S  L  W  I  *  R  S  F  P  F  N  D  G  E  I  R  R  G  R  I  H  E  G  A  L  Q  W  I  L  F  T  Y  G  C  E  Y  R  A  N  N  I  *  K  F  E  E  K  H  Y  E  S  W  F  K  *  F  K  R  *  *  V  D  L  H  V  G  *  R  R  F  G  W  *  W  S  T  *  S  N  G  I  L  Y  S  H  V  *  I  E  S  W  F  N  G  W  I  *  A  I  H  G  *  C  G  A  Y  S  F  P  T  L  T  R  F  F  I  N  S  L  I  C  V  F  Y  *  C  N  L  Y  *  Y  H  E  R  Y  D  D  D  D  D  E  D  L  M  P  N  K  *  F  S  M  Y  I  Y  L  C  V  L  I  *  R  S  D  D  Y  *  L  S  N  Y  N  I  R  H  F  Q  L  H  N  V  S  S  F  V  R  L  F  S  K  I  M  K  D  M  P  Y  *  W  G  I  D  E  R  V  C  Y  M  L  S  R  S  I  R  R  C  K  N  I  S  I  L  F  K  L  F  Y  F  G  M  D  D  *  F  G  A  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18511" stop="18861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SREMEDPYGFEDHFPSMMERLGAEGFMRELCNGFCLLMDVSIGLITYESLKRNTMNLGLNDLRDDELIYMLAEGDLDGDGALNQMEFCILMFRLSPGLMDGSKQYMDDVGLIHFQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24721" PGL_stop="21269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24721" e_stop="23844"/>
            <exon e_start="21523" e_stop="21276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="24721" e_stop="23844" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21523" e_stop="21276" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24721" stop="23976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24709" stop="23894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24698" stop="23846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24661" stop="23903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24660" stop="23844"/>
              <exon start="21523" stop="21481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24652" stop="24009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24640" stop="23897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24621" stop="23844"/>
              <exon start="21523" stop="21462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24046" stop="23844"/>
              <exon start="21523" stop="21276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATCAATTATTCCCCTTCTAGATTCTCTCATATTCCTCCTCCTCCTTCTTCTTCATCATCAAATAGAGCAATTCTCGCTGCCATAGCGATAAACAAGCATCAAATCAAACAAACAAAATCAATTCAAAAGAAAAAAAAGGTCAACTCCCCTAAGAATGCAGCAACAACCCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAGCGGAGGATCGGAATCGCCGTCGATCTAAGCGACGAGTCTGCTTTCGCCGTTAAGTGGGCTGTGAATCAGTACCTCCGTCCTGGTGACGCTGTTATCCTTGTTCACGTCCGTCCAACTTCCGTACTCTACGGTGCTGATTGGGGATCTGTTGAGCTATCTATTGTTGATACGGAGAATGAGGAGAGTCAGAGGAAGCTTGAGGATGATTTCGATACGTTTACTACTACTAAAGCGTCTGATTTAGCTCAGCCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG : ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTT</gDNA_template>
            <first_frame> L  I  N  Y  S  P  S  R  F  S  H  I  P  P  P  P  S  S  S  S  S  N  R  A  I  L  A  A  I  A  I  N  K  H  Q  I  K  Q  T  K  S  I  Q  K  K  K  K  V  N  S  P  K  N  A  A  T  T  P  I  P  H  P  R  F  R  S  P  P  S  S  *  H  Q  N  Q  I  I  F  S  T  F  S  P  T  H  H  P  F  H  H  *  Y  T  Y  R  R  S  S  A  E  D  R  N  R  R  R  S  K  R  R  V  C  F  R  R  *  V  G  C  E  S  V  P  P  S  W  *  R  C  Y  P  C  S  R  P  S  N  F  R  T  L  R  C  *  L  G  I  C  *  A  I  Y  C  *  Y  G  E  *  G  E  S  E  E  A  *  G  *  F  R  Y  V  Y  Y  Y  *  S  V  *  F  S  S  A  F  G  *  C  S  D  S  V  *  D  P  Y  C  *  G  S  *  Y  E  G  E  V  V  S  *  G  *  E  V  R  A  *  C  C  Y  Y  G  E  S  R  I  W  S  Y  E  E  G  E  *  W  K  T  W  E  C  *  *  L  L  C  *  A  L  C  V  S  C  C  G  C  *  V  S  R  *  *  G  C  W  K  C  C  C  R  A  R  G  F  C  C  F  S  C  *  R  R  R  G  G  S  *  V  P  *  C  F  *  G  S  K  R :   F  I  M  K  V  D  E  V  F  P  W  F  A  L  V  L  T  S  F  L  Q  E  P  V  G  P  L  *  H  L  E  S  F  Y  V  Y  E  L  L  *  L  V  S  R  N  I  N  L  L  W  F  L  L  D  D  C  I  Y  Y  G  Y  H  L  H  N  I  V  T  *  L  P  L  D  T  C  C  A  I  *  N  F  F  </first_frame>
            <second_frame>  *  S  I  I  P  L  L  D  S  L  I  F  L  L  L  L  L  L  H  H  Q  I  E  Q  F  S  L  P  *  R  *  T  S  I  K  S  N  K  Q  N  Q  F  K  R  K  K  R  S  T  P  L  R  M  Q  Q  Q  P  P  S  P  T  P  D  S  D  L  P  R  L  A  N  I  K  I  K  S  S  S  P  R  F  P  P  P  T  T  P  S  I  T  D  T  P  T  A  G  A  Q  R  R  I  G  I  A  V  D  L  S  D  E  S  A  F  A  V  K  W  A  V  N  Q  Y  L  R  P  G  D  A  V  I  L  V  H  V  R  P  T  S  V  L  Y  G  A  D  W  G  S  V  E  L  S  I  V  D  T  E  N  E  E  S  Q  R  K  L  E  D  D  F  D  T  F  T  T  T  K  A  S  D  L  A  Q  P  L  V  D  A  Q  I  P  F  K  I  H  I  V  K  D  H  D  M  R  E  R  L  C  L  E  V  E  R  L  G  L  S  A  V  I  M  G  S  R  G  F  G  A  T  K  R  G  S  D  G  R  L  G  S  V  S  D  Y  C  V  R  H  C  V  C  P  V  V  V  V  R  Y  P  D  D  K  D  A  G  N  A  V  V  E  P  V  V  S  V  A  S  A  A  E  E  D  E  E  E  A  E  Y  H  D  A  S  E  D  R  K   : D  S  *  *  R  W  T  R  S  S  L  G  L  H  L  Y  *  P  A  S  S  K  N  Q  *  A  L  C  D  I  W  S  H  F  M  Y  M  N  C  C  S  S  S  L  A  T  S  T  Y  Y  G  F  F  L  M  I  V  S  T  M  V  I  I  F  T  I  L  L  L  D  C  L  W  I  L  A  V  Q  S  K  T  F  F </second_frame>
            <third_frame>   N  Q  L  F  P  F  *  I  L  S  Y  S  S  S  S  F  F  F  I  I  K  *  S  N  S  R  C  H  S  D  K  Q  A  S  N  Q  T  N  K  I  N  S  K  E  K  K  G  Q  L  P  *  E  C  S  N  N  P  H  P  P  P  P  I  P  I  S  P  V  *  L  T  S  K  S  N  H  L  L  H  V  F  P  H  P  P  P  L  P  S  L  I  H  L  P  P  E  L  S  G  G  S  E  S  P  S  I  *  A  T  S  L  L  S  P  L  S  G  L  *  I  S  T  S  V  L  V  T  L  L  S  L  F  T  S  V  Q  L  P  Y  S  T  V  L  I  G  D  L  L  S  Y  L  L  L  I  R  R  M  R  R  V  R  G  S  L  R  M  I  S  I  R  L  L  L  L  K  R  L  I  *  L  S  L  W  L  M  L  R  F  R  L  R  S  I  L  L  R  I  M  I  *  G  R  G  C  V  L  R  L  R  G  *  G  L  V  L  L  L  W  G  V  E  D  L  E  L  R  R  G  G  V  M  E  D  L  G  V  L  V  I  I  V  L  G  T  V  C  V  L  L  W  L  L  G  I  P  M  I  R  M  L  E  M  L  L  *  S  P  W  F  L  L  L  Q  L  L  K  K  T  R  R  K  L  S  T  M  M  L  L  R  I  E  K  :  I  H  N  E  G  G  R  G  L  P  L  V  C  T  C  I  D  Q  L  P  P  R  T  S  R  P  F  V  T  S  G  V  I  L  C  I  *  T  V  V  A  R  L  S  Q  H  Q  L  I  M  V  S  S  *  *  L  Y  L  L  W  L  S  S  S  Q  Y  C  Y  L  I  A  F  G  Y  L  L  C  N  L  K  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24627" stop="23844"/>
                    <exon start="21523" stop="21516"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSIKSNKQNQFKRKKRSTPLRMQQQPPSPTPDSDLPRLANIKIKSSSPRFPPPTTPSITDTPTAGAQRRIGIAVDLSDESAFAVKWAVNQYLRPGDAVILVHVRPTSVLYGADWGSVELSIVDTENEESQRKLEDDFDTFTTTKASDLAQPLVDAQIPFKIHIVKDHDMRERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDDKDAGNAVVEPVVSVASAAEEDEEEAEYHDASEDRKDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24551" e_stop="24427"/>
            <exon e_start="24177" e_stop="23844"/>
            <exon e_start="21523" e_stop="21269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24551" e_stop="24427" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24426" i_stop="24178" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24177" e_stop="23844" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23843" i_stop="21524" i_length="2320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21523" e_stop="21269" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24427"/>
              <exon start="24177" stop="23844"/>
              <exon start="21523" stop="21269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24046" stop="23844"/>
              <exon start="21523" stop="21276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCATCCCCCACCCCCGATTCCGATCTCCCCCGTCTAGCTAACATCAAAATCAAATCATCTTCTCCACGTTTTCCCCCACCCACCACCCCTTCCATCACTGATACACCTACCGCCGGAGCTCAG : CCTTTGGTTGATGCTCAGATTCCGTTTAAGATCCATATTGTTAAGGATCATGATATGAGGGAGAGGTTGTGTCTTGAGGTTGAGAGGTTAGGGCTTAGTGCTGTTATTATGGGGAGTCGAGGATTTGGAGCTACGAAGAGGGGGAGTGATGGAAGACTTGGGAGTGTTAGTGATTATTGTGTTAGGCACTGTGTGTGTCCTGTTGTGGTTGTTAGGTATCCCGATGATAAGGATGCTGGAAATGCTGTTGTAGAGCCCGTGGTTTCTGTTGCTTCAGCTGCTGAAGAAGACGAGGAGGAAGCTGAGTACCATGATGCTTCTGAGGATCGAAAAG : ATTCATAATGAAGGTGGACGAGGTCTTCCCTTGGTTTGCACTTGTATTGACCAGCTTCCTCCAAGAACCAGTAGGCCCTTTGTGACATCTGGAGTCATTTTATGTATATGAACTGTTGTAGCTCGTCTCTCGCAACATCAACTTATTATGGTTTCTTCTTGATGATTGTATCTACTATGGTTATCATCTTCACAATATTGTTACTTGATTGCCTTTGGATACTTGCTGTGCAATCTAAAACTTTTTTTATGACTT</gDNA_template>
            <first_frame> P  H  P  P  P  P  I  P  I  S  P  V  *  L  T  S  K  S  N  H  L  L  H  V  F  P  H  P  P  P  L  P  S  L  I  H  L  P  P  E  L  S :   L  W  L  M  L  R  F  R  L  R  S  I  L  L  R  I  M  I  *  G  R  G  C  V  L  R  L  R  G  *  G  L  V  L  L  L  W  G  V  E  D  L  E  L  R  R  G  G  V  M  E  D  L  G  V  L  V  I  I  V  L  G  T  V  C  V  L  L  W  L  L  G  I  P  M  I  R  M  L  E  M  L  L  *  S  P  W  F  L  L  L  Q  L  L  K  K  T  R  R  K  L  S  T  M  M  L  L  R  I  E  K  :  I  H  N  E  G  G  R  G  L  P  L  V  C  T  C  I  D  Q  L  P  P  R  T  S  R  P  F  V  T  S  G  V  I  L  C  I  *  T  V  V  A  R  L  S  Q  H  Q  L  I  M  V  S  S  *  *  L  Y  L  L  W  L  S  S  S  Q  Y  C  Y  L  I  A  F  G  Y  L  L  C  N  L  K  L  F  L  *  L </first_frame>
            <second_frame>  P  I  P  H  P  R  F  R  S  P  P  S  S  *  H  Q  N  Q  I  I  F  S  T  F  S  P  T  H  H  P  F  H  H  *  Y  T  Y  R  R  S  S   : A  F  G  *  C  S  D  S  V  *  D  P  Y  C  *  G  S  *  Y  E  G  E  V  V  S  *  G  *  E  V  R  A  *  C  C  Y  Y  G  E  S  R  I  W  S  Y  E  E  G  E  *  W  K  T  W  E  C  *  *  L  L  C  *  A  L  C  V  S  C  C  G  C  *  V  S  R  *  *  G  C  W  K  C  C  C  R  A  R  G  F  C  C  F  S  C  *  R  R  R  G  G  S  *  V  P  *  C  F  *  G  S  K  R :   F  I  M  K  V  D  E  V  F  P  W  F  A  L  V  L  T  S  F  L  Q  E  P  V  G  P  L  *  H  L  E  S  F  Y  V  Y  E  L  L  *  L  V  S  R  N  I  N  L  L  W  F  L  L  D  D  C  I  Y  Y  G  Y  H  L  H  N  I  V  T  *  L  P  L  D  T  C  C  A  I  *  N  F  F  Y  D   </second_frame>
            <third_frame>   P  S  P  T  P  D  S  D  L  P  R  L  A  N  I  K  I  K  S  S  S  P  R  F  P  P  P  T  T  P  S  I  T  D  T  P  T  A  G  A  Q  :  P  L  V  D  A  Q  I  P  F  K  I  H  I  V  K  D  H  D  M  R  E  R  L  C  L  E  V  E  R  L  G  L  S  A  V  I  M  G  S  R  G  F  G  A  T  K  R  G  S  D  G  R  L  G  S  V  S  D  Y  C  V  R  H  C  V  C  P  V  V  V  V  R  Y  P  D  D  K  D  A  G  N  A  V  V  E  P  V  V  S  V  A  S  A  A  E  E  D  E  E  E  A  E  Y  H  D  A  S  E  D  R  K   : D  S  *  *  R  W  T  R  S  S  L  G  L  H  L  Y  *  P  A  S  S  K  N  Q  *  A  L  C  D  I  W  S  H  F  M  Y  M  N  C  C  S  S  S  L  A  T  S  T  Y  Y  G  F  F  L  M  I  V  S  T  M  V  I  I  F  T  I  L  L  L  D  C  L  W  I  L  A  V  Q  S  K  T  F  F  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24549" stop="24427"/>
                    <exon start="24177" stop="23844"/>
                    <exon start="21523" stop="21516"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPTPDSDLPRLANIKIKSSSPRFPPPTTPSITDTPTAGAQPLVDAQIPFKIHIVKDHDMRERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDDKDAGNAVVEPVVSVASAAEEDEEEAEYHDASEDRKDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23196" e_stop="22372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="23196" e_stop="22372" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23196" stop="22372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGACATCATACATAGGAATCCTGGGTGTATAAATTACCAGAAATGTGAAAAGGAATTATTTTGGGGTAGGCAGGTACTTAGTTCTGAGAGAATAACACAGGGTAAGCCTGTTTTAGAATAACAGTCATGTGAGTTAAATCCTAAAGCTAATTCTCTTCTAGTTTCCAAATGTCGTGTTGTAGTAAATTCGTGTTTAAGTTCAATTTAAGGTTGGACTTATGGGTTGAAAGGTCCAAAAATACAAAAATGGTTGGAATTATGAGTTATCTTGAATCAACCAATCCCTTACCCAAGACAAGATCTCGAATCAACCAATCGTCATATATTTCATTGGTTTGTTACCTAACCACGACTTTAGGTTTTCTCTAAGGGGATTACCATCTTTCAATGAGTGAACTGGTGGTAAATCTGATCCTAGTAATAAAAGAAGAAGAGAAAGGAAAAAAAGAAGAAGAGTGAAGTTGTGATAGATTAAATGCCAAGTCCAAAGCCGCCTTTTCAAATTTGTCACCTATCAAGCGACATGCATGCCCTAATTTGGCATTTCCAAGTGTGAGCAAAATCCAAGGTCATCTTTTTAATGATTTGGCTCTGCTCTAGTCTTCTAGATGCTGTTCTTTTATCATCCACATGCTTACCATGAAACTATTAACTTACCTTAAGATTAGTTGGGAAAGAAAAAGTGTACATAAAGAGTGTTTTGGTTCTGGGTGATGAAAAGATAGACAACCCTATAGTGTATATGCTTGTTAAGCCAGAAAGATCTCCTTTAAGCATGGAAAGTGGTGTAGACATTTGAGGCTATTATTATCTTATTATCCA</gDNA_template>
            <first_frame> Y  *  H  H  T  *  E  S  W  V  Y  K  L  P  E  M  *  K  G  I  I  L  G  *  A  G  T  *  F  *  E  N  N  T  G  *  A  C  F  R  I  T  V  M  *  V  K  S  *  S  *  F  S  S  S  F  Q  M  S  C  C  S  K  F  V  F  K  F  N  L  R  L  D  L  W  V  E  R  S  K  N  T  K  M  V  G  I  M  S  Y  L  E  S  T  N  P  L  P  K  T  R  S  R  I  N  Q  S  S  Y  I  S  L  V  C  Y  L  T  T  T  L  G  F  L  *  G  D  Y  H  L  S  M  S  E  L  V  V  N  L  I  L  V  I  K  E  E  E  K  G  K  K  E  E  E  *  S  C  D  R  L  N  A  K  S  K  A  A  F  S  N  L  S  P  I  K  R  H  A  C  P  N  L  A  F  P  S  V  S  K  I  Q  G  H  L  F  N  D  L  A  L  L  *  S  S  R  C  C  S  F  I  I  H  M  L  T  M  K  L  L  T  Y  L  K  I  S  W  E  R  K  S  V  H  K  E  C  F  G  S  G  *  *  K  D  R  Q  P  Y  S  V  Y  A  C  *  A  R  K  I  S  F  K  H  G  K  W  C  R  H  L  R  L  L  L  S  Y  Y  P </first_frame>
            <second_frame>  I  D  I  I  H  R  N  P  G  C  I  N  Y  Q  K  C  E  K  E  L  F  W  G  R  Q  V  L  S  S  E  R  I  T  Q  G  K  P  V  L  E  *  Q  S  C  E  L  N  P  K  A  N  S  L  L  V  S  K  C  R  V  V  V  N  S  C  L  S  S  I  *  G  W  T  Y  G  L  K  G  P  K  I  Q  K  W  L  E  L  *  V  I  L  N  Q  P  I  P  Y  P  R  Q  D  L  E  S  T  N  R  H  I  F  H  W  F  V  T  *  P  R  L  *  V  F  S  K  G  I  T  I  F  Q  *  V  N  W  W  *  I  *  S  *  *  *  K  K  K  R  K  E  K  K  K  K  S  E  V  V  I  D  *  M  P  S  P  K  P  P  F  Q  I  C  H  L  S  S  D  M  H  A  L  I  W  H  F  Q  V  *  A  K  S  K  V  I  F  L  M  I  W  L  C  S  S  L  L  D  A  V  L  L  S  S  T  C  L  P  *  N  Y  *  L  T  L  R  L  V  G  K  E  K  V  Y  I  K  S  V  L  V  L  G  D  E  K  I  D  N  P  I  V  Y  M  L  V  K  P  E  R  S  P  L  S  M  E  S  G  V  D  I  *  G  Y  Y  Y  L  I  I   </second_frame>
            <third_frame>   L  T  S  Y  I  G  I  L  G  V  *  I  T  R  N  V  K  R  N  Y  F  G  V  G  R  Y  L  V  L  R  E  *  H  R  V  S  L  F  *  N  N  S  H  V  S  *  I  L  K  L  I  L  F  *  F  P  N  V  V  L  *  *  I  R  V  *  V  Q  F  K  V  G  L  M  G  *  K  V  Q  K  Y  K  N  G  W  N  Y  E  L  S  *  I  N  Q  S  L  T  Q  D  K  I  S  N  Q  P  I  V  I  Y  F  I  G  L  L  P  N  H  D  F  R  F  S  L  R  G  L  P  S  F  N  E  *  T  G  G  K  S  D  P  S  N  K  R  R  R  E  R  K  K  R  R  R  V  K  L  *  *  I  K  C  Q  V  Q  S  R  L  F  K  F  V  T  Y  Q  A  T  C  M  P  *  F  G  I  S  K  C  E  Q  N  P  R  S  S  F  *  *  F  G  S  A  L  V  F  *  M  L  F  F  Y  H  P  H  A  Y  H  E  T  I  N  L  P  *  D  *  L  G  K  K  K  C  T  *  R  V  F  W  F  W  V  M  K  R  *  T  T  L  *  C  I  C  L  L  S  Q  K  D  L  L  *  A  W  K  V  V  *  T  F  E  A  I  I  I  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23043" stop="22825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSSFQMSCCSKFVFKFNLRLDLWVERSKNTKMVGIMSYLESTNPLPKTRSRINQSSYISLVCYLTTTLGFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27811" PGL_stop="27218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27811" e_stop="27218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="27811" e_stop="27218" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27811" stop="27218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACACCTTTCTTACTGCCTCTTCCCCACCCCACCAACTCACAAAATTTCAACTACTGTTCCATTGAAAATGGCTACTTCTCTTCAGTTTTCTTCAGATCATCACCCTATTCCTCAGGAAAATCATCAAACAACGAACCAGACCTCAACGGGAGGACGTAGAAGGTCGAGTAAAAATGGACAGAAGAAGAAGAAGCAACCACAAAGAGGAATGGGAGTTGAACAACTCGAACGTCTTCGAGTACAAGATCAGATGAAAAACAGTACTATCCATGGCGTTCATCATAATCATCAGTACTACTCTAATAACAATTTCCCTAAATTAACTCCTGTTTCATCATTTACCGGCGGTGGTAGTGCTAGTGCTGATCCTGGAAATTATAGTAATTCTATTTTGAACTCTTCACCAGTACTTCAGTTCCCCAAATTGTGTGCAGTGAGCCCTAATGATTTTTTTATGCAACAAAAAGTTGTGAATACTGGGTTTATTGGATCTAGTAGTACAAATCAGTTGATGATTTCTTCTCATGATCATCATCAGTTTCAATCTCAGATGAATCTCTACGGATTTGCAACTTCTAAGCCCAGTACTG</gDNA_template>
            <first_frame> K  N  T  F  L  T  A  S  S  P  P  H  Q  L  T  K  F  Q  L  L  F  H  *  K  W  L  L  L  F  S  F  L  Q  I  I  T  L  F  L  R  K  I  I  K  Q  R  T  R  P  Q  R  E  D  V  E  G  R  V  K  M  D  R  R  R  R  S  N  H  K  E  E  W  E  L  N  N  S  N  V  F  E  Y  K  I  R  *  K  T  V  L  S  M  A  F  I  I  I  I  S  T  T  L  I  T  I  S  L  N  *  L  L  F  H  H  L  P  A  V  V  V  L  V  L  I  L  E  I  I  V  I  L  F  *  T  L  H  Q  Y  F  S  S  P  N  C  V  Q  *  A  L  M  I  F  L  C  N  K  K  L  *  I  L  G  L  L  D  L  V  V  Q  I  S  *  *  F  L  L  M  I  I  I  S  F  N  L  R  *  I  S  T  D  L  Q  L  L  S  P  V  L </first_frame>
            <second_frame>  K  T  P  F  L  L  P  L  P  H  P  T  N  S  Q  N  F  N  Y  C  S  I  E  N  G  Y  F  S  S  V  F  F  R  S  S  P  Y  S  S  G  K  S  S  N  N  E  P  D  L  N  G  R  T  *  K  V  E  *  K  W  T  E  E  E  E  A  T  T  K  R  N  G  S  *  T  T  R  T  S  S  S  T  R  S  D  E  K  Q  Y  Y  P  W  R  S  S  *  S  S  V  L  L  *  *  Q  F  P  *  I  N  S  C  F  I  I  Y  R  R  W  *  C  *  C  *  S  W  K  L  *  *  F  Y  F  E  L  F  T  S  T  S  V  P  Q  I  V  C  S  E  P  *  *  F  F  Y  A  T  K  S  C  E  Y  W  V  Y  W  I  *  *  Y  K  S  V  D  D  F  F  S  *  S  S  S  V  S  I  S  D  E  S  L  R  I  C  N  F  *  A  Q  Y   </second_frame>
            <third_frame>   K  H  L  S  Y  C  L  F  P  T  P  P  T  H  K  I  S  T  T  V  P  L  K  M  A  T  S  L  Q  F  S  S  D  H  H  P  I  P  Q  E  N  H  Q  T  T  N  Q  T  S  T  G  G  R  R  R  S  S  K  N  G  Q  K  K  K  K  Q  P  Q  R  G  M  G  V  E  Q  L  E  R  L  R  V  Q  D  Q  M  K  N  S  T  I  H  G  V  H  H  N  H  Q  Y  Y  S  N  N  N  F  P  K  L  T  P  V  S  S  F  T  G  G  G  S  A  S  A  D  P  G  N  Y  S  N  S  I  L  N  S  S  P  V  L  Q  F  P  K  L  C  A  V  S  P  N  D  F  F  M  Q  Q  K  V  V  N  T  G  F  I  G  S  S  S  T  N  Q  L  M  I  S  S  H  D  H  H  Q  F  Q  S  Q  M  N  L  Y  G  F  A  T  S  K  P  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27809" stop="27219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLSYCLFPTPPTHKISTTVPLKMATSLQFSSDHHPIPQENHQTTNQTSTGGRRRSSKNGQKKKKQPQRGMGVEQLERLRVQDQMKNSTIHGVHHNHQYYSNNNFPKLTPVSSFTGGGSASADPGNYSNSILNSSPVLQFPKLCAVSPNDFFMQQKVVNTGFIGSSSTNQLMISSHDHHQFQSQMNLYGFATSKPST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="35884" PGL_stop="34771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35884" e_stop="35485"/>
            <exon e_start="35037" e_stop="34771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="1.000" e_score="0.962"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="35884" e_stop="35485" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35484" i_stop="35038" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="35037" e_stop="34771" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35884" stop="35485"/>
              <exon start="35037" stop="34917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35884" stop="35485"/>
              <exon start="35037" stop="34946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35882" stop="35485"/>
              <exon start="35037" stop="34905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35827" stop="35485"/>
              <exon start="35037" stop="34924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35822" stop="35485"/>
              <exon start="35037" stop="34771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35819" stop="35485"/>
              <exon start="35037" stop="34866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35819" stop="35485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATCCTAAATTCGCGATATTTTTAGTCCAAAGACATTTTTGTCTTTCTATCCCCCCTATCTCCTTCCTCCCTGCAAATGCCTATTTAGTTCTGTAAATATTTTACACATTGGGCATGGGCAAATGGCAAAATTAGCGAAAAATCGAGGAAGGAATAGATTTTTTAATAGTTGTTATAAGCCTCTACATTTCAACGATGATATATCTAATACAAATAAACGAGGTCATTTGTATAATTCAACAGATATATCTAATTTGAAGAGAGTAAAATCACAAGAAAAATTGGATTCAATGTTGGGAAAAGATTTGACCAAAAATTTTCGACCAAATCGAAAGGAGAATGCCTTTGGAAGGAATTTTTCTCATGCACTCAAAAATGTGTTTTTTGATACATCATTG : GGGAAGAAAGGCCAGAGGAAAGAGCATAAGTATTCATTTGGATCATGTAAAAAGTTATCAACAAAATTTGAGAAAATATTTCATTCTACAAAAGAAAAAAAGTTTTCTTCATCAAAGGATTTACCAAAAATTACAAGTAGAATGTCCACAAGTGCAAGCATGGATGATTTTTCCTTATTCACTACTTCTACATCCTCTTTATTTTCTTCTTCTTCTTCTTCTCGTTCGTCTTGTTCATCACAGAGAACGCAATTTTCATCTTTTCAC</gDNA_template>
            <first_frame> F  I  L  N  S  R  Y  F  *  S  K  D  I  F  V  F  L  S  P  L  S  P  S  S  L  Q  M  P  I  *  F  C  K  Y  F  T  H  W  A  W  A  N  G  K  I  S  E  K  S  R  K  E  *  I  F  *  *  L  L  *  A  S  T  F  Q  R  *  Y  I  *  Y  K  *  T  R  S  F  V  *  F  N  R  Y  I  *  F  E  E  S  K  I  T  R  K  I  G  F  N  V  G  K  R  F  D  Q  K  F  S  T  K  S  K  G  E  C  L  W  K  E  F  F  S  C  T  Q  K  C  V  F  *  Y  I  I   : G  E  E  R  P  E  E  R  A  *  V  F  I  W  I  M  *  K  V  I  N  K  I  *  E  N  I  S  F  Y  K  R  K  K  V  F  F  I  K  G  F  T  K  N  Y  K  *  N  V  H  K  C  K  H  G  *  F  F  L  I  H  Y  F  Y  I  L  F  I  F  F  F  F  F  F  S  F  V  L  F  I  T  E  N  A  I  F  I  F  S  </first_frame>
            <second_frame>  L  S  *  I  R  D  I  F  S  P  K  T  F  L  S  F  Y  P  P  Y  L  L  P  P  C  K  C  L  F  S  S  V  N  I  L  H  I  G  H  G  Q  M  A  K  L  A  K  N  R  G  R  N  R  F  F  N  S  C  Y  K  P  L  H  F  N  D  D  I  S  N  T  N  K  R  G  H  L  Y  N  S  T  D  I  S  N  L  K  R  V  K  S  Q  E  K  L  D  S  M  L  G  K  D  L  T  K  N  F  R  P  N  R  K  E  N  A  F  G  R  N  F  S  H  A  L  K  N  V  F  F  D  T  S  L  :  G  K  K  G  Q  R  K  E  H  K  Y  S  F  G  S  C  K  K  L  S  T  K  F  E  K  I  F  H  S  T  K  E  K  K  F  S  S  S  K  D  L  P  K  I  T  S  R  M  S  T  S  A  S  M  D  D  F  S  L  F  T  T  S  T  S  S  L  F  S  S  S  S  S  S  R  S  S  C  S  S  Q  R  T  Q  F  S  S  F  H </second_frame>
            <third_frame>   Y  P  K  F  A  I  F  L  V  Q  R  H  F  C  L  S  I  P  P  I  S  F  L  P  A  N  A  Y  L  V  L  *  I  F  Y  T  L  G  M  G  K  W  Q  N  *  R  K  I  E  E  G  I  D  F  L  I  V  V  I  S  L  Y  I  S  T  M  I  Y  L  I  Q  I  N  E  V  I  C  I  I  Q  Q  I  Y  L  I  *  R  E  *  N  H  K  K  N  W  I  Q  C  W  E  K  I  *  P  K  I  F  D  Q  I  E  R  R  M  P  L  E  G  I  F  L  M  H  S  K  M  C  F  L  I  H  H  W :   G  R  K  A  R  G  K  S  I  S  I  H  L  D  H  V  K  S  Y  Q  Q  N  L  R  K  Y  F  I  L  Q  K  K  K  S  F  L  H  Q  R  I  Y  Q  K  L  Q  V  E  C  P  Q  V  Q  A  W  M  I  F  P  Y  S  L  L  L  H  P  L  Y  F  L  L  L  L  L  L  V  R  L  V  H  H  R  E  R  N  F  H  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35874" stop="35485"/>
                    <exon start="35037" stop="34771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDIFSPKTFLSFYPPYLLPPCKCLFSSVNILHIGHGQMAKLAKNRGRNRFFNSCYKPLHFNDDISNTNKRGHLYNSTDISNLKRVKSQEKLDSMLGKDLTKNFRPNRKENAFGRNFSHALKNVFFDTSLGKKGQRKEHKYSFGSCKKLSTKFEKIFHSTKEKKFSSSKDLPKITSRMSTSASMDDFSLFTTSTSSLFSSSSSSRSSCSSQRTQFSSFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37268" PGL_stop="39000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37268" e_stop="37501"/>
            <exon e_start="38389" e_stop="38560"/>
            <exon e_start="38751" e_stop="38863"/>
            <exon e_start="38958" e_stop="39000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37268" e_stop="37501" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37502" i_stop="38388" i_length="887"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38389" e_stop="38560" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.952">
            <gDNA_intron_boundary i_start="38561" i_stop="38750" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38751" e_stop="38863" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38864" i_stop="38957" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38958" e_stop="39000" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37268" stop="37501"/>
              <exon start="38389" stop="38560"/>
              <exon start="38751" stop="38863"/>
              <exon start="38958" stop="39000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37275" stop="37501"/>
              <exon start="38389" stop="38560"/>
              <exon start="38751" stop="38831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37279" stop="37501"/>
              <exon start="38389" stop="38560"/>
              <exon start="38751" stop="38863"/>
              <exon start="38958" stop="38986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37288" stop="37501"/>
              <exon start="38389" stop="38560"/>
              <exon start="38751" stop="38824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGGGAGAAAGGCGGTTGCTGAATATTTGAGCAAAGAATCCATACGAATATATATACACTATTTTTTCCTCTTCTTCTTGTAGCTCTCGGCGATTGTAATTGAAGAATCCATTTGCGAAGAAAACGAAGAACCCTATGGAGCTTCTCCGATCAAACCTTGCTCGTGTTCGGATTCCAGAGCCGACTACTCGTATCTACAAGCACGAGTGCTGCATTTCTTTCGATACTCCG : AAATCCGATGGCGGGCTGTTTGTTGATATGAGTACTTTTCTTGCATTTGGAAGGGATTGTGTTGATTGGAACTATGAGAAGACTGGGAACCCAGTTTATTTGCATATAAAGCAGACAAAGAAGGCAGATGCTGAAGATAGACCGTCCAAAAAACCCACTCTCTTGGCTATAG : GTTTAGACGGAGGGTTTGATAACAGTGAACCCCAGTACGAAGAATTCTATGAAATAGTTATATTGCCTGATAATGTCACTCTTCCTTTCCCATCGGTGGAATTGCCTGAGAAG : GTTAGATTGGCTGTTGATGCTATTTTACTAGCTGAAGGTGCTG</gDNA_template>
            <first_frame> N  *  G  E  R  R  L  L  N  I  *  A  K  N  P  Y  E  Y  I  Y  T  I  F  S  S  S  S  C  S  S  R  R  L  *  L  K  N  P  F  A  K  K  T  K  N  P  M  E  L  L  R  S  N  L  A  R  V  R  I  P  E  P  T  T  R  I  Y  K  H  E  C  C  I  S  F  D  T  P  :  K  S  D  G  G  L  F  V  D  M  S  T  F  L  A  F  G  R  D  C  V  D  W  N  Y  E  K  T  G  N  P  V  Y  L  H  I  K  Q  T  K  K  A  D  A  E  D  R  P  S  K  K  P  T  L  L  A  I   : G  L  D  G  G  F  D  N  S  E  P  Q  Y  E  E  F  Y  E  I  V  I  L  P  D  N  V  T  L  P  F  P  S  V  E  L  P  E  K  :  V  R  L  A  V  D  A  I  L  L  A  E  G  A  </first_frame>
            <second_frame>  I  R  E  K  G  G  C  *  I  F  E  Q  R  I  H  T  N  I  Y  T  L  F  F  P  L  L  L  V  A  L  G  D  C  N  *  R  I  H  L  R  R  K  R  R  T  L  W  S  F  S  D  Q  T  L  L  V  F  G  F  Q  S  R  L  L  V  S  T  S  T  S  A  A  F  L  S  I  L  R :   N  P  M  A  G  C  L  L  I  *  V  L  F  L  H  L  E  G  I  V  L  I  G  T  M  R  R  L  G  T  Q  F  I  C  I  *  S  R  Q  R  R  Q  M  L  K  I  D  R  P  K  N  P  L  S  W  L  *  :  V  *  T  E  G  L  I  T  V  N  P  S  T  K  N  S  M  K  *  L  Y  C  L  I  M  S  L  F  L  S  H  R  W  N  C  L  R  R :   L  D  W  L  L  M  L  F  Y  *  L  K  V  L </second_frame>
            <third_frame>   L  G  R  K  A  V  A  E  Y  L  S  K  E  S  I  R  I  Y  I  H  Y  F  F  L  F  F  L  *  L  S  A  I  V  I  E  E  S  I  C  E  E  N  E  E  P  Y  G  A  S  P  I  K  P  C  S  C  S  D  S  R  A  D  Y  S  Y  L  Q  A  R  V  L  H  F  F  R  Y  S   : E  I  R  W  R  A  V  C  *  Y  E  Y  F  S  C  I  W  K  G  L  C  *  L  E  L  *  E  D  W  E  P  S  L  F  A  Y  K  A  D  K  E  G  R  C  *  R  *  T  V  Q  K  T  H  S  L  G  Y  R :   F  R  R  R  V  *  *  Q  *  T  P  V  R  R  I  L  *  N  S  Y  I  A  *  *  C  H  S  S  F  P  I  G  G  I  A  *  E   : G  *  I  G  C  *  C  Y  F  T  S  *  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37370" stop="37501"/>
                    <exon start="38389" stop="38560"/>
                    <exon start="38751" stop="38863"/>
                    <exon start="38958" stop="38999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNPFAKKTKNPMELLRSNLARVRIPEPTTRIYKHECCISFDTPKSDGGLFVDMSTFLAFGRDCVDWNYEKTGNPVYLHIKQTKKADAEDRPSKKPTLLAIGLDGGFDNSEPQYEEFYEIVILPDNVTLPFPSVELPEKVRLAVDAILLAEGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40858" PGL_stop="42168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40858" e_stop="40993"/>
            <exon e_start="41101" e_stop="41157"/>
            <exon e_start="41273" e_stop="41350"/>
            <exon e_start="41994" e_stop="42048"/>
            <exon e_start="42136" e_stop="42168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.864" e_score="0.945"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40858" e_stop="40993" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.936">
            <gDNA_intron_boundary i_start="40994" i_stop="41100" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41101" e_stop="41157" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41158" i_stop="41272" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="41273" e_stop="41350" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41351" i_stop="41993" i_length="643"/>
          </intron>
          <exon e_serial="4" e_score="0.945">
            <gDNA_exon_boundary e_start="41994" e_stop="42048" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.864">
            <gDNA_intron_boundary i_start="42049" i_stop="42135" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42136" e_stop="42168" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40858" stop="40993"/>
              <exon start="41101" stop="41157"/>
              <exon start="41273" stop="41350"/>
              <exon start="41994" stop="42048"/>
              <exon start="42136" stop="42147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40917" stop="40993"/>
              <exon start="41101" stop="41157"/>
              <exon start="41273" stop="41350"/>
              <exon start="41994" stop="42048"/>
              <exon start="42136" stop="42168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTGAAATGACGACTGCTGAGAGAGAACTAGACCAAAATTTTAACTTTGATTGGAACCGGATTCAAGAGACTGGTGAGGACGTTGAACCACTTTTTGGACCTGGTTACACTGGATTAGTCAATCTTGGTAACAG : TTGCTACTTGGCTGCTACAATGCAGGTTATGTTCTCAACGCGTTCATTTTGTTCAAG : ATACTACTTTGATCAACGTCTGAAAGAAGCTTTTACTACGGCTCCTGCTGATCCGACTGTAGACCTTAACATGCAGCT : AACAAAGCTGGCTCATGGTTTGCTTTCTGGTAAATATTCGGGTCCTGTTCTGGAG : AAGGATAATACTGCTAATGCTGTAAGCTCACAG</gDNA_template>
            <first_frame> R  L  K  *  R  L  L  R  E  N  *  T  K  I  L  T  L  I  G  T  G  F  K  R  L  V  R  T  L  N  H  F  L  D  L  V  T  L  D  *  S  I  L  V  T   : V  A  T  W  L  L  Q  C  R  L  C  S  Q  R  V  H  F  V  Q   : D  T  T  L  I  N  V  *  K  K  L  L  L  R  L  L  L  I  R  L  *  T  L  T  C  S   : *  Q  S  W  L  M  V  C  F  L  V  N  I  R  V  L  F  W  R :   R  I  I  L  L  M  L  *  A  H   </first_frame>
            <second_frame>  D  *  N  D  D  C  *  E  R  T  R  P  K  F  *  L  *  L  E  P  D  S  R  D  W  *  G  R  *  T  T  F  W  T  W  L  H  W  I  S  Q  S  W  *  Q  :  L  L  L  G  C  Y  N  A  G  Y  V  L  N  A  F  I  L  F  K  :  I  L  L  *  S  T  S  E  R  S  F  Y  Y  G  S  C  *  S  D  C  R  P  *  H  A  A  :  N  K  A  G  S  W  F  A  F  W  *  I  F  G  S  C  S  G   : E  G  *  Y  C  *  C  C  K  L  T  </second_frame>
            <third_frame>   T  E  M  T  T  A  E  R  E  L  D  Q  N  F  N  F  D  W  N  R  I  Q  E  T  G  E  D  V  E  P  L  F  G  P  G  Y  T  G  L  V  N  L  G  N  S :   C  Y  L  A  A  T  M  Q  V  M  F  S  T  R  S  F  C  S  R :   Y  Y  F  D  Q  R  L  K  E  A  F  T  T  A  P  A  D  P  T  V  D  L  N  M  Q  L :   T  K  L  A  H  G  L  L  S  G  K  Y  S  G  P  V  L  E  :  K  D  N  T  A  N  A  V  S  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40860" stop="40993"/>
                    <exon start="41101" stop="41157"/>
                    <exon start="41273" stop="41350"/>
                    <exon start="41994" stop="42048"/>
                    <exon start="42136" stop="42168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEMTTAERELDQNFNFDWNRIQETGEDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTRSFCSRYYFDQRLKEAFTTAPADPTVDLNMQLTKLAHGLLSGKYSGPVLEKDNTANAVSSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42526" PGL_stop="47025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42526" e_stop="42561"/>
            <exon e_start="42965" e_stop="43163"/>
            <exon e_start="43300" e_stop="43357"/>
            <exon e_start="43426" e_stop="43548"/>
            <exon e_start="43833" e_stop="43921"/>
            <exon e_start="44009" e_stop="44098"/>
            <exon e_start="45198" e_stop="45368"/>
            <exon e_start="45459" e_stop="45577"/>
            <exon e_start="45686" e_stop="45812"/>
            <exon e_start="46864" e_stop="47025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.946" e_score="0.989"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.480" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42526" e_stop="42561" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.820">
            <gDNA_intron_boundary i_start="42562" i_stop="42964" i_length="403"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42965" e_stop="43163" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43164" i_stop="43299" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43300" e_stop="43357" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43358" i_stop="43425" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43426" e_stop="43548" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.738">
            <gDNA_intron_boundary i_start="43549" i_stop="43832" i_length="284"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="43833" e_stop="43921" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.946">
            <gDNA_intron_boundary i_start="43922" i_stop="44008" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44009" e_stop="44098" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44099" i_stop="45197" i_length="1099"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45198" e_stop="45368" e_length="171"/>
          </exon>
          <intron i_serial="7" don_prob="0.480" acc_prob="0.850">
            <gDNA_intron_boundary i_start="45369" i_stop="45458" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45459" e_stop="45577" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45578" i_stop="45685" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45686" e_stop="45812" e_length="127"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="45813" i_stop="46863" i_length="1051"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46864" e_stop="47025" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42526" stop="42561"/>
              <exon start="42965" stop="43163"/>
              <exon start="43300" stop="43357"/>
              <exon start="43426" stop="43548"/>
              <exon start="43833" stop="43887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42530" stop="42561"/>
              <exon start="42965" stop="43163"/>
              <exon start="43300" stop="43357"/>
              <exon start="43426" stop="43548"/>
              <exon start="43833" stop="43853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43015" stop="43163"/>
              <exon start="43300" stop="43357"/>
              <exon start="43426" stop="43548"/>
              <exon start="43833" stop="43921"/>
              <exon start="44009" stop="44098"/>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44046" stop="44098"/>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45812"/>
              <exon start="46864" stop="47025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45198" stop="45368"/>
              <exon start="45459" stop="45577"/>
              <exon start="45686" stop="45694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAGTCACCCTGAATTTTCAACAATGAGACAACAG : GATGCGTTAGAGTTCTTCCTGCATTTTATTGATCAAGTTGAACGGATAAACTCTGGGACACCTAATTTTGATCCATCAAGGAGCTTCAAGTTTGGTATTGAAGAACGCCTCCAATGTTCCTCGGGCAAAGTCACTTACAACAGAAGGAATGATTATATTCTGTCTCTTAATATTCCTTTGGAGAGGGCTATAAATAAAA : AAGAGCTAGCAGAATTTCAAAATTTGAAGGCTGAGAGAGCTGCAGGAGGAAAAGAACT : GTCTGCTGATGAAATTGTTCGCCCTAGAGTATCATTGAAGGATTGCCTAGATTGCTTTTCAGCTCCTGAGGAGGTGCATGATTTCTACAGCACAGCTTTAACAGCTAGGACTACAGCAATCAA : AACTGCAGGTTTGACTTCTTTTCCAGATTATCTGGTTTTGCACATGCGGAAATTTGTTATGGAGGAAGGTTGGGTGCCAAAGAAGCTCG : ATGTCTACATAGATGTCCCTGAAACCATTGACATAAGTAGCATGCGAAGTAATGGTATTCAACCAGGAGAAGAGCTGTTGCCTGACAGTG : CTGCAGGGGATGGTGAGCAGTCAATAAAGCTTCTGGCTGACGATGATATTGTTGCACAACTTGTTTCAATGGGATTTAATCTACTTCATTGTCAGAAGGCTGCTATCAATACTTCCAACAGTGGAGTAGAGGCAGCAATGGATTGGTTACTTAATCATATGAATGATCCAG : ATATTGATGCTCCTATATCAGAAAACGTGCAAAATCCTGATATTGATCAATCTAAAGTTGATACGCTGGTTTCATTTGGTTTCGAAGAGAAACTTGCCCATAAGGCCCTGAAGGCATCG : GGAGGTGATGTTGAAAAAGCTACTGAATGGATATTCAGCAGCCCTAGTGCCAGTACTGCAGCAGACATGGATGTTACTACCAGTAGTGGAGCTGCAGTTGATACCTTGATGCCTGATGGAGGAGGAA : AATACAGGCTCCTGGGATTCGTGAGCCACATAGGCACATCTACCCACTGTGGCCATTATGTCGCTCATATTAACAAAGATGGCCGGTGGGTGATTTTCAACGATGAAAAAGTTGGGGTCTCAAAAAACCCCCCTATGGATATGGGATACCTCTACTTTTTTG</gDNA_template>
            <first_frame> A  S  H  P  E  F  S  T  M  R  Q  Q  :  D  A  L  E  F  F  L  H  F  I  D  Q  V  E  R  I  N  S  G  T  P  N  F  D  P  S  R  S  F  K  F  G  I  E  E  R  L  Q  C  S  S  G  K  V  T  Y  N  R  R  N  D  Y  I  L  S  L  N  I  P  L  E  R  A  I  N  K   : K  E  L  A  E  F  Q  N  L  K  A  E  R  A  A  G  G  K  E  L :   S  A  D  E  I  V  R  P  R  V  S  L  K  D  C  L  D  C  F  S  A  P  E  E  V  H  D  F  Y  S  T  A  L  T  A  R  T  T  A  I  K :   T  A  G  L  T  S  F  P  D  Y  L  V  L  H  M  R  K  F  V  M  E  E  G  W  V  P  K  K  L   : D  V  Y  I  D  V  P  E  T  I  D  I  S  S  M  R  S  N  G  I  Q  P  G  E  E  L  L  P  D  S   : A  A  G  D  G  E  Q  S  I  K  L  L  A  D  D  D  I  V  A  Q  L  V  S  M  G  F  N  L  L  H  C  Q  K  A  A  I  N  T  S  N  S  G  V  E  A  A  M  D  W  L  L  N  H  M  N  D  P   : D  I  D  A  P  I  S  E  N  V  Q  N  P  D  I  D  Q  S  K  V  D  T  L  V  S  F  G  F  E  E  K  L  A  H  K  A  L  K  A  S  :  G  G  D  V  E  K  A  T  E  W  I  F  S  S  P  S  A  S  T  A  A  D  M  D  V  T  T  S  S  G  A  A  V  D  T  L  M  P  D  G  G  G   : K  Y  R  L  L  G  F  V  S  H  I  G  T  S  T  H  C  G  H  Y  V  A  H  I  N  K  D  G  R  W  V  I  F  N  D  E  K  V  G  V  S  K  N  P  P  M  D  M  G  Y  L  Y  F  F  </first_frame>
            <second_frame>  L  V  T  L  N  F  Q  Q  *  D  N  R :   M  R  *  S  S  S  C  I  L  L  I  K  L  N  G  *  T  L  G  H  L  I  L  I  H  Q  G  A  S  S  L  V  L  K  N  A  S  N  V  P  R  A  K  S  L  T  T  E  G  M  I  I  F  C  L  L  I  F  L  W  R  G  L  *  I  K  :  K  S  *  Q  N  F  K  I  *  R  L  R  E  L  Q  E  E  K  N   : C  L  L  M  K  L  F  A  L  E  Y  H  *  R  I  A  *  I  A  F  Q  L  L  R  R  C  M  I  S  T  A  Q  L  *  Q  L  G  L  Q  Q  S   : K  L  Q  V  *  L  L  F  Q  I  I  W  F  C  T  C  G  N  L  L  W  R  K  V  G  C  Q  R  S  S  :  M  S  T  *  M  S  L  K  P  L  T  *  V  A  C  E  V  M  V  F  N  Q  E  K  S  C  C  L  T  V  :  L  Q  G  M  V  S  S  Q  *  S  F  W  L  T  M  I  L  L  H  N  L  F  Q  W  D  L  I  Y  F  I  V  R  R  L  L  S  I  L  P  T  V  E  *  R  Q  Q  W  I  G  Y  L  I  I  *  M  I  Q  :  I  L  M  L  L  Y  Q  K  T  C  K  I  L  I  L  I  N  L  K  L  I  R  W  F  H  L  V  S  K  R  N  L  P  I  R  P  *  R  H  R :   E  V  M  L  K  K  L  L  N  G  Y  S  A  A  L  V  P  V  L  Q  Q  T  W  M  L  L  P  V  V  E  L  Q  L  I  P  *  C  L  M  E  E  E  :  N  T  G  S  W  D  S  *  A  T  *  A  H  L  P  T  V  A  I  M  S  L  I  L  T  K  M  A  G  G  *  F  S  T  M  K  K  L  G  S  Q  K  T  P  L  W  I  W  D  T  S  T  F  L </second_frame>
            <third_frame>   *  S  P  *  I  F  N  N  E  T  T   : G  C  V  R  V  L  P  A  F  Y  *  S  S  *  T  D  K  L  W  D  T  *  F  *  S  I  K  E  L  Q  V  W  Y  *  R  T  P  P  M  F  L  G  Q  S  H  L  Q  Q  K  E  *  L  Y  S  V  S  *  Y  S  F  G  E  G  Y  K  *  K :   R  A  S  R  I  S  K  F  E  G  *  E  S  C  R  R  K  R  T  :  V  C  *  *  N  C  S  P  *  S  I  I  E  G  L  P  R  L  L  F  S  S  *  G  G  A  *  F  L  Q  H  S  F  N  S  *  D  Y  S  N  Q  :  N  C  R  F  D  F  F  S  R  L  S  G  F  A  H  A  E  I  C  Y  G  G  R  L  G  A  K  E  A  R :   C  L  H  R  C  P  *  N  H  *  H  K  *  H  A  K  *  W  Y  S  T  R  R  R  A  V  A  *  Q  C :   C  R  G  W  *  A  V  N  K  A  S  G  *  R  *  Y  C  C  T  T  C  F  N  G  I  *  S  T  S  L  S  E  G  C  Y  Q  Y  F  Q  Q  W  S  R  G  S  N  G  L  V  T  *  S  Y  E  *  S  R :   Y  *  C  S  Y  I  R  K  R  A  K  S  *  Y  *  S  I  *  S  *  Y  A  G  F  I  W  F  R  R  E  T  C  P  *  G  P  E  G  I   : G  R  *  C  *  K  S  Y  *  M  D  I  Q  Q  P  *  C  Q  Y  C  S  R  H  G  C  Y  Y  Q  *  W  S  C  S  *  Y  L  D  A  *  W  R  R  K :   I  Q  A  P  G  I  R  E  P  H  R  H  I  Y  P  L  W  P  L  C  R  S  Y  *  Q  R  W  P  V  G  D  F  Q  R  *  K  S  W  G  L  K  K  P  P  Y  G  Y  G  I  P  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42526" stop="42561"/>
                    <exon start="42965" stop="43163"/>
                    <exon start="43300" stop="43357"/>
                    <exon start="43426" stop="43548"/>
                    <exon start="43833" stop="43921"/>
                    <exon start="44009" stop="44098"/>
                    <exon start="45198" stop="45368"/>
                    <exon start="45459" stop="45577"/>
                    <exon start="45686" stop="45812"/>
                    <exon start="46864" stop="47024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASHPEFSTMRQQDALEFFLHFIDQVERINSGTPNFDPSRSFKFGIEERLQCSSGKVTYNRRNDYILSLNIPLERAINKKELAEFQNLKAERAAGGKELSADEIVRPRVSLKDCLDCFSAPEEVHDFYSTALTARTTAIKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPETIDISSMRSNGIQPGEELLPDSAAGDGEQSIKLLADDDIVAQLVSMGFNLLHCQKAAINTSNSGVEAAMDWLLNHMNDPDIDAPISENVQNPDIDQSKVDTLVSFGFEEKLAHKALKASGGDVEKATEWIFSSPSASTAADMDVTTSSGAAVDTLMPDGGGKYRLLGFVSHIGTSTHCGHYVAHINKDGRWVIFNDEKVGVSKNPPMDMGYLYFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50398" PGL_stop="50866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50398" e_stop="50866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="50398" e_stop="50866" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50398" stop="50866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTCTACCAAAAAAAAAAATGAATGCAGCAGCAGCAAAGGGATCGGCATGGATCGTAGCAGCAAGTATTGGAGCAGTAGAAGCATTAAAAGATCAAGGATTTGCCAGATGGAATTACGCTTTAAGATCGATTCATCACTATGCCAAATCTAATTTAATTGCTTCTAGTAATACCTCGGCTCGGAGATTCTCGACGGCTTCGGCGCCGGCGGCGTCTTCTCCGGCAGTCGTCTCCGGTGAGAAGCTGAGGAAAACGGAAGAGACGTTGAGTAAAGTTATAGATCTGAACTGTTGGGGTCCAAGCACTGTCAGATTTTAGTTTTATATACTTAAATTTGTTATATGATCTATTAATGAAAAGAGTAATAGAGATCAATTTTGAAAATTTACTCTTGTTTATATTTGAATATTTATGGAACAAAACACATTTTATATACAATTATCACTCAATTATAGTAATGTAATAT</gDNA_template>
            <first_frame> L  I  L  P  K  K  K  M  N  A  A  A  A  K  G  S  A  W  I  V  A  A  S  I  G  A  V  E  A  L  K  D  Q  G  F  A  R  W  N  Y  A  L  R  S  I  H  H  Y  A  K  S  N  L  I  A  S  S  N  T  S  A  R  R  F  S  T  A  S  A  P  A  A  S  S  P  A  V  V  S  G  E  K  L  R  K  T  E  E  T  L  S  K  V  I  D  L  N  C  W  G  P  S  T  V  R  F  *  F  Y  I  L  K  F  V  I  *  S  I  N  E  K  S  N  R  D  Q  F  *  K  F  T  L  V  Y  I  *  I  F  M  E  Q  N  T  F  Y  I  Q  L  S  L  N  Y  S  N  V  I  </first_frame>
            <second_frame>  *  F  Y  Q  K  K  K  *  M  Q  Q  Q  Q  R  D  R  H  G  S  *  Q  Q  V  L  E  Q  *  K  H  *  K  I  K  D  L  P  D  G  I  T  L  *  D  R  F  I  T  M  P  N  L  I  *  L  L  L  V  I  P  R  L  G  D  S  R  R  L  R  R  R  R  R  L  L  R  Q  S  S  P  V  R  S  *  G  K  R  K  R  R  *  V  K  L  *  I  *  T  V  G  V  Q  A  L  S  D  F  S  F  I  Y  L  N  L  L  Y  D  L  L  M  K  R  V  I  E  I  N  F  E  N  L  L  L  F  I  F  E  Y  L  W  N  K  T  H  F  I  Y  N  Y  H  S  I  I  V  M  *  Y </second_frame>
            <third_frame>   N  S  T  K  K  K  N  E  C  S  S  S  K  G  I  G  M  D  R  S  S  K  Y  W  S  S  R  S  I  K  R  S  R  I  C  Q  M  E  L  R  F  K  I  D  S  S  L  C  Q  I  *  F  N  C  F  *  *  Y  L  G  S  E  I  L  D  G  F  G  A  G  G  V  F  S  G  S  R  L  R  *  E  A  E  E  N  G  R  D  V  E  *  S  Y  R  S  E  L  L  G  S  K  H  C  Q  I  L  V  L  Y  T  *  I  C  Y  M  I  Y  *  *  K  E  *  *  R  S  I  L  K  I  Y  S  C  L  Y  L  N  I  Y  G  T  K  H  I  L  Y  T  I  I  T  Q  L  *  *  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50398" stop="50718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILPKKKMNAAAAKGSAWIVAASIGAVEALKDQGFARWNYALRSIHHYAKSNLIASSNTSARRFSTASAPAASSPAVVSGEKLRKTEETLSKVIDLNCWGPSTVRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="55624" PGL_stop="58924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55624" e_stop="55993"/>
            <exon e_start="56137" e_stop="56207"/>
            <exon e_start="56866" e_stop="56947"/>
            <exon e_start="57046" e_stop="57164"/>
            <exon e_start="58292" e_stop="58369"/>
            <exon e_start="58453" e_stop="58572"/>
            <exon e_start="58664" e_stop="58924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.727" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55624" e_stop="55993" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55994" i_stop="56136" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56137" e_stop="56207" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56208" i_stop="56865" i_length="658"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56866" e_stop="56947" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56948" i_stop="57045" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57046" e_stop="57164" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.874" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57165" i_stop="58291" i_length="1127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58292" e_stop="58369" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="58370" i_stop="58452" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58453" e_stop="58572" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.727">
            <gDNA_intron_boundary i_start="58573" i_stop="58663" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58664" e_stop="58924" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55624" stop="55993"/>
              <exon start="56137" stop="56207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55625" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55629" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56947"/>
              <exon start="57046" stop="57112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55630" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56947"/>
              <exon start="57046" stop="57164"/>
              <exon start="58292" stop="58331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55631" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55653" stop="55993"/>
              <exon start="56137" stop="56207"/>
              <exon start="56866" stop="56947"/>
              <exon start="57046" stop="57164"/>
              <exon start="58292" stop="58369"/>
              <exon start="58453" stop="58489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58311" stop="58369"/>
              <exon start="58453" stop="58572"/>
              <exon start="58664" stop="58924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58311" stop="58369"/>
              <exon start="58453" stop="58572"/>
              <exon start="58664" stop="58924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTGAAAGAGTTTCCTCACTAAGGGACAATTACAAGCTGCCCTAATTTTTATCACCGGAAAATTGCAACTTGTCGTCGGAAAACTCGACTAGATTCCGGCCAAAACTCCGTCCTATGGCAATCGCCGACCACCACAAGTCACATAACTCAGACGGAAAGCTCTGGAAGCTTTGTCCTCTATGGCAATCAGGAACTACGTCTTCTTCTTCGTCGTCTACACAAAATCTTCACTCTCAGAATCACAGTCACCAAAACGGCGTCGGATCTAACAGCTCTCGTGCTTCTACGTCTGTTAGCTCCGTTGCTAGATCACTGCTTCCGGCTAGACGTAGGCTTCGGCTCGATCCAGCTAACAGTCTCTACTTCCCTT : ATGAACCGGGAAAGCAGGTGAAGAGTGCTGTAAAGATTAAGAACACTAGCAAATCTTATGTTGCATTTAAG : TTTCAAACGACTGCACCAAAGAGCTGCTACATGCGACCTCCCGGAGGCATTCTCGAACCCGGTGAAAGTGTTATTGCCACTG : TCTTCAAGTTTGTGGAGCACCCTGAGAACAACGAAAAGCCTGTGGACCAAAAGAGCAAAGTTAAGTTCAAGATCATAAGCTTGAAGGTGAAAGAAGGTGTAGATTACGTACCTGAGTTG : TTTGAAGAACAAAAGGATCACGTGACTATTGAACGTATCCTACGGGTGGTGTTCTTGGACCCAGAACGACCTTCTCCA : GTGCTGGATAAACTAAAGCGTCAGTTGGCTGAAGCTGAGGCAGCATTAGAATCTCGCAAGAAACCTCCAGTTGAAACTGGACCTAAAGTTGTAGGAGAAGGTCTAGTAATAGATGAATGG : AAGGAACGAAGGGAGAAGTATCTCGCTCGGCAGCAGGTTGAGGCTGTTGATTCAGTGTAAAGCAACTAGTGGATTTTAATTCAAGTTCCTTCTTTTGCTATAATTGAAATGTCAAGCCACATCCATCCATTTTCTGCTTTAATTCTTTCGAAGGATGGTGGAAAACGGACAGTGTGGTCCGTCTTGTAAAGAAAGAATAATCAGTGGGAGGTTTAGTTTCTTCTTCATGGAGTAAAAGCTTGTTATGTAATTGCTTTGGTT</gDNA_template>
            <first_frame> R  E  R  V  S  S  L  R  D  N  Y  K  L  P  *  F  L  S  P  E  N  C  N  L  S  S  E  N  S  T  R  F  R  P  K  L  R  P  M  A  I  A  D  H  H  K  S  H  N  S  D  G  K  L  W  K  L  C  P  L  W  Q  S  G  T  T  S  S  S  S  S  S  T  Q  N  L  H  S  Q  N  H  S  H  Q  N  G  V  G  S  N  S  S  R  A  S  T  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  R  L  D  P  A  N  S  L  Y  F  P   : Y  E  P  G  K  Q  V  K  S  A  V  K  I  K  N  T  S  K  S  Y  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  Y  M  R  P  P  G  G  I  L  E  P  G  E  S  V  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  V  D  Q  K  S  K  V  K  F  K  I  I  S  L  K  V  K  E  G  V  D  Y  V  P  E  L  :  F  E  E  Q  K  D  H  V  T  I  E  R  I  L  R  V  V  F  L  D  P  E  R  P  S  P  :  V  L  D  K  L  K  R  Q  L  A  E  A  E  A  A  L  E  S  R  K  K  P  P  V  E  T  G  P  K  V  V  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  K  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  *  S  N  *  W  I  L  I  Q  V  P  S  F  A  I  I  E  M  S  S  H  I  H  P  F  S  A  L  I  L  S  K  D  G  G  K  R  T  V  W  S  V  L  *  R  K  N  N  Q  W  E  V  *  F  L  L  H  G  V  K  A  C  Y  V  I  A  L  V </first_frame>
            <second_frame>  V  K  E  F  P  H  *  G  T  I  T  S  C  P  N  F  Y  H  R  K  I  A  T  C  R  R  K  T  R  L  D  S  G  Q  N  S  V  L  W  Q  S  P  T  T  T  S  H  I  T  Q  T  E  S  S  G  S  F  V  L  Y  G  N  Q  E  L  R  L  L  L  R  R  L  H  K  I  F  T  L  R  I  T  V  T  K  T  A  S  D  L  T  A  L  V  L  L  R  L  L  A  P  L  L  D  H  C  F  R  L  D  V  G  F  G  S  I  Q  L  T  V  S  T  S  L  :  M  N  R  E  S  R  *  R  V  L  *  R  L  R  T  L  A  N  L  M  L  H  L  S :   F  K  R  L  H  Q  R  A  A  T  C  D  L  P  E  A  F  S  N  P  V  K  V  L  L  P  L  :  S  S  S  L  W  S  T  L  R  T  T  K  S  L  W  T  K  R  A  K  L  S  S  R  S  *  A  *  R  *  K  K  V  *  I  T  Y  L  S  C :   L  K  N  K  R  I  T  *  L  L  N  V  S  Y  G  W  C  S  W  T  Q  N  D  L  L  Q :   C  W  I  N  *  S  V  S  W  L  K  L  R  Q  H  *  N  L  A  R  N  L  Q  L  K  L  D  L  K  L  *  E  K  V  *  *  *  M  N  G :   R  N  E  G  R  S  I  S  L  G  S  R  L  R  L  L  I  Q  C  K  A  T  S  G  F  *  F  K  F  L  L  L  L  *  L  K  C  Q  A  T  S  I  H  F  L  L  *  F  F  R  R  M  V  E  N  G  Q  C  G  P  S  C  K  E  R  I  I  S  G  R  F  S  F  F  F  M  E  *  K  L  V  M  *  L  L  W   </second_frame>
            <third_frame>   *  K  S  F  L  T  K  G  Q  L  Q  A  A  L  I  F  I  T  G  K  L  Q  L  V  V  G  K  L  D  *  I  P  A  K  T  P  S  Y  G  N  R  R  P  P  Q  V  T  *  L  R  R  K  A  L  E  A  L  S  S  M  A  I  R  N  Y  V  F  F  F  V  V  Y  T  K  S  S  L  S  E  S  Q  S  P  K  R  R  R  I  *  Q  L  S  C  F  Y  V  C  *  L  R  C  *  I  T  A  S  G  *  T  *  A  S  A  R  S  S  *  Q  S  L  L  P  L :   *  T  G  K  A  G  E  E  C  C  K  D  *  E  H  *  Q  I  L  C  C  I  *   : V  S  N  D  C  T  K  E  L  L  H  A  T  S  R  R  H  S  R  T  R  *  K  C  Y  C  H  C :   L  Q  V  C  G  A  P  *  E  Q  R  K  A  C  G  P  K  E  Q  S  *  V  Q  D  H  K  L  E  G  E  R  R  C  R  L  R  T  *  V   : V  *  R  T  K  G  S  R  D  Y  *  T  Y  P  T  G  G  V  L  G  P  R  T  T  F  S   : S  A  G  *  T  K  A  S  V  G  *  S  *  G  S  I  R  I  S  Q  E  T  S  S  *  N  W  T  *  S  C  R  R  R  S  S  N  R  *  M   : E  G  T  K  G  E  V  S  R  S  A  A  G  *  G  C  *  F  S  V  K  Q  L  V  D  F  N  S  S  S  F  F  C  Y  N  *  N  V  K  P  H  P  S  I  F  C  F  N  S  F  E  G  W  W  K  T  D  S  V  V  R  L  V  K  K  E  *  S  V  G  G  L  V  S  S  S  W  S  K  S  L  L  C  N  C  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55669" stop="55993"/>
                    <exon start="56137" stop="56207"/>
                    <exon start="56866" stop="56947"/>
                    <exon start="57046" stop="57164"/>
                    <exon start="58292" stop="58369"/>
                    <exon start="58453" stop="58572"/>
                    <exon start="58664" stop="58723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSPENCNLSSENSTRFRPKLRPMAIADHHKSHNSDGKLWKLCPLWQSGTTSSSSSSTQNLHSQNHSHQNGVGSNSSRASTSVSSVARSLLPARRRLRLDPANSLYFPYEPGKQVKSAVKIKNTSKSYVAFKFQTTAPKSCYMRPPGGILEPGESVIATVFKFVEHPENNEKPVDQKSKVKFKIISLKVKEGVDYVPELFEEQKDHVTIERILRVVFLDPERPSPVLDKLKRQLAEAEAALESRKKPPVETGPKVVGEGLVIDEWKERREKYLARQQVEAVDSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62127" PGL_stop="59627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62127" e_stop="61463"/>
            <exon e_start="60295" e_stop="59627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62127" e_stop="61463" e_length="665"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61462" i_stop="60296" i_length="1167"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="60295" e_stop="59627" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62127" stop="61463"/>
              <exon start="60295" stop="60191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62123" stop="61656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62117" stop="61624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62116" stop="61463"/>
              <exon start="60295" stop="60249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62116" stop="61646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62083" stop="61463"/>
              <exon start="60295" stop="60260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62075" stop="61463"/>
              <exon start="60295" stop="60187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61984" stop="61463"/>
              <exon start="60295" stop="60129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61624" stop="61463"/>
              <exon start="60295" stop="59852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61617" stop="61463"/>
              <exon start="60295" stop="60013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61617" stop="61463"/>
              <exon start="60295" stop="60015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61617" stop="61463"/>
              <exon start="60295" stop="60101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61521" stop="61463"/>
              <exon start="60295" stop="59627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61521" stop="61463"/>
              <exon start="60295" stop="59634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60168" stop="59829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTTTTTCTCTCCACCATATCTTCATAATTTTTACTATTCTAAGCTTTCTATTTTCATTTCTCATATATATATTTTTTCCTTCCGTTTGAAAACCCCATAAAAACATAGGTTAATTTCTGATAAAATATATTTTCAGTACAATTTTCTCCATTAAAGCTTTAACGAATCACCAGGTTTGAGACGACTCGTCGGGAAATGGGGCGCCGTCTCTTCACCTGCTTCGGCAAAGGCGGTTCTTCTCATTCTTCTTCAAAAGATCCCGGCTCGAATAACAAGGACAGTGCGACGGCGGATTTGACGGCGGAGGAGCAAAAACGGTGCGGGCCGGTGGTGGTGGAGTTATTCTCATCGCAAGGCTGCGCCACCTCACCTGAAGCGGAGCTGTTGTTTTCGAGGATTGGGAGAGGCGATTTTAACCTAGAAATGCCGGTGATTTTGTTGGCTTATCATGTGGATTATTGGGATTATATGGGTTGGAAGGATCCGTTTGGGTCGAGTTTATGGACGGTTAAACAAAAAGCGTATGTGGAGACCTTAAATCTAGATACCATGTTTACGCCTCAAATTGTGGTTCAGGGAAGAGCTCAATGTGTTGGGAATGAACAAGATGCGGTTTTCTCTTGTATCAAATCTGCCCCCAGATTTGCTGCTCCTTCCTTCCAG : GCAACATTCGAGAGGCCAACACCAGAGTCATTGCAAGTATCTCTATTAGGATCTCTAAGGAGTAAGGTGGACAATGATGGTGCCAACGTGATGATTGCTCTGTACGAAGGTGGTCTGGTGACTGATATCGCTGCAGGAGAGAACAAAGGAAAAATGCTTGCGAATGACTATGTTGTCAGGAGGCTGGAAAAGCTTTGCTATGTAAAGGATATTACTGCAAAGAAGACAATCTCAGGAACTGTCAATTTCTCTCTTTGGGATGGCTTCAATAGCAGCAAATGTGGCGTAGCGCTCTTTGTGGAATCTGGCTCTCATCAAATATGTGGATCACAAAACTTTAAATTGCCAGAAAATCTCTGAATTCTTCGATGATATATCACTGATGTAAACTCTTGATTTGCTGGCTATAGGTTGAATTGCTTATAGTGCACGTTTCTGATTAAAATCAAATCTGCAAAACATTCTATATACCAGCTTGTTCCTTGTGTATATAGGTTGTGTGAGACTGTTCATGTTAGATTCTTCATCCTTTTTTCTTCTTACTGTTCATTCTTTTTCTTTTTTATAAACGGTTGGCATAGTGATTCTTTCCTTCTACTATGTATAATTGGGGATTATTAGAAAATGCGGCTACAGATATATTAGTGTAAATGCTTTTCCCAATTATGT</gDNA_template>
            <first_frame> T  F  F  S  P  P  Y  L  H  N  F  Y  Y  S  K  L  S  I  F  I  S  H  I  Y  I  F  S  F  R  L  K  T  P  *  K  H  R  L  I  S  D  K  I  Y  F  Q  Y  N  F  L  H  *  S  F  N  E  S  P  G  L  R  R  L  V  G  K  W  G  A  V  S  S  P  A  S  A  K  A  V  L  L  I  L  L  Q  K  I  P  A  R  I  T  R  T  V  R  R  R  I  *  R  R  R  S  K  N  G  A  G  R  W  W  W  S  Y  S  H  R  K  A  A  P  P  H  L  K  R  S  C  C  F  R  G  L  G  E  A  I  L  T  *  K  C  R  *  F  C  W  L  I  M  W  I  I  G  I  I  W  V  G  R  I  R  L  G  R  V  Y  G  R  L  N  K  K  R  M  W  R  P  *  I  *  I  P  C  L  R  L  K  L  W  F  R  E  E  L  N  V  L  G  M  N  K  M  R  F  S  L  V  S  N  L  P  P  D  L  L  L  L  P  S  R :   Q  H  S  R  G  Q  H  Q  S  H  C  K  Y  L  Y  *  D  L  *  G  V  R  W  T  M  M  V  P  T  *  *  L  L  C  T  K  V  V  W  *  L  I  S  L  Q  E  R  T  K  E  K  C  L  R  M  T  M  L  S  G  G  W  K  S  F  A  M  *  R  I  L  L  Q  R  R  Q  S  Q  E  L  S  I  S  L  F  G  M  A  S  I  A  A  N  V  A  *  R  S  L  W  N  L  A  L  I  K  Y  V  D  H  K  T  L  N  C  Q  K  I  S  E  F  F  D  D  I  S  L  M  *  T  L  D  L  L  A  I  G  *  I  A  Y  S  A  R  F  *  L  K  S  N  L  Q  N  I  L  Y  T  S  L  F  L  V  Y  I  G  C  V  R  L  F  M  L  D  S  S  S  F  F  L  L  T  V  H  S  F  S  F  L  *  T  V  G  I  V  I  L  S  F  Y  Y  V  *  L  G  I  I  R  K  C  G  Y  R  Y  I  S  V  N  A  F  P  N  Y   </first_frame>
            <second_frame>  P  F  S  L  H  H  I  F  I  I  F  T  I  L  S  F  L  F  S  F  L  I  Y  I  F  F  P  S  V  *  K  P  H  K  N  I  G  *  F  L  I  K  Y  I  F  S  T  I  F  S  I  K  A  L  T  N  H  Q  V  *  D  D  S  S  G  N  G  A  P  S  L  H  L  L  R  Q  R  R  F  F  S  F  F  F  K  R  S  R  L  E  *  Q  G  Q  C  D  G  G  F  D  G  G  G  A  K  T  V  R  A  G  G  G  G  V  I  L  I  A  R  L  R  H  L  T  *  S  G  A  V  V  F  E  D  W  E  R  R  F  *  P  R  N  A  G  D  F  V  G  L  S  C  G  L  L  G  L  Y  G  L  E  G  S  V  W  V  E  F  M  D  G  *  T  K  S  V  C  G  D  L  K  S  R  Y  H  V  Y  A  S  N  C  G  S  G  K  S  S  M  C  W  E  *  T  R  C  G  F  L  L  Y  Q  I  C  P  Q  I  C  C  S  F  L  P   : G  N  I  R  E  A  N  T  R  V  I  A  S  I  S  I  R  I  S  K  E  *  G  G  Q  *  W  C  Q  R  D  D  C  S  V  R  R  W  S  G  D  *  Y  R  C  R  R  E  Q  R  K  N  A  C  E  *  L  C  C  Q  E  A  G  K  A  L  L  C  K  G  Y  Y  C  K  E  D  N  L  R  N  C  Q  F  L  S  L  G  W  L  Q  *  Q  Q  M  W  R  S  A  L  C  G  I  W  L  S  S  N  M  W  I  T  K  L  *  I  A  R  K  S  L  N  S  S  M  I  Y  H  *  C  K  L  L  I  C  W  L  *  V  E  L  L  I  V  H  V  S  D  *  N  Q  I  C  K  T  F  Y  I  P  A  C  S  L  C  I  *  V  V  *  D  C  S  C  *  I  L  H  P  F  F  F  L  L  F  I  L  F  L  F  Y  K  R  L  A  *  *  F  F  P  S  T  M  Y  N  W  G  L  L  E  N  A  A  T  D  I  L  V  *  M  L  F  P  I  M  </second_frame>
            <third_frame>   L  F  L  S  T  I  S  S  *  F  L  L  F  *  A  F  Y  F  H  F  S  Y  I  Y  F  F  L  P  F  E  N  P  I  K  T  *  V  N  F  *  *  N  I  F  S  V  Q  F  S  P  L  K  L  *  R  I  T  R  F  E  T  T  R  R  E  M  G  R  R  L  F  T  C  F  G  K  G  G  S  S  H  S  S  S  K  D  P  G  S  N  N  K  D  S  A  T  A  D  L  T  A  E  E  Q  K  R  C  G  P  V  V  V  E  L  F  S  S  Q  G  C  A  T  S  P  E  A  E  L  L  F  S  R  I  G  R  G  D  F  N  L  E  M  P  V  I  L  L  A  Y  H  V  D  Y  W  D  Y  M  G  W  K  D  P  F  G  S  S  L  W  T  V  K  Q  K  A  Y  V  E  T  L  N  L  D  T  M  F  T  P  Q  I  V  V  Q  G  R  A  Q  C  V  G  N  E  Q  D  A  V  F  S  C  I  K  S  A  P  R  F  A  A  P  S  F  Q  :  A  T  F  E  R  P  T  P  E  S  L  Q  V  S  L  L  G  S  L  R  S  K  V  D  N  D  G  A  N  V  M  I  A  L  Y  E  G  G  L  V  T  D  I  A  A  G  E  N  K  G  K  M  L  A  N  D  Y  V  V  R  R  L  E  K  L  C  Y  V  K  D  I  T  A  K  K  T  I  S  G  T  V  N  F  S  L  W  D  G  F  N  S  S  K  C  G  V  A  L  F  V  E  S  G  S  H  Q  I  C  G  S  Q  N  F  K  L  P  E  N  L  *  I  L  R  *  Y  I  T  D  V  N  S  *  F  A  G  Y  R  L  N  C  L  *  C  T  F  L  I  K  I  K  S  A  K  H  S  I  Y  Q  L  V  P  C  V  Y  R  L  C  E  T  V  H  V  R  F  F  I  L  F  S  S  Y  C  S  F  F  F  F  F  I  N  G  W  H  S  D  S  F  L  L  L  C  I  I  G  D  Y  *  K  M  R  L  Q  I  Y  *  C  K  C  F  S  Q  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61963" stop="61463"/>
                    <exon start="60295" stop="59936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITRFETTRREMGRRLFTCFGKGGSSHSSSKDPGSNNKDSATADLTAEEQKRCGPVVVELFSSQGCATSPEAELLFSRIGRGDFNLEMPVILLAYHVDYWDYMGWKDPFGSSLWTVKQKAYVETLNLDTMFTPQIVVQGRAQCVGNEQDAVFSCIKSAPRFAAPSFQATFERPTPESLQVSLLGSLRSKVDNDGANVMIALYEGGLVTDIAAGENKGKMLANDYVVRRLEKLCYVKDITAKKTISGTVNFSLWDGFNSSKCGVALFVESGSHQICGSQNFKLPENL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59869" stop="59675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTFLIKIKSAKHSIYQLVPCVYRLCETVHVRFFILFSSYCSFFFFFINGWHSDSFLLLCIIGDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="63857" PGL_stop="65105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63857" e_stop="64053"/>
            <exon e_start="64737" e_stop="65105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.990"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="63857" e_stop="64053" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64054" i_stop="64736" i_length="683"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="64737" e_stop="65105" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63857" stop="64053"/>
              <exon start="64737" stop="65058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64787" stop="65105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64787" stop="65100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64788" stop="65101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64788" stop="65101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64857" stop="65101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACAAAAATTATTTTTTTATTTTTTAAAAAAAAATTCAACACTTTTTTTTTGGAAGATGTTGGAAGGGAAAGCAGTAATTGGAGATACAGATATGTTGGGAACCATGCAACAAGATGCATTAGATTTAGCTGCAAAGGCACTTGACTTCTTTGATGTCACTGAGGCCACTGAAATTGCACGTTTTCTTAAAAAG : GAATTTGATACAATGTATGGACCAGGGTGGCAATGCATAGTAGGGACAGATTTTGGTTCATTTGTAACACATTGTTATGGTTGTTTCATCCATTTCTACATTGGCAGCCTTGCTATTTTGCTCTTCAAGGGCTCTGCTGCCCTAGAGGACCCGAAAGCCGAGGCCGAAGCTGACCGATTTTCCACTCTGCAGGAAATAGCATGAAGTCACTTCTTCAGTAATTTTATCGTTGTCGACCTATATATACACTCCAATGTACAATATTAGGAAGTTTTAGAAGTCTTAATTTCACATTTATATTTTCATATCTATAAGTTATATATGTCAATTCGATGTCTTTCCTTTTTTTGGTGCTACATTATTTTCTTG</gDNA_template>
            <first_frame> K  D  K  N  Y  F  F  I  F  *  K  K  I  Q  H  F  F  F  G  R  C  W  K  G  K  Q  *  L  E  I  Q  I  C  W  E  P  C  N  K  M  H  *  I  *  L  Q  R  H  L  T  S  L  M  S  L  R  P  L  K  L  H  V  F  L  K  R :   N  L  I  Q  C  M  D  Q  G  G  N  A  *  *  G  Q  I  L  V  H  L  *  H  I  V  M  V  V  S  S  I  S  T  L  A  A  L  L  F  C  S  S  R  A  L  L  P  *  R  T  R  K  P  R  P  K  L  T  D  F  P  L  C  R  K  *  H  E  V  T  S  S  V  I  L  S  L  S  T  Y  I  Y  T  P  M  Y  N  I  R  K  F  *  K  S  *  F  H  I  Y  I  F  I  S  I  S  Y  I  C  Q  F  D  V  F  P  F  F  G  A  T  L  F  S   </first_frame>
            <second_frame>  K  T  K  I  I  F  L  F  F  K  K  K  F  N  T  F  F  L  E  D  V  G  R  E  S  S  N  W  R  Y  R  Y  V  G  N  H  A  T  R  C  I  R  F  S  C  K  G  T  *  L  L  *  C  H  *  G  H  *  N  C  T  F  S  *  K   : G  I  *  Y  N  V  W  T  R  V  A  M  H  S  R  D  R  F  W  F  I  C  N  T  L  L  W  L  F  H  P  F  L  H  W  Q  P  C  Y  F  A  L  Q  G  L  C  C  P  R  G  P  E  S  R  G  R  S  *  P  I  F  H  S  A  G  N  S  M  K  S  L  L  Q  *  F  Y  R  C  R  P  I  Y  T  L  Q  C  T  I  L  G  S  F  R  S  L  N  F  T  F  I  F  S  Y  L  *  V  I  Y  V  N  S  M  S  F  L  F  L  V  L  H  Y  F  L  </second_frame>
            <third_frame>   R  Q  K  L  F  F  Y  F  L  K  K  N  S  T  L  F  F  W  K  M  L  E  G  K  A  V  I  G  D  T  D  M  L  G  T  M  Q  Q  D  A  L  D  L  A  A  K  A  L  D  F  F  D  V  T  E  A  T  E  I  A  R  F  L  K  K  :  E  F  D  T  M  Y  G  P  G  W  Q  C  I  V  G  T  D  F  G  S  F  V  T  H  C  Y  G  C  F  I  H  F  Y  I  G  S  L  A  I  L  L  F  K  G  S  A  A  L  E  D  P  K  A  E  A  E  A  D  R  F  S  T  L  Q  E  I  A  *  S  H  F  F  S  N  F  I  V  V  D  L  Y  I  H  S  N  V  Q  Y  *  E  V  L  E  V  L  I  S  H  L  Y  F  H  I  Y  K  L  Y  M  S  I  R  C  L  S  F  F  W  C  Y  I  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63859" stop="64053"/>
                    <exon start="64737" stop="64940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKLFFYFLKKNSTLFFWKMLEGKAVIGDTDMLGTMQQDALDLAAKALDFFDVTEATEIARFLKKEFDTMYGPGWQCIVGTDFGSFVTHCYGCFIHFYIGSLAILLFKGSAALEDPKAEAEADRFSTLQEIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="66584" PGL_stop="68261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66584" e_stop="66901"/>
            <exon e_start="67021" e_stop="67182"/>
            <exon e_start="67649" e_stop="68261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66584" e_stop="66901" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67021" e_stop="67182" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67649" e_stop="68261" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66584" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66700" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66700" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66742" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66742" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68225"/>
            </gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E281018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66792" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66813" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66819" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66819" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66828" stop="66901"/>
              <exon start="67021" stop="67147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66884" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67039" stop="67182"/>
              <exon start="67649" stop="68099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67057" stop="67182"/>
              <exon start="67649" stop="68008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67074" stop="67182"/>
              <exon start="67649" stop="68235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67093" stop="67182"/>
              <exon start="67649" stop="68058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67111" stop="67182"/>
              <exon start="67649" stop="68239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67112" stop="67182"/>
              <exon start="67649" stop="68252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67116" stop="67182"/>
              <exon start="67649" stop="68241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67117" stop="67182"/>
              <exon start="67649" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67117" stop="67182"/>
              <exon start="67649" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67151" stop="67182"/>
              <exon start="67649" stop="67870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67153" stop="67182"/>
              <exon start="67649" stop="68238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67659" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67682" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67710" stop="68242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67742" stop="68224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67793" stop="68257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67798" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67834" stop="68224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67842" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67858" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67882" stop="68253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67908" stop="68242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67946" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67959" stop="68243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67964" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCAACACTTCTCATTGGTTGATACAAAAATTTCAAAACTATTTCACACCACAATTTTATAAAACACAAGAACCAGAATTGTTAAATGGGGCCCCTCCAGATATTTTTCCAACAGTTATTCTTTATATATAAGTATATAAATTGTGCAAGAAACTTAGTGAGGTCCAATTAATTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG : GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAACCAC</gDNA_template>
            <first_frame> T  Q  H  F  S  L  V  D  T  K  I  S  K  L  F  H  T  T  I  L  *  N  T  R  T  R  I  V  K  W  G  P  S  R  Y  F  S  N  S  Y  S  L  Y  I  S  I  *  I  V  Q  E  T  *  *  G  P  I  N  *  K  R  N  *  A  I  E  K  M  A  A  T  G  S  S  A  T  V  V  R  A  T  P  F  L  G  Q  T  K  Y  A  N  P  L  R  D  I  V  P  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  V  I  H  G  R  W  A  M  L  G  A  F  G  C  I  T  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  A  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  N  L  V  H  A  Q  S  I  L  A  V  L  G  F  Q  V  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  N  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  S  *  I  F  F  T  Y  R  L  C  S  F  V  P  L  N  H  S  F  I  M  Q  I  F  G  K  *  K  I  I  *  H  T  L  E  P  </first_frame>
            <second_frame>  L  N  T  S  H  W  L  I  Q  K  F  Q  N  Y  F  T  P  Q  F  Y  K  T  Q  E  P  E  L  L  N  G  A  P  P  D  I  F  P  T  V  I  L  Y  I  *  V  Y  K  L  C  K  K  L  S  E  V  Q  L  I  K  R  E  I  K  Q  *  R  K  W  Q  Q  Q  V  A  Q  P  Q  L  L  E  Q  L  H  F  W  A  R  P  N  M  L  T  P  *  G  I  *  F  L  W  A  L  P  D  S  P  * :   V  M  I  C  G  M  D  L  T  V  S  S  T  W  D  H  F  L  L  K  L  L  H  T  *  L  E  N  S  L  V  I  T  D  G  I  L  L  V  Y  L  L  I  P  R  P  L  L  R  T  E  L  L  R :   L  S  M  G  D  G  P  C  L  E  L  L  V  A  L  H  Q  K  F  L  K  N  G  *  K  W  T  S  K  N  Q  Y  G  S  K  L  E  P  R  S  S  V  K  V  G  W  T  I  W  A  T  Q  T  L  S  M  L  R  A  F  *  Q  Y  W  A  S  K  L  Y  *  W  A  L  *  K  V  S  E  L  M  G  F  L  E  L  V  K  A  T  I  S  T  Q  V  D  S  T  L  T  H  W  A  *  Q  M  T  Q  Q  L  S  R  N  S  R  S  R  K  S  R  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  S  P  A  K  A  H  L  K  I  Y  W  I  T  L  T  T  L  L  L  T  M  H  G  F  T  Q  L  S  L  F  L  D  L  K  F  F  S  H  I  D  F  V  A  L  Y  H  S  I  I  H  S  *  C  K  Y  L  A  N  E  K  L  F  N  I  H  L  N  H </second_frame>
            <third_frame>   S  T  L  L  I  G  *  Y  K  N  F  K  T  I  S  H  H  N  F  I  K  H  K  N  Q  N  C  *  M  G  P  L  Q  I  F  F  Q  Q  L  F  F  I  Y  K  Y  I  N  C  A  R  N  L  V  R  S  N  *  L  K  E  K  L  S  N  R  E  N  G  S  N  R  *  L  S  H  S  C  *  S  N  S  I  F  G  P  D  Q  I  C  *  P  P  K  G  Y  S  S  Y  G  L  C  Q  I  H  H   : E  *  *  F  V  V  W  T  *  P  C  Q  V  L  G  T  I  F  C  S  N  S  F  I  L  D  W  R  I  P  W  *  L  R  M  G  Y  C  W  F  I  C  *  S  R  G  L  C  *  E  Q  S  S  *   : G  Y  P  W  E  M  G  H  A  W  S  F  W  L  H  Y  T  R  S  S  *  K  M  G  K  S  G  L  Q  R  T  S  M  V  Q  S  W  S  P  D  L  Q  *  R  W  A  G  L  F  G  Q  P  K  P  C  P  C  S  E  H  S  S  S  I  G  L  P  S  C  T  N  G  P  C  R  R  F  Q  N  *  W  A  S  W  S  W  *  R  Q  Q  S  L  P  R  W  T  V  L  *  P  I  G  P  S  R  *  P  N  N  F  R  G  T  Q  G  Q  G  N  Q  E  R  K  I  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  H  R  Q  R  P  T  *  K  S  I  G  S  P  *  Q  P  C  C  *  Q  C  M  G  L  R  N  *  V  C  S  W  I  L  N  F  F  H  I  S  T  L  *  L  C  T  T  Q  S  F  I  H  N  A  N  I  W  Q  M  K  N  Y  L  T  Y  T  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66773" stop="66901"/>
                    <exon start="67021" stop="67182"/>
                    <exon start="67649" stop="68158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIEKMAATGSSATVVRATPFLGQTKYANPLRDIVPMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66691" e_stop="66698"/>
            <exon e_start="66764" e_stop="66901"/>
            <exon e_start="67021" e_stop="67182"/>
            <exon e_start="67649" e_stop="68260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.225" acc_prob="0.664" e_score="0.750"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="66691" e_stop="66698" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.225" acc_prob="0.664">
            <gDNA_intron_boundary i_start="66699" i_stop="66763" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66764" e_stop="66901" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67021" e_stop="67182" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67183" i_stop="67648" i_length="466"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67649" e_stop="68260" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66691" stop="66698"/>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277887" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66764" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66766" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66767" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66767" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66768" stop="66901"/>
              <exon start="67021" stop="67161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66769" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66772" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66773" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66774" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66774" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66774" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66775" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66779" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66780" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66780" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66780" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66780" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66782" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66787" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66787" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66788" stop="66901"/>
              <exon start="67021" stop="67102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66790" stop="66901"/>
              <exon start="67021" stop="67103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66792" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66813" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66819" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66819" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66828" stop="66901"/>
              <exon start="67021" stop="67147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66884" stop="66901"/>
              <exon start="67021" stop="67182"/>
              <exon start="67649" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67039" stop="67182"/>
              <exon start="67649" stop="68099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67057" stop="67182"/>
              <exon start="67649" stop="68008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67074" stop="67182"/>
              <exon start="67649" stop="68235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67093" stop="67182"/>
              <exon start="67649" stop="68058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67111" stop="67182"/>
              <exon start="67649" stop="68239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67112" stop="67182"/>
              <exon start="67649" stop="68252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67116" stop="67182"/>
              <exon start="67649" stop="68241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67117" stop="67182"/>
              <exon start="67649" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67117" stop="67182"/>
              <exon start="67649" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67151" stop="67182"/>
              <exon start="67649" stop="67870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67153" stop="67182"/>
              <exon start="67649" stop="68238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67659" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67682" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67710" stop="68242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67742" stop="68224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67793" stop="68257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67798" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67834" stop="68224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67842" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67858" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67882" stop="68253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67908" stop="68242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67946" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67959" stop="68243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67964" stop="68225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCAACA : AGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAG : GTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGGACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAGAGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAATCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACAACTTTCGCGGAACTCAAGGTCAAGGAAATCAAGAACGGAAGATTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTCACCGGCAAAGGCCCACTTGAAAATCTATTGGATCACCTTGACAACCCTGTTGCTAACAATGCATGGGTTTACGCAACTAAGTTTGTTCCTGGATCTTAAATTTTTTTCACATATCGACTTTGTAGCTTTGTACCACTCAATCATTCATTCATAATGCAAATATTTGGCAAATGAAAAATTATTTAACATACACTTGAACCA</gDNA_template>
            <first_frame> F  Q  Q :   E  I  K  Q  *  R  K  W  Q  Q  Q  V  A  Q  P  Q  L  L  E  Q  L  H  F  W  A  R  P  N  M  L  T  P  *  G  I  *  F  L  W  A  L  P  D  S  P  * :   V  M  I  C  G  M  D  L  T  V  S  S  T  W  D  H  F  L  L  K  L  L  H  T  *  L  E  N  S  L  V  I  T  D  G  I  L  L  V  Y  L  L  I  P  R  P  L  L  R  T  E  L  L  R :   L  S  M  G  D  G  P  C  L  E  L  L  V  A  L  H  Q  K  F  L  K  N  G  *  K  W  T  S  K  N  Q  Y  G  S  K  L  E  P  R  S  S  V  K  V  G  W  T  I  W  A  T  Q  T  L  S  M  L  R  A  F  *  Q  Y  W  A  S  K  L  Y  *  W  A  L  *  K  V  S  E  L  M  G  F  L  E  L  V  K  A  T  I  S  T  Q  V  D  S  T  L  T  H  W  A  *  Q  M  T  Q  Q  L  S  R  N  S  R  S  R  K  S  R  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  S  P  A  K  A  H  L  K  I  Y  W  I  T  L  T  T  L  L  L  T  M  H  G  F  T  Q  L  S  L  F  L  D  L  K  F  F  S  H  I  D  F  V  A  L  Y  H  S  I  I  H  S  *  C  K  Y  L  A  N  E  K  L  F  N  I  H  L  N   </first_frame>
            <second_frame>  S  N   : K  K  L  S  N  R  E  N  G  S  N  R  *  L  S  H  S  C  *  S  N  S  I  F  G  P  D  Q  I  C  *  P  P  K  G  Y  S  S  Y  G  L  C  Q  I  H  H   : E  *  *  F  V  V  W  T  *  P  C  Q  V  L  G  T  I  F  C  S  N  S  F  I  L  D  W  R  I  P  W  *  L  R  M  G  Y  C  W  F  I  C  *  S  R  G  L  C  *  E  Q  S  S  *   : G  Y  P  W  E  M  G  H  A  W  S  F  W  L  H  Y  T  R  S  S  *  K  M  G  K  S  G  L  Q  R  T  S  M  V  Q  S  W  S  P  D  L  Q  *  R  W  A  G  L  F  G  Q  P  K  P  C  P  C  S  E  H  S  S  S  I  G  L  P  S  C  T  N  G  P  C  R  R  F  Q  N  *  W  A  S  W  S  W  *  R  Q  Q  S  L  P  R  W  T  V  L  *  P  I  G  P  S  R  *  P  N  N  F  R  G  T  Q  G  Q  G  N  Q  E  R  K  I  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  H  R  Q  R  P  T  *  K  S  I  G  S  P  *  Q  P  C  C  *  Q  C  M  G  L  R  N  *  V  C  S  W  I  L  N  F  F  H  I  S  T  L  *  L  C  T  T  Q  S  F  I  H  N  A  N  I  W  Q  M  K  N  Y  L  T  Y  T  *  T  </second_frame>
            <third_frame>   P  T  :  R  N  *  A  I  E  K  M  A  A  T  G  S  S  A  T  V  V  R  A  T  P  F  L  G  Q  T  K  Y  A  N  P  L  R  D  I  V  P  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  V  I  H  G  R  W  A  M  L  G  A  F  G  C  I  T  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  A  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  N  L  V  H  A  Q  S  I  L  A  V  L  G  F  Q  V  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  N  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  S  *  I  F  F  T  Y  R  L  C  S  F  V  P  L  N  H  S  F  I  M  Q  I  F  G  K  *  K  I  I  *  H  T  L  E  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66773" stop="66901"/>
                    <exon start="67021" stop="67182"/>
                    <exon start="67649" stop="68158"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIEKMAATGSSATVVRATPFLGQTKYANPLRDIVPMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66757" e_stop="66901"/>
            <exon e_start="67021" e_stop="67344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66757" e_stop="66901" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66902" i_stop="67020" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="67021" e_stop="67344" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66757" stop="66901"/>
              <exon start="67021" stop="67344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66768" stop="66901"/>
              <exon start="67021" stop="67161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66788" stop="66901"/>
              <exon start="67021" stop="67102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66790" stop="66901"/>
              <exon start="67021" stop="67103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66828" stop="66901"/>
              <exon start="67021" stop="67147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACCCCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTTTCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAAGAACAGAGCTCTTGAGGTACTTTCACTTTTTCTTTTACTAGTAGTAAGTTTGTTTAAAATAAGTAACAGACATTTGCGTGACTAAAATTCATTTTTAGCTAAAAAAGTTTGAAAAATAAAAAAATTATCTTTTTCGTTTTATTTTATGTGACACTATTTGACTTGACACAGTGTTTTA</gDNA_template>
            <first_frame> L  K  E  K  L  S  N  R  E  N  G  S  N  R  *  L  S  H  S  C  *  S  N  S  I  F  G  P  D  Q  I  C  *  P  P  K  G  Y  S  S  Y  G  L  C  Q  I  H  H   : E  *  *  F  V  V  W  T  *  P  C  Q  V  L  G  T  I  F  C  S  N  S  F  I  L  D  W  R  I  P  W  *  L  R  M  G  Y  C  W  F  I  C  *  S  R  G  L  C  *  E  Q  S  S  *  G  T  F  T  F  S  F  T  S  S  K  F  V  *  N  K  *  Q  T  F  A  *  L  K  F  I  F  S  *  K  S  L  K  N  K  K  I  I  F  F  V  L  F  Y  V  T  L  F  D  L  T  Q  C  F  </first_frame>
            <second_frame>  *  K  R  N  *  A  I  E  K  M  A  A  T  G  S  S  A  T  V  V  R  A  T  P  F  L  G  Q  T  K  Y  A  N  P  L  R  D  I  V  P  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  V  L  S  L  F  L  L  L  V  V  S  L  F  K  I  S  N  R  H  L  R  D  *  N  S  F  L  A  K  K  V  *  K  I  K  K  L  S  F  S  F  Y  F  M  *  H  Y  L  T  *  H  S  V  L </second_frame>
            <third_frame>   K  R  E  I  K  Q  *  R  K  W  Q  Q  Q  V  A  Q  P  Q  L  L  E  Q  L  H  F  W  A  R  P  N  M  L  T  P  *  G  I  *  F  L  W  A  L  P  D  S  P  * :   V  M  I  C  G  M  D  L  T  V  S  S  T  W  D  H  F  L  L  K  L  L  H  T  *  L  E  N  S  L  V  I  T  D  G  I  L  L  V  Y  L  L  I  P  R  P  L  L  R  T  E  L  L  R  Y  F  H  F  F  F  Y  *  *  *  V  C  L  K  *  V  T  D  I  C  V  T  K  I  H  F  *  L  K  K  F  E  K  *  K  N  Y  L  F  R  F  I  L  C  D  T  I  *  L  D  T  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66773" stop="66901"/>
                    <exon start="67021" stop="67251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIEKMAATGSSATVVRATPFLGQTKYANPLRDIVPMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVLSLFLLLVVSLFKISNRHLRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="70608" PGL_stop="69164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70608" e_stop="70532"/>
            <exon e_start="70419" e_stop="70319"/>
            <exon e_start="69615" e_stop="69412"/>
            <exon e_start="69245" e_stop="69164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70608" e_stop="70532" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70531" i_stop="70420" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70419" e_stop="70319" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.951">
            <gDNA_intron_boundary i_start="70318" i_stop="69616" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="69615" e_stop="69412" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69411" i_stop="69246" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="69245" e_stop="69164" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70608" stop="70532"/>
              <exon start="70419" stop="70319"/>
              <exon start="69615" stop="69412"/>
              <exon start="69245" stop="69164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGTGATGTCTAAAGCGAAGGTTGCTCGTGAAGGAAGTGATGAGCAACTGGTGGCTGTCGTGCAGATACAATCAG : CTATTCGTGGTTGGTTGGCTAGAAGGGGTCTTCGCAAACTGCGAAATTCAAAAATGTTAAATGTAGACAAACGAAGATCAGGCAGAAAGACGGAGGTCAAG : GAGTTGCCTCGAGAAATCCTACCATCTGTTGTAGAAGACCTCGAAAGACGGGTTGCAAAGGCCGAGGCAACAACTGAACAAAAGGAAAAGGAAAATGCTGCCCTGAAGGAACAAGTAAACCAATTCGAGACCAGATGCTTAGAATATGAGGTCAAGATGAGGTCAATGGAGGAGATGTGGCAAAAGCAAATGACATCATTGCAG : GTTAGTCTAGCTGCAGCCAGGAACAGTCTTACCGCTGCTGACACTACTGGTCGACCTGGAAAGCTTGAAGGTTCCCCATCTC</gDNA_template>
            <first_frame> *  S  D  V  *  S  E  G  C  S  *  R  K  *  *  A  T  G  G  C  R  A  D  T  I  S :   Y  S  W  L  V  G  *  K  G  S  S  Q  T  A  K  F  K  N  V  K  C  R  Q  T  K  I  R  Q  K  D  G  G  Q   : G  V  A  S  R  N  P  T  I  C  C  R  R  P  R  K  T  G  C  K  G  R  G  N  N  *  T  K  G  K  G  K  C  C  P  E  G  T  S  K  P  I  R  D  Q  M  L  R  I  *  G  Q  D  E  V  N  G  G  D  V  A  K  A  N  D  I  I  A   : G  *  S  S  C  S  Q  E  Q  S  Y  R  C  *  H  Y  W  S  T  W  K  A  *  R  F  P  I   </first_frame>
            <second_frame>  K  V  M  S  K  A  K  V  A  R  E  G  S  D  E  Q  L  V  A  V  V  Q  I  Q  S   : A  I  R  G  W  L  A  R  R  G  L  R  K  L  R  N  S  K  M  L  N  V  D  K  R  R  S  G  R  K  T  E  V  K  :  E  L  P  R  E  I  L  P  S  V  V  E  D  L  E  R  R  V  A  K  A  E  A  T  T  E  Q  K  E  K  E  N  A  A  L  K  E  Q  V  N  Q  F  E  T  R  C  L  E  Y  E  V  K  M  R  S  M  E  E  M  W  Q  K  Q  M  T  S  L  Q  :  V  S  L  A  A  A  R  N  S  L  T  A  A  D  T  T  G  R  P  G  K  L  E  G  S  P  S  </second_frame>
            <third_frame>   K  *  C  L  K  R  R  L  L  V  K  E  V  M  S  N  W  W  L  S  C  R  Y  N  Q  :  L  F  V  V  G  W  L  E  G  V  F  A  N  C  E  I  Q  K  C  *  M  *  T  N  E  D  Q  A  E  R  R  R  S  R :   S  C  L  E  K  S  Y  H  L  L  *  K  T  S  K  D  G  L  Q  R  P  R  Q  Q  L  N  K  R  K  R  K  M  L  P  *  R  N  K  *  T  N  S  R  P  D  A  *  N  M  R  S  R  *  G  Q  W  R  R  C  G  K  S  K  *  H  H  C  R :   L  V  *  L  Q  P  G  T  V  L  P  L  L  T  L  L  V  D  L  E  S  L  K  V  P  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70607" stop="70532"/>
                    <exon start="70419" stop="70319"/>
                    <exon start="69615" stop="69412"/>
                    <exon start="69245" stop="69165"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMSKAKVAREGSDEQLVAVVQIQSAIRGWLARRGLRKLRNSKMLNVDKRRSGRKTEVKELPREILPSVVEDLERRVAKAEATTEQKEKENAALKEQVNQFETRCLEYEVKMRSMEEMWQKQMTSLQVSLAAARNSLTAADTTGRPGKLEGSPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="71925" PGL_stop="70852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71925" e_stop="71884"/>
            <exon e_start="71801" e_stop="71666"/>
            <exon e_start="71201" e_stop="70852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71925" e_stop="71884" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71883" i_stop="71802" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71801" e_stop="71666" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71665" i_stop="71202" i_length="464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71201" e_stop="70852" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71925" stop="71884"/>
              <exon start="71801" stop="71666"/>
              <exon start="71201" stop="70852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTATCCTACTAGGTTAACACATCAAGAATTCACAAGCAG : GTACGGCTTCCTTCTGCCAAAGGATAGTGCATGCCAAGATCCTTTAAGTATGTCAGTTGCCATTCTTCATCAATTTGGTATTCTTCCGGAACTGTACCAAGTTGGGTATACCAAGTTATATTTCCGATCAGGACAG : ATTGCTTCATTGGAGGATGCAAGGAACCAAGTTCTGCAAGGTACTCTTGAGTTGCAGAAGTGCTTCCGTGGTCATCGTGCTCGTCGGCACTTCCATGAACTGAAAGGAGGAGTAATCATACTTCAATCATGTAAAGCAGATCCCTTTGCAACTCGTCTCTTTTCTTCCCTTTTTTCGTTGAATATAATAGAAGATGATATTCATGAAGATTGTTGTGTCTATCAGGTTGGATGAGTATTTTTCCATTTCAAGACTATATTAGATGTCTTCAAAGTTTTGAGCACTTGGGGATGCCATTCAAGTGGTTTTAGAAAAAGAAAAAACATACAACTTTTGTCTCAAAAAAAAAA</gDNA_template>
            <first_frame> W  L  S  Y  *  V  N  T  S  R  I  H  K  Q  :  V  R  L  P  S  A  K  G  *  C  M  P  R  S  F  K  Y  V  S  C  H  S  S  S  I  W  Y  S  S  G  T  V  P  S  W  V  Y  Q  V  I  F  P  I  R  T   : D  C  F  I  G  G  C  K  E  P  S  S  A  R  Y  S  *  V  A  E  V  L  P  W  S  S  C  S  S  A  L  P  *  T  E  R  R  S  N  H  T  S  I  M  *  S  R  S  L  C  N  S  S  L  F  F  P  F  F  V  E  Y  N  R  R  *  Y  S  *  R  L  L  C  L  S  G  W  M  S  I  F  P  F  Q  D  Y  I  R  C  L  Q  S  F  E  H  L  G  M  P  F  K  W  F  *  K  K  K  K  H  T  T  F  V  S  K  K  K </first_frame>
            <second_frame>  G  Y  P  T  R  L  T  H  Q  E  F  T  S  R :   Y  G  F  L  L  P  K  D  S  A  C  Q  D  P  L  S  M  S  V  A  I  L  H  Q  F  G  I  L  P  E  L  Y  Q  V  G  Y  T  K  L  Y  F  R  S  G  Q  :  I  A  S  L  E  D  A  R  N  Q  V  L  Q  G  T  L  E  L  Q  K  C  F  R  G  H  R  A  R  R  H  F  H  E  L  K  G  G  V  I  I  L  Q  S  C  K  A  D  P  F  A  T  R  L  F  S  S  L  F  S  L  N  I  I  E  D  D  I  H  E  D  C  C  V  Y  Q  V  G  *  V  F  F  H  F  K  T  I  L  D  V  F  K  V  L  S  T  W  G  C  H  S  S  G  F  R  K  R  K  N  I  Q  L  L  S  Q  K  K   </second_frame>
            <third_frame>   A  I  L  L  G  *  H  I  K  N  S  Q  A   : G  T  A  S  F  C  Q  R  I  V  H  A  K  I  L  *  V  C  Q  L  P  F  F  I  N  L  V  F  F  R  N  C  T  K  L  G  I  P  S  Y  I  S  D  Q  D  R :   L  L  H  W  R  M  Q  G  T  K  F  C  K  V  L  L  S  C  R  S  A  S  V  V  I  V  L  V  G  T  S  M  N  *  K  E  E  *  S  Y  F  N  H  V  K  Q  I  P  L  Q  L  V  S  F  L  P  F  F  R  *  I  *  *  K  M  I  F  M  K  I  V  V  S  I  R  L  D  E  Y  F  S  I  S  R  L  Y  *  M  S  S  K  F  *  A  L  G  D  A  I  Q  V  V  L  E  K  E  K  T  Y  N  F  C  L  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71924" stop="71884"/>
                    <exon start="71801" stop="71666"/>
                    <exon start="71201" stop="70968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYPTRLTHQEFTSRYGFLLPKDSACQDPLSMSVAILHQFGILPELYQVGYTKLYFRSGQIASLEDARNQVLQGTLELQKCFRGHRARRHFHELKGGVIILQSCKADPFATRLFSSLFSLNIIEDDIHEDCCVYQVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="83556" PGL_stop="86432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83556" e_stop="83643"/>
            <exon e_start="83747" e_stop="83801"/>
            <exon e_start="86215" e_stop="86432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83556" e_stop="83643" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83644" i_stop="83746" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83747" e_stop="83801" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="83802" i_stop="86214" i_length="2413"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86215" e_stop="86432" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83556" stop="83643"/>
              <exon start="83747" stop="83801"/>
              <exon start="86215" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83557" stop="83643"/>
              <exon start="83747" stop="83801"/>
              <exon start="86215" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGCTATGGCGAAGAACAGAAACAAGAAGAAAAACGGCCTAGCTGCCATGGATGTCTCCACTGACCAGACGGTCATGGATGCCCAAG : CGATGGATACTTCAGAATCAGCTGCTCCAAAACCACATATAGGTGGATCACTTAG : AAAGACGAAGGGAGTACAAATGAAAAGGACGAAGAATGTTAGGAAAAAGAAGGCCATGGCAAAGGCTATTTCAAAAAGTGAGAAATTGGAGGAAAGAATCACTAGGAGTGAAAGCAAGATAGAGAGAACTAAAAATGCCAAACAGTTATACGAATGAATGGCTGAATGATATATTTTTTCCCTTTTCTGATTACTTATGAATGAAATGATTTTGATTT</gDNA_template>
            <first_frame> V  A  M  A  K  N  R  N  K  K  K  N  G  L  A  A  M  D  V  S  T  D  Q  T  V  M  D  A  Q   : A  M  D  T  S  E  S  A  A  P  K  P  H  I  G  G  S  L  R :   K  T  K  G  V  Q  M  K  R  T  K  N  V  R  K  K  K  A  M  A  K  A  I  S  K  S  E  K  L  E  E  R  I  T  R  S  E  S  K  I  E  R  T  K  N  A  K  Q  L  Y  E  *  M  A  E  *  Y  I  F  S  L  F  *  L  L  M  N  E  M  I  L  I  </first_frame>
            <second_frame>  *  L  W  R  R  T  E  T  R  R  K  T  A  *  L  P  W  M  S  P  L  T  R  R  S  W  M  P  K  :  R  W  I  L  Q  N  Q  L  L  Q  N  H  I  *  V  D  H  L   : E  R  R  R  E  Y  K  *  K  G  R  R  M  L  G  K  R  R  P  W  Q  R  L  F  Q  K  V  R  N  W  R  K  E  S  L  G  V  K  A  R  *  R  E  L  K  M  P  N  S  Y  T  N  E  W  L  N  D  I  F  F  P  F  S  D  Y  L  *  M  K  *  F  *  F </second_frame>
            <third_frame>   S  Y  G  E  E  Q  K  Q  E  E  K  R  P  S  C  H  G  C  L  H  *  P  D  G  H  G  C  P  S :   D  G  Y  F  R  I  S  C  S  K  T  T  Y  R  W  I  T  *  :  K  D  E  G  S  T  N  E  K  D  E  E  C  *  E  K  E  G  H  G  K  G  Y  F  K  K  *  E  I  G  G  K  N  H  *  E  *  K  Q  D  R  E  N  *  K  C  Q  T  V  I  R  M  N  G  *  M  I  Y  F  F  P  F  L  I  T  Y  E  *  N  D  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83556" stop="83643"/>
                    <exon start="83747" stop="83801"/>
                    <exon start="86215" stop="86371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAKNRNKKKNGLAAMDVSTDQTVMDAQAMDTSESAAPKPHIGGSLRKTKGVQMKRTKNVRKKKAMAKAISKSEKLEERITRSESKIERTKNAKQLYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="89543" PGL_stop="94007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89543" e_stop="89743"/>
            <exon e_start="90161" e_stop="90316"/>
            <exon e_start="91410" e_stop="91465"/>
            <exon e_start="92317" e_stop="92447"/>
            <exon e_start="92541" e_stop="92626"/>
            <exon e_start="92719" e_stop="92750"/>
            <exon e_start="93429" e_stop="93530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.974" acc_prob="0.879" e_score="0.968"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.628" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="89543" e_stop="89743" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89744" i_stop="90160" i_length="417"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="90161" e_stop="90316" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.879">
            <gDNA_intron_boundary i_start="90317" i_stop="91409" i_length="1093"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91410" e_stop="91465" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="91466" i_stop="92316" i_length="851"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92317" e_stop="92447" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.951">
            <gDNA_intron_boundary i_start="92448" i_stop="92540" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="92541" e_stop="92626" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.872" acc_prob="0.628">
            <gDNA_intron_boundary i_start="92627" i_stop="92718" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92719" e_stop="92750" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678"/>
          </intron>
          <exon e_serial="7" e_score="0.951">
            <gDNA_exon_boundary e_start="93429" e_stop="93530" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89543" stop="89743"/>
              <exon start="90161" stop="90316"/>
              <exon start="91410" stop="91465"/>
              <exon start="92317" stop="92447"/>
              <exon start="92541" stop="92626"/>
              <exon start="92719" stop="92750"/>
              <exon start="93429" stop="93530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAAAATATCAACGTTCAATCGGCAAACCAAGCTCACTGTTTCTTCTTCTTCTCTCTTTCATGGCGCTCCAGCACTCGCCTATTGGCACAATTACTTCTTCAGCTCAAATGAAGCTGGCTGTTAGCAGTTTGAGGTGCTACGAGCACCTTCGTCCTATCACTATCTCAAGCTTCAAGCGTTTTCCACGAAGAATTCAGG : GTGCGCATAGTAGTGTGGAGCAAAGGAAGTTGCTTAGCAGAGGTATTTCGACAAGCAAAGAAAAATCGAAGGATCTCCATGAAGATGTTTTTTCTTTGCCAATGGCTTGCACTAGTGCCCCAATTAGATTCACAATGCTCTCAACTGCTGTCATAG : CCACAAATTTGGTTGCAACACATACCGCAAATGCTTTGACTATGGATAACATGATG : GATTTCTCTAGCGCTGTCTATACATTAGCTGATGGAAGCATTGGAGATCTTTTTGGTGGCCTTCTGTATTCTGCTGGTCAACAAGCTAATGAAGCTGTTCAGGGCCAGTTGACTGCTCTTAGTTTTACTAG : TTTGGCCACTATTTTTGGTGCCGGGCTTGTAACTAGTCTGTCGCCTTGTACACTCAGCGTACTGCCTCTGACCCTTGGTTATATTG : GGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG : GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGA</gDNA_template>
            <first_frame> I  K  N  I  N  V  Q  S  A  N  Q  A  H  C  F  F  F  F  S  L  S  W  R  S  S  T  R  L  L  A  Q  L  L  L  Q  L  K  *  S  W  L  L  A  V  *  G  A  T  S  T  F  V  L  S  L  S  Q  A  S  S  V  F  H  E  E  F  R  :  V  R  I  V  V  W  S  K  G  S  C  L  A  E  V  F  R  Q  A  K  K  N  R  R  I  S  M  K  M  F  F  L  C  Q  W  L  A  L  V  P  Q  L  D  S  Q  C  S  Q  L  L  S  *  :  P  Q  I  W  L  Q  H  I  P  Q  M  L  *  L  W  I  T  *  W :   I  S  L  A  L  S  I  H  *  L  M  E  A  L  E  I  F  L  V  A  F  C  I  L  L  V  N  K  L  M  K  L  F  R  A  S  *  L  L  L  V  L  L   : V  W  P  L  F  L  V  P  G  L  *  L  V  C  R  L  V  H  S  A  Y  C  L  *  P  L  V  I  L  :  G  L  L  V  L  G  K  A  E  *  R :   L  L  E  I  Q  L  H  L  H  W  D  W  Q  P  H  *  H  Y  W  V  L  R  L  H  L  L  E  R  H  M  D  K  *   </first_frame>
            <second_frame>  *  K  I  S  T  F  N  R  Q  T  K  L  T  V  S  S  S  S  L  F  H  G  A  P  A  L  A  Y  W  H  N  Y  F  F  S  S  N  E  A  G  C  *  Q  F  E  V  L  R  A  P  S  S  Y  H  Y  L  K  L  Q  A  F  S  T  K  N  S  G :   C  A  *  *  C  G  A  K  E  V  A  *  Q  R  Y  F  D  K  Q  R  K  I  E  G  S  P  *  R  C  F  F  F  A  N  G  L  H  *  C  P  N  *  I  H  N  A  L  N  C  C  H  S :   H  K  F  G  C  N  T  Y  R  K  C  F  D  Y  G  *  H  D   : G  F  L  *  R  C  L  Y  I  S  *  W  K  H  W  R  S  F  W  W  P  S  V  F  C  W  S  T  S  *  *  S  C  S  G  P  V  D  C  S  *  F  Y  *  :  F  G  H  Y  F  W  C  R  A  C  N  *  S  V  A  L  Y  T  Q  R  T  A  S  D  P  W  L  Y  W :   G  F  W  F  W  E  K  P  S  S   : G  C  W  R  F  N  C  I  C  T  G  I  G  N  H  T  S  I  I  G  Y  C  G  C  I  C  W  K  G  I  W  T  N  R  </second_frame>
            <third_frame>   K  K  Y  Q  R  S  I  G  K  P  S  S  L  F  L  L  L  L  S  F  M  A  L  Q  H  S  P  I  G  T  I  T  S  S  A  Q  M  K  L  A  V  S  S  L  R  C  Y  E  H  L  R  P  I  T  I  S  S  F  K  R  F  P  R  R  I  Q   : G  A  H  S  S  V  E  Q  R  K  L  L  S  R  G  I  S  T  S  K  E  K  S  K  D  L  H  E  D  V  F  S  L  P  M  A  C  T  S  A  P  I  R  F  T  M  L  S  T  A  V  I   : A  T  N  L  V  A  T  H  T  A  N  A  L  T  M  D  N  M  M  :  D  F  S  S  A  V  Y  T  L  A  D  G  S  I  G  D  L  F  G  G  L  L  Y  S  A  G  Q  Q  A  N  E  A  V  Q  G  Q  L  T  A  L  S  F  T  S :   L  A  T  I  F  G  A  G  L  V  T  S  L  S  P  C  T  L  S  V  L  P  L  T  L  G  Y  I   : G  A  F  G  S  G  K  S  R  V  A  :  V  V  G  D  S  I  A  F  A  L  G  L  A  T  T  L  A  L  L  G  I  A  A  A  F  A  G  K  A  Y  G  Q  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89545" stop="89743"/>
                    <exon start="90161" stop="90316"/>
                    <exon start="91410" stop="91465"/>
                    <exon start="92317" stop="92447"/>
                    <exon start="92541" stop="92626"/>
                    <exon start="92719" stop="92750"/>
                    <exon start="93429" stop="93530"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYQRSIGKPSSLFLLLLSFMALQHSPIGTITSSAQMKLAVSSLRCYEHLRPITISSFKRFPRRIQGAHSSVEQRKLLSRGISTSKEKSKDLHEDVFSLPMACTSAPIRFTMLSTAVIATNLVATHTANALTMDNMMDFSSAVYTLADGSIGDLFGGLLYSAGQQANEAVQGQLTALSFTSLATIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRVAVVGDSIAFALGLATTLALLGIAAAFAGKAYGQIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92711" e_stop="92750"/>
            <exon e_start="93429" e_stop="94007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.975"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="92711" e_stop="92750" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92751" i_stop="93428" i_length="678"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="93429" e_stop="94007" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="92750"/>
              <exon start="93429" stop="94007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCTTAGGGGCTTTTGGTTCTGGGAAAAGCCGAGTAGCG : GTTGTTGGAGATTCAATTGCATTTGCACTGGGATTGGCAACCACACTAGCATTATTGGGTATTGCGGCTGCATTTGCTGGAAAGGCATATGGACAAATAGGACAAGGATTGCCCGTGGCTGCTTCCTTTTTAGCTATTGTTATGGGGCTAAACCTGTTAGAGGTAACTACATATGTTGAATGCTTCGATAGTGTAGTAATACCCTTTTACTTCTAAGTTTTTGTTTTGAGACTTTGTTGAGTACTATTGTATTTGTTCTTTATTGAGCCCATGCTAACATTTGTTTTTTGTCTGATATTCAGATATTTTGTTCTAAAGGAATTACATCGCTTGTCGTTTTGATATGTTAATCACTCTTGCTTGCATAAATACCAAAAGAGTGATGTTCTATGCAGTACCGGATGCCCCACATCATCTTTACCATAATGAGAACCTGTGAAACAAAAGAAGAGAGATCCGTCTAGGCATTTCGATAGAATGATGACTGCTACTTTTGGTACCTGGATAGTGAAAATTGTGGATAAAACCATCGGATCTAAGTAAAAATTGTATGTCTGGATTTAGCAAAAGCTATGCTTT</gDNA_template>
            <first_frame> D  L  R  G  F  W  F  W  E  K  P  S  S   : G  C  W  R  F  N  C  I  C  T  G  I  G  N  H  T  S  I  I  G  Y  C  G  C  I  C  W  K  G  I  W  T  N  R  T  R  I  A  R  G  C  F  L  F  S  Y  C  Y  G  A  K  P  V  R  G  N  Y  I  C  *  M  L  R  *  C  S  N  T  L  L  L  L  S  F  C  F  E  T  L  L  S  T  I  V  F  V  L  Y  *  A  H  A  N  I  C  F  L  S  D  I  Q  I  F  C  S  K  G  I  T  S  L  V  V  L  I  C  *  S  L  L  L  A  *  I  P  K  E  *  C  S  M  Q  Y  R  M  P  H  I  I  F  T  I  M  R  T  C  E  T  K  E  E  R  S  V  *  A  F  R  *  N  D  D  C  Y  F  W  Y  L  D  S  E  N  C  G  *  N  H  R  I  *  V  K  I  V  C  L  D  L  A  K  A  M  L  </first_frame>
            <second_frame>  T  L  G  A  F  G  S  G  K  S  R  V  A  :  V  V  G  D  S  I  A  F  A  L  G  L  A  T  T  L  A  L  L  G  I  A  A  A  F  A  G  K  A  Y  G  Q  I  G  Q  G  L  P  V  A  A  S  F  L  A  I  V  M  G  L  N  L  L  E  V  T  T  Y  V  E  C  F  D  S  V  V  I  P  F  Y  F  *  V  F  V  L  R  L  C  *  V  L  L  Y  L  F  F  I  E  P  M  L  T  F  V  F  C  L  I  F  R  Y  F  V  L  K  E  L  H  R  L  S  F  *  Y  V  N  H  S  C  L  H  K  Y  Q  K  S  D  V  L  C  S  T  G  C  P  T  S  S  L  P  *  *  E  P  V  K  Q  K  K  R  D  P  S  R  H  F  D  R  M  M  T  A  T  F  G  T  W  I  V  K  I  V  D  K  T  I  G  S  K  *  K  L  Y  V  W  I  *  Q  K  L  C  F </second_frame>
            <third_frame>   P  *  G  L  L  V  L  G  K  A  E  *  R :   L  L  E  I  Q  L  H  L  H  W  D  W  Q  P  H  *  H  Y  W  V  L  R  L  H  L  L  E  R  H  M  D  K  *  D  K  D  C  P  W  L  L  P  F  *  L  L  L  W  G  *  T  C  *  R  *  L  H  M  L  N  A  S  I  V  *  *  Y  P  F  T  S  K  F  L  F  *  D  F  V  E  Y  Y  C  I  C  S  L  L  S  P  C  *  H  L  F  F  V  *  Y  S  D  I  L  F  *  R  N  Y  I  A  C  R  F  D  M  L  I  T  L  A  C  I  N  T  K  R  V  M  F  Y  A  V  P  D  A  P  H  H  L  Y  H  N  E  N  L  *  N  K  R  R  E  I  R  L  G  I  S  I  E  *  *  L  L  L  L  V  P  G  *  *  K  L  W  I  K  P  S  D  L  S  K  N  C  M  S  G  F  S  K  S  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92712" stop="92750"/>
                    <exon start="93429" stop="93644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGAFGSGKSRVAVVGDSIAFALGLATTLALLGIAAAFAGKAYGQIGQGLPVAASFLAIVMGLNLLEVTTYVECFDSVVIPFYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92711" stop="92750"/>
                    <exon start="93429" stop="93607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLRGFWFWEKPSSGCWRFNCICTGIGNHTSIIGYCGCICWKGIWTNRTRIARGCFLFSYCYGAKPVRGNYIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="97603" PGL_stop="96922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97603" e_stop="96922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="97603" e_stop="96922" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97603" stop="96922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97603" stop="96923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97602" stop="96976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCATTGAGAGTATCAAAACCTAAACGGCAAGACACGCTGGAGAGTACATGGAAGACGATAACGGAGGGCCGTGCAATGCCACTAACGAGGCACCTGAGGAAATCGGACACGTGGGAGACATACGGTGGTCGGAACCCGGTTACACCACCACCGCAGAAGATGAAGAAATCTGAGACGTTCAATGACAGAACTACCCCTGACTCCTCGCCATTGCTGACTCCGTCCCCGGGTGGTTCAGGGAAACTTAAGAAAGAGCCATCGCTAAGTCAAGACGAGCTGAACAGGCGAGTTGAAGCGTTTATTAAGAAGTTTAATGAAGATATGAGGTTGCAGAGGCAGCAGTCGATGCAACAGTACACTCAGATGATCAATCGAGGCTCACATTAGGAGTTTTTTTCATATAAACAGAGAAGCTCTCTCTTTTTTCATGTTTTATGGCTTATAGTGAATGCATATTGTTATTTATTCATATTTCTTTTATCGAGAAATTCTCCCAAAAAAAACTAAAAAACTACAGGAAGCTGTAATCCAGTTAGAACATAGACTATATTATCGGAAAGTTTGAGTTGTAATGTTTTATTTTTCTTTCATGTGGATATTATATGGCCTTAACATGTGATCGAACAGTGTTGTGTTCTCCATACAGAAATTGAAATATTTTTATTGATTTTTGAACAAT</gDNA_template>
            <first_frame> G  A  L  R  V  S  K  P  K  R  Q  D  T  L  E  S  T  W  K  T  I  T  E  G  R  A  M  P  L  T  R  H  L  R  K  S  D  T  W  E  T  Y  G  G  R  N  P  V  T  P  P  P  Q  K  M  K  K  S  E  T  F  N  D  R  T  T  P  D  S  S  P  L  L  T  P  S  P  G  G  S  G  K  L  K  K  E  P  S  L  S  Q  D  E  L  N  R  R  V  E  A  F  I  K  K  F  N  E  D  M  R  L  Q  R  Q  Q  S  M  Q  Q  Y  T  Q  M  I  N  R  G  S  H  *  E  F  F  S  Y  K  Q  R  S  S  L  F  F  H  V  L  W  L  I  V  N  A  Y  C  Y  L  F  I  F  L  L  S  R  N  S  P  K  K  N  *  K  T  T  G  S  C  N  P  V  R  T  *  T  I  L  S  E  S  L  S  C  N  V  L  F  F  F  H  V  D  I  I  W  P  *  H  V  I  E  Q  C  C  V  L  H  T  E  I  E  I  F  L  L  I  F  E  Q  </first_frame>
            <second_frame>  E  H  *  E  Y  Q  N  L  N  G  K  T  R  W  R  V  H  G  R  R  *  R  R  A  V  Q  C  H  *  R  G  T  *  G  N  R  T  R  G  R  H  T  V  V  G  T  R  L  H  H  H  R  R  R  *  R  N  L  R  R  S  M  T  E  L  P  L  T  P  R  H  C  *  L  R  P  R  V  V  Q  G  N  L  R  K  S  H  R  *  V  K  T  S  *  T  G  E  L  K  R  L  L  R  S  L  M  K  I  *  G  C  R  G  S  S  R  C  N  S  T  L  R  *  S  I  E  A  H  I  R  S  F  F  H  I  N  R  E  A  L  S  F  F  M  F  Y  G  L  *  *  M  H  I  V  I  Y  S  Y  F  F  Y  R  E  I  L  P  K  K  T  K  K  L  Q  E  A  V  I  Q  L  E  H  R  L  Y  Y  R  K  V  *  V  V  M  F  Y  F  S  F  M  W  I  L  Y  G  L  N  M  *  S  N  S  V  V  F  S  I  Q  K  L  K  Y  F  Y  *  F  L  N  N </second_frame>
            <third_frame>   S  I  E  S  I  K  T  *  T  A  R  H  A  G  E  Y  M  E  D  D  N  G  G  P  C  N  A  T  N  E  A  P  E  E  I  G  H  V  G  D  I  R  W  S  E  P  G  Y  T  T  T  A  E  D  E  E  I  *  D  V  Q  *  Q  N  Y  P  *  L  L  A  I  A  D  S  V  P  G  W  F  R  E  T  *  E  R  A  I  A  K  S  R  R  A  E  Q  A  S  *  S  V  Y  *  E  V  *  *  R  Y  E  V  A  E  A  A  V  D  A  T  V  H  S  D  D  Q  S  R  L  T  L  G  V  F  F  I  *  T  E  K  L  S  L  F  S  C  F  M  A  Y  S  E  C  I  L  L  F  I  H  I  S  F  I  E  K  F  S  Q  K  K  L  K  N  Y  R  K  L  *  S  S  *  N  I  D  Y  I  I  G  K  F  E  L  *  C  F  I  F  L  S  C  G  Y  Y  M  A  L  T  C  D  R  T  V  L  C  S  P  Y  R  N  *  N  I  F  I  D  F  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97603" stop="97214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALRVSKPKRQDTLESTWKTITEGRAMPLTRHLRKSDTWETYGGRNPVTPPPQKMKKSETFNDRTTPDSSPLLTPSPGGSGKLKKEPSLSQDELNRRVEAFIKKFNEDMRLQRQQSMQQYTQMINRGSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="109195" PGL_stop="102325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109195" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103856" e_stop="103669"/>
            <exon e_start="103589" e_stop="103353"/>
            <exon e_start="103232" e_stop="103174"/>
            <exon e_start="102693" e_stop="102325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109195" e_stop="109009" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103856" e_stop="103669" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.787">
            <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103589" e_stop="103353" e_length="237"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="103174" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102693" e_stop="102325" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109195" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109187" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="107018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109171" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109166" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109135" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109119" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104495" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104469" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103837" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103500" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103473" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103419" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281069" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG : CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</gDNA_template>
            <first_frame> L  S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : V  Q  Y  C  V  T  F  C  Y  A  S  T  T  T  C  Y  A  G  A  T  T  V  F  T  D  G  C  G  C  C  R  W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  :  L  L  L  N  G  T  E  H  F  Q  Q  R  Y  C  A  A  R  T  K  Q  A  S  S  Y  P  D  I  I  K  L  H  T  V  N  K  R  I  R  L  F  I  L  D  T  G  Y  V  H  K  T  L  K  N  Q  Q  G  S  I  L  A  I  S  I  Q  I  V  F  F  S  H  R  K  L  A  F  V  V  L  L  L  F  W  R  L  *  T  K  C  R  G  P  N  I  E  F  S  L  R  *  W  L  D  L  Y  F  C  I  W  K  N  K  L  S  K  I  G  W  Y  S  I  L  F  L </first_frame>
            <second_frame>  F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  S  N  I  V  S  P  F  A  M  H  Q  Q  Q  L  A  M  L  A  Q  Q  Q  S  L  L  M  A  A  A  A  A  G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  S :   F  Y  S  M  G  Q  N  T  S  S  N  G  I  V  P  P  G  P  S  K  Q  A  A  T  P  I  S  S  S  S  T  Q  S  T  K  E  F  D  F  S  S  L  T  Q  G  M  F  T  K  R  *  K  T  N  K  E  A  Y  *  L  L  V  Y  K  L  F  F  F  P  T  G  N  *  L  L  L  F  Y  S  C  F  G  D  C  K  L  N  V  E  D  Q  I  L  S  F  L  *  G  D  G  L  I  C  I  F  V  S  G  K  I  S  S  Q  R  L  D  G  I  R  F  F  S   </second_frame>
            <third_frame>   F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  S :   P  I  L  C  H  L  L  L  C  I  N  N  N  L  L  C  W  R  N  N  S  L  Y  *  W  L  R  L  L  Q  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P   : A  S  T  Q  W  D  R  T  L  P  A  T  V  L  C  R  Q  D  Q  A  S  K  Q  L  P  R  Y  H  Q  A  P  H  S  Q  Q  K  N  S  T  F  H  P  *  H  R  V  C  S  Q  N  A  E  K  P  T  R  K  H  T  S  Y  *  Y  T  N  C  F  F  F  P  Q  E  I  S  F  C  C  S  T  P  V  L  E  I  V  N  *  M  *  R  T  K  Y  *  V  F  F  K  V  M  A  *  F  V  F  L  Y  L  E  K  *  A  L  K  D  W  M  V  F  D  S  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103856" stop="103669"/>
                    <exon start="103589" stop="103353"/>
                    <exon start="103232" stop="103174"/>
                    <exon start="102693" stop="102540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1443</number_coding_nucleotides>
                  <number_encoded_amino_acids>481</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKSNIVSPFAMHQQQLAMLAQQQSLLMAAAAAGGAVRLPVNAQQSTNGTNMVNQNWPNLGYQFPGVIMPAAGKTELEKYMQVGNMGPAHVVGNSVPIPASSFYSMGQNTSSNGIVPPGPSKQAATPISSSSTQSTKEFDFSSLTQGMFTKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109195" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103829" e_stop="103669"/>
            <exon e_start="103589" e_stop="103353"/>
            <exon e_start="103232" e_stop="103174"/>
            <exon e_start="102693" e_stop="102325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.787" e_score="0.963"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109195" e_stop="109009" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104293" i_stop="103830" i_length="464"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="103829" e_stop="103669" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.787">
            <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="103589" e_stop="103353" e_length="237"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="103174" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102693" e_stop="102325" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109195" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109187" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="107018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109171" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109166" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109135" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109119" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105590" stop="105360"/>
              <exon start="104501" stop="104294"/>
              <exon start="103829" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104501" stop="104294"/>
              <exon start="103829" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103500" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103473" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103419" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281069" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : ATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG : CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</gDNA_template>
            <first_frame> L  S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : V  Q  Y  C  V  T  F  C  Y  A  S  T  T  T  C  Y  A  G  A  T  T  V  F  T  D  G  C  G  C  C  R  W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  :  L  L  L  N  G  T  E  H  F  Q  Q  R  Y  C  A  A  R  T  K  Q  A  S  S  Y  P  D  I  I  K  L  H  T  V  N  K  R  I  R  L  F  I  L  D  T  G  Y  V  H  K  T  L  K  N  Q  Q  G  S  I  L  A  I  S  I  Q  I  V  F  F  S  H  R  K  L  A  F  V  V  L  L  L  F  W  R  L  *  T  K  C  R  G  P  N  I  E  F  S  L  R  *  W  L  D  L  Y  F  C  I  W  K  N  K  L  S  K  I  G  W  Y  S  I  L  F  L </first_frame>
            <second_frame>  F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : Y  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  S  N  I  V  S  P  F  A  M  H  Q  Q  Q  L  A  M  L  A  Q  Q  Q  S  L  L  M  A  A  A  A  A  G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  S :   F  Y  S  M  G  Q  N  T  S  S  N  G  I  V  P  P  G  P  S  K  Q  A  A  T  P  I  S  S  S  S  T  Q  S  T  K  E  F  D  F  S  S  L  T  Q  G  M  F  T  K  R  *  K  T  N  K  E  A  Y  *  L  L  V  Y  K  L  F  F  F  P  T  G  N  *  L  L  L  F  Y  S  C  F  G  D  C  K  L  N  V  E  D  Q  I  L  S  F  L  *  G  D  G  L  I  C  I  F  V  S  G  K  I  S  S  Q  R  L  D  G  I  R  F  F  S   </second_frame>
            <third_frame>   F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  S :   P  I  L  C  H  L  L  L  C  I  N  N  N  L  L  C  W  R  N  N  S  L  Y  *  W  L  R  L  L  Q  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P   : A  S  T  Q  W  D  R  T  L  P  A  T  V  L  C  R  Q  D  Q  A  S  K  Q  L  P  R  Y  H  Q  A  P  H  S  Q  Q  K  N  S  T  F  H  P  *  H  R  V  C  S  Q  N  A  E  K  P  T  R  K  H  T  S  Y  *  Y  T  N  C  F  F  F  P  Q  E  I  S  F  C  C  S  T  P  V  L  E  I  V  N  *  M  *  R  T  K  Y  *  V  F  F  K  V  M  A  *  F  V  F  L  Y  L  E  K  *  A  L  K  D  W  M  V  F  D  S  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103829" stop="103669"/>
                    <exon start="103589" stop="103353"/>
                    <exon start="103232" stop="103174"/>
                    <exon start="102693" stop="102540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQYTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKSNIVSPFAMHQQQLAMLAQQQSLLMAAAAAGGAVRLPVNAQQSTNGTNMVNQNWPNLGYQFPGVIMPAAGKTELEKYMQVGNMGPAHVVGNSVPIPASSFYSMGQNTSSNGIVPPGPSKQAATPISSSSTQSTKEFDFSSLTQGMFTKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109195" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103856" e_stop="103669"/>
            <exon e_start="103589" e_stop="103353"/>
            <exon e_start="103232" e_stop="102696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.992" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109195" e_stop="109009" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103856" e_stop="103669" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.787">
            <gDNA_intron_boundary i_start="103668" i_stop="103590" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103589" e_stop="103353" e_length="237"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="103232" e_stop="102696" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109195" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109187" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="107018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109171" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109166" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109135" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109119" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103353"/>
              <exon start="103232" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104469" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103589" stop="103456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103456" stop="103353"/>
              <exon start="103232" stop="102696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103456" stop="103353"/>
              <exon start="103232" stop="102696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103455" stop="103353"/>
              <exon start="103232" stop="102910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : TCCAATATTGTGTCACCTTTTGCTATGCATCAACAACAACTTGCTATGCTGGCGCAACAACAGTCTTTACTGATGGCTGCGGCTGCTGCAGGTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAGGTATTAACCTCTGATCGTTGTTAGTTAATGTAGAACTTCAACTGTTCTTTGAGGGCCTAATGTTTGGTCTATAAATTCAACAACTTAATCCAATGCATCTATCCTGCCAATTATTTGTCATTAAGATCTCTTAAATTATGACCCCTTAATGCTCAATGTAGTGTATCCATTAACTGTTTCTTCCATTTGATTTAAAGTATCCCTCCTCTTACTCCTCTTGTTAATAATGGGTTGCGGACAGACCCCATTGAACAGTATTTTTTTAATCCATAGCTACATCTCCGGAGGTATATGATCAATTTGCATTGACAAGCTCAGTTGCCAGTCATCTTTGACTTAGTTTAATACTGATGTAGGTTATTGAATCAGTTGAACAAATTTTGATAGTTGTGCTATCTATCGTATCCAGGAGGAACAAATTTTTGGGTGCTAGTTAATTTTTCATCTTTTGATGCTCATAGTTGATCTTTTGTTCTGC</gDNA_template>
            <first_frame> L  S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : V  Q  Y  C  V  T  F  C  Y  A  S  T  T  T  C  Y  A  G  A  T  T  V  F  T  D  G  C  G  C  C  R  W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  V  L  T  S  D  R  C  *  L  M  *  N  F  N  C  S  L  R  A  *  C  L  V  Y  K  F  N  N  L  I  Q  C  I  Y  P  A  N  Y  L  S  L  R  S  L  K  L  *  P  L  N  A  Q  C  S  V  S  I  N  C  F  F  H  L  I  *  S  I  P  P  L  T  P  L  V  N  N  G  L  R  T  D  P  I  E  Q  Y  F  F  N  P  *  L  H  L  R  R  Y  M  I  N  L  H  *  Q  A  Q  L  P  V  I  F  D  L  V  *  Y  *  C  R  L  L  N  Q  L  N  K  F  *  *  L  C  Y  L  S  Y  P  G  G  T  N  F  W  V  L  V  N  F  S  S  F  D  A  H  S  *  S  F  V  L  </first_frame>
            <second_frame>  F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  S  N  I  V  S  P  F  A  M  H  Q  Q  Q  L  A  M  L  A  Q  Q  Q  S  L  L  M  A  A  A  A  A  G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  R  Y  *  P  L  I  V  V  S  *  C  R  T  S  T  V  L  *  G  P  N  V  W  S  I  N  S  T  T  *  S  N  A  S  I  L  P  I  I  C  H  *  D  L  L  N  Y  D  P  L  M  L  N  V  V  Y  P  L  T  V  S  S  I  *  F  K  V  S  L  L  L  L  L  L  L  I  M  G  C  G  Q  T  P  L  N  S  I  F  L  I  H  S  Y  I  S  G  G  I  *  S  I  C  I  D  K  L  S  C  Q  S  S  L  T  *  F  N  T  D  V  G  Y  *  I  S  *  T  N  F  D  S  C  A  I  Y  R  I  Q  E  E  Q  I  F  G  C  *  L  I  F  H  L  L  M  L  I  V  D  L  L  F  C </second_frame>
            <third_frame>   F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  S :   P  I  L  C  H  L  L  L  C  I  N  N  N  L  L  C  W  R  N  N  S  L  Y  *  W  L  R  L  L  Q  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P  G  I  N  L  *  S  L  L  V  N  V  E  L  Q  L  F  F  E  G  L  M  F  G  L  *  I  Q  Q  L  N  P  M  H  L  S  C  Q  L  F  V  I  K  I  S  *  I  M  T  P  *  C  S  M  *  C  I  H  *  L  F  L  P  F  D  L  K  Y  P  S  S  Y  S  S  C  *  *  W  V  A  D  R  P  H  *  T  V  F  F  *  S  I  A  T  S  P  E  V  Y  D  Q  F  A  L  T  S  S  V  A  S  H  L  *  L  S  L  I  L  M  *  V  I  E  S  V  E  Q  I  L  I  V  V  L  S  I  V  S  R  R  N  K  F  L  G  A  S  *  F  F  I  F  *  C  S  *  L  I  F  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103856" stop="103669"/>
                    <exon start="103589" stop="103353"/>
                    <exon start="103232" stop="103167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKSNIVSPFAMHQQQLAMLAQQQSLLMAAAAAGGAVRLPVNAQQSTNGTNMVNQNWPNLGYQFPGVIMPAAGKTELEKYMQVGNMGPAHVVGNSVPIPASRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="109195" e_stop="109009"/>
            <exon e_start="107276" e_stop="107218"/>
            <exon e_start="107079" e_stop="106989"/>
            <exon e_start="105938" e_stop="105884"/>
            <exon e_start="105789" e_stop="105699"/>
            <exon e_start="105594" e_stop="105360"/>
            <exon e_start="104501" e_stop="104294"/>
            <exon e_start="103856" e_stop="103669"/>
            <exon e_start="103498" e_stop="103353"/>
            <exon e_start="103232" e_stop="103174"/>
            <exon e_start="102693" e_stop="102325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109195" e_stop="109009" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="109008" i_stop="107277" i_length="1732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107276" e_stop="107218" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.217" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107217" i_stop="107080" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107079" e_stop="106989" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106988" i_stop="105939" i_length="1050"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105938" e_stop="105884" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105883" i_stop="105790" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105699" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.970">
            <gDNA_intron_boundary i_start="105698" i_stop="105595" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105594" e_stop="105360" e_length="235"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105359" i_stop="104502" i_length="858"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104501" e_stop="104294" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.663" acc_prob="0.996">
            <gDNA_intron_boundary i_start="104293" i_stop="103857" i_length="437"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103856" e_stop="103669" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103668" i_stop="103499" i_length="170"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103498" e_stop="103353" e_length="146"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103352" i_stop="103233" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103232" e_stop="103174" e_length="59"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="102694" i_length="480"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102693" e_stop="102325" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109195" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109187" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105360"/>
              <exon start="104501" stop="104306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109182" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109177" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="107018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109171" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109166" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109135" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109119" stop="109009"/>
              <exon start="107276" stop="107218"/>
              <exon start="107079" stop="106989"/>
              <exon start="105938" stop="105884"/>
              <exon start="105789" stop="105699"/>
              <exon start="105594" stop="105429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104464" stop="104294"/>
              <exon start="103856" stop="103669"/>
              <exon start="103498" stop="103353"/>
              <exon start="103232" stop="103199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103473" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103419" stop="103353"/>
              <exon start="103232" stop="103174"/>
              <exon start="102693" stop="102344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281069" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCATCCAGTTGCATTTTTCTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGATTTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCTTGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATGCGAAGCATAGAAAG : ATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGGGAATGTGCAGATTGCAAAGCCAA : GGGTCCTAGATGGGCAAGCGTGAACCTGGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGGTGCACATATCAAAG : GTCAGATCAGCTACACTAGACACATGGCTTCCTGAACAAGTTGCATTTATCCATT : CAATGGGAAATGAGAGGTCAAATAGTTTTTGGGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCATCCGAGCAAA : ATATGAAGAGAAGAGGTGGGTCCCTAAGGATGGGATTCAAAAATCACCTTCCAGGGTTCAAGAAGAGAGGGCTTCGGTGCAATGGCAACAAAACAATGATAGAAGTGGGCGTATACATGCAGCTAGCTCAGGATGTGCATCTGACGAGAGGAAAAATATTCAAGCCTCGAAAGTGAAGCAAGATGTACCTGCTGCTAGAGTCAGTATACCAGTGCCTCCTAGAGGACCAGAGCAT : GTAACTTCAGGTCAGGTTGCTAACCAGACAAGTCAGAAAGCAGAGCCAGTTGCAGTCACTGAACCAGCTAAGCAGGTTCCGGAAGCTGCCAGTCCTCCTAAAGTTGATTATGCTACTGATCTATTTGACATGCTTTCTATGGATTGTCCAACTGACAATGGCTCAGAAGCAGCTTCTACCGATGATAACTCCTGGGCAGGCTTCCAGT : CTGCTCAAGAAGCAACAAAAGCAGAAAATACTGGGGTTACAAACTCCGTTGATCAGAAGAAGTCTCAATCTGCTGCTGCTTCTGGAATTGAAGATTTATTCAAGGATTTACCATCAATTGTGCCTTCTGCCTCATCGCAGAAGCCACAGAAAGATGCTAAAAACGATATAATGAGCCTTTTCGACAAG : GTGGTGCTGTAAGACTTCCTGTAAATGCACAACAAAGCACTAATGGCACCAATATGGTAAATCAGAACTGGCCAAATTTAGGCTATCAGTTCCCTGGAGTGATAATGCCAGCAGCTGGTAAGACTGAGCTGGAGAAATATATGCAG : GTAGGCAATATGGGACCAGCACATGTAGTTGGAAACTCTGTGCCAATTCCAGCATCCAG : CTTCTACTCAATGGGACAGAACACTTCCAGCAACGGTATTGTGCCGCCAGGACCAAGCAAGCAAGCAGCTACCCCGATATCATCAAGCTCCACACAGTCAACAAAAGAATTCGACTTTTCATCCTTGACACAGGGTATGTTCACAAAACGCTGAAAAACCAACAAGGAAGCATACTAGCTATTAGTATACAAATTGTTTTTTTTTCCCACAGGAAATTAGCTTTTGTTGTTCTACTCCTGTTTTGGAGATTGTAAACTAAATGTAGAGGACCAAATATTGAGTTTTCTTTAAGGTGATGGCTTGATTTGTATTTTTGTATCTGGAAAAATAAGCTCTCAAAGATTGGATGGTATTCGATTCTTTTCCTA</gDNA_template>
            <first_frame> L  S  H  P  V  A  F  F  F  *  *  I  F  T  R  R  R  G  E  E  S  D  R  R  F  L  F  S  D  S  F  S  L  R  R  L  I  R  L  N  P  C  Y  R  H  H  E  *  E  G  *  C  Y  *  R  A  *  C  E  A  *  K   : D  T  R  R  T  S  *  V  A  R  E  Q  G  M  C  R  L  Q  S  Q  :  G  S  *  M  G  K  R  E  P  G  N  I  Y  M  H  A  M  L  W  D  P  Q  K  P  G  G  A  H  I  K   : G  Q  I  S  Y  T  R  H  M  A  S  *  T  S  C  I  Y  P  F :   N  G  K  *  E  V  K  *  F  L  G  S  R  A  A  S  K  L  *  *  S  W  Y  *  E  F  H  P  S  K  :  I  *  R  E  E  V  G  P  *  G  W  D  S  K  I  T  F  Q  G  S  R  R  E  G  F  G  A  M  A  T  K  Q  *  *  K  W  A  Y  T  C  S  *  L  R  M  C  I  *  R  E  E  K  Y  S  S  L  E  S  E  A  R  C  T  C  C  *  S  Q  Y  T  S  A  S  *  R  T  R  A   : C  N  F  R  S  G  C  *  P  D  K  S  E  S  R  A  S  C  S  H  *  T  S  *  A  G  S  G  S  C  Q  S  S  *  S  *  L  C  Y  *  S  I  *  H  A  F  Y  G  L  S  N  *  Q  W  L  R  S  S  F  Y  R  *  *  L  L  G  R  L  P  V :   C  S  R  S  N  K  S  R  K  Y  W  G  Y  K  L  R  *  S  E  E  V  S  I  C  C  C  F  W  N  *  R  F  I  Q  G  F  T  I  N  C  A  F  C  L  I  A  E  A  T  E  R  C  *  K  R  Y  N  E  P  F  R  Q   : G  G  A  V  R  L  P  V  N  A  Q  Q  S  T  N  G  T  N  M  V  N  Q  N  W  P  N  L  G  Y  Q  F  P  G  V  I  M  P  A  A  G  K  T  E  L  E  K  Y  M  Q  :  V  G  N  M  G  P  A  H  V  V  G  N  S  V  P  I  P  A  S  S :   F  Y  S  M  G  Q  N  T  S  S  N  G  I  V  P  P  G  P  S  K  Q  A  A  T  P  I  S  S  S  S  T  Q  S  T  K  E  F  D  F  S  S  L  T  Q  G  M  F  T  K  R  *  K  T  N  K  E  A  Y  *  L  L  V  Y  K  L  F  F  F  P  T  G  N  *  L  L  L  F  Y  S  C  F  G  D  C  K  L  N  V  E  D  Q  I  L  S  F  L  *  G  D  G  L  I  C  I  F  V  S  G  K  I  S  S  Q  R  L  D  G  I  R  F  F  S   </first_frame>
            <second_frame>  F  L  I  Q  L  H  F  S  F  D  R  Y  L  R  V  G  E  G  R  N  Q  I  G  D  F  Y  F  P  I  A  S  L  S  V  G  *  F  A  *  T  L  A  I  V  I  M  N  E  K  A  N  V  T  K  E  L  N  A  K  H  R  K  :  I  L  E  G  L  L  K  L  P  E  N  R  E  C  A  D  C  K  A  K :   G  P  R  W  A  S  V  N  L  G  I  F  I  C  M  Q  C  S  G  I  H  R  S  L  G  V  H  I  S  K  :  V  R  S  A  T  L  D  T  W  L  P  E  Q  V  A  F  I  H   : S  M  G  N  E  R  S  N  S  F  W  E  A  E  L  P  P  N  Y  D  R  V  G  I  E  N  F  I  R  A  K :   Y  E  E  K  R  W  V  P  K  D  G  I  Q  K  S  P  S  R  V  Q  E  E  R  A  S  V  Q  W  Q  Q  N  N  D  R  S  G  R  I  H  A  A  S  S  G  C  A  S  D  E  R  K  N  I  Q  A  S  K  V  K  Q  D  V  P  A  A  R  V  S  I  P  V  P  P  R  G  P  E  H  :  V  T  S  G  Q  V  A  N  Q  T  S  Q  K  A  E  P  V  A  V  T  E  P  A  K  Q  V  P  E  A  A  S  P  P  K  V  D  Y  A  T  D  L  F  D  M  L  S  M  D  C  P  T  D  N  G  S  E  A  A  S  T  D  D  N  S  W  A  G  F  Q   : S  A  Q  E  A  T  K  A  E  N  T  G  V  T  N  S  V  D  Q  K  K  S  Q  S  A  A  A  S  G  I  E  D  L  F  K  D  L  P  S  I  V  P  S  A  S  S  Q  K  P  Q  K  D  A  K  N  D  I  M  S  L  F  D  K  :  V  V  L  *  D  F  L  *  M  H  N  K  A  L  M  A  P  I  W  *  I  R  T  G  Q  I  *  A  I  S  S  L  E  *  *  C  Q  Q  L  V  R  L  S  W  R  N  I  C  R :   *  A  I  W  D  Q  H  M  *  L  E  T  L  C  Q  F  Q  H  P   : A  S  T  Q  W  D  R  T  L  P  A  T  V  L  C  R  Q  D  Q  A  S  K  Q  L  P  R  Y  H  Q  A  P  H  S  Q  Q  K  N  S  T  F  H  P  *  H  R  V  C  S  Q  N  A  E  K  P  T  R  K  H  T  S  Y  *  Y  T  N  C  F  F  F  P  Q  E  I  S  F  C  C  S  T  P  V  L  E  I  V  N  *  M  *  R  T  K  Y  *  V  F  F  K  V  M  A  *  F  V  F  L  Y  L  E  K  *  A  L  K  D  W  M  V  F  D  S  F  P  </second_frame>
            <third_frame>   F  S  S  S  C  I  F  L  L  I  D  I  Y  A  S  E  R  G  G  I  R  S  A  I  F  I  F  R  *  L  L  S  P  S  V  N  S  L  K  P  L  L  S  S  S  *  M  R  R  L  M  L  L  K  S  L  M  R  S  I  E  R :   Y  *  K  D  F  L  S  C  P  R  T  G  N  V  Q  I  A  K  P   : R  V  L  D  G  Q  A  *  T  W  E  Y  L  Y  A  C  N  A  L  G  S  T  E  A  W  G  C  T  Y  Q  R :   S  D  Q  L  H  *  T  H  G  F  L  N  K  L  H  L  S  I  :  Q  W  E  M  R  G  Q  I  V  F  G  K  Q  S  C  L  Q  I  M  I  E  L  V  L  R  I  S  S  E  Q   : N  M  K  R  R  G  G  S  L  R  M  G  F  K  N  H  L  P  G  F  K  K  R  G  L  R  C  N  G  N  K  T  M  I  E  V  G  V  Y  M  Q  L  A  Q  D  V  H  L  T  R  G  K  I  F  K  P  R  K  *  S  K  M  Y  L  L  L  E  S  V  Y  Q  C  L  L  E  D  Q  S  M :   *  L  Q  V  R  L  L  T  R  Q  V  R  K  Q  S  Q  L  Q  S  L  N  Q  L  S  R  F  R  K  L  P  V  L  L  K  L  I  M  L  L  I  Y  L  T  C  F  L  W  I  V  Q  L  T  M  A  Q  K  Q  L  L  P  M  I  T  P  G  Q  A  S  S  :  L  L  K  K  Q  Q  K  Q  K  I  L  G  L  Q  T  P  L  I  R  R  S  L  N  L  L  L  L  L  E  L  K  I  Y  S  R  I  Y  H  Q  L  C  L  L  P  H  R  R  S  H  R  K  M  L  K  T  I  *  *  A  F  S  T  R :   W  C  C  K  T  S  C  K  C  T  T  K  H  *  W  H  Q  Y  G  K  S  E  L  A  K  F  R  L  S  V  P  W  S  D  N  A  S  S  W  *  D  *  A  G  E  I  Y  A   : G  R  Q  Y  G  T  S  T  C  S  W  K  L  C  A  N  S  S  I  Q  :  L  L  L  N  G  T  E  H  F  Q  Q  R  Y  C  A  A  R  T  K  Q  A  S  S  Y  P  D  I  I  K  L  H  T  V  N  K  R  I  R  L  F  I  L  D  T  G  Y  V  H  K  T  L  K  N  Q  Q  G  S  I  L  A  I  S  I  Q  I  V  F  F  S  H  R  K  L  A  F  V  V  L  L  L  F  W  R  L  *  T  K  C  R  G  P  N  I  E  F  S  L  R  *  W  L  D  L  Y  F  C  I  W  K  N  K  L  S  K  I  G  W  Y  S  I  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109077" stop="109009"/>
                    <exon start="107276" stop="107218"/>
                    <exon start="107079" stop="106989"/>
                    <exon start="105938" stop="105884"/>
                    <exon start="105789" stop="105699"/>
                    <exon start="105594" stop="105360"/>
                    <exon start="104501" stop="104294"/>
                    <exon start="103856" stop="103669"/>
                    <exon start="103498" stop="103487"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAIVIMNEKANVTKELNAKHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNERSNSFWEAELPPNYDRVGIENFIRAKYEEKRWVPKDGIQKSPSRVQEERASVQWQQNNDRSGRIHAASSGCASDERKNIQASKVKQDVPAARVSIPVPPRGPEHVTSGQVANQTSQKAEPVAVTEPAKQVPEAASPPKVDYATDLFDMLSMDCPTDNGSEAASTDDNSWAGFQSAQEATKAENTGVTNSVDQKKSQSAAASGIEDLFKDLPSIVPSASSQKPQKDAKNDIMSLFDKVVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103371" stop="103353"/>
                    <exon start="103232" stop="103174"/>
                    <exon start="102693" stop="102439"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGEIYAGRQYGTSTCSWKLCANSSIQLLLNGTEHFQQRYCAARTKQASSYPDIIKLHTVNKRIRLFILDTGYVHKTLKNQQGSILAISIQIVFFSHRKLAFVVLLLFWRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="109929" PGL_stop="112862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109929" e_stop="110052"/>
            <exon e_start="110963" e_stop="111033"/>
            <exon e_start="111794" e_stop="111883"/>
            <exon e_start="112268" e_stop="112862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109929" e_stop="110052" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110053" i_stop="110962" i_length="910"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110963" e_stop="111033" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111034" i_stop="111793" i_length="760"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111794" e_stop="111883" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.966">
            <gDNA_intron_boundary i_start="111884" i_stop="112267" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112268" e_stop="112862" e_length="595"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109929" stop="110052"/>
              <exon start="110963" stop="111033"/>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109930" stop="110052"/>
              <exon start="110963" stop="111033"/>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109930" stop="110052"/>
              <exon start="110963" stop="111033"/>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111794" stop="111883"/>
              <exon start="112268" stop="112852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112448" stop="112852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGGCGTGGACGGCGGCGGCGAGGCAAGCAGCGAACCTATATCGATTCTCAGCTTCTAAATCAGTTAGCTCAACGAAGCAAGGCGCTTTACTTATCCAGCGGCGCGGCCTTGCCGGCGGTGGTG : ATCATCATGGACCTCCAAAGGTGAATTTTTGGCAGGATCCGATGAGTCCGTCTAAATGGAAAGAAGAGCAT : TTTGTGATCGTCTCTCTTACTGGTTGGGGGTTGGCCTTCTATGGAGGTTATAAGCTCTTCACAAAGGGAAAGAAAGAGGAGAAGGAAGAG : AAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCTTGAATAAAGAAGTTAGAAAGGGCTATGTGGTCCTCAATTTTTGCCATGATGAATATTACAATGACTTTTCCCCCATTTCCTCCACTTCCCTTGTTGGGACTGAATTGCATATGAAATACTGGACAATCAACTATGTAATTTCTTTTTTTGCTTTCTGTAGAATGTTGGTTCATTTAGGAACATTTTGCCTGCTGAGGATATGATGTTTCTTCTTGTTGGAACAACTTTCGCTACCCATTTGCATAATGATCATGAGTATGTTGAAGAAACCACAGTTTTCTTTATGTGTCGTTCTAACCCATTTGAATGTCTATGTCTGGGTTGATGGAGCTCAATGAGTCAGATGCAGCAAGCTCATTAGCTTCGTCAAGCTGTTTCTATCTGTTGTGCTTTTGGTCATTTGGTGCCTCTTTCCATGTATGTTAAGACTATGGGAGATGGTAAAAGATTACCTATTTATACAATTCTAGCTATTGAAGGCAGGAAACTGAATGTAATAAGTTGATAGAAACATGTAACATTTTAAGTTATGGTTTTTACACAACATTAA</gDNA_template>
            <first_frame> A  A  W  T  A  A  A  R  Q  A  A  N  L  Y  R  F  S  A  S  K  S  V  S  S  T  K  Q  G  A  L  L  I  Q  R  R  G  L  A  G  G  G   : D  H  H  G  P  P  K  V  N  F  W  Q  D  P  M  S  P  S  K  W  K  E  E  H  :  F  V  I  V  S  L  T  G  W  G  L  A  F  Y  G  G  Y  K  L  F  T  K  G  K  K  E  E  K  E  E  :  K  V  G  E  G  S  H  *  Y  L  T  C  R  M  P  *  I  K  K  L  E  R  A  M  W  S  S  I  F  A  M  M  N  I  T  M  T  F  P  P  F  P  P  L  P  L  L  G  L  N  C  I  *  N  T  G  Q  S  T  M  *  F  L  F  L  L  S  V  E  C  W  F  I  *  E  H  F  A  C  *  G  Y  D  V  S  S  C  W  N  N  F  R  Y  P  F  A  *  *  S  *  V  C  *  R  N  H  S  F  L  Y  V  S  F  *  P  I  *  M  S  M  S  G  L  M  E  L  N  E  S  D  A  A  S  S  L  A  S  S  S  C  F  Y  L  L  C  F  W  S  F  G  A  S  F  H  V  C  *  D  Y  G  R  W  *  K  I  T  Y  L  Y  N  S  S  Y  *  R  Q  E  T  E  C  N  K  L  I  E  T  C  N  I  L  S  Y  G  F  Y  T  T  L  </first_frame>
            <second_frame>  R  R  G  R  R  R  R  G  K  Q  R  T  Y  I  D  S  Q  L  L  N  Q  L  A  Q  R  S  K  A  L  Y  L  S  S  G  A  A  L  P  A  V  V  :  I  I  M  D  L  Q  R  *  I  F  G  R  I  R  *  V  R  L  N  G  K  K  S  I :   L  *  S  S  L  L  L  V  G  G  W  P  S  M  E  V  I  S  S  S  Q  R  E  R  K  R  R  R  K  R :   K  L  V  K  D  P  T  N  I  *  R  A  E  C  L  E  *  R  S  *  K  G  L  C  G  P  Q  F  L  P  *  *  I  L  Q  *  L  F  P  H  F  L  H  F  P  C  W  D  *  I  A  Y  E  I  L  D  N  Q  L  C  N  F  F  F  C  F  L  *  N  V  G  S  F  R  N  I  L  P  A  E  D  M  M  F  L  L  V  G  T  T  F  A  T  H  L  H  N  D  H  E  Y  V  E  E  T  T  V  F  F  M  C  R  S  N  P  F  E  C  L  C  L  G  *  W  S  S  M  S  Q  M  Q  Q  A  H  *  L  R  Q  A  V  S  I  C  C  A  F  G  H  L  V  P  L  S  M  Y  V  K  T  M  G  D  G  K  R  L  P  I  Y  T  I  L  A  I  E  G  R  K  L  N  V  I  S  *  *  K  H  V  T  F  *  V  M  V  F  T  Q  H  * </second_frame>
            <third_frame>   G  V  D  G  G  G  E  A  S  S  E  P  I  S  I  L  S  F  *  I  S  *  L  N  E  A  R  R  F  T  Y  P  A  A  R  P  C  R  R  W  * :   S  S  W  T  S  K  G  E  F  L  A  G  S  D  E  S  V  *  M  E  R  R  A   : F  C  D  R  L  S  Y  W  L  G  V  G  L  L  W  R  L  *  A  L  H  K  G  K  E  R  G  E  G  R   : E  S  W  *  R  I  P  L  I  F  D  V  P  N  A  L  N  K  E  V  R  K  G  Y  V  V  L  N  F  C  H  D  E  Y  Y  N  D  F  S  P  I  S  S  T  S  L  V  G  T  E  L  H  M  K  Y  W  T  I  N  Y  V  I  S  F  F  A  F  C  R  M  L  V  H  L  G  T  F  C  L  L  R  I  *  C  F  F  L  L  E  Q  L  S  L  P  I  C  I  M  I  M  S  M  L  K  K  P  Q  F  S  L  C  V  V  L  T  H  L  N  V  Y  V  W  V  D  G  A  Q  *  V  R  C  S  K  L  I  S  F  V  K  L  F  L  S  V  V  L  L  V  I  W  C  L  F  P  C  M  L  R  L  W  E  M  V  K  D  Y  L  F  I  Q  F  *  L  L  K  A  G  N  *  M  *  *  V  D  R  N  M  *  H  F  K  L  W  F  L  H  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109929" stop="110052"/>
                    <exon start="110963" stop="111033"/>
                    <exon start="111794" stop="111883"/>
                    <exon start="112268" stop="112291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAWTAAARQAANLYRFSASKSVSSTKQGALLIQRRGLAGGGDHHGPPKVNFWQDPMSPSKWKEEHFVIVSLTGWGLAFYGGYKLFTKGKKEEKEEKVGEGSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112279" stop="112515"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPLIFDVPNALNKEVRKGYVVLNFCHDEYYNDFSPISSTSLVGTELHMKYWTINYVISFFAFCRMLVHLGTFCLLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="115307" PGL_stop="112933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115307" e_stop="115305"/>
            <exon e_start="115254" e_stop="115199"/>
            <exon e_start="114547" e_stop="114449"/>
            <exon e_start="113899" e_stop="113810"/>
            <exon e_start="113331" e_stop="112933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.839" e_score="0.667"/>
          <exon-intron don_prob="0.966" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="115307" e_stop="115305" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.839">
            <gDNA_intron_boundary i_start="115304" i_stop="115255" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115254" e_stop="115199" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115198" i_stop="114548" i_length="651"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="114547" e_stop="114449" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114448" i_stop="113900" i_length="549"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113899" e_stop="113810" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113809" i_stop="113332" i_length="478"/>
          </intron>
          <exon e_serial="5" e_score="0.900">
            <gDNA_exon_boundary e_start="113331" e_stop="112933" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115307" stop="115305"/>
              <exon start="115254" stop="115199"/>
              <exon start="114547" stop="114449"/>
              <exon start="113899" stop="113810"/>
              <exon start="113331" stop="112933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGG : GTCTACTTTAAATGATGAGGTTCAGCTTTGCCCTTTCTGTACTCAGCCATTCTCAG : TTGTTGGCAATAAGTTCGTGAGAGACCCAGTAACGTTCTCCAACCAGTCAACTACATTTGGTCAAGCATTTGGTGATTTCAGTACTCGTTCTAAGAAAG : GTAAGAATTCCTCTGTCGGAATTGTTGATATAGAAGCAGAAGTTAAGGACGCGGACTAGGCAGTGGTCTCCAGTCATACAGTAGCATATG : GGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGATGTATGCACACCTTATCCTCGCTTTCCTA</gDNA_template>
            <first_frame> G  :  V  Y  F  K  *  *  G  S  A  L  P  F  L  Y  S  A  I  L  S :   C  W  Q  *  V  R  E  R  P  S  N  V  L  Q  P  V  N  Y  I  W  S  S  I  W  *  F  Q  Y  S  F  *  E  R :   *  E  F  L  C  R  N  C  *  Y  R  S  R  S  *  G  R  G  L  G  S  G  L  Q  S  Y  S  S  I  W :   D  Y  E  K  Q  Q  Q  Q  L  N  G  K  K  T  R  T  Y  H  V  S  M  K  R  S  F  S  Q  A  L  C  C  Y  E  I  L  K  N  T  T  F  S  I  G  Y  H  A  *  L  Y  S  R  E  H  I  I  N  I  L  *  S  I  A  D  Y  V  R  K  K  C  *  L  Q  L  P  H  S  I  P  *  H  W  I  S  L  S  C  L  *  K  Y  F  L  A  S  H  L  L  I  V  L  *  C  S  K  Q  *  H  T  P  C  N  L  *  F  Y  K  W  D  L  *  R  L  G  C  M  H  T  L  S  S  L  S   </first_frame>
            <second_frame>  G :   S  T  L  N  D  E  V  Q  L  C  P  F  C  T  Q  P  F  S   : V  V  G  N  K  F  V  R  D  P  V  T  F  S  N  Q  S  T  T  F  G  Q  A  F  G  D  F  S  T  R  S  K  K   : G  K  N  S  S  V  G  I  V  D  I  E  A  E  V  K  D  A  D  *  A  V  V  S  S  H  T  V  A  Y   : G  I  M  R  S  S  S  S  S  *  T  G  R  R  Q  E  H  T  M  S  V  *  R  E  A  S  H  K  H  C  A  V  M  K  Y  *  R  T  P  R  L  A  *  V  I  M  H  D  C  T  V  A  N  T  *  S  T  Y  Y  R  V  L  L  I  M  L  E  K  S  V  D  C  S  C  P  I  V  Y  H  S  I  G  *  A  Y  H  V  C  E  N  T  F  *  L  L  I  C  *  L  Y  Y  D  V  V  N  N  N  I  P  R  V  I  C  S  S  T  S  G  I  F  E  G  W  D  V  C  T  P  Y  P  R  F  P  </second_frame>
            <third_frame>    : G  L  L  *  M  M  R  F  S  F  A  L  S  V  L  S  H  S  Q  :  L  L  A  I  S  S  *  E  T  Q  *  R  S  P  T  S  Q  L  H  L  V  K  H  L  V  I  S  V  L  V  L  R  K  :  V  R  I  P  L  S  E  L  L  I  *  K  Q  K  L  R  T  R  T  R  Q  W  S  P  V  I  Q  *  H  M  :  G  L  *  E  A  A  A  A  A  E  R  E  E  D  K  N  I  P  C  Q  Y  E  E  K  L  L  T  S  T  V  L  L  *  N  T  K  E  H  H  V  *  H  R  L  S  C  M  T  V  Q  S  R  T  H  N  Q  H  I  I  E  Y  C  *  L  C  *  K  K  V  L  I  A  V  A  P  *  Y  T  I  A  L  D  K  L  I  M  F  V  K  I  L  S  S  F  S  S  V  D  C  I  M  M  *  *  T  I  T  Y  P  V  *  F  V  V  L  Q  V  G  S  L  K  V  G  M  Y  A  H  L  I  L  A  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115306" stop="115305"/>
                    <exon start="115254" stop="115199"/>
                    <exon start="114547" stop="114449"/>
                    <exon start="113899" stop="113841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSTLNDEVQLCPFCTQPFSVVGNKFVRDPVTFSNQSTTFGQAFGDFSTRSKKGKNSSVGIVDIEAEVKDAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113526" e_stop="112961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113526" e_stop="112961" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113526" stop="112961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314906" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTATAGTTGTTATCGTTGGCTTCTGGTATGACATAATTTGCTGTATATAATTGATTTGAACGTAGACATTATACAGCTTCCCAAGATAACAACATGGATGTTGATTTGTTCTTTTAGCAGTCCTTTGTTGGTCTTGTCCTATTATGTATGAGGCTGCTTCTTTTTCTTCTTTCATAAAAATCATCATCTAGGGATTATGAGAAGCAGCAGCAGCAGCTGAACGGGAAGAAGACAAGAACATACCATGTCAGTATGAAGAGAAGCTTCTCACAAGCACTGTGCTGTTATGAAATACTAAAGAACACCACGTTTAGCATAGGTTATCATGCATGACTGTACAGTCGCGAACACATAATCAACATATTATAGAGTATTGCTGATTATGTTAGAAAAAAGTGTTGATTGCAGTTGCCCCATAGTATACCATAGCATTGGATAAGCTTATCATGTTTGTGAAAATACTTTCTAGCTTCTCATCTGTTGATTGTATTATGATGTAGTAAACAATAACATACCCCGTGTAATTTGTAGTTCTACAAGTGGGATCTTTGAAGGTTGGGAT</gDNA_template>
            <first_frame> Y  T  I  V  V  I  V  G  F  W  Y  D  I  I  C  C  I  *  L  I  *  T  *  T  L  Y  S  F  P  R  *  Q  H  G  C  *  F  V  L  L  A  V  L  C  W  S  C  P  I  M  Y  E  A  A  S  F  S  S  F  I  K  I  I  I  *  G  L  *  E  A  A  A  A  A  E  R  E  E  D  K  N  I  P  C  Q  Y  E  E  K  L  L  T  S  T  V  L  L  *  N  T  K  E  H  H  V  *  H  R  L  S  C  M  T  V  Q  S  R  T  H  N  Q  H  I  I  E  Y  C  *  L  C  *  K  K  V  L  I  A  V  A  P  *  Y  T  I  A  L  D  K  L  I  M  F  V  K  I  L  S  S  F  S  S  V  D  C  I  M  M  *  *  T  I  T  Y  P  V  *  F  V  V  L  Q  V  G  S  L  K  V  G   </first_frame>
            <second_frame>  I  L  *  L  L  S  L  A  S  G  M  T  *  F  A  V  Y  N  *  F  E  R  R  H  Y  T  A  S  Q  D  N  N  M  D  V  D  L  F  F  *  Q  S  F  V  G  L  V  L  L  C  M  R  L  L  L  F  L  L  S  *  K  S  S  S  R  D  Y  E  K  Q  Q  Q  Q  L  N  G  K  K  T  R  T  Y  H  V  S  M  K  R  S  F  S  Q  A  L  C  C  Y  E  I  L  K  N  T  T  F  S  I  G  Y  H  A  *  L  Y  S  R  E  H  I  I  N  I  L  *  S  I  A  D  Y  V  R  K  K  C  *  L  Q  L  P  H  S  I  P  *  H  W  I  S  L  S  C  L  *  K  Y  F  L  A  S  H  L  L  I  V  L  *  C  S  K  Q  *  H  T  P  C  N  L  *  F  Y  K  W  D  L  *  R  L  G  </second_frame>
            <third_frame>   Y  Y  S  C  Y  R  W  L  L  V  *  H  N  L  L  Y  I  I  D  L  N  V  D  I  I  Q  L  P  K  I  T  T  W  M  L  I  C  S  F  S  S  P  L  L  V  L  S  Y  Y  V  *  G  C  F  F  F  F  F  H  K  N  H  H  L  G  I  M  R  S  S  S  S  S  *  T  G  R  R  Q  E  H  T  M  S  V  *  R  E  A  S  H  K  H  C  A  V  M  K  Y  *  R  T  P  R  L  A  *  V  I  M  H  D  C  T  V  A  N  T  *  S  T  Y  Y  R  V  L  L  I  M  L  E  K  S  V  D  C  S  C  P  I  V  Y  H  S  I  G  *  A  Y  H  V  C  E  N  T  F  *  L  L  I  C  *  L  Y  Y  D  V  V  N  N  N  I  P  R  V  I  C  S  S  T  S  G  I  F  E  G  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0140O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="122290" PGL_stop="118691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122290" e_stop="122226"/>
            <exon e_start="120841" e_stop="120545"/>
            <exon e_start="120442" e_stop="120320"/>
            <exon e_start="119909" e_stop="119619"/>
            <exon e_start="119122" e_stop="118691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.530" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122290" e_stop="122226" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.863">
            <gDNA_intron_boundary i_start="122225" i_stop="120842" i_length="1384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120841" e_stop="120545" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.530" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120442" e_stop="120320" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.758">
            <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119909" e_stop="119619" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="119122" e_stop="118691" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122290" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="119056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122274" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="119025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122245" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="118691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122244" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122243" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="119046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122243" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="119060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122243" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122242" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122242" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122242" stop="122226"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120649" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120394" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="118845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119908" stop="119619"/>
              <exon start="119122" stop="118705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119908" stop="119619"/>
              <exon start="119122" stop="118776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119881" stop="119619"/>
              <exon start="119122" stop="118700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119798" stop="119619"/>
              <exon start="119122" stop="118786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTATTCACAAGAATCCCAACAATTTGTTCATTGCATTTGACGCCCATTTCTAGAGACTTT : GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT : GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG : CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG : GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAACAGAGAAGCA</gDNA_template>
            <first_frame> E  Y  Y  S  Q  E  S  Q  Q  F  V  H  C  I  *  R  P  F  L  E  T  L :   F  D  F  G  F  L  V  G  *  Q  Q  I  W  N  W  I  W  I  V  G  K  S  H  *  *  H  P  V  Y  V  L  C  *  L  Y  I  S  A  Y  S  *  *  Q  N  I  L  R  H  G  R  S  L  K  S  K  R  P  *  L  L  S  S  S  W  H  L  C  M  L  L  S  P  S  L  G  W  S  I  S  W  E  A  N  P  F  S  L  S  W  N  L  S  K  N  V  M  K  Q  L :   *  W  L  S  S  W  G  *  C  T  L  T  *  I  Y  P  *  A  K  T  *  S  L  M  K  L  R  E  D  R  F  T  T  H  S  Q  *  H  S  S  S :   L  T  L  L  I  *  T  I  I  H  *  S  F  S  R  T  G  H  G  S  L  L  *  F  A  L  Y  A  L  F  *  *  L  F  Y  K  C  L  E  C  T  L  V  G  L  A  G  P  L  P  S  F  *  T  Y  P  F  H  W  H  C  T  L  L  W  F  S  T  T  C  L  R  R  S  W  R  L  T  S  H  *  P  S  S  C  V  S  K  E  L  S  F  S  S  S  G  R :   A  F  C  L  V  F  W  Y  H  *  A  *  *  N  L  T  I  S  G  L  R  W  S  A  F  R  K  V  C  R  M  N  *  *  S  W  R  W  F  S  S  L  S  L  C  V  M  H  T  V  Q  R  H  I  A  Q  K  L  L  Q  L  L  Q  K  M  L  L  L  E  I  K  R  M  S  D  Y  A  T  C  I  V  V  K  K  L  S  S  D  I  T  H  F  L  I  L  L  V  C  Y  V  G  F  A  C  *  C  Y  N  R  F  L  L  Q  I  N  *  N  I  L  *  V  L  I  S  T  E  S  L  S  F  *  G  N  E  Y  F  I  *  N  K  T  E  K   </first_frame>
            <second_frame>  N  I  I  H  K  N  P  N  N  L  F  I  A  F  D  A  H  F  *  R  L   : C  L  I  L  V  F  L  L  A  N  N  K  Y  G  I  G  S  G  S  W  A  S  H  T  D  S  I  Q  Y  M  S  Y  A  D  F  T  F  Q  H  T  A  S  D  R  T  F  Y  V  M  E  E  A  *  R  A  K  G  H  N  Y  Y  R  P  H  G  T  F  V  C  Y  C  L  L  H  W  V  G  R  F  H  G  K  Q  T  L  F  H  F  L  G  I  C  Q  R  M  L  *  S  N   : C  D  G  *  V  P  G  V  D  V  H  L  L  E  Y  I  H  K  Q  K  H  S  P  *  *  N  *  G  K  T  D  S  P  L  I  P  N  D  T  L  P   : A  S  H  C  S  F  E  P  S  Y  I  E  A  S  Q  E  L  D  M  A  V  C  C  D  S  P  C  M  L  Y  F  N  D  C  F  T  N  V  W  S  V  P  *  L  G  *  L  D  L  Y  H  H  F  K  H  I  R  F  T  G  I  V  L  S  C  G  F  L  P  R  V  C  E  G  V  G  A  S  Q  A  T  S  Q  V  P  V  C  Q  R  N  C  L  F  R  L  L  A   : G  H  S  A  *  C  S  G  I  T  R  H  N  K  I  S  L  F  L  A  *  G  G  A  P  S  G  R  Y  A  E  *  T  S  D  P  G  D  G  F  L  R  Y  P  Y  A  S  C  I  Q  C  S  A  I  S  R  R  S  C  Y  N  Y  F  R  R  C  Y  F  W  R  *  K  E  *  V  I  M  Q  H  V  L  L  *  K  N  Y  L  Q  T  S  L  T  S  S  Y  C  L  Y  V  M  L  D  L  L  V  D  V  I  I  D  S  Y  Y  R  S  T  R  T  F  C  E  C  *  L  A  L  N  P  F  H  S  E  A  M  N  T  S  F  E  I  K  Q  R  S  </second_frame>
            <third_frame>   I  L  F  T  R  I  P  T  I  C  S  L  H  L  T  P  I  S  R  D  F  :  V  *  F  W  F  S  C  W  L  T  T  N  M  E  L  D  L  D  R  G  Q  V  T  L  I  A  S  S  I  C  L  M  L  T  L  H  F  S  I  Q  L  V  T  E  H  F  T  S  W  K  K  P  K  E  Q  K  A  I  I  I  I  V  L  M  A  P  L  Y  A  I  V  S  F  I  G  L  V  D  F  M  G  S  K  P  F  F  T  F  L  E  S  V  K  E  C  Y  E  A  I  :  V  M  A  K  F  L  G  L  M  Y  T  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  Q  I  H  H  S  F  P  M  T  L  F  Q  :  P  H  T  A  H  L  N  H  H  T  L  K  L  L  K  N  W  T  W  Q  F  V  V  I  R  P  V  C  S  I  L  M  I  V  L  Q  M  F  G  V  Y  P  S  W  V  S  W  T  F  T  I  I  L  N  I  S  V  S  L  A  L  Y  S  L  V  V  F  Y  H  V  F  A  K  E  L  A  P  H  K  P  L  A  K  F  L  C  V  K  G  I  V  F  F  V  F  W  Q  :  G  I  L  L  S  V  L  V  S  L  G  I  I  K  S  H  Y  F  W  L  E  V  E  R  L  Q  E  G  M  Q  N  E  L  V  I  L  E  M  V  F  F  A  I  L  M  R  H  A  Y  S  A  A  P  Y  R  A  E  A  V  T  T  T  S  E  D  A  T  S  G  D  K  K  N  E  *  L  C  N  M  Y  C  C  K  K  I  I  F  R  H  H  S  L  P  H  I  A  C  M  L  C  W  I  C  L  L  M  L  *  *  I  P  T  T  D  Q  L  E  H  F  V  S  V  N  *  H  *  I  P  F  I  L  R  Q  *  I  L  H  L  K  *  N  R  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120835" stop="120545"/>
                    <exon start="120442" stop="120320"/>
                    <exon start="119909" stop="119619"/>
                    <exon start="119122" stop="118898"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWFSCWLTTNMELDLDRGQVTLIASSICLMLTLHFSIQLVTEHFTSWKKPKEQKAIIIIVLMAPLYAIVSFIGLVDFMGSKPFFTFLESVKECYEAIVMAKFLGLMYTYLNISISKNIVPDEIKGRQIHHSFPMTLFQPHTAHLNHHTLKLLKNWTWQFVVIRPVCSILMIVLQMFGVYPSWVSWTFTIILNISVSLALYSLVVFYHVFAKELAPHKPLAKFLCVKGIVFFVFWQGILLSVLVSLGIIKSHYFWLEVERLQEGMQNELVILEMVFFAILMRHAYSAAPYRAEAVTTTSEDATSGDKKNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121864" e_stop="121826"/>
            <exon e_start="120841" e_stop="120545"/>
            <exon e_start="120442" e_stop="120320"/>
            <exon e_start="119909" e_stop="119619"/>
            <exon e_start="119122" e_stop="118700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.722" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.530" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.758" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121864" e_stop="121826" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.722" acc_prob="0.863">
            <gDNA_intron_boundary i_start="121825" i_stop="120842" i_length="984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120841" e_stop="120545" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.530" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120544" i_stop="120443" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120442" e_stop="120320" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.758">
            <gDNA_intron_boundary i_start="120319" i_stop="119910" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119909" e_stop="119619" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="119618" i_stop="119123" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="119122" e_stop="118700" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121864" stop="121826"/>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120841" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120649" stop="120545"/>
              <exon start="120442" stop="120320"/>
              <exon start="119909" stop="119747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120394" stop="120320"/>
              <exon start="119909" stop="119619"/>
              <exon start="119122" stop="118845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119908" stop="119619"/>
              <exon start="119122" stop="118705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119908" stop="119619"/>
              <exon start="119122" stop="118776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119881" stop="119619"/>
              <exon start="119122" stop="118700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119798" stop="119619"/>
              <exon start="119122" stop="118786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAG : GTTTGATTTTGGTTTTCTTGTTGGCTAACAACAAATATGGAATTGGATCTGGATCGTGGGCAAGTCACACTGATAGCATCCAGTATATGTCTTATGCTGACTTTACATTTCAGCATACAGCTAGTGACAGAACATTTTACGTCATGGAAGAAGCCTAAAGAGCAAAAGGCCATAATTATTATCGTCCTCATGGCACCTTTGTATGCTATTGTCTCCTTCATTGGGTTGGTCGATTTCATGGGAAGCAAACCCTTTTTCACTTTCTTGGAATCTGTCAAAGAATGTTATGAAGCAATT : GTGATGGCTAAGTTCCTGGGGTTGATGTACACTTACTTGAATATATCCATAAGCAAAAACATAGTCCCTGATGAAATTAAGGGAAGACAGATTCACCACTCATTCCCAATGACACTCTTCCAG : CCTCACACTGCTCATTTGAACCATCATACATTGAAGCTTCTCAAGAACTGGACATGGCAGTTTGTTGTGATTCGCCCTGTATGCTCTATTTTAATGATTGTTTTACAAATGTTTGGAGTGTACCCTAGTTGGGTTAGCTGGACCTTTACCATCATTTTAAACATATCCGTTTCACTGGCATTGTACTCTCTTGTGGTTTTCTACCACGTGTTTGCGAAGGAGTTGGCGCCTCACAAGCCACTAGCCAAGTTCCTGTGTGTCAAAGGAATTGTCTTTTTCGTCTTCTGGCAG : GGCATTCTGCTTAGTGTTCTGGTATCACTAGGCATAATAAAATCTCACTATTTCTGGCTTGAGGTGGAGCGCCTTCAGGAAGGTATGCAGAATGAACTAGTGATCCTGGAGATGGTTTTCTTCGCTATCCTTATGCGTCATGCATACAGTGCAGCGCCATATCGCGCAGAAGCTGTTACAACTACTTCAGAAGATGCTACTTCTGGAGATAAAAAGAATGAGTGATTATGCAACATGTATTGTTGTAAAAAAATTATCTTCAGACATCACTCACTTCCTCATATTGCTTGTATGTTATGTTGGATTTGCTTGTTGATGTTATAATAGATTCCTACTACAGATCAACTAGAACATTTTGTGAGTGTTAATTAGCACTGAATCCCTTTCATTCTGAGGCAATGAATACTTCATTTGAAATAAAAC</gDNA_template>
            <first_frame> V  I  K  V  Q  G  Q  Q  L  R  K  L  E  :  V  *  F  W  F  S  C  W  L  T  T  N  M  E  L  D  L  D  R  G  Q  V  T  L  I  A  S  S  I  C  L  M  L  T  L  H  F  S  I  Q  L  V  T  E  H  F  T  S  W  K  K  P  K  E  Q  K  A  I  I  I  I  V  L  M  A  P  L  Y  A  I  V  S  F  I  G  L  V  D  F  M  G  S  K  P  F  F  T  F  L  E  S  V  K  E  C  Y  E  A  I  :  V  M  A  K  F  L  G  L  M  Y  T  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  Q  I  H  H  S  F  P  M  T  L  F  Q  :  P  H  T  A  H  L  N  H  H  T  L  K  L  L  K  N  W  T  W  Q  F  V  V  I  R  P  V  C  S  I  L  M  I  V  L  Q  M  F  G  V  Y  P  S  W  V  S  W  T  F  T  I  I  L  N  I  S  V  S  L  A  L  Y  S  L  V  V  F  Y  H  V  F  A  K  E  L  A  P  H  K  P  L  A  K  F  L  C  V  K  G  I  V  F  F  V  F  W  Q  :  G  I  L  L  S  V  L  V  S  L  G  I  I  K  S  H  Y  F  W  L  E  V  E  R  L  Q  E  G  M  Q  N  E  L  V  I  L  E  M  V  F  F  A  I  L  M  R  H  A  Y  S  A  A  P  Y  R  A  E  A  V  T  T  T  S  E  D  A  T  S  G  D  K  K  N  E  *  L  C  N  M  Y  C  C  K  K  I  I  F  R  H  H  S  L  P  H  I  A  C  M  L  C  W  I  C  L  L  M  L  *  *  I  P  T  T  D  Q  L  E  H  F  V  S  V  N  *  H  *  I  P  F  I  L  R  Q  *  I  L  H  L  K  *  N </first_frame>
            <second_frame>  S  *  K  Y  K  V  N  S  *  G  N  *  R :   F  D  F  G  F  L  V  G  *  Q  Q  I  W  N  W  I  W  I  V  G  K  S  H  *  *  H  P  V  Y  V  L  C  *  L  Y  I  S  A  Y  S  *  *  Q  N  I  L  R  H  G  R  S  L  K  S  K  R  P  *  L  L  S  S  S  W  H  L  C  M  L  L  S  P  S  L  G  W  S  I  S  W  E  A  N  P  F  S  L  S  W  N  L  S  K  N  V  M  K  Q  L :   *  W  L  S  S  W  G  *  C  T  L  T  *  I  Y  P  *  A  K  T  *  S  L  M  K  L  R  E  D  R  F  T  T  H  S  Q  *  H  S  S  S :   L  T  L  L  I  *  T  I  I  H  *  S  F  S  R  T  G  H  G  S  L  L  *  F  A  L  Y  A  L  F  *  *  L  F  Y  K  C  L  E  C  T  L  V  G  L  A  G  P  L  P  S  F  *  T  Y  P  F  H  W  H  C  T  L  L  W  F  S  T  T  C  L  R  R  S  W  R  L  T  S  H  *  P  S  S  C  V  S  K  E  L  S  F  S  S  S  G  R :   A  F  C  L  V  F  W  Y  H  *  A  *  *  N  L  T  I  S  G  L  R  W  S  A  F  R  K  V  C  R  M  N  *  *  S  W  R  W  F  S  S  L  S  L  C  V  M  H  T  V  Q  R  H  I  A  Q  K  L  L  Q  L  L  Q  K  M  L  L  L  E  I  K  R  M  S  D  Y  A  T  C  I  V  V  K  K  L  S  S  D  I  T  H  F  L  I  L  L  V  C  Y  V  G  F  A  C  *  C  Y  N  R  F  L  L  Q  I  N  *  N  I  L  *  V  L  I  S  T  E  S  L  S  F  *  G  N  E  Y  F  I  *  N  K   </second_frame>
            <third_frame>   H  K  S  T  R  S  T  A  E  E  T  R   : G  L  I  L  V  F  L  L  A  N  N  K  Y  G  I  G  S  G  S  W  A  S  H  T  D  S  I  Q  Y  M  S  Y  A  D  F  T  F  Q  H  T  A  S  D  R  T  F  Y  V  M  E  E  A  *  R  A  K  G  H  N  Y  Y  R  P  H  G  T  F  V  C  Y  C  L  L  H  W  V  G  R  F  H  G  K  Q  T  L  F  H  F  L  G  I  C  Q  R  M  L  *  S  N   : C  D  G  *  V  P  G  V  D  V  H  L  L  E  Y  I  H  K  Q  K  H  S  P  *  *  N  *  G  K  T  D  S  P  L  I  P  N  D  T  L  P   : A  S  H  C  S  F  E  P  S  Y  I  E  A  S  Q  E  L  D  M  A  V  C  C  D  S  P  C  M  L  Y  F  N  D  C  F  T  N  V  W  S  V  P  *  L  G  *  L  D  L  Y  H  H  F  K  H  I  R  F  T  G  I  V  L  S  C  G  F  L  P  R  V  C  E  G  V  G  A  S  Q  A  T  S  Q  V  P  V  C  Q  R  N  C  L  F  R  L  L  A   : G  H  S  A  *  C  S  G  I  T  R  H  N  K  I  S  L  F  L  A  *  G  G  A  P  S  G  R  Y  A  E  *  T  S  D  P  G  D  G  F  L  R  Y  P  Y  A  S  C  I  Q  C  S  A  I  S  R  R  S  C  Y  N  Y  F  R  R  C  Y  F  W  R  *  K  E  *  V  I  M  Q  H  V  L  L  *  K  N  Y  L  Q  T  S  L  T  S  S  Y  C  L  Y  V  M  L  D  L  L  V  D  V  I  I  D  S  Y  Y  R  S  T  R  T  F  C  E  C  *  L  A  L  N  P  F  H  S  E  A  M  N  T  S  F  E  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0140O20.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120835" stop="120545"/>
                    <exon start="120442" stop="120320"/>
                    <exon start="119909" stop="119619"/>
                    <exon start="119122" stop="118898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWFSCWLTTNMELDLDRGQVTLIASSICLMLTLHFSIQLVTEHFTSWKKPKEQKAIIIIVLMAPLYAIVSFIGLVDFMGSKPFFTFLESVKECYEAIVMAKFLGLMYTYLNISISKNIVPDEIKGRQIHHSFPMTLFQPHTAHLNHHTLKLLKNWTWQFVVIRPVCSILMIVLQMFGVYPSWVSWTFTIILNISVSLALYSLVVFYHVFAKELAPHKPLAKFLCVKGIVFFVFWQGILLSVLVSLGIIKSHYFWLEVERLQEGMQNELVILEMVFFAILMRHAYSAAPYRAEAVTTTSEDATSGDKKNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="122184" e_stop="121728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="122184" e_stop="121728" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122184" stop="121728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTAGCTCCTACACTCATTAGCTATACTTTTTATGTTGAAGTCATTATGTATTTTGTTGGGATTAACCATAAGAAGTCACTTATGTAGATATTTTACTTGTTTAGATTACAATATTGTTGAAAGATCAAATTTTTACTTTTCTTGAAAATGTTGCATCGGTTTTTTAGTGCAGCAGCTGGATCCTTGATGTTTTTTTCTTGGGTGAATCTTGAAATAACCATGATTGTGTTGTAGCCTAGCTAGTTTCAATATAGCTTGTTTGAGTTCAAATTGGCCTTGTGATTTGTAAAGGGTTTGTCTTTTTGATGATTTTTAGGTCATAAAAGTACAAGGTCAACAGCTGAGGAAACTAGAGGTGAGGCAGAGTGATTAGCTTAGTTTGTAATTTCATATTGTTCTTGGGCAAAAGACCCAAAAGTTACTCACTGAGGCACTCACTGTTAGCTAAAATAT</gDNA_template>
            <first_frame> F  F  S  S  Y  T  H  *  L  Y  F  L  C  *  S  H  Y  V  F  C  W  D  *  P  *  E  V  T  Y  V  D  I  L  L  V  *  I  T  I  L  L  K  D  Q  I  F  T  F  L  E  N  V  A  S  V  F  *  C  S  S  W  I  L  D  V  F  F  L  G  E  S  *  N  N  H  D  C  V  V  A  *  L  V  S  I  *  L  V  *  V  Q  I  G  L  V  I  C  K  G  F  V  F  L  M  I  F  R  S  *  K  Y  K  V  N  S  *  G  N  *  R  *  G  R  V  I  S  L  V  C  N  F  I  L  F  L  G  K  R  P  K  S  Y  S  L  R  H  S  L  L  A  K  I  </first_frame>
            <second_frame>  S  L  A  P  T  L  I  S  Y  T  F  Y  V  E  V  I  M  Y  F  V  G  I  N  H  K  K  S  L  M  *  I  F  Y  L  F  R  L  Q  Y  C  *  K  I  K  F  L  L  F  L  K  M  L  H  R  F  F  S  A  A  A  G  S  L  M  F  F  S  W  V  N  L  E  I  T  M  I  V  L  *  P  S  *  F  Q  Y  S  L  F  E  F  K  L  A  L  *  F  V  K  G  L  S  F  *  *  F  L  G  H  K  S  T  R  S  T  A  E  E  T  R  G  E  A  E  *  L  A  *  F  V  I  S  Y  C  S  W  A  K  D  P  K  V  T  H  *  G  T  H  C  *  L  K  Y </second_frame>
            <third_frame>   L  *  L  L  H  S  L  A  I  L  F  M  L  K  S  L  C  I  L  L  G  L  T  I  R  S  H  L  C  R  Y  F  T  C  L  D  Y  N  I  V  E  R  S  N  F  Y  F  S  *  K  C  C  I  G  F  L  V  Q  Q  L  D  P  *  C  F  F  L  G  *  I  L  K  *  P  *  L  C  C  S  L  A  S  F  N  I  A  C  L  S  S  N  W  P  C  D  L  *  R  V  C  L  F  D  D  F  *  V  I  K  V  Q  G  Q  Q  L  R  K  L  E  V  R  Q  S  D  *  L  S  L  *  F  H  I  V  L  G  Q  K  T  Q  K  L  L  T  E  A  L  T  V  S  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0140O20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 469 chains have been computed
$ 
$ memory statistics:
$ 511992 bytes spliced alignments in total
$ 243 spliced alignments have been stored
$ 2106 bytes was the average size of a spliced alignment
$ 37400 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1700 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 496 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:40:01
-->
