<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-03-02 08:39:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0143I18-tA2al/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7181-2" ref_strand="+" ref_description="SGN-M7181-2 C2_At2g06050-2 [cosii_markers]">
      <seq>gcacgagcatctcttcacattcacatgaagaatgtgtatttttcaaattcccaagttccacgaaaacgacctccacagtccaccattcatcgccgtccatttttatctttcaccattaaaacacacctttttctctgtatctcatcatcttcaaaactcactcttcttctctcttctcagttctacagatcctctttcaaacaacaatggcgtcttcagctcaagatggaaacaatccccttttctctccttacaagatgggcaagttcaatctatcccacagggtagtattggctccgatgacaaggtgcagagcactgaataatattccacaggcggcgctaggggagtattacgagcagagagcgacggccggtggatttctgatcactgaaggcactatgatttctccgacttcagctgggtttcctcatgtgccagggattttcacaaaggaacaagtaagggaatggaagaaaatagttgatgtagtgcatgcaaagggtgctgtcatattttgtcagctgtggcatgttggtcgtgcatctcatgaagtgtatcaacctgctggagctgcaccaatatcatccactgagaagcctatatcaaataggtggagaattctaatgcctgatggaactcatgggatttatccaaaaccaagagcaattggaacctatgagatctcacaagttgttgaagattatcgcaggtcggccttgaatgctattgaagcaggtttcgatggtattgaaatccatggagctcacggttacttgattgatcaattcttgaaagatgggatcaatgaccggacagatgagtatggtggatcactagccaaccggtgcaaattcatcacacaggtggttcaagcagtagtctcagcaataggagctgatcgcgtaggcgttagagtttcaccagcaatagatcatcttgatgccatggactctaatccactcagccttggcttagcagttgttgaaagactaaacaaaatccaactccattctggttccaagcttgcctatcttcatgtaacacagccacgatacgtagcatatgggcaaactgaagcaggcagacttggcagtgaagaggaagaggctcgtttaatgaggactttgaggaacgcgtatcaggggacattcatttgcagtggtggatacactagggaactaggaattgaggctgtggcacaaggtgatgctgatctcgtgtcatatggtcgtcttttcatctctaatcctgatttggttatgagaatcaagctaaatgcacctctaaataagtataacaggaagacattctatactcaagatccagttgtgggatacacagattaccctttccttcaaggaaatggaagcaatggaccgttatcgcgtctgtgagaagaacagttgtattttgtaacaacttgtgaaacctgattttgttgggcaatttatttacttggtaaagtatgcaagggatgttgcttttttagagcctagtaccagccaagcctcctcgacttgctaataagagtcggttatggaatagtcttttagtcggctttctctttcttaagcacttgctggtgaatttcaggaagaaatttgtactattaaaaaaacatcaggttttatcattcatgagaaagctctaaaattatcttctcttcttaagcattggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0143I18.1" temp_strand="+" temp_description="C07HBa0143I18.1  AC234362.1 htgs_phase:2 submitted_to_sgn_as:gi|222080330|gb|AC234362.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0143I18, *** SEQUENCING IN PROGRESS ***">
        <position start="29139" stop="34145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29435" g_stop="29716" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29717" i_stop="30016" i_length="300">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30017" g_stop="30157" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="424" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30158" i_stop="31353" i_length="1196">
            <donor d_prob="0.214" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31354" g_stop="31484" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="555" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31485" i_stop="32222" i_length="738">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32223" g_stop="32405" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="738" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32406" i_stop="32899" i_length="494">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32900" g_stop="33850" g_length="951"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="1689" r_length="951" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0143I18.1" gen_strand="+" ref_id="SGN-M7181-2" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0143I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7181-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29435" e_stop="29716"/>
          <exon e_start="30017" e_stop="30157"/>
          <exon e_start="31354" e_stop="31484"/>
          <exon e_start="32223" e_stop="32405"/>
          <exon e_start="32900" e_stop="33850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTC-AACATCTCTTCACATTCACATGAAGAATGTGTATTTTTCAAATTCCCAAGTTCCACGAAAACGACCTCCACAGTCCACCATTCATCGCCGTCCATTTTTATCTTTCACCATTAAAACACACCTTTTTCTCTGTATCTCGTCATCTTCAAAACTCACTCTTCTTCTCTCTTCTCAGTTCTACAGATCCTCTTTCAAACAACAATGGCGTCTTCAGCTCAAGATGGAAACAATCCCCTTTTCTCTCCTTACAAGATGGGCAAGTTCAATCTATCCCACAGGTTAGTTTTCACTTCACAGTTGAATCGAAGATTTTAGTTATATTTGGATCTCAAAATTTACTCTATACTTTTTTTTATGGGTCATCTGCAACTTTCCATTATAAGATCCTAATTTTTTTTACTGATTTTGCTATTTTTTTTGTATTTAGAATAGAAAAAAGTTGTATCAAAAATGGAAGTGGATTTTTATTGTGACGATTTTACCCTTGAGATGGGATCATATTTACGGTCACCTTCACCTCCGATCTTAAGTTTGTGAATGGAGGAACAAAATATTTACGGTTGTTTGACACGTGGCAGGGTAGTATTGGCTCCGATGACAAGGTGCAGAGCACTGAATAATATTCCACAGGCGGCGCTAGGGGAGTATTACGAGCAGAGAGCGACGGCCGGTGGATTTCTGATCACTGAAGGCACTATGATTTCTCCGACTTCAGCTGGGTATGCGTTTGCAAATTTGATTACATTTTAGGGGCTTTTTCGGTAAGAGAGTAGTCAATTATTGATGCTTGTGGGTCCCACATTATACCATTAAAAAAAAGTATAGTTTCTTTACATGTGTATTAATAGTATAGTCAAATCATTAATTAATTAATTAATGGAACTTTGTGGGTCCCTATTGTGTGTCATTTTTTCACTCCCATGTGTATCATAATCATTAAATATTGAAGTTTCTTTTAAATTTATTTATATAATAATCAAATTTATAATTAAATATTTATATATTTAGTGAAATTTATAAATTATAACTTATACAGGTAGTGAGCAAAAGTTTTTGGGTTTAACGTAAAATTTTGAATCTGCCTAATCACGTGGACTTAGTATTTAATAAAAAGATCAACACTTCAAAAATTATTAGTTTAAATCAAGTTATAAATATTTTTGTGTGGATATAAATAATATTTTATTAAAAATAACATGAAAGGTTAAAAGTTAAAAGCAATACAAGTGTTAGAACGATAATAACGTATTTAGTGTGATTCTAAAAGTAATAATAATAACGTATTTAGTGTGATTCTACAAATAATGATAATAACGTATTTAGTGTGATTCTACAAGTAATGATAATAACATATTTTAGTGTGATTCTACAAGTAGTGTTTGTAAGAAAAAATAATAATGTAGTGATTCTACAAGTAGTGTTCGAAGGAACTAGTAAGAACAAGGGGAAGATGAGAGGCAAGAGGGCCAACCTTGATAATACTTGGTTATCTACTAACCTTCTGCTTTAATTCTTGACCTTCAAATAATCAGTTTAGGGTCATGGCCTTGCTAATGTAAATGTTTTATGTTTTGTTTAATCATATTTTTTTCCTAAACTCTTTTTTCAGCTTACTTATAGCTCTACTAATTCTTGCTAAACCAATCTTTCACATCTCTTTTAATGGTGCATCTATGCCCTCCCCTTCACATGTCCCAATCATCTCAATCTTGATTCCCCTAATATAAGATATATTTCCCATATACATCTTTTAACACTTAAACATGATTAATATGTAATTTACACTTTCATTTGTTAATTTTTAAGATTAATTGCTTAGTTCGATGTGAACACCCCATGCAAATATGTCTTACCTCCAAAAGAATCATTATCAAATTAGTTTCTTGATAATTTCTTTTGTGGTGGGGGTTTTCAGGTTTCCTCATGTGCCAGGGATTTTCACAAAGGAACAAGTAAGGGAATGGAAGAAAATAGTTGATGTAGTGCATGCAAAGGGTGCTGTCATATTTTGTCAGCTGTGGCATGTTGGTCGTGCATCTCATGAAGGTAAAAGTTGTTACATTTACACTAAGTTAGGATCATGAATGTTCAATATTGTCTAGATGCATTGTAACTAGTTCGATGAGATAGAAGGTACTCAGTGAAATAGTCGAAGTGTGAAGTTAGTTTGGATACCACCATTATAATGAAAAATGTTGTCTAGATGCGTTGGTGGGAGGTAGAAGAATGCTCAATGAAATAGTCAAGGTATGCGGTAGCTAGTCTAGACACTATTGTTATAAAGAAAAATGTTGTCTAGATGCATTGGTCGGAGGTAGAAAGTACTTGATGAAATAATCGAGATGTGTGCAAGCTAGTCCAATCAACACCATTCTACAGAGAATAGGTGAATGCACTTGTGGAAGGTAAAAGGTCGCTGGTAAAATATACAAGTTGTGTGTGCAAGTTTAGTCCAAACATCATCTTATGAAGATTTCTTTTTCCATATGCATTGCTTTTTAACTCATTTTATTCTCTTTATCTATCAAGGGCAAACTTTTATAACTGTTCCCTCATTATGAAAATGCAATACTGCATGTTCATTCCTCCCTTCATCTCCATTTCTCTTTGACAGTTCATTTAAAGAAGTCAATAGTTTCAAACTCTGTTGCTCGGACTCTTCAAAAATGTTGTTGTACTTGCACCATGCATGTGGGATCCTCCAAAAACCCGCATCAGTCAACATTTAAGAGTTCGAGCAACATAGGTTTCGAATTAGTTATCTTACTAAGCTCATGCTTATAGTGTATCAACCTGCTGGAGCTGCACCAATATCATCCACTGAGAAGCCTATATCAAATAGGTGGAGAATTCTAATGCCTGATGGAACTCATGGGATTTATCCAAAACCAAGAGCAATTGGAACCTATGAGATCTCACAAGTTGTTGAAGATTATCGCAGGTCGGCCTTGAATGCTATTGAAGCAGGTTAGCTCATTCTTTATGTAAATCATGTACCAATGGGCATCTCTGTTTGAAATCCTATGACATCTTTTTCATTGTGTAAGTATTGAAGTTCATACAGTTGAGTTATTTCTGCTCACAAAAAGGTTAACCAGAACGGAACCTTCATTTCATCCTGTAAAGTGTCATTCAGCAGACCGTATTAGAATAGTATTGAATAGGCCGATGTATTATTAATGTTGACATTACTTGGGCTAGGATTTTTTTTTTTTGGTGTATTGAGGACAGTTTTGTCTTTAACCATGCTTATCCATGTACTGATAATAACCCTCTTATTGCTAATACCATGGTTTGCCATGTAATACTGAATAGAAGCTTAGAAAAAGTCATCAGCAGGCCTTCGTGGTAAAGTAGAGTTTTTGTTCTGGTAGATACCGTTTATTGCTAATTCGTTTTCACTCTTTTTGGTTCGTTGTGCTGTGTTAGTCTTAACACCAGAAAAAATCATATATATACAGGTTTCGATGGTATTGAAATCCATGGAGCTCACGGTTACTTGATTGATCAATTCTTGAAAGATGGGATCAATGACCGGACAGATGAGTATGGTGGATCACTAGCCAACCGGTGCAAATTCATCACACAGGTGGTTCAAGCAGTAGTCTCAGCAATAGGAGCTGATCGCGTAGGCGTTAGAGTTTCACCAGCAATAGATCATCTTGATGCCATGGACTCTAATCCACTCAGCCTTGGCTTAGCAGTTGTTGAAAGACTAAACAAAATCCAACTCCATTCTGGTTCCAAGCTTGCCTATCTTCATGTAACACAGCCACGATACGTAGCATATGGGCAAACTGAAGCAGGCAGACTTGGCAGTGAAGAGGAAGAGGCTCGTTTAATGAGGACTTTGAGGAACGCGTATCAGGGGACATTCATTTGCAGTGGTGGATACACTAGGGAACTAGGAATTGAGGCTGTGGCACAAGGTGATGCTGATCTCGTGTCATATGGTCGTCTTTTCATCTCTAATCCTGATTTGGTTATGAGAATCAAGCTAAATGCACCTCTAAATAAGTATAACAGGAAGACATTCTATACTCAAGATCCAGTTGTGGGATACACAGATTACCCTTTCCTTCAAGGAAATGGAAGCAATGGACCGTTATCGCGTCTGTGAGAAGAACAGTTGTATTTTGTAACAACTTGTGAAACCTGATTTTGTTGGGCAATTTATTTACTTGGTAAAGTATGCAAGGGATGTTGCTTTTTTAGAGCCTAGTACCAGCCAAGCCTCCTCGACTTGCTAATAAGAGTCGGTTATGGAATAGTCTTTTAGTCGGCTTTCTCTTTCTTAAGCACTTGCTGGTGAATTTCAGGAAGAAATTTGTACTATTAAAAAAACATCAGGTTTTATCATTCATGAGAAAGCTCTAAAATTATCTTCTCTTCTTAAGCATTGGAATACTCTT</genome_strand>
        <mrna_strand>GCACGAGCATCTCTTCACATTCACATGAAGAATGTGTATTTTTCAAATTCCCAAGTTCCACGAAAACGACCTCCACAGTCCACCATTCATCGCCGTCCATTTTTATCTTTCACCATTAAAACACACCTTTTTCTCTGTATCTCATCATCTTCAAAACTCACTCTTCTTCTCTCTTCTCAGTTCTACAGATCCTCTTTCAAACAACAATGGCGTCTTCAGCTCAAGATGGAAACAATCCCCTTTTCTCTCCTTACAAGATGGGCAAGTTCAATCTATCCCACAG............................................................................................................................................................................................................................................................................................................GGTAGTATTGGCTCCGATGACAAGGTGCAGAGCACTGAATAATATTCCACAGGCGGCGCTAGGGGAGTATTACGAGCAGAGAGCGACGGCCGGTGGATTTCTGATCACTGAAGGCACTATGATTTCTCCGACTTCAGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTCATGTGCCAGGGATTTTCACAAAGGAACAAGTAAGGGAATGGAAGAAAATAGTTGATGTAGTGCATGCAAAGGGTGCTGTCATATTTTGTCAGCTGTGGCATGTTGGTCGTGCATCTCATGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAACCTGCTGGAGCTGCACCAATATCATCCACTGAGAAGCCTATATCAAATAGGTGGAGAATTCTAATGCCTGATGGAACTCATGGGATTTATCCAAAACCAAGAGCAATTGGAACCTATGAGATCTCACAAGTTGTTGAAGATTATCGCAGGTCGGCCTTGAATGCTATTGAAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGTATTGAAATCCATGGAGCTCACGGTTACTTGATTGATCAATTCTTGAAAGATGGGATCAATGACCGGACAGATGAGTATGGTGGATCACTAGCCAACCGGTGCAAATTCATCACACAGGTGGTTCAAGCAGTAGTCTCAGCAATAGGAGCTGATCGCGTAGGCGTTAGAGTTTCACCAGCAATAGATCATCTTGATGCCATGGACTCTAATCCACTCAGCCTTGGCTTAGCAGTTGTTGAAAGACTAAACAAAATCCAACTCCATTCTGGTTCCAAGCTTGCCTATCTTCATGTAACACAGCCACGATACGTAGCATATGGGCAAACTGAAGCAGGCAGACTTGGCAGTGAAGAGGAAGAGGCTCGTTTAATGAGGACTTTGAGGAACGCGTATCAGGGGACATTCATTTGCAGTGGTGGATACACTAGGGAACTAGGAATTGAGGCTGTGGCACAAGGTGATGCTGATCTCGTGTCATATGGTCGTCTTTTCATCTCTAATCCTGATTTGGTTATGAGAATCAAGCTAAATGCACCTCTAAATAAGTATAACAGGAAGACATTCTATACTCAAGATCCAGTTGTGGGATACACAGATTACCCTTTCCTTCAAGGAAATGGAAGCAATGGACCGTTATCGCGTCTGTGAGAAGAACAGTTGTATTTTGTAACAACTTGTGAAACCTGATTTTGTTGGGCAATTTATTTACTTGGTAAAGTATGCAAGGGATGTTGCTTTTTTAGAGCCTAGTACCAGCCAAGCCTCCTCGACTTGCTAATAAGAGTCGGTTATGGAATAGTCTTTTAGTCGGCTTTCTCTTTCTTAAGCACTTGCTGGTGAATTTCAGGAAGAAATTTGTACTATTAAAAAAACATCAGGTTTTATCATTCATGAGAAAGCTCTAAAATTATCTTCTCTTCTTAAGCATTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7181-3" ref_strand="+" ref_description="SGN-M7181-3 C2_At2g06050-3 [cosii_markers]">
      <seq>ctcacatgaacaatgtggatttttcaaattccaagttcaacgaaaacgaaccccacagtccacaattcatcgccgtccatttttatctttcaccattaaagcacaccttttctgtatctcatcatcctaaaaactcactcttctttcttctctgttctacagatcctccttcaacaacaatggctaaaacgacatcgtcttcagctcaagatggaaacaatccccttttctctccttacaagatgggaaagttcaatctctcccacaggatagtattggctccgatgacaaggtgcagagcactgaataatattccacaggcggcgctaggggagtactacgagcagagagcgacggccggtggatttctgatcactgaaggcactatgatttccccgacttcagctgggtttcctcatgtgccagggattttcacaaaggagcaagtagaggaatggaagaaaatagttgatgtagtgcatgcaaagggtgctgtcatattttgtcagctgtggcatgttggtcgtgcatctcatgaagtgtatcaacctgctggagctgcaccaatatcatctactgagaagcctatatcaaagaggtggagaattctgatgcctgatggaactcatgggatttatccaaaaccaagagcaattggaacctatgagatctcacaagtggttgaagattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0143I18.1" temp_strand="+" temp_description="C07HBa0143I18.1  AC234362.1 htgs_phase:2 submitted_to_sgn_as:gi|222080330|gb|AC234362.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0143I18, *** SEQUENCING IN PROGRESS ***">
        <position start="29154" stop="32674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29453" g_stop="29716" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29717" i_stop="30016" i_length="300">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30017" g_stop="30157" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="409" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30158" i_stop="31353" i_length="1196">
            <donor d_prob="0.214" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31354" g_stop="31484" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="540" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31485" i_stop="32222" i_length="738">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32223" g_stop="32375" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="693" r_length="153" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0143I18.1" gen_strand="+" ref_id="SGN-M7181-3" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0143I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7181-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29453" e_stop="29716"/>
          <exon e_start="30017" e_stop="30157"/>
          <exon e_start="31354" e_stop="31484"/>
          <exon e_start="32223" e_stop="32375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATGAAGAATGTGTATTTTTCAAATTCCCAAGTTCCACGAAAACGACCTCCACAGTCCACCATTCATCGCCGTCCATTTTTATCTTTCACCATTAAAACACACCTTTTTCTCTGTATCTCGTCATCTTCAAAACTCACTCTTCTTCTCTCTTCTCAGTTCTACAGATCCTCTTTC-A-AACAA---C---AATG---GCGTCTTCAGCTCAAGATGGAAACAATCCCCTTTTCTCTCCTTACAAGATGGGCAAGTTCAATCTATCCCACAGGTTAGTTTTCACTTCACAGTTGAATCGAAGATTTTAGTTATATTTGGATCTCAAAATTTACTCTATACTTTTTTTTATGGGTCATCTGCAACTTTCCATTATAAGATCCTAATTTTTTTTACTGATTTTGCTATTTTTTTTGTATTTAGAATAGAAAAAAGTTGTATCAAAAATGGAAGTGGATTTTTATTGTGACGATTTTACCCTTGAGATGGGATCATATTTACGGTCACCTTCACCTCCGATCTTAAGTTTGTGAATGGAGGAACAAAATATTTACGGTTGTTTGACACGTGGCAGGGTAGTATTGGCTCCGATGACAAGGTGCAGAGCACTGAATAATATTCCACAGGCGGCGCTAGGGGAGTATTACGAGCAGAGAGCGACGGCCGGTGGATTTCTGATCACTGAAGGCACTATGATTTCTCCGACTTCAGCTGGGTATGCGTTTGCAAATTTGATTACATTTTAGGGGCTTTTTCGGTAAGAGAGTAGTCAATTATTGATGCTTGTGGGTCCCACATTATACCATTAAAAAAAAGTATAGTTTCTTTACATGTGTATTAATAGTATAGTCAAATCATTAATTAATTAATTAATGGAACTTTGTGGGTCCCTATTGTGTGTCATTTTTTCACTCCCATGTGTATCATAATCATTAAATATTGAAGTTTCTTTTAAATTTATTTATATAATAATCAAATTTATAATTAAATATTTATATATTTAGTGAAATTTATAAATTATAACTTATACAGGTAGTGAGCAAAAGTTTTTGGGTTTAACGTAAAATTTTGAATCTGCCTAATCACGTGGACTTAGTATTTAATAAAAAGATCAACACTTCAAAAATTATTAGTTTAAATCAAGTTATAAATATTTTTGTGTGGATATAAATAATATTTTATTAAAAATAACATGAAAGGTTAAAAGTTAAAAGCAATACAAGTGTTAGAACGATAATAACGTATTTAGTGTGATTCTAAAAGTAATAATAATAACGTATTTAGTGTGATTCTACAAATAATGATAATAACGTATTTAGTGTGATTCTACAAGTAATGATAATAACATATTTTAGTGTGATTCTACAAGTAGTGTTTGTAAGAAAAAATAATAATGTAGTGATTCTACAAGTAGTGTTCGAAGGAACTAGTAAGAACAAGGGGAAGATGAGAGGCAAGAGGGCCAACCTTGATAATACTTGGTTATCTACTAACCTTCTGCTTTAATTCTTGACCTTCAAATAATCAGTTTAGGGTCATGGCCTTGCTAATGTAAATGTTTTATGTTTTGTTTAATCATATTTTTTTCCTAAACTCTTTTTTCAGCTTACTTATAGCTCTACTAATTCTTGCTAAACCAATCTTTCACATCTCTTTTAATGGTGCATCTATGCCCTCCCCTTCACATGTCCCAATCATCTCAATCTTGATTCCCCTAATATAAGATATATTTCCCATATACATCTTTTAACACTTAAACATGATTAATATGTAATTTACACTTTCATTTGTTAATTTTTAAGATTAATTGCTTAGTTCGATGTGAACACCCCATGCAAATATGTCTTACCTCCAAAAGAATCATTATCAAATTAGTTTCTTGATAATTTCTTTTGTGGTGGGGGTTTTCAGGTTTCCTCATGTGCCAGGGATTTTCACAAAGGAACAAGTAAGGGAATGGAAGAAAATAGTTGATGTAGTGCATGCAAAGGGTGCTGTCATATTTTGTCAGCTGTGGCATGTTGGTCGTGCATCTCATGAAGGTAAAAGTTGTTACATTTACACTAAGTTAGGATCATGAATGTTCAATATTGTCTAGATGCATTGTAACTAGTTCGATGAGATAGAAGGTACTCAGTGAAATAGTCGAAGTGTGAAGTTAGTTTGGATACCACCATTATAATGAAAAATGTTGTCTAGATGCGTTGGTGGGAGGTAGAAGAATGCTCAATGAAATAGTCAAGGTATGCGGTAGCTAGTCTAGACACTATTGTTATAAAGAAAAATGTTGTCTAGATGCATTGGTCGGAGGTAGAAAGTACTTGATGAAATAATCGAGATGTGTGCAAGCTAGTCCAATCAACACCATTCTACAGAGAATAGGTGAATGCACTTGTGGAAGGTAAAAGGTCGCTGGTAAAATATACAAGTTGTGTGTGCAAGTTTAGTCCAAACATCATCTTATGAAGATTTCTTTTTCCATATGCATTGCTTTTTAACTCATTTTATTCTCTTTATCTATCAAGGGCAAACTTTTATAACTGTTCCCTCATTATGAAAATGCAATACTGCATGTTCATTCCTCCCTTCATCTCCATTTCTCTTTGACAGTTCATTTAAAGAAGTCAATAGTTTCAAACTCTGTTGCTCGGACTCTTCAAAAATGTTGTTGTACTTGCACCATGCATGTGGGATCCTCCAAAAACCCGCATCAGTCAACATTTAAGAGTTCGAGCAACATAGGTTTCGAATTAGTTATCTTACTAAGCTCATGCTTATAGTGTATCAACCTGCTGGAGCTGCACCAATATCATCCACTGAGAAGCCTATATCAAATAGGTGGAGAATTCTAATGCCTGATGGAACTCATGGGATTTATCCAAAACCAAGAGCAATTGGAACCTATGAGATCTCACAAGTTGTTGAAGATTATC</genome_strand>
        <mrna_strand>CTCACATGAACAATGTGGATTTTTCAAATT-CCAAGTTCAACGAAAACGAACCCCACAGTCCACAATTCATCGCCGTCCATTTTTATCTTTCACCATTAAAGCACACC--TTT-TCTGTATCTCATCATCCTAAAAACTCACTCTTC-T-T-TCTTCTCTGTTCTACAGATCCTCCTTCAACAACAATGGCTAAAACGACATCGTCTTCAGCTCAAGATGGAAACAATCCCCTTTTCTCTCCTTACAAGATGGGAAAGTTCAATCTCTCCCACAG............................................................................................................................................................................................................................................................................................................GATAGTATTGGCTCCGATGACAAGGTGCAGAGCACTGAATAATATTCCACAGGCGGCGCTAGGGGAGTACTACGAGCAGAGAGCGACGGCCGGTGGATTTCTGATCACTGAAGGCACTATGATTTCCCCGACTTCAGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTCATGTGCCAGGGATTTTCACAAAGGAGCAAGTAGAGGAATGGAAGAAAATAGTTGATGTAGTGCATGCAAAGGGTGCTGTCATATTTTGTCAGCTGTGGCATGTTGGTCGTGCATCTCATGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAACCTGCTGGAGCTGCACCAATATCATCTACTGAGAAGCCTATATCAAAGAGGTGGAGAATTCTGATGCCTGATGGAACTCATGGGATTTATCCAAAACCAAGAGCAATTGGAACCTATGAGATCTCACAAGTGGTTGAAGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8876" ref_strand="+" ref_description="SGN-M8876 C2_At5g35430 [cosii_markers]">
      <seq>tgaagatctacatttaatatcatccatggagattggtgggcagaacctaccacgacagtctggcttgaaatcttcaaatgatccaacaaggaaccaagctgatgaatttatctcaactgctgaaatgaggattaaactgcacctttgcaaggtccaatttcttctcctcaccaggaatcttaaggcagctaagcgtgaagttaagatggctatgaacacagcacggggtaaagatcattctatggctctctatttgaagtcccagcttgaatatactcgtgggaatcaccgaaaagcaatcaagctcttgatggcatcaagtaatcgggcagaaacaggaatttctagcttatactacaacaacctgggttgcatatattatcgacttggcaagcatcacacttcttctgttttttttgccaaggctctgagtaatagttcatctctccggaaagagcgacctttaaagctctcaaccatctcacaggataagtctcttctcataacctataactgtggtatgcagtacctggcttgtgggaaaccattgctggctgcaggctgtttctataaggctagtcaggttttccacaataggcctcttttatggttacgagttgcagaatgttgtctaatggcccttgagcagggactgctcaagtccagtggtgttgctacttctgacaggtctgaagttaaagttcatgttgttggacaaggaaaatggaggcaacttgttatagaagatggaatatcaagaaatggacaagaaagtttttcaggtaaggaagatttggctactaagggaagacaaccgaagttatcggtactacttgctcgtcagtgtcttctgaatgctttgcatttattgaccagttctgaatcaaaaggtaacaagtccacacagtctcatgcttctggtctggaagaaagtgaaacaagagaagcagtaccatccaagaatggatcaactgaccctaagtcactgaacgtgccagcatctggtcaggttaatgcaaatggggaggtgaaagagcaaaagggtgcaaacagtcaaaatgcctccttcttgaattctctcggtgagtatgaagccacatgtcgaaaagagaatctgatgattgagcaagctgcattggctgatttggcttttgtagagctggaattgggaaatgcattgaaggctcttacaattgcacgatctctcttgaaagtccaagaatgttctagaatatacatctttcttggtaatgtgtatgctgctgaagctctatgcttgctgaaccgggcaaaggaagctgccagagcatttgtcaactatatctccagtggaaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0143I18.1" temp_strand="-" temp_description="C07HBa0143I18.1  AC234362.1 htgs_phase:2 submitted_to_sgn_as:gi|222080330|gb|AC234362.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0143I18, *** SEQUENCING IN PROGRESS ***">
        <position start="37822" stop="35883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37522" g_stop="36183" g_length="1340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1340" r_length="1340" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0143I18.1" gen_strand="-" ref_id="SGN-M8876" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>1340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0143I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37522" e_stop="36183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATCTGCATTTAATATCATCCATGGAGATTGGTGGGCAGAACCTACCACGACAGTCTGGCTTGAAATCTTCAAATGATCCAACAAGGAACCAAGCTGACGAGTTTATCTCAACTGCTGATATGAGGATTAAACTGCACCTTTGCAAGGTCCAATTTCTTCTCCTCACCAGGAATCTTAAGGCAGCTAAGCGTGAAGTTAAGATGGCTATGAACACAGCACGGGGCAAAGATCATTCTATGGCTCTCTATTTGAAGTCCCAGCTTGAATATACTCGTGGGAATCACCGAAAAGCAATCAAGCTCTTGATGGCATCAAGTAATCGGGCAGAAACGGGAATTTCTAGCTTATACTACAACAACCTGGGTTGCATATATTATCGACTTGGCAAGCATCACACTTCTTCTGTATTTTTTGCCAAGGCTCTGAGTAATAGTTCATCTCTCCGGAAAGAGCGACCTTTAAAGCTCTCAACCATCTCTCAGGACAAGTCTCTTCTCATAACCTATAACTGTGGTATGCAGTACCTGGCTTGTGGGAAACCATTGCTGGCTGCAAGCTGTTTCTATAAGGCTAGTCAGGTTTTCCACAGTAGGCCTCTTTTATGGTTACGAGTTGCAGAATGTTGTCTAATGGCACTTGAGCAGGGACTGCTCAAGTCCAGTGGTGTTGCTGCTTCTGACAGGTCTGAAGTTAAAGTACATGTTGTTGGACAAGGAAAATGGAGGCAACTTGTTATGGAAAATGGATTATTAAGAAATGGACAAGAAAGTTTTTCAGGTAAGGAAGATTTGGCTACTAAGGATAGACAACTGAAGCTATCGGTACAACTTGCTCGTCAGTGTCTTCTGAATGCTTTGCATTTATTGAACAGTTCTGAATCAAAAGGTAACAAGTCCACACAGTCTCATGTTTCTGGTGTGGAAGAAAGTGAAACAAGAGAAGTAGTACCATCCAAGCATGGATCAACTGAACCTAAGTCACTGAACGTGCCAGCATCTGGTCAGGTTAATGCAAATGGGGAGGTGAAAGAGCAAAAGGGTACAAGCAGTCAGAATGCCGCCTTCTTGAATTCTCTCGGCGAGTATGAAGCCACATGTAGAAAAGAGAACCTGATGATTGAGCAAGCTGCATTGGCTGATTTGGCTTTTGTAGAGCTGGAATTGGGAAATCCATTGAAGGCTCTTACAATTGCACGATCTCTCTTGAAAGTCCAAGAATGTTCTAGGATATACATCTTTCTTGGTAATGTGTATGCTGCTGAAGCTCTATGCTTGCTGAACCGGGCAAAGGAAGCTG-CAGAGCATTTGTCAACCTTTATCTCCAGTGGCAAGGATG</genome_strand>
        <mrna_strand>TGAAGATCTACATTTAATATCATCCATGGAGATTGGTGGGCAGAACCTACCACGACAGTCTGGCTTGAAATCTTCAAATGATCCAACAAGGAACCAAGCTGATGAATTTATCTCAACTGCTGAAATGAGGATTAAACTGCACCTTTGCAAGGTCCAATTTCTTCTCCTCACCAGGAATCTTAAGGCAGCTAAGCGTGAAGTTAAGATGGCTATGAACACAGCACGGGGTAAAGATCATTCTATGGCTCTCTATTTGAAGTCCCAGCTTGAATATACTCGTGGGAATCACCGAAAAGCAATCAAGCTCTTGATGGCATCAAGTAATCGGGCAGAAACAGGAATTTCTAGCTTATACTACAACAACCTGGGTTGCATATATTATCGACTTGGCAAGCATCACACTTCTTCTGTTTTTTTTGCCAAGGCTCTGAGTAATAGTTCATCTCTCCGGAAAGAGCGACCTTTAAAGCTCTCAACCATCTCACAGGATAAGTCTCTTCTCATAACCTATAACTGTGGTATGCAGTACCTGGCTTGTGGGAAACCATTGCTGGCTGCAGGCTGTTTCTATAAGGCTAGTCAGGTTTTCCACAATAGGCCTCTTTTATGGTTACGAGTTGCAGAATGTTGTCTAATGGCCCTTGAGCAGGGACTGCTCAAGTCCAGTGGTGTTGCTACTTCTGACAGGTCTGAAGTTAAAGTTCATGTTGTTGGACAAGGAAAATGGAGGCAACTTGTTATAGAAGATGGAATATCAAGAAATGGACAAGAAAGTTTTTCAGGTAAGGAAGATTTGGCTACTAAGGGAAGACAACCGAAGTTATCGGTACTACTTGCTCGTCAGTGTCTTCTGAATGCTTTGCATTTATTGACCAGTTCTGAATCAAAAGGTAACAAGTCCACACAGTCTCATGCTTCTGGTCTGGAAGAAAGTGAAACAAGAGAAGCAGTACCATCCAAGAATGGATCAACTGACCCTAAGTCACTGAACGTGCCAGCATCTGGTCAGGTTAATGCAAATGGGGAGGTGAAAGAGCAAAAGGGTGCAAACAGTCAAAATGCCTCCTTCTTGAATTCTCTCGGTGAGTATGAAGCCACATGTCGAAAAGAGAATCTGATGATTGAGCAAGCTGCATTGGCTGATTTGGCTTTTGTAGAGCTGGAATTGGGAAATGCATTGAAGGCTCTTACAATTGCACGATCTCTCTTGAAAGTCCAAGAATGTTCTAGAATATACATCTTTCTTGGTAATGTGTATGCTGCTGAAGCTCTATGCTTGCTGAACCGGGCAAAGGAAGCTGCCAGAGCATTTGTCAA-CTATATCTCCAGTGGAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8011" ref_strand="+" ref_description="SGN-M8011 C2_At3g53270 [cosii_markers]">
      <seq>cgtcttttcattcgagtaatattggatgacagaagctccaaattgaggccataaagagaaggctaggctagcaacatggaccttaaacctttcaaattagacattgatgagcttataaatgactttgccaagggtggatctcctacttttgcagaaatgaagagagtgtgggtttctaaaaagttttcctatattttcgcggctagtccgtctagagatcaggcgtgctttatacaatcactttatgcctactgcagtggttacatggtatctactatttctcttttgagtagactgggtgggctatattgcttatattgcctttatgagacacaaccattcaagcctcctttcaagatttatatatctctaggagagttaaagaatcttaggaacgttgttgctgaggcaaaggccaaagaggttaaagtagtctctgctgtggtcaagcgtatgttagataagaacatgtttctttttggttttgcggatgtgaatgaaagctctgcagcagagagattagacgaactgacaggagtacaaaatgcaagtatccaaatagcgtgcaaaaagttatttgcagatacccggatcgagcacttcactcacatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0143I18-tA2al/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0143I18.1" temp_strand="-" temp_description="C07HBa0143I18.1  AC234362.1 htgs_phase:2 submitted_to_sgn_as:gi|222080330|gb|AC234362.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0143I18, *** SEQUENCING IN PROGRESS ***">
        <position start="83990" stop="77862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83684" g_stop="83600" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="132" r_length="85" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83599" i_stop="83480" i_length="120">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83479" g_stop="83353" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="259" r_length="127" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83352" i_stop="82635" i_length="718">
            <donor d_prob="0.989" d_score="0.84"/>
            <acceptor a_prob="0.690" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82634" g_stop="82521" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="373" r_length="114" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82520" i_stop="78376" i_length="4145">
            <donor d_prob="0.942" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78375" g_stop="78177" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="572" r_length="199" r_score="0.915"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78176" i_stop="78089" i_length="88">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78088" g_stop="78046" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="615" r_length="43" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0143I18.1" gen_strand="-" ref_id="SGN-M8011" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0143I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83684" e_stop="83600"/>
          <exon e_start="83479" e_stop="83353"/>
          <exon e_start="82634" e_stop="82521"/>
          <exon e_start="78375" e_stop="78177"/>
          <exon e_start="78088" e_stop="78046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATAAAGAGAAGTCAAGGTTTGCAATATGGACCTTAAACTATTCAAATTAGACATTGACGAGCTTATAAATGAGTTTGCCAAGGTACTACTAACTTGTTTATGCGTGTTGTCTTTAGTTTAAGTATACAGTAGATATCAATCTCTATTTGTTTATCCTGCACTTCTCATGATTGTTCATACTGATAATATGGTTATTTTGTAGGGTGGATCTCCTACTTTTGCAGAAATGAAGAGAGTGTGGGTTTCTAAAAAGTTCTCCTATATTTTCGAGGCTAGTCCCCCTAAAGATCAAGCATGCTTTATACAATCACTCTATGCTTACTGCATTGGTATGTTAATTTTTTCCATTCTAGACTCTGTTGGTTTACCTAATGTAACATATTTTTAGTTTCTTCCGGAGAGAATGATTCTGATTACTATGGCATACTAAAATGTATGACGTATTAGCATCTACTGCACACCAAACAAAAGAAAGAGTGACCAACCGGATATGTAATCTTCTCTTACTTTAATGTGAAATACGACCATCATGAGGTGCACACTAGAGGACTGTTAAAATTTTATATAGCATAGAAGTACCAATCGATTTGCAATGACTATGCCTTTTTCTCTCAAGTAGAACTCAAATCAATTTCATGAAGGGAACACCGTTTTCTTTATTTATTTATTTGATATATGTGGTTTCGTATTACAAATACAAATGGTCATAGATTTATTTGATTGCTACTATGGAACATTTCATGTGCTATTTTAACCAAATTCCACTTGTTCTATCAGTCAATGAGTAAGAATGTGGAGAACACGAACTAAGAGCCATATCATAAAACATACAGAAATATAGAGAAACCTTAAACTCCAAATCATTTTCAATTTATGCTGACATTCATTCCCTCTTAAAAAAAAGGAAGTGTAAAGTCATTACACTTCTAAGAAAAGCCTTTGTTTTTCTCTTAAAATTTTGGCGGAAGGAGCAGTCATCATACAATAGGATTTTCATCTTGACTGACATTTTCTTTCAGCAGATTAACCAAATGTAATGTATTGCAGGTTATATGGTGTCTACTAATTCTCTTTTGAGTAGACTGGGTGGACTATATTGCCTATATTGCCTCTATGAGACACAGCCATTCAAGCCTCCTTTCAAGATTTATTTATCTATGGGTATAAATAATATCTTCTTAACATGATATGACATGAAATTGTTCTGCATATATGATGATTCTCTCTTTGTGGTGCAAGATTGGTCTAATGAGATGAGAAAAGTTAATATCACATGAAAATCTTAATTAAAAAACATTAGATCCAATTCTTATTCAGTTGTTCCATTAATTGTTAATCTCTTTCATTTAATAAGTAATGGTGAATTTTATAAATGGAAAGGAGGGGACTAAGAAAGTGTATCAAGATTTACATATTGTGCAGCTCCCCGATATACCTAACAAGGAATCAACATCATTTACATAGCCAAGTTGCACCAGAAAGCTAACAAGAAAATGTCTTAAGTTTAAGCCTACGTATATTCCTCCTTTTGCCTTCAAAAATTCTGTTGTGTCATTCTATCCAAATTATCCACCAAATGACCTAAGGTCTATGTGTTCCAAATTGTGTGCCTTCTTGTTGAGCCCAACTCTCTTCCAGCTATGCAGAAATTCTAGAATAGAGTGGGGCACTGTGCTTTCATGTTAAAAATTGCAAAGAACATCTTTGAATTTGGTGAGTATCTTGTGGTGGAAAAATAAGTGGCATGCCACTTCAGGAGTCTCTTTGCAAAGGGGACATCTGCTACATAGTTGTATTCCTCCTCTCAAGATTTGATTGAGTGAGACATGCTTCTTCAACCACCAACCAAGAGAAGCAAGATACCTTCGAAGGTTGCTTACTTGCTTCTTTGTGCCAAATTTCCTCCAGCCCCAAGAAGTGGTATGACCATTTTTTCACAATTTGTAGCATGACTTCACTGAAAAGTTTCCATTTGAAAGTATCATCCTTTTGTTATGGTGCCAAGTAGATTCAAAAGAGAGCATGCACTTTATATTTCCTGATCATTTAAACTTTGTTGGAGAAAAAGATTCTAACTATGTTCATAAAAAAATCAGCATTTTCCCCAAATCTAAAGCTTCTGCTACAACCTACCAGAAAGCTTCATTTGTTTCAAAGAGACTCTTATGTGTTTGAATATGCTTCCGGACTCCATGAGGGACATTTGATACTTTGGTATGCCAAAACCATCTAGTGAGAACTTATCAACTAGAGTCCTCTACAAAAGTGTGCTCTCTTCCCTGTTAAACCTCCCAGTGCTATTTGGTCAAGAGACTAACATTATGAAGTTTTAGGTTCTTAATGCTAAAACTGCCATTGTTCTTATCTCTGGTGACACAGTTCCATTTTATTTGGAAAAAGACTTGGACTGTTTATTTCATTTCCACAGAAAATCCCTTGTAATTTTGTCCATGCGCTTTAAGACTGAAGTAGGAGCAGGAAATAGCGATATTGTTCAAGTGGGAAGAGCATTCAGAACTCTGTAGATTAGAGTGACACTTCCACCCATTGAAAATTATTGTCGTTTCCAGTTGGATAATTTTTCTCCATCTTTCCGAGAGCCTCATTCCAAATGGCCGCTGAATTGTATTTTTTCCCAAAGGAAGTGCCAAATACTTTGTAGGGATAGATCTAATGTTGCATCGTAAGATACACCAAACTGTCAATATCAGAAACATTGCTGACCGGGAATATGTAGTATCTGGCAAAATCAATACCAAGGCCTGAAACAGCCTAAAAATTGTTAGAAACATCCTCAAGAACATAAGTTGCTGTTCCTTGGCTTCATAGAAGATTTCTGTCGTCTGCATAAAGAATATGAGAGGTTTTCAAACCTTCAGGACCCCCAAGAGAAACTAGAAATTCAATTTGCTTGAGCCATATTGTGAGTCATCTTACTGAGTCCCTCCATCATTCCCCATCACCAAAACAAAGAGGAAAGGAGATAAAGGGTCTTCTTGTCTCAAACCTCTTTGACTAGAGTAAAAACCATGTCCTGCACCATTTATGAGAATGCAGAACTTCACTGATGAAATATAAACTAATCTAATGATCCATTTGATACTGACACCCATTTATCTCAATAAATCCAGCTTGAACTTCCCATTAACATGATCCAAGTGCTTTCTTAGTATCCAATTTTCAAGAATTCCAAGTTTTCCAATTTTCGTCCTTGAGTCCAAACATTTGTTAGCTATCCAGGCTGCATCAGTGATATTTCTGTCACTTAAGAAACCCACCTGAGAACTATTGATCAACTTAGGAAGTACAACTTTTAATATGTTCATAAGAGCATTAGATATAATCTTATAAATAATATCTATCGAACTGCTAGGTCACTTCTTTGGGATGAGAGCAATAAAAGACGAATTTAAGCTTTTCTCAAAATGTTCCAGATCATGGAAATGTTCCAGATCGTGGAAATTATAGCCCACATCAAGTCTTCTTTAACTGTATACCAACAGTATTTGTAGCAACCCATGGAGAAACCATCTGGCTCTTAATAACACCAAGAATCTTCTCTTCAAGAGAATATTTTTGCAGCTGTTAGTCAGCTTGATTACTGGAAATATAAGAAACTTCATCCTTTGTGCCTAATATAAAGGAAGAATCTGATGAGCAATCACATCCCTGTCTTCTGTAATAGTCCCATTCATATCTAGCTTGTCAATATGGCTAAATCTTCTACGAGTATTTGCCATGTTATGAAAGATGCTAGTGTTATGATCCCCTTGTTCAACCATAAACACCTCGATTTGGTCGCCTTGAGATCACTTCCAATCTGAAAATCTTCTCCAGCTCAATCTGATTGTGCACCTTTGACATTTGATGCTCATCCAAAGGGGGAGAATTGTCGGATTCTGGTTTGATTTTATAATCCTGTTAAGGATGAAGAATTTTCTATTTTCCAATTGTACAAAAGAAGTCATGTTCCATTCCTTGAGCTTAACTTTCAATAATTAGAGTTTCTTTGCAAAAGATGAAATCTAGCCTGCCAATAATGTTGAAAGAATTCTACAATTCTTTGGCCAAATTTCCGAATCCAATATGTTCGAACTACATGCTTTCAGACTTGAAATGCAGATGCAAATCTCCTAATTTTTTTATGGCATTGTCTAGAGCATATGTCATCATGGATACTTCCTAGATTTCTGTTTTAAAATGTATCATGGAACATGGAAACTGATTTAACACAATTTATGCTTTAGATCAGATCAATTGGGAAGTAAAATGTACATTTATTTTCCGTAGATCTTCTAGATCATTGGCATAGTAAATTGTTCTAGTGAGGATGTTGATTCATAGTTTTATTACTCATACTATACGTAGGTTGCTTTAGGAGAGTTCTCCAAACATGTAACTGGACTATCATGTTTCTATATTTTGCAGGCTATGTGAAATGGATTTTGACCACTAATAGGTGTCCGCAATTGTTGCTTCGACTGATGTTAGAACTTTTCTTGGCTTAGGTTTGGGACATTAACCTGTAACCACAGGTGGGTCAATACTGTATTCAGTTTTCTCAGTGATTCATAGTAATAGTTAAAACCCAAAATTCAAGGAATATATAGATGATGAATAAGTTGGTGTTACTGAGACCACCAATCACAATATTAGCTTATACTATAGTTTTGCGAAAAAGTTCTTAGGTGTAAGTTTCAATTTCATTTGAAGGACATGTTGTGTTTTATTTAAAGAACAATAATCAGTAGGACTTCTTACAAAAAAAAATCCTTGGATACCAAATGATCTCCTCCTCTCTTTTTCTCTCATTTCTCAAATTACCTTATGGCAGTTCTATATTCATGAGAAGTCGTTGCATCTTCAGCATCATAAATACCCCAATGAACATTATAAGTTTTGAACTATTATCTGCAGATTCAATATGCATTATAGTTCACACTTCTAGACTGGTTCACCTTATCTTGGAGTTCCAAATCAGAGAGAGAAATTTCTGTCTGGGAGACATTCTAAACAGCTGATCAATAGTGCTCCAGCAAACCATTGGACCATAGTGCTATATTAGTCTGAAATTTCTTGTTCCTTCTGGCTTAGTTCCACTTAGGATGTATACCATCTGATTAACGTCTGTGGATTCCTTTTATATTGGTACGTGGAGATTTGAATCTGGTACTTCGTCTAGTATTTTCTGTTTACCAATTTTCTAGTGTTAGGTTACGAATTTAGTTCTTTGTGCAACTCTCACGTGCTTTTGATGCACTTATCTTGCTATGATTTGACGATATTTCATCAATTCCATTTGACAGGAGAGTTAAAGAATCTTAGGAACGTTGTCGCTGAAGCAAAGGCCAAAGATGTTAAGGTAGTCCCTGCTGTAGTCAAGCGTATGTTTGATAGGAACATGTTTCTTTTTGGGTTTGTGGATGTGAATGAAAGCTCTGCAGCGGAGAGACTAGATGAACTTTCAGAAGTACAAAATGCAAGTATCCAAATAGCATGCAAAAAGTATGTTACTGATACTTTTCCTGCTACAGCTTGTTATTTCACAATCTACTCTAAACCTTCCCTCATCTTGTTTCCTTTGATGATGTAGGTTATTTGCAAATAGCCGGATCGAGCATTTCACCCACATGGAT</genome_strand>
        <mrna_strand>GCCATAAAGAGAAGGCTAGGCTAGCAACATGGACCTTAAACCTTTCAAATTAGACATTGATGAGCTTATAAATGACTTTGCCAAG........................................................................................................................GGTGGATCTCCTACTTTTGCAGAAATGAAGAGAGTGTGGGTTTCTAAAAAGTTTTCCTATATTTTCGCGGCTAGTCCGTCTAGAGATCAGGCGTGCTTTATACAATCACTTTATGCCTACTGCAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATGGTATCTACTATTTCTCTTTTGAGTAGACTGGGTGGGCTATATTGCTTATATTGCCTTTATGAGACACAACCATTCAAGCCTCCTTTCAAGATTTATATATCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTTAAAGAATCTTAGGAACGTTGTTGCTGAGGCAAAGGCCAAAGAGGTTAAAGTAGTCTCTGCTGTGGTCAAGCGTATGTTAGATAAGAACATGTTTCTTTTTGGTTTTGCGGATGTGAATGAAAGCTCTGCAGCAGAGAGATTAGACGAACTGACAGGAGTACAAAATGCAAGTATCCAAATAGCGTGCAAAAA........................................................................................GTTATTTGCAGATACCCGGATCGAGCACTTCACTCACATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29435" PGL_stop="33850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29435" e_stop="29716"/>
            <exon e_start="30017" e_stop="30157"/>
            <exon e_start="31354" e_stop="31484"/>
            <exon e_start="32223" e_stop="32405"/>
            <exon e_start="32900" e_stop="33850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="0.979"/>
          <exon-intron don_prob="0.214" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.700" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="29435" e_stop="29716" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="29717" i_stop="30016" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30017" e_stop="30157" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.214" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30158" i_stop="31353" i_length="1196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31354" e_stop="31484" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.700">
            <gDNA_intron_boundary i_start="31485" i_stop="32222" i_length="738"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32223" e_stop="32405" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.970">
            <gDNA_intron_boundary i_start="32406" i_stop="32899" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="32900" e_stop="33850" e_length="951"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29435" stop="29716"/>
              <exon start="30017" stop="30157"/>
              <exon start="31354" stop="31484"/>
              <exon start="32223" stop="32405"/>
              <exon start="32900" stop="33850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7181-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29453" stop="29716"/>
              <exon start="30017" stop="30157"/>
              <exon start="31354" stop="31484"/>
              <exon start="32223" stop="32375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7181-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCAACATCTCTTCACATTCACATGAAGAATGTGTATTTTTCAAATTCCCAAGTTCCACGAAAACGACCTCCACAGTCCACCATTCATCGCCGTCCATTTTTATCTTTCACCATTAAAACACACCTTTTTCTCTGTATCTCGTCATCTTCAAAACTCACTCTTCTTCTCTCTTCTCAGTTCTACAGATCCTCTTTCAAACAACAATGGCGTCTTCAGCTCAAGATGGAAACAATCCCCTTTTCTCTCCTTACAAGATGGGCAAGTTCAATCTATCCCACAG : GGTAGTATTGGCTCCGATGACAAGGTGCAGAGCACTGAATAATATTCCACAGGCGGCGCTAGGGGAGTATTACGAGCAGAGAGCGACGGCCGGTGGATTTCTGATCACTGAAGGCACTATGATTTCTCCGACTTCAGCTGG : GTTTCCTCATGTGCCAGGGATTTTCACAAAGGAACAAGTAAGGGAATGGAAGAAAATAGTTGATGTAGTGCATGCAAAGGGTGCTGTCATATTTTGTCAGCTGTGGCATGTTGGTCGTGCATCTCATGAAG : TGTATCAACCTGCTGGAGCTGCACCAATATCATCCACTGAGAAGCCTATATCAAATAGGTGGAGAATTCTAATGCCTGATGGAACTCATGGGATTTATCCAAAACCAAGAGCAATTGGAACCTATGAGATCTCACAAGTTGTTGAAGATTATCGCAGGTCGGCCTTGAATGCTATTGAAGCAG : GTTTCGATGGTATTGAAATCCATGGAGCTCACGGTTACTTGATTGATCAATTCTTGAAAGATGGGATCAATGACCGGACAGATGAGTATGGTGGATCACTAGCCAACCGGTGCAAATTCATCACACAGGTGGTTCAAGCAGTAGTCTCAGCAATAGGAGCTGATCGCGTAGGCGTTAGAGTTTCACCAGCAATAGATCATCTTGATGCCATGGACTCTAATCCACTCAGCCTTGGCTTAGCAGTTGTTGAAAGACTAAACAAAATCCAACTCCATTCTGGTTCCAAGCTTGCCTATCTTCATGTAACACAGCCACGATACGTAGCATATGGGCAAACTGAAGCAGGCAGACTTGGCAGTGAAGAGGAAGAGGCTCGTTTAATGAGGACTTTGAGGAACGCGTATCAGGGGACATTCATTTGCAGTGGTGGATACACTAGGGAACTAGGAATTGAGGCTGTGGCACAAGGTGATGCTGATCTCGTGTCATATGGTCGTCTTTTCATCTCTAATCCTGATTTGGTTATGAGAATCAAGCTAAATGCACCTCTAAATAAGTATAACAGGAAGACATTCTATACTCAAGATCCAGTTGTGGGATACACAGATTACCCTTTCCTTCAAGGAAATGGAAGCAATGGACCGTTATCGCGTCTGTGAGAAGAACAGTTGTATTTTGTAACAACTTGTGAAACCTGATTTTGTTGGGCAATTTATTTACTTGGTAAAGTATGCAAGGGATGTTGCTTTTTTAGAGCCTAGTACCAGCCAAGCCTCCTCGACTTGCTAATAAGAGTCGGTTATGGAATAGTCTTTTAGTCGGCTTTCTCTTTCTTAAGCACTTGCTGGTGAATTTCAGGAAGAAATTTGTACTATTAAAAAAACATCAGGTTTTATCATTCATGAGAAAGCTCTAAAATTATCTTCTCTTCTTAAGCATTGGAATACTCTT</gDNA_template>
            <first_frame> V  Q  H  L  F  T  F  T  *  R  M  C  I  F  Q  I  P  K  F  H  E  N  D  L  H  S  P  P  F  I  A  V  H  F  Y  L  S  P  L  K  H  T  F  F  S  V  S  R  H  L  Q  N  S  L  F  F  S  L  L  S  S  T  D  P  L  S  N  N  N  G  V  F  S  S  R  W  K  Q  S  P  F  L  S  L  Q  D  G  Q  V  Q  S  I  P  Q  :  G  S  I  G  S  D  D  K  V  Q  S  T  E  *  Y  S  T  G  G  A  R  G  V  L  R  A  E  S  D  G  R  W  I  S  D  H  *  R  H  Y  D  F  S  D  F  S  W  :  V  S  S  C  A  R  D  F  H  K  G  T  S  K  G  M  E  E  N  S  *  C  S  A  C  K  G  C  C  H  I  L  S  A  V  A  C  W  S  C  I  S  *  S :   V  S  T  C  W  S  C  T  N  I  I  H  *  E  A  Y  I  K  *  V  E  N  S  N  A  *  W  N  S  W  D  L  S  K  T  K  S  N  W  N  L  *  D  L  T  S  C  *  R  L  S  Q  V  G  L  E  C  Y  *  S  R :   F  R  W  Y  *  N  P  W  S  S  R  L  L  D  *  S  I  L  E  R  W  D  Q  *  P  D  R  *  V  W  W  I  T  S  Q  P  V  Q  I  H  H  T  G  G  S  S  S  S  L  S  N  R  S  *  S  R  R  R  *  S  F  T  S  N  R  S  S  *  C  H  G  L  *  S  T  Q  P  W  L  S  S  C  *  K  T  K  Q  N  P  T  P  F  W  F  Q  A  C  L  S  S  C  N  T  A  T  I  R  S  I  W  A  N  *  S  R  Q  T  W  Q  *  R  G  R  G  S  F  N  E  D  F  E  E  R  V  S  G  D  I  H  L  Q  W  W  I  H  *  G  T  R  N  *  G  C  G  T  R  *  C  *  S  R  V  I  W  S  S  F  H  L  *  S  *  F  G  Y  E  N  Q  A  K  C  T  S  K  *  V  *  Q  E  D  I  L  Y  S  R  S  S  C  G  I  H  R  L  P  F  P  S  R  K  W  K  Q  W  T  V  I  A  S  V  R  R  T  V  V  F  C  N  N  L  *  N  L  I  L  L  G  N  L  F  T  W  *  S  M  Q  G  M  L  L  F  *  S  L  V  P  A  K  P  P  R  L  A  N  K  S  R  L  W  N  S  L  L  V  G  F  L  F  L  K  H  L  L  V  N  F  R  K  K  F  V  L  L  K  K  H  Q  V  L  S  F  M  R  K  L  *  N  Y  L  L  F  L  S  I  G  I  L   </first_frame>
            <second_frame>  F  N  I  S  S  H  S  H  E  E  C  V  F  F  K  F  P  S  S  T  K  T  T  S  T  V  H  H  S  S  P  S  I  F  I  F  H  H  *  N  T  P  F  S  L  Y  L  V  I  F  K  T  H  S  S  S  L  F  S  V  L  Q  I  L  F  Q  T  T  M  A  S  S  A  Q  D  G  N  N  P  L  F  S  P  Y  K  M  G  K  F  N  L  S  H  R :   V  V  L  A  P  M  T  R  C  R  A  L  N  N  I  P  Q  A  A  L  G  E  Y  Y  E  Q  R  A  T  A  G  G  F  L  I  T  E  G  T  M  I  S  P  T  S  A  G :   F  P  H  V  P  G  I  F  T  K  E  Q  V  R  E  W  K  K  I  V  D  V  V  H  A  K  G  A  V  I  F  C  Q  L  W  H  V  G  R  A  S  H  E   : V  Y  Q  P  A  G  A  A  P  I  S  S  T  E  K  P  I  S  N  R  W  R  I  L  M  P  D  G  T  H  G  I  Y  P  K  P  R  A  I  G  T  Y  E  I  S  Q  V  V  E  D  Y  R  R  S  A  L  N  A  I  E  A   : G  F  D  G  I  E  I  H  G  A  H  G  Y  L  I  D  Q  F  L  K  D  G  I  N  D  R  T  D  E  Y  G  G  S  L  A  N  R  C  K  F  I  T  Q  V  V  Q  A  V  V  S  A  I  G  A  D  R  V  G  V  R  V  S  P  A  I  D  H  L  D  A  M  D  S  N  P  L  S  L  G  L  A  V  V  E  R  L  N  K  I  Q  L  H  S  G  S  K  L  A  Y  L  H  V  T  Q  P  R  Y  V  A  Y  G  Q  T  E  A  G  R  L  G  S  E  E  E  E  A  R  L  M  R  T  L  R  N  A  Y  Q  G  T  F  I  C  S  G  G  Y  T  R  E  L  G  I  E  A  V  A  Q  G  D  A  D  L  V  S  Y  G  R  L  F  I  S  N  P  D  L  V  M  R  I  K  L  N  A  P  L  N  K  Y  N  R  K  T  F  Y  T  Q  D  P  V  V  G  Y  T  D  Y  P  F  L  Q  G  N  G  S  N  G  P  L  S  R  L  *  E  E  Q  L  Y  F  V  T  T  C  E  T  *  F  C  W  A  I  Y  L  L  G  K  V  C  K  G  C  C  F  F  R  A  *  Y  Q  P  S  L  L  D  L  L  I  R  V  G  Y  G  I  V  F  *  S  A  F  S  F  L  S  T  C  W  *  I  S  G  R  N  L  Y  Y  *  K  N  I  R  F  Y  H  S  *  E  S  S  K  I  I  F  S  S  *  A  L  E  Y  S  </second_frame>
            <third_frame>   S  T  S  L  H  I  H  M  K  N  V  Y  F  S  N  S  Q  V  P  R  K  R  P  P  Q  S  T  I  H  R  R  P  F  L  S  F  T  I  K  T  H  L  F  L  C  I  S  S  S  S  K  L  T  L  L  L  S  S  Q  F  Y  R  S  S  F  K  Q  Q  W  R  L  Q  L  K  M  E  T  I  P  F  S  L  L  T  R  W  A  S  S  I  Y  P  T   : G  *  Y  W  L  R  *  Q  G  A  E  H  *  I  I  F  H  R  R  R  *  G  S  I  T  S  R  E  R  R  P  V  D  F  *  S  L  K  A  L  *  F  L  R  L  Q  L   : G  F  L  M  C  Q  G  F  S  Q  R  N  K  *  G  N  G  R  K  *  L  M  *  C  M  Q  R  V  L  S  Y  F  V  S  C  G  M  L  V  V  H  L  M  K  :  C  I  N  L  L  E  L  H  Q  Y  H  P  L  R  S  L  Y  Q  I  G  G  E  F  *  C  L  M  E  L  M  G  F  I  Q  N  Q  E  Q  L  E  P  M  R  S  H  K  L  L  K  I  I  A  G  R  P  *  M  L  L  K  Q  :  V  S  M  V  L  K  S  M  E  L  T  V  T  *  L  I  N  S  *  K  M  G  S  M  T  G  Q  M  S  M  V  D  H  *  P  T  G  A  N  S  S  H  R  W  F  K  Q  *  S  Q  Q  *  E  L  I  A  *  A  L  E  F  H  Q  Q  *  I  I  L  M  P  W  T  L  I  H  S  A  L  A  *  Q  L  L  K  D  *  T  K  S  N  S  I  L  V  P  S  L  P  I  F  M  *  H  S  H  D  T  *  H  M  G  K  L  K  Q  A  D  L  A  V  K  R  K  R  L  V  *  *  G  L  *  G  T  R  I  R  G  H  S  F  A  V  V  D  T  L  G  N  *  E  L  R  L  W  H  K  V  M  L  I  S  C  H  M  V  V  F  S  S  L  I  L  I  W  L  *  E  S  S  *  M  H  L  *  I  S  I  T  G  R  H  S  I  L  K  I  Q  L  W  D  T  Q  I  T  L  S  F  K  E  M  E  A  M  D  R  Y  R  V  C  E  K  N  S  C  I  L  *  Q  L  V  K  P  D  F  V  G  Q  F  I  Y  L  V  K  Y  A  R  D  V  A  F  L  E  P  S  T  S  Q  A  S  S  T  C  *  *  E  S  V  M  E  *  S  F  S  R  L  S  L  S  *  A  L  A  G  E  F  Q  E  E  I  C  T  I  K  K  T  S  G  F  I  I  H  E  K  A  L  K  L  S  S  L  L  K  H  W  N  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0143I18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29553" stop="29716"/>
                    <exon start="30017" stop="30157"/>
                    <exon start="31354" stop="31484"/>
                    <exon start="32223" stop="32405"/>
                    <exon start="32900" stop="33558"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTPFSLYLVIFKTHSSSLFSVLQILFQTTMASSAQDGNNPLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFYTQDPVVGYTDYPFLQGNGSNGPLSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="37522" PGL_stop="36183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37522" e_stop="36183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="37522" e_stop="36183" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37522" stop="36183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGATCTGCATTTAATATCATCCATGGAGATTGGTGGGCAGAACCTACCACGACAGTCTGGCTTGAAATCTTCAAATGATCCAACAAGGAACCAAGCTGACGAGTTTATCTCAACTGCTGATATGAGGATTAAACTGCACCTTTGCAAGGTCCAATTTCTTCTCCTCACCAGGAATCTTAAGGCAGCTAAGCGTGAAGTTAAGATGGCTATGAACACAGCACGGGGCAAAGATCATTCTATGGCTCTCTATTTGAAGTCCCAGCTTGAATATACTCGTGGGAATCACCGAAAAGCAATCAAGCTCTTGATGGCATCAAGTAATCGGGCAGAAACGGGAATTTCTAGCTTATACTACAACAACCTGGGTTGCATATATTATCGACTTGGCAAGCATCACACTTCTTCTGTATTTTTTGCCAAGGCTCTGAGTAATAGTTCATCTCTCCGGAAAGAGCGACCTTTAAAGCTCTCAACCATCTCTCAGGACAAGTCTCTTCTCATAACCTATAACTGTGGTATGCAGTACCTGGCTTGTGGGAAACCATTGCTGGCTGCAAGCTGTTTCTATAAGGCTAGTCAGGTTTTCCACAGTAGGCCTCTTTTATGGTTACGAGTTGCAGAATGTTGTCTAATGGCACTTGAGCAGGGACTGCTCAAGTCCAGTGGTGTTGCTGCTTCTGACAGGTCTGAAGTTAAAGTACATGTTGTTGGACAAGGAAAATGGAGGCAACTTGTTATGGAAAATGGATTATTAAGAAATGGACAAGAAAGTTTTTCAGGTAAGGAAGATTTGGCTACTAAGGATAGACAACTGAAGCTATCGGTACAACTTGCTCGTCAGTGTCTTCTGAATGCTTTGCATTTATTGAACAGTTCTGAATCAAAAGGTAACAAGTCCACACAGTCTCATGTTTCTGGTGTGGAAGAAAGTGAAACAAGAGAAGTAGTACCATCCAAGCATGGATCAACTGAACCTAAGTCACTGAACGTGCCAGCATCTGGTCAGGTTAATGCAAATGGGGAGGTGAAAGAGCAAAAGGGTACAAGCAGTCAGAATGCCGCCTTCTTGAATTCTCTCGGCGAGTATGAAGCCACATGTAGAAAAGAGAACCTGATGATTGAGCAAGCTGCATTGGCTGATTTGGCTTTTGTAGAGCTGGAATTGGGAAATCCATTGAAGGCTCTTACAATTGCACGATCTCTCTTGAAAGTCCAAGAATGTTCTAGGATATACATCTTTCTTGGTAATGTGTATGCTGCTGAAGCTCTATGCTTGCTGAACCGGGCAAAGGAAGCTGCAGAGCATTTGTCAACCTTTATCTCCAGTGGCAAGGATG</gDNA_template>
            <first_frame> *  R  S  A  F  N  I  I  H  G  D  W  W  A  E  P  T  T  T  V  W  L  E  I  F  K  *  S  N  K  E  P  S  *  R  V  Y  L  N  C  *  Y  E  D  *  T  A  P  L  Q  G  P  I  S  S  P  H  Q  E  S  *  G  S  *  A  *  S  *  D  G  Y  E  H  S  T  G  Q  R  S  F  Y  G  S  L  F  E  V  P  A  *  I  Y  S  W  E  S  P  K  S  N  Q  A  L  D  G  I  K  *  S  G  R  N  G  N  F  *  L  I  L  Q  Q  P  G  L  H  I  L  S  T  W  Q  A  S  H  F  F  C  I  F  C  Q  G  S  E  *  *  F  I  S  P  E  R  A  T  F  K  A  L  N  H  L  S  G  Q  V  S  S  H  N  L  *  L  W  Y  A  V  P  G  L  W  E  T  I  A  G  C  K  L  F  L  *  G  *  S  G  F  P  Q  *  A  S  F  M  V  T  S  C  R  M  L  S  N  G  T  *  A  G  T  A  Q  V  Q  W  C  C  C  F  *  Q  V  *  S  *  S  T  C  C  W  T  R  K  M  E  A  T  C  Y  G  K  W  I  I  K  K  W  T  R  K  F  F  R  *  G  R  F  G  Y  *  G  *  T  T  E  A  I  G  T  T  C  S  S  V  S  S  E  C  F  A  F  I  E  Q  F  *  I  K  R  *  Q  V  H  T  V  S  C  F  W  C  G  R  K  *  N  K  R  S  S  T  I  Q  A  W  I  N  *  T  *  V  T  E  R  A  S  I  W  S  G  *  C  K  W  G  G  E  R  A  K  G  Y  K  Q  S  E  C  R  L  L  E  F  S  R  R  V  *  S  H  M  *  K  R  E  P  D  D  *  A  S  C  I  G  *  F  G  F  C  R  A  G  I  G  K  S  I  E  G  S  Y  N  C  T  I  S  L  E  S  P  R  M  F  *  D  I  H  L  S  W  *  C  V  C  C  *  S  S  M  L  A  E  P  G  K  G  S  C  R  A  F  V  N  L  Y  L  Q  W  Q  G   </first_frame>
            <second_frame>  E  D  L  H  L  I  S  S  M  E  I  G  G  Q  N  L  P  R  Q  S  G  L  K  S  S  N  D  P  T  R  N  Q  A  D  E  F  I  S  T  A  D  M  R  I  K  L  H  L  C  K  V  Q  F  L  L  L  T  R  N  L  K  A  A  K  R  E  V  K  M  A  M  N  T  A  R  G  K  D  H  S  M  A  L  Y  L  K  S  Q  L  E  Y  T  R  G  N  H  R  K  A  I  K  L  L  M  A  S  S  N  R  A  E  T  G  I  S  S  L  Y  Y  N  N  L  G  C  I  Y  Y  R  L  G  K  H  H  T  S  S  V  F  F  A  K  A  L  S  N  S  S  S  L  R  K  E  R  P  L  K  L  S  T  I  S  Q  D  K  S  L  L  I  T  Y  N  C  G  M  Q  Y  L  A  C  G  K  P  L  L  A  A  S  C  F  Y  K  A  S  Q  V  F  H  S  R  P  L  L  W  L  R  V  A  E  C  C  L  M  A  L  E  Q  G  L  L  K  S  S  G  V  A  A  S  D  R  S  E  V  K  V  H  V  V  G  Q  G  K  W  R  Q  L  V  M  E  N  G  L  L  R  N  G  Q  E  S  F  S  G  K  E  D  L  A  T  K  D  R  Q  L  K  L  S  V  Q  L  A  R  Q  C  L  L  N  A  L  H  L  L  N  S  S  E  S  K  G  N  K  S  T  Q  S  H  V  S  G  V  E  E  S  E  T  R  E  V  V  P  S  K  H  G  S  T  E  P  K  S  L  N  V  P  A  S  G  Q  V  N  A  N  G  E  V  K  E  Q  K  G  T  S  S  Q  N  A  A  F  L  N  S  L  G  E  Y  E  A  T  C  R  K  E  N  L  M  I  E  Q  A  A  L  A  D  L  A  F  V  E  L  E  L  G  N  P  L  K  A  L  T  I  A  R  S  L  L  K  V  Q  E  C  S  R  I  Y  I  F  L  G  N  V  Y  A  A  E  A  L  C  L  L  N  R  A  K  E  A  A  E  H  L  S  T  F  I  S  S  G  K  D  </second_frame>
            <third_frame>   K  I  C  I  *  Y  H  P  W  R  L  V  G  R  T  Y  H  D  S  L  A  *  N  L  Q  M  I  Q  Q  G  T  K  L  T  S  L  S  Q  L  L  I  *  G  L  N  C  T  F  A  R  S  N  F  F  S  S  P  G  I  L  R  Q  L  S  V  K  L  R  W  L  *  T  Q  H  G  A  K  I  I  L  W  L  S  I  *  S  P  S  L  N  I  L  V  G  I  T  E  K  Q  S  S  S  *  W  H  Q  V  I  G  Q  K  R  E  F  L  A  Y  T  T  T  T  W  V  A  Y  I  I  D  L  A  S  I  T  L  L  L  Y  F  L  P  R  L  *  V  I  V  H  L  S  G  K  S  D  L  *  S  S  Q  P  S  L  R  T  S  L  F  S  *  P  I  T  V  V  C  S  T  W  L  V  G  N  H  C  W  L  Q  A  V  S  I  R  L  V  R  F  S  T  V  G  L  F  Y  G  Y  E  L  Q  N  V  V  *  W  H  L  S  R  D  C  S  S  P  V  V  L  L  L  L  T  G  L  K  L  K  Y  M  L  L  D  K  E  N  G  G  N  L  L  W  K  M  D  Y  *  E  M  D  K  K  V  F  Q  V  R  K  I  W  L  L  R  I  D  N  *  S  Y  R  Y  N  L  L  V  S  V  F  *  M  L  C  I  Y  *  T  V  L  N  Q  K  V  T  S  P  H  S  L  M  F  L  V  W  K  K  V  K  Q  E  K  *  Y  H  P  S  M  D  Q  L  N  L  S  H  *  T  C  Q  H  L  V  R  L  M  Q  M  G  R  *  K  S  K  R  V  Q  A  V  R  M  P  P  S  *  I  L  S  A  S  M  K  P  H  V  E  K  R  T  *  *  L  S  K  L  H  W  L  I  W  L  L  *  S  W  N  W  E  I  H  *  R  L  L  Q  L  H  D  L  S  *  K  S  K  N  V  L  G  Y  T  S  F  L  V  M  C  M  L  L  K  L  Y  A  C  *  T  G  Q  R  K  L  Q  S  I  C  Q  P  L  S  P  V  A  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0143I18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37521" stop="36184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1338</number_coding_nucleotides>
                  <number_encoded_amino_acids>446</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDLHLISSMEIGGQNLPRQSGLKSSNDPTRNQADEFISTADMRIKLHLCKVQFLLLTRNLKAAKREVKMAMNTARGKDHSMALYLKSQLEYTRGNHRKAIKLLMASSNRAETGISSLYYNNLGCIYYRLGKHHTSSVFFAKALSNSSSLRKERPLKLSTISQDKSLLITYNCGMQYLACGKPLLAASCFYKASQVFHSRPLLWLRVAECCLMALEQGLLKSSGVAASDRSEVKVHVVGQGKWRQLVMENGLLRNGQESFSGKEDLATKDRQLKLSVQLARQCLLNALHLLNSSESKGNKSTQSHVSGVEESETREVVPSKHGSTEPKSLNVPASGQVNANGEVKEQKGTSSQNAAFLNSLGEYEATCRKENLMIEQAALADLAFVELELGNPLKALTIARSLLKVQECSRIYIFLGNVYAAEALCLLNRAKEAAEHLSTFISSGKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="83684" PGL_stop="78046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83684" e_stop="83600"/>
            <exon e_start="83479" e_stop="83353"/>
            <exon e_start="82634" e_stop="82521"/>
            <exon e_start="78375" e_stop="78177"/>
            <exon e_start="78088" e_stop="78046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.894"/>
          <exon-intron don_prob="0.989" acc_prob="0.690" e_score="0.921"/>
          <exon-intron don_prob="0.942" acc_prob="0.979" e_score="0.912"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.915"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="83684" e_stop="83600" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83599" i_stop="83480" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="83479" e_stop="83353" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.690">
            <gDNA_intron_boundary i_start="83352" i_stop="82635" i_length="718"/>
          </intron>
          <exon e_serial="3" e_score="0.912">
            <gDNA_exon_boundary e_start="82634" e_stop="82521" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.979">
            <gDNA_intron_boundary i_start="82520" i_stop="78376" i_length="4145"/>
          </intron>
          <exon e_serial="4" e_score="0.915">
            <gDNA_exon_boundary e_start="78375" e_stop="78177" e_length="199"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78176" i_stop="78089" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.884">
            <gDNA_exon_boundary e_start="78088" e_stop="78046" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83684" stop="83600"/>
              <exon start="83479" stop="83353"/>
              <exon start="82634" stop="82521"/>
              <exon start="78375" stop="78177"/>
              <exon start="78088" stop="78046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCATAAAGAGAAGTCAAGGTTTGCAATATGGACCTTAAACTATTCAAATTAGACATTGACGAGCTTATAAATGAGTTTGCCAAG : GGTGGATCTCCTACTTTTGCAGAAATGAAGAGAGTGTGGGTTTCTAAAAAGTTCTCCTATATTTTCGAGGCTAGTCCCCCTAAAGATCAAGCATGCTTTATACAATCACTCTATGCTTACTGCATTG : GTTATATGGTGTCTACTAATTCTCTTTTGAGTAGACTGGGTGGACTATATTGCCTATATTGCCTCTATGAGACACAGCCATTCAAGCCTCCTTTCAAGATTTATTTATCTATGG : GAGAGTTAAAGAATCTTAGGAACGTTGTCGCTGAAGCAAAGGCCAAAGATGTTAAGGTAGTCCCTGCTGTAGTCAAGCGTATGTTTGATAGGAACATGTTTCTTTTTGGGTTTGTGGATGTGAATGAAAGCTCTGCAGCGGAGAGACTAGATGAACTTTCAGAAGTACAAAATGCAAGTATCCAAATAGCATGCAAAAA : GTTATTTGCAAATAGCCGGATCGAGCATTTCACCCACATGGAT</gDNA_template>
            <first_frame> A  I  K  R  S  Q  G  L  Q  Y  G  P  *  T  I  Q  I  R  H  *  R  A  Y  K  *  V  C  Q   : G  W  I  S  Y  F  C  R  N  E  E  S  V  G  F  *  K  V  L  L  Y  F  R  G  *  S  P  *  R  S  S  M  L  Y  T  I  T  L  C  L  L  H  W :   L  Y  G  V  Y  *  F  S  F  E  *  T  G  W  T  I  L  P  I  L  P  L  *  D  T  A  I  Q  A  S  F  Q  D  L  F  I  Y  G :   R  V  K  E  S  *  E  R  C  R  *  S  K  G  Q  R  C  *  G  S  P  C  C  S  Q  A  Y  V  *  *  E  H  V  S  F  W  V  C  G  C  E  *  K  L  C  S  G  E  T  R  *  T  F  R  S  T  K  C  K  Y  P  N  S  M  Q  K  :  V  I  C  K  *  P  D  R  A  F  H  P  H  G  </first_frame>
            <second_frame>  P  *  R  E  V  K  V  C  N  M  D  L  K  L  F  K  L  D  I  D  E  L  I  N  E  F  A  K  :  G  G  S  P  T  F  A  E  M  K  R  V  W  V  S  K  K  F  S  Y  I  F  E  A  S  P  P  K  D  Q  A  C  F  I  Q  S  L  Y  A  Y  C  I   : G  Y  M  V  S  T  N  S  L  L  S  R  L  G  G  L  Y  C  L  Y  C  L  Y  E  T  Q  P  F  K  P  P  F  K  I  Y  L  S  M   : G  E  L  K  N  L  R  N  V  V  A  E  A  K  A  K  D  V  K  V  V  P  A  V  V  K  R  M  F  D  R  N  M  F  L  F  G  F  V  D  V  N  E  S  S  A  A  E  R  L  D  E  L  S  E  V  Q  N  A  S  I  Q  I  A  C  K  K :   L  F  A  N  S  R  I  E  H  F  T  H  M  D </second_frame>
            <third_frame>   H  K  E  K  S  R  F  A  I  W  T  L  N  Y  S  N  *  T  L  T  S  L  *  M  S  L  P  R :   V  D  L  L  L  L  Q  K  *  R  E  C  G  F  L  K  S  S  P  I  F  S  R  L  V  P  L  K  I  K  H  A  L  Y  N  H  S  M  L  T  A  L  :  V  I  W  C  L  L  I  L  F  *  V  D  W  V  D  Y  I  A  Y  I  A  S  M  R  H  S  H  S  S  L  L  S  R  F  I  Y  L  W  :  E  S  *  R  I  L  G  T  L  S  L  K  Q  R  P  K  M  L  R  *  S  L  L  *  S  S  V  C  L  I  G  T  C  F  F  L  G  L  W  M  *  M  K  A  L  Q  R  R  D  *  M  N  F  Q  K  Y  K  M  Q  V  S  K  *  H  A  K   : S  Y  L  Q  I  A  G  S  S  I  S  P  T  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0143I18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83677" stop="83600"/>
                    <exon start="83479" stop="83353"/>
                    <exon start="82634" stop="82521"/>
                    <exon start="78375" stop="78177"/>
                    <exon start="78088" stop="78046"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVKVCNMDLKLFKLDIDELINEFAKGGSPTFAEMKRVWVSKKFSYIFEASPPKDQACFIQSLYAYCIGYMVSTNSLLSRLGGLYCLYCLYETQPFKPPFKIYLSMGELKNLRNVVAEAKAKDVKVVPAVVKRMFDRNMFLFGFVDVNESSAAERLDELSEVQNASIQIACKKLFANSRIEHFTHMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 8880 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2220 bytes was the average size of a spliced alignment
$ 8136 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2712 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2009-03-02 08:39:36
-->
