<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:29:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543312" ref_strand="+" ref_description="SGN-E543312 [TUS-65-B1]">
      <seq>ctcctctctgtttctccattggctcttccttcttctccagctatcttcttcaccttcaaacttagtattctgagttaattttttcttctaaacttcaattttgcatcattattgcataaaattttcgaaactgaattcaatttttttgttatttgctaaagaaattatcgtttctgatcaaataggaggattcggaggttagatttcaggcgttttcagctatttcagattctaaactgaagtgaacagaacatccattatgctggaatgacttcaagtacataagatcctatgcattgaggatgaagggaggtttaaaggttccactgatctctctcatccttattggatttgtctgcgccagtattattattttggcatacgtgaaaagcccttttctctcttattggacatcatctcaagaccgtgtcttccagatttctccagattataaagtgaaagatgaagaagttttaaaagaaagaaatagatcagggcaatcagaagaaaatgtgaactttgaatctgccatttcacactcttcaatgaaggataaggtgactgaagaaccaattactaatactgagatcgaaggaagtgtaggtattcctctcaactttacccaaaaaggaggagatttaaaagccttgggagaaaaaaatagttcaagagaacaggaaaatgaagtcgctgctccactggattctgcaggcgtcgctatagaaatatgacatctgattcaaagatcatggttgtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10923" stop="15164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11223" g_stop="11441" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13259" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="447" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13260" i_stop="14119" i_length="860">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14120" g_stop="14266" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="594" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14267" i_stop="14698" i_length="432">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14699" g_stop="14857" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="751" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14858" i_stop="15149" i_length="292">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15150" g_stop="15159" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="761" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E543312" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11223" e_stop="11441"/>
          <exon e_start="13032" e_stop="13259"/>
          <exon e_start="14120" e_stop="14266"/>
          <exon e_start="14699" e_stop="14857"/>
          <exon e_start="15150" e_stop="15159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAGGTTTGGCATAAATTCTCTTTTGACATTTTCCATACCATTGGTAATTCATTTTCCACTTTAAATTAGCAAATATGTTGACCCATTTGAAGATAAGGTAGTGTATATTAGGTCATAAAAGTTGCTGTTATTTGGCAGTTCAACCTTTTTATTTTTGTGAGAAAAAATCTCTTTGCATCTGTTTAGTGGTATGAAGCATTCTTTTACTGAGATGCAGTTACGAGCCAGTGGTTGCATAAAACTCAATACCACTGGAGCAGCCATTGTAGATAACACGTACCAGAACAAATCATGTCTAAATAAACAAAGGTGTTTTATTTACGCTGGATCACATTGCTGTATTCGAGTTGAGATGACATGAAACTTGGCAGAAGCTCTTTGTTGTGGATACCTCTCACCTGGTTGATCTGCTTGAATTATGCTAAAACATAAAGCTTCTTTTCTCAACTTTTTCCCAGTAAATTATGATATCATCTGTTTCTTCAACAACTTTAAGTAATAAGGCTACTAATCTAAATTCCCCACTTAGTGGATACGTCCCATTAAAGATCCTACCTTGACTTTTCTAGGTATTGAGAGTGGAATGTTTGGATTAGTTGTCTTATGCATTTTGGTGCATAAGTGTTCTAACATAATGTTTCAAATATAAAAAAGTTGAATATTAATCGATCGGATGTCATGTAGAGTTTGAAACAATAAAATATAGTATGATTTGACATCAATTTAAATGTTGGAGGGAGGAAAAAGCTTTCCTCTTTAAGGTACGTAGTTGTTTTGGGACAAACCAAAAAGTTAAATAGAACTTGATGGAAATGTTGCCAAATCCTATTGGAGCACTTATCTATTCTTTGTTTCTCTAGCAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTGAGATCGAAGGTACAGTATGTTCGAGTACTATCTTTCATTTTCCTGCGTGCCTCAAATCATGAAGAATTAGTGGTAATAGTACAGTAATGTGTCAGTTTTCTATCCTTCAAATGTGAACTTCCCTTTTCCTGAGTTGTATGAATAAAATAGCTCCTAATCTGCTTATTGTATTACTGAATCTGTTGCTTCCAGCTCCTCAACTTTTATTAATGCTTACCAAAGTGTGAGTTTTAGGGGGGGGGGGGGTTGCCCTTCTCCGAACCCTGCTAACTTGAGATGCTTTGTGCACCCGGTTCCTTTTTACAGTGTTATTTCTTTGCAGTAAAGAACTATTTTCACTGGTATCTATTCATGTTTTGTACTATCCTTGTACTCTGAGATACCATTGTGGTTAATCAATCACTAGTCTCCACAGCTTCATGTTTTTATGGTCCTTTTCAGGAAGTGTAGGTATTCCTCTCAACTTTACCCAAAAAGGAGGAGATTTAAAAGCCTTGGGAGAAAAAAATAGTTCAAGAGAACAGGAAAATGAAGTCGCTGCTCCACTGGATTCTGCAGGCGTCGCTATAGAAAATATGACATCTGATTCAAAAGATCATGGTGATTATCATTCTATTTGATTCTTTGGTTCCTGCTCTTTAATGTTATTTATCTGTAAATTTTATCTTAATGTTCACAAAACTTGAATCTTGATGGATTTGAGTCATTTGATTTAAATGTCTTTGAATTAAATCCTAATTTCTTTCCTTATATAATTTTTTCACTCTTTCTTTGGTTCTGGATAATCTGAAAAATGGTCTTGTTTGCCAAGCGACGTATCCTTAATTGTTTGGTGAATTTGTTACAACGGTTAGTAAGTAGTTAGTTACTAATACCTTATCTTAATTTCCAGGTTGTAATTA</genome_strand>
        <mrna_strand>CTCCTCTCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTGAGATCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGTAGGTATTCCTCTCAACTTTACCCAAAAAGGAGGAGATTTAAAAGCCTTGGGAGAAAAAAATAGTTCAAGAGAACAGGAAAATGAAGTCGCTGCTCCACTGGATTCTGCAGGCGTCGCTATAG-AAATATGACATCTGATTC-AAAGATCATG....................................................................................................................................................................................................................................................................................................GTTGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303185" ref_strand="+" ref_description="SGN-E303185 [cLEX-5-J24]">
      <seq>tcctctctgtttctccattggctcttccttcttctccagctatcttcttcaccttcaaacttagtattctgagttaattttttcttctaaacttcaattttgcatcattattgcataaaattttcgaaactgaattcaatttttttgttatttgctaaagaaattatcgtttctgatcaaataggaggattcggaggttagatttcaggcgttttcagctatttcagattctaaactgaagtgaacagaacatccattatgctggaatgacttcaagtacataagatcctatgcattgaggatgaagggaggtttaaaggttccactgatctctctcatccttattggatttgtctgcgccagtattattattttggcatacgtgaaaagcccttttctctcttattggacatcatctcaagaccgtgtcttccagatttctccagattataaagtgaaagatgaagaagttttaaaagaaagaaatagatcagggcaatcagaagaaaatgtgaactttgaatctgccatttcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10924" stop="14513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11224" g_stop="11441" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13259" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="446" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13260" i_stop="14119" i_length="860">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14120" g_stop="14213" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="540" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E303185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11224" e_stop="11441"/>
          <exon e_start="13032" e_stop="13259"/>
          <exon e_start="14120" e_stop="14213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAGGTTTGGCATAAATTCTCTTTTGACATTTTCCATACCATTGGTAATTCATTTTCCACTTTAAATTAGCAAATATGTTGACCCATTTGAAGATAAGGTAGTGTATATTAGGTCATAAAAGTTGCTGTTATTTGGCAGTTCAACCTTTTTATTTTTGTGAGAAAAAATCTCTTTGCATCTGTTTAGTGGTATGAAGCATTCTTTTACTGAGATGCAGTTACGAGCCAGTGGTTGCATAAAACTCAATACCACTGGAGCAGCCATTGTAGATAACACGTACCAGAACAAATCATGTCTAAATAAACAAAGGTGTTTTATTTACGCTGGATCACATTGCTGTATTCGAGTTGAGATGACATGAAACTTGGCAGAAGCTCTTTGTTGTGGATACCTCTCACCTGGTTGATCTGCTTGAATTATGCTAAAACATAAAGCTTCTTTTCTCAACTTTTTCCCAGTAAATTATGATATCATCTGTTTCTTCAACAACTTTAAGTAATAAGGCTACTAATCTAAATTCCCCACTTAGTGGATACGTCCCATTAAAGATCCTACCTTGACTTTTCTAGGTATTGAGAGTGGAATGTTTGGATTAGTTGTCTTATGCATTTTGGTGCATAAGTGTTCTAACATAATGTTTCAAATATAAAAAAGTTGAATATTAATCGATCGGATGTCATGTAGAGTTTGAAACAATAAAATATAGTATGATTTGACATCAATTTAAATGTTGGAGGGAGGAAAAAGCTTTCCTCTTTAAGGTACGTAGTTGTTTTGGGACAAACCAAAAAGTTAAATAGAACTTGATGGAAATGTTGCCAAATCCTATTGGAGCACTTATCTATTCTTTGTTTCTCTAGCAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTC</genome_strand>
        <mrna_strand>TCCTCTCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359683" ref_strand="+" ref_description="SGN-E359683 [cLPP-5-G23]">
      <seq>tctgtttctccattggctcttccttcttctccagctatcttcttcaccttcaaacttagtattctgagttaattttttcttctaaacttcaattttgcatcattattgcataattttttcgaaactgaattcaatttgtttgttatttgctaaagaaattatcgtttctgatcaaataggaggattcggaggttagatttcaggcgttttcagctatttcagatactaaactgaagtgaacagaacatccattatggtggaatgacttcaagtacataagatcctatgcattgaggatgaagggaggtttaaaggttccgctgatctctctcatccttattggatttgtctgcgccagtgttattattttggcatacgtgaaaagcccttttctctcttattggacatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10929" stop="13529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11229" g_stop="11441" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13229" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="411" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E359683" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11229" e_stop="11441"/>
          <exon e_start="13032" e_stop="13229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCAT</genome_strand>
        <mrna_strand>TCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAATTTTTTCGAAACTGAATTCAATTTGTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATACTAAACTGAAGTGAACAGAACATCCATTATGGTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCGCTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTGTTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307266" ref_strand="+" ref_description="SGN-E307266 [cLEY-12-C4]">
      <seq>ttggctcttccttcttctccagctatcttcttcaccttcaaacttagtattctgagttaattttttcttctaaacttcaattttgcatcattattgcataaaattttcgaaactgaattcaatttttttgttatttgctaaagaaattatcgtttctgatcaaataggaggattcggaggttagatttcaggcgttttcagctatttcagattctaaactgaagtgaacagaacatccattatgctggaatgacttcaagtacataagatcctatgcattgaggatgaagggaggtttaaaggttccactgatctctctcatccttattggatttgtctgcgccagtattattattttggcatacgtgaaaagcccttttctctcttattggacatcatctcaagaccgtgtcttccagatttctccagcagattataaagtgaaagatgaagaagttttaaaagaaagaaatagatcagggcaatcagaagaaaatgtgaactttgaatctgccatttcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10941" stop="14512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11241" g_stop="11441" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13259" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="429" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13260" i_stop="14116" i_length="857">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.286" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14117" g_stop="14212" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="525" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E307266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11241" e_stop="11441"/>
          <exon e_start="13032" e_stop="13259"/>
          <exon e_start="14117" e_stop="14212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAGGTTTGGCATAAATTCTCTTTTGACATTTTCCATACCATTGGTAATTCATTTTCCACTTTAAATTAGCAAATATGTTGACCCATTTGAAGATAAGGTAGTGTATATTAGGTCATAAAAGTTGCTGTTATTTGGCAGTTCAACCTTTTTATTTTTGTGAGAAAAAATCTCTTTGCATCTGTTTAGTGGTATGAAGCATTCTTTTACTGAGATGCAGTTACGAGCCAGTGGTTGCATAAAACTCAATACCACTGGAGCAGCCATTGTAGATAACACGTACCAGAACAAATCATGTCTAAATAAACAAAGGTGTTTTATTTACGCTGGATCACATTGCTGTATTCGAGTTGAGATGACATGAAACTTGGCAGAAGCTCTTTGTTGTGGATACCTCTCACCTGGTTGATCTGCTTGAATTATGCTAAAACATAAAGCTTCTTTTCTCAACTTTTTCCCAGTAAATTATGATATCATCTGTTTCTTCAACAACTTTAAGTAATAAGGCTACTAATCTAAATTCCCCACTTAGTGGATACGTCCCATTAAAGATCCTACCTTGACTTTTCTAGGTATTGAGAGTGGAATGTTTGGATTAGTTGTCTTATGCATTTTGGTGCATAAGTGTTCTAACATAATGTTTCAAATATAAAAAAGTTGAATATTAATCGATCGGATGTCATGTAGAGTTTGAAACAATAAAATATAGTATGATTTGACATCAATTTAAATGTTGGAGGGAGGAAAAAGCTTTCCTCTTTAAGGTACGTAGTTGTTTTGGGACAAACCAAAAAGTTAAATAGAACTTGATGGAAATGTTGCCAAATCCTATTGGAGCACTTATCTATTCTTTGTTTCTCTAGCAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACT</genome_strand>
        <mrna_strand>TTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307267" ref_strand="+" ref_description="SGN-E307267 [cLEY-12-C6]">
      <seq>gctatcttcttcaccttcaaacttagtattccgaggtaattttttctactaaacttcaattttgcatcattattgcataaaattttcgaaactgaattcaatgttttcgctatccgctaaagaaattatcgtttcctgatcaaataggaggattcggaggttagatctcaggcgttgtcagctatttcagattctaaactgaagcgaacagaacatccattatgctggaatgacttcccacacataagatcctatgccttgaggatgaacggaggtttaaaggttccactgatctctctcatcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10962" stop="13457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11262" g_stop="11441" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.058" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13157" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="307" r_length="126" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E307267" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11262" e_stop="11441"/>
          <exon e_start="13032" e_stop="13157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTT-CTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTA</genome_strand>
        <mrna_strand>GCTATCTTCTTCACCTTCAAACTTAGTATTCCGAGGTAATTTTTTCTACTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATGTTTTCGCTATCCGCTAAAGAAATTATCGTTTCCTGATCAAATAGGAGGATTCGGAGGTTAGATCTCAGGCGTTGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATTCTAAACTGAAGCGAACAGAACATCCATTATGCTGGAATGACTTCCCACACATAAGATCCTATGCCTTGAGGATGAACGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300092" ref_strand="+" ref_description="SGN-E300092 [cLEW-11-I2]">
      <seq>aaacttagtattctgagttaattttttcttctaaacttcaattttgcatcattattgcataaaattttcgaaactgaattcaatttttttgttatttgctaaagaaattatcgtttctgatcaaataggaggattcggaggttagatttcaggcgttttcagctatttcagattctaaactgaagtgaacagaacatccattatgctggaatgacttcaagtacataagatcctatgcattgaggatgaagggaggtttaaaggttccactgatctctctcatccttattggatttgtctgcgccagtattattattttggcatacgtgaaaagcccttttctctcttattggacatcatctcaagaccgtgtcttccagatttctccagcagattataaagtgaaagatgaagaagttttaaaagaaagaaatagatcagggcaatcagaagaaaatgtgaactttgaatctgccatttcacactcttcaatgaaggataaggtgactgaagaaccaattactaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="10980" stop="14557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11280" g_stop="11441" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13032" g_stop="13259" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="390" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13260" i_stop="14116" i_length="857">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.286" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14117" g_stop="14257" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="531" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E300092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11280" e_stop="11441"/>
          <exon e_start="13032" e_stop="13259"/>
          <exon e_start="14117" e_stop="14257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAGGTATGCATTTCTAGATTGTTGTATTTAGATTCACATTGCCGTAATTCTGTTTGTATTTGTGAATTTTCATTTGCCAATTTCTTAAATATCCATATTCTTGTTGTTGAATATTTCGCGTTGTGTATGTTATATAATATCTTCATCAGTATTTTCTAGGGTTCGCTCACTTATCATTGTAACTTGTGTAGATGTGTTTTGAACAGAACCAGAAATTTTGATAAGTAATTTCGTAAGGATCTACGAATTGTCTTGTTTTCTGGGTTTTTGTTAATGCATTTTTTTAATGTTAAATAATTCCTTTTTTTAATTTTTAAAAACTAGCATTTGGAACTAGTTTTGACTTTATAAGTTAACACTACTTGAGGGGACAAAGACCATCGATGAATCTGCTGCAATCTGAACTTCAGTAGTTGATGTGTGCTTACGGAAAAAGTAGCTCGGTGCTTTGTTCAAAACTGAAGTGATTAGGAACAAAACCAACATTATTTCTTTGATGTTCAGATGAGTATAAATATTCAAGTAATTCATGAGAATTCAAAGAACAGCTCTAGAATTCTAGAAACAGGTATTTGGTTATATTGGATCATCCAAAAATGCAGCTGGACACATGTCAGGTTCTCCGAAAATGGGTAACTTTTGGACGATCTGACATGCAAAGGATCTAAGCAAGTAATATGTTAGAAGAGAGCAGCATATGCCCTCACTTAAATGCTTCCATCACCACCTATAGATAGAGGTGGTCATTTTGAGTTATGATCAAGCAAGAAGTGAGCAATCAAGAAAGAACGTGTAAGAGAAAATGTGATAAATAAGAAAGAGCAACAATTAGAGCTGCTACAGTGTGAGCAAAGGGAAAAATTGCATTGAAAAGATTTATAAGACCGAAGTTGCTTTGTAGTTTGAAATGATAACATTCAAGTTGGGAGAAACTACTTGTATTCAACATTAAGATGCAGGGTTAAATGGAGGTTAAAAAGATCTTATAGATGGCAAAGGCAGGGTCAGCTTGGTCATGAAATTAGGTGGGGGAACCCAAAAAGGGCCCTTGGATATGGAGAAGGAAGCTAAAGGAAGTATATCTTCTGCTGATCTAGGAGGAATCTCAAATGTTGACAATTTGATTGTAATTTCATACAAAGGAAGGTTTTTCTTTATCATGCATCTCAAATGATAAGAAGGTTTTACATCTCATATCTGTACTAATTAATGATAAAGGGGACATAGAAGTAGTTTTGGACTTAATTTTACTGTGAGCCTACAACACCCTCATTACCCCCTATATAGATAAGAAGAGAGGGTAACTGTAAGAGTGTTAGTTTCCTTTTGATTCTCTCTCTCTCTATCACTTCTACTTATTTTTTTTGTTTCAAGCTTGTATTTCTACTTAATTAACTCAAACAAACTTTACAGCATAATTGGTGGCTAGTAGAAAATTATTGTCTATCTGTCATGGAGGTGGCTTCTTATATATTTCTGTTGTAAATTTTTGTTGTCTATATCAGGAGTCTAAAATTGTCCTGTGAATCTCTAATCAATTTCTTTCCACCAGAACACTATTTTCCAGTCTTGCTTTAAACATTTCCCTTTCAGCTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAGGTTTGGCATAAATTCTCTTTTGACATTTTCCATACCATTGGTAATTCATTTTCCACTTTAAATTAGCAAATATGTTGACCCATTTGAAGATAAGGTAGTGTATATTAGGTCATAAAAGTTGCTGTTATTTGGCAGTTCAACCTTTTTATTTTTGTGAGAAAAAATCTCTTTGCATCTGTTTAGTGGTATGAAGCATTCTTTTACTGAGATGCAGTTACGAGCCAGTGGTTGCATAAAACTCAATACCACTGGAGCAGCCATTGTAGATAACACGTACCAGAACAAATCATGTCTAAATAAACAAAGGTGTTTTATTTACGCTGGATCACATTGCTGTATTCGAGTTGAGATGACATGAAACTTGGCAGAAGCTCTTTGTTGTGGATACCTCTCACCTGGTTGATCTGCTTGAATTATGCTAAAACATAAAGCTTCTTTTCTCAACTTTTTCCCAGTAAATTATGATATCATCTGTTTCTTCAACAACTTTAAGTAATAAGGCTACTAATCTAAATTCCCCACTTAGTGGATACGTCCCATTAAAGATCCTACCTTGACTTTTCTAGGTATTGAGAGTGGAATGTTTGGATTAGTTGTCTTATGCATTTTGGTGCATAAGTGTTCTAACATAATGTTTCAAATATAAAAAAGTTGAATATTAATCGATCGGATGTCATGTAGAGTTTGAAACAATAAAATATAGTATGATTTGACATCAATTTAAATGTTGGAGGGAGGAAAAAGCTTTCCTCTTTAAGGTACGTAGTTGTTTTGGGACAAACCAAAAAGTTAAATAGAACTTGATGGAAATGTTGCCAAATCCTATTGGAGCACTTATCTATTCTTTGTTTCTCTAGCAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTG</genome_strand>
        <mrna_strand>AAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208475" ref_strand="+" ref_description="SGN-E208475 [cLEC-39-E3]">
      <seq>aaagatcatggttgtaattatgctaaaggtagatgggtcacagatgatagtcggcctttatattctggatttcgctgcaagcggtggttgtcagccatgtgggcttgccgcttgacacagcgtacggattttgaatacgagaaactacgttggagaccaagggattgcgagatcgaagagtttacaggtgttaaattcctgaaaaggatggagaacaaaactctggccttcattggggattcccttggcagacaacaattccagtcgcttatgtgtatgattactggtggtgaagacagacctgatgttcttgacgtgggacgtgaatatggtcttgtaaaggctcgtcatgctgtacgacctgatggatgggcttatcgatttccaaggacccaaacaactattctttactattggtctgctagtttgtgtaacttgacacccattaatgcctctaaccctcttactgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="14841" stop="16357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14848" g_stop="14857" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14858" i_stop="15149" i_length="292">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15150" g_stop="15345" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="206" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15346" i_stop="15788" i_length="443">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15789" g_stop="16057" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="475" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E208475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14848" e_stop="14857"/>
          <exon e_start="15150" e_stop="15345"/>
          <exon e_start="15789" e_stop="16057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCATGGTGATTATCATTCTATTTGATTCTTTGGTTCCTGCTCTTTAATGTTATTTATCTGTAAATTTTATCTTAATGTTCACAAAACTTGAATCTTGATGGATTTGAGTCATTTGATTTAAATGTCTTTGAATTAAATCCTAATTTCTTTCCTTATATAATTTTTTCACTCTTTCTTTGGTTCTGGATAATCTGAAAAATGGTCTTGTTTGCCAAGCGACGTATCCTTAATTGTTTGGTGAATTTGTTACAACGGTTAGTAAGTAGTTAGTTACTAATACCTTATCTTAATTTCCAGGTTGTAATTATGCTAAAGGTAGATGGGTCACAGATGATAGTCGGCCTTTATATTCTGGATTTCGCTGCAAGCGGTGGTTGTCAGCCATGTGGGCTTGCCGCTTGACACAGCGTACGGATTTTGAATACGAGAAACTACGTTGGAGACCAAGGGATTGCGAGATCGAAGAGTTTACAGGTGTTAAATTCCTGAAAAGGTATATTCTTTTTTTCTGAAACTGATCAACATCTGATGCTTGCAATATGTATAACCTAAGAAAAATTCTTATGAGCTCTATTAGAACTTTCTCTCTTTTTCTGAGTAGCATAAGTACTGTACCTACCATGTCTTGTCATGTATTTTCCTAGAGCAGAAGAGTGAGCTTGACTGAACCCACCCAACAGATTAGCACTTATATCGCACATAAACTGCAAGAAATTGTGACTATGGAACTCCATTATGTAGCGCTTGTTGTCCTCATCTCTCGCACATCCTAATGTCTGAATAGAGAAAATTCTTTTTGGACAACTTTTCCACGTCTAAGTTTCTTGTTGCATAGAAATATTGCAGTCTTCTCTCTTCCTCAAGTCTTCATGTGATACTTAGTTGACTTCATGACTCTTTCTACATGGAATTTTCTGAACTTGGTTGTGGATCTAGGATGGAGAACAAAACTCTGGCCTTCATTGGGGATTCCCTTGGCAGACAACAATTCCAGTCGCTTATGTGTATGATTACTGGTGGTGAAGACAGACCTGATGTTCTTGACGTGGGACGTGAATATGGTCTTGTAAAGGCTCGTCATGCTGTACGACCTGATGGATGGGCTTATCGATTTCCAAGGACCCAAACAACTATTCTTTACTATTGGTCTGCTAGTTTGTGTAACTTGACACCCATTAATGCCTCTAACCCTCTTACTGATTATG</genome_strand>
        <mrna_strand>AAAGATCATG....................................................................................................................................................................................................................................................................................................GTTGTAATTATGCTAAAGGTAGATGGGTCACAGATGATAGTCGGCCTTTATATTCTGGATTTCGCTGCAAGCGGTGGTTGTCAGCCATGTGGGCTTGCCGCTTGACACAGCGTACGGATTTTGAATACGAGAAACTACGTTGGAGACCAAGGGATTGCGAGATCGAAGAGTTTACAGGTGTTAAATTCCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAACAAAACTCTGGCCTTCATTGGGGATTCCCTTGGCAGACAACAATTCCAGTCGCTTATGTGTATGATTACTGGTGGTGAAGACAGACCTGATGTTCTTGACGTGGGACGTGAATATGGTCTTGTAAAGGCTCGTCATGCTGTACGACCTGATGGATGGGCTTATCGATTTCCAAGGACCCAAACAACTATTCTTTACTATTGGTCTGCTAGTTTGTGTAACTTGACACCCATTAATGCCTCTAACCCTCTTACTGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="17305" stop="16528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17005" g_stop="16829" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17005" e_stop="16829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTTGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGACTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332521" ref_strand="+" ref_description="SGN-E332521 [cTOD-18-A7]">
      <seq>atatcctaaaattttacctacaaattcctcaatcttcaaaccccacttgaaaaaattttctccaaattccatcaataagattcaaagatttttttgtccttttcccctgtttagtttgtggagggttttcaagaattcaataaatggatacagacaatcggttttactgtcggaaacggtccaggtttcgtggaattttcaatgggctttgtttgtcggtattggttgttttcttcttccgtagagaagatgttgttcaaagtccactttccaagaaatctttcaaaattagtgctgttagaaaggaaacgagtttgagttatcatcatttgggtgaaagcagggatatcaaattatgtggtgggttgtataaacatcaaggttacagtacaaaatgtgactacttgaaggcaaatcctcattgtaattcagggggtttcttgaattatcttttcttcttttactgtacctgtgaaggttttagtatttttggatatgtcactcttgctatttggttgatttctttgttctatcttttgggaaatactgctgctgattacttctgttgttgtcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="25489" stop="26668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25789" g_stop="26368" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E332521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25789" e_stop="26368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTAAAATTTTACCTACAAATTCCTCAATCTTCAAACCCCACTTGAAAAAATTTTCTCCAAATTCCATCAATAAGATTCAAAGATTTTTTTGTCCTTTTCCCCTGTTTAGTTTGTGGAGGGTTTTCAAGAATTCAATAAATGGATACAGACAATCGGTTTTACTGTCGGAAACGGTCCAGGTTTCGTGGAATTTTCAATGGGCTTTGTTTGTCGGTATTGGTTGTTTTCTTCTTCCGTAGAGAAGATGTTGTTCAAAGTCCACTTTCCAAGAAATCTTTCAAAATTAGTGCTGTTAGAAAGGAAACGAGTTTGAGTTATCATCATTTGGGTGAAAGCAGGGATATCAAATTATGTGGTGGGTTGTATAAACATCAAGGTTACAGTACAAAATGTGACTACTTGAAGGCAAATCCTCATTGTAATTCAGGGGGTTTCTTGAATTATCTTTTCTTCTTTTACTGTACCTGTGAAGGTTTTAGTATTTTTGGATATGTCACTCTTGCTATTTGGTTGATTTCTTTGTTCTATCTTTTGGGAAATACTGCTGCTGATTACTTCTGTTGTTGTCTTGAAAA</genome_strand>
        <mrna_strand>ATATCCTAAAATTTTACCTACAAATTCCTCAATCTTCAAACCCCACTTGAAAAAATTTTCTCCAAATTCCATCAATAAGATTCAAAGATTTTTTTGTCCTTTTCCCCTGTTTAGTTTGTGGAGGGTTTTCAAGAATTCAATAAATGGATACAGACAATCGGTTTTACTGTCGGAAACGGTCCAGGTTTCGTGGAATTTTCAATGGGCTTTGTTTGTCGGTATTGGTTGTTTTCTTCTTCCGTAGAGAAGATGTTGTTCAAAGTCCACTTTCCAAGAAATCTTTCAAAATTAGTGCTGTTAGAAAGGAAACGAGTTTGAGTTATCATCATTTGGGTGAAAGCAGGGATATCAAATTATGTGGTGGGTTGTATAAACATCAAGGTTACAGTACAAAATGTGACTACTTGAAGGCAAATCCTCATTGTAATTCAGGGGGTTTCTTGAATTATCTTTTCTTCTTTTACTGTACCTGTGAAGGTTTTAGTATTTTTGGATATGTCACTCTTGCTATTTGGTTGATTTCTTTGTTCTATCTTTTGGGAAATACTGCTGCTGATTACTTCTGTTGTTGTCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350862" ref_strand="+" ref_description="SGN-E350862 [cTOS-7-C12]">
      <seq>cattccaaagtttctctattattttgaaatttctttcaacatataattcatttttttcccaaaaattcaagattattttcatagctgcattttcagttctgacggataactttgtgtcaattttaattaaacatggtggaaagtggaattctttgggttaaaatcctacctccaaatatgttatgaagacggacgatgatgcttttgtaaggattgataaaattctatctagtctcaagggaaaggatcctaatggtctattatatggtgggatatcttttgaatggtctataacgaatcaatgttacaattatttttgtatgaattttgtttgaaatagattgcaactttatatgaactaatttaacaataaatgcatgtatcataatagtttatgattggcagtttagttcaatgtatatttttaatgtataaacattgtatgaattatgaatgtcatattgattttgatatatgtaacagaaaccaataatatatatataaacattgtatgaatattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="31666" stop="30105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31366" g_stop="31209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31208" i_stop="30785" i_length="424">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30784" g_stop="30405" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="536" r_length="380" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E350862" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31366" e_stop="31209"/>
          <exon e_start="30784" e_stop="30405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCAAAATTTCTCTATTATTTGGAAATTTCTTTCAACGTATAATTCATTTTTTTTCTCAAAAATTCAAGATTATTTTCATAGCTGCATATTTCAGTTCTAATGGATAACTTTGTGTCAATTTTAATTAAACATGGTGTAAAGTGGAATTTTTCGGGTTAGTTTTTAGTTATGATTTATTTATTTTTAATTATGAATTGTTGGTTTTATTTAGTTTTGTTGTTTTTTACATTTAAAACAGTGTTAAATTTTTTTTTGTTAACTATATTATTTGTAATACAATTTGTAATTTTTTTTTGAAAGAAACAGTATGTTCTGTATAGCGTACATGAAGTCTGAAGTTTATTTTTTTAGTGAATGAAATGTGTATGAAACATGTATCATTTGTGTATGAAATTTTTTTTAATAGTACAAAATTTTGTTTTTCCACAATCCCAATATTATAGACACTCTCTATATATTGAGTTTCTCATTTGACAAGATGAAACATATCCAATTGAAATATTATTTGACTGCTTTTACATGCCCAGTTGAAAGTTTGATAGATCATTTGGCTAAAGTATTGTGTGATTAAATTGCAGGTTAAAATTCTACCTGCCAAATATGTTATGAAGACGGACGATGATACTTTTGTAAGGATTGATGAAGTTCTATCTAGTCTCAAGGGAAAGGATCCTAATGGTCTATTATATGGTGGGATATCTTTTGAATGGTCTATAATGTATCAATGTTACAATTATTTTTGTATGAATTTTGTTTGAAATAAATTGCAACTTTATA-GAACTAGCTTAACAATAAATGCATGTATCACAATAGTTTATGATTGACAATATAGTTCAATGTATATTTTTAATATATAAACATTGTATGAATTATGAATGCCATATTGATTTTGATATATGTAACAGAAACCAATGATATATATATAAACATTGTATGAATATTGTATGAATAACATATA</genome_strand>
        <mrna_strand>CATTCCAAAGTTTCTCTATTATTTTGAAATTTCTTTCAACATATAATTCA-TTTTTTTCCCAAAAATTCAAGATTATTTTCATAGCTGCAT-TTTCAGTTCTGACGGATAACTTTGTGTCAATTTTAATTAAACATGGTGGAAAGTGGAATTCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATCCTACCT-CCAAATATGTTATGAAGACGGACGATGATGCTTTTGTAAGGATTGATAAAATTCTATCTAGTCTCAAGGGAAAGGATCCTAATGGTCTATTATATGGTGGGATATCTTTTGAATGGTCTATAACGAATCAATGTTACAATTATTTTTGTATGAATTTTGTTTGAAATAGATTGCAACTTTATATGAACTAATTTAACAATAAATGCATGTATCATAATAGTTTATGATTGGCAGTTTAGTTCAATGTATATTTTTAATGTATAAACATTGTATGAATTATGAATGTCATATTGATTTTGATATATGTAACAGAAACCAATAATATATATATAAACATTGTATGAATATTGTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352130" ref_strand="+" ref_description="SGN-E352130 [cTOS-13-C13]">
      <seq>aaaagtttacctttatattgagttaaattaaagctagataaattattagcattacaattattcttcattccaaagtttctctattattttgaaatttctttcaacatataattcatttttttcccaaaaattcaagattattttcatagctgcattttcagttctgacggataactttgtgtcaattttaattaaacatggtggaaagtggaattctttgggttaaaatcctacctccaaatatgttatgaagacggacgatgatgcttttgtaaggattgataaaattctatctagtctcaagggaaaggatcctaatggtctattatatggtgggatatcttttgaatggtctataacgaatcaatgttacaattatttttgtatgaattttgtttgaaatagattgcaactttatatgaactaatttaacaataaatgcatgtatcataatagtttatgattggcagtttagttcaatgtatatttttaatgtataaacattgtatgaattatgaatgtcatattgattttgatatatgtaacagaaaccaataatatatatataaacattgtatgaatattgtatgaacattgtatgaataacatatagaacactttatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="31728" stop="30112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31431" g_stop="31209" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31208" i_stop="30785" i_length="424">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30784" g_stop="30415" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="591" r_length="370" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E352130" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31431" e_stop="31209"/>
          <exon e_start="30784" e_stop="30415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTTACCTTTTTATTAAGTTAAATTAAAGCTAGATAAATTATTAGCATTACAATTATACTTCATTGCAAAATTTCTCTATTATTTGGAAATTTCTTTCAACGTATAATTCATTTTTTTTCTCAAAAATTCAAGATTATTTTCATAGCTGCATATTTCAGTTCTAATGGATAACTTTGTGTCAATTTTAATTAAACATGGTGTAAAGTGGAATTTTTCGGGTTAGTTTTTAGTTATGATTTATTTATTTTTAATTATGAATTGTTGGTTTTATTTAGTTTTGTTGTTTTTTACATTTAAAACAGTGTTAAATTTTTTTTTGTTAACTATATTATTTGTAATACAATTTGTAATTTTTTTTTGAAAGAAACAGTATGTTCTGTATAGCGTACATGAAGTCTGAAGTTTATTTTTTTAGTGAATGAAATGTGTATGAAACATGTATCATTTGTGTATGAAATTTTTTTTAATAGTACAAAATTTTGTTTTTCCACAATCCCAATATTATAGACACTCTCTATATATTGAGTTTCTCATTTGACAAGATGAAACATATCCAATTGAAATATTATTTGACTGCTTTTACATGCCCAGTTGAAAGTTTGATAGATCATTTGGCTAAAGTATTGTGTGATTAAATTGCAGGTTAAAATTCTACCTGCCAAATATGTTATGAAGACGGACGATGATACTTTTGTAAGGATTGATGAAGTTCTATCTAGTCTCAAGGGAAAGGATCCTAATGGTCTATTATATGGTGGGATATCTTTTGAATGGTCTATAATGTATCAATGTTACAATTATTTTTGTATGAATTTTGTTTGAAATAAATTGCAACTTTATA-GAACTAGCTTAACAATAAATGCATGTATCACAATAGTTTATGATTGACAATATAGTTCAATGTATATTTTTAATATATAAACATTGTATGAATTATGAATGCCATATTGATTTTGATATATGTAACAGAAACCAATGATATATATATAAACATTGTATGAATATTGTATGA</genome_strand>
        <mrna_strand>AAAAGTTTACCTTTATATTGAGTTAAATTAAAGCTAGATAAATTATTAGCATTACAATTATTCTTCATTCCAAAGTTTCTCTATTATTTTGAAATTTCTTTCAACATATAATTCA-TTTTTTTCCCAAAAATTCAAGATTATTTTCATAGCTGCAT-TTTCAGTTCTGACGGATAACTTTGTGTCAATTTTAATTAAACATGGTGGAAAGTGGAATTCTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATCCTACCT-CCAAATATGTTATGAAGACGGACGATGATGCTTTTGTAAGGATTGATAAAATTCTATCTAGTCTCAAGGGAAAGGATCCTAATGGTCTATTATATGGTGGGATATCTTTTGAATGGTCTATAACGAATCAATGTTACAATTATTTTTGTATGAATTTTGTTTGAAATAGATTGCAACTTTATATGAACTAATTTAACAATAAATGCATGTATCATAATAGTTTATGATTGGCAGTTTAGTTCAATGTATATTTTTAATGTATAAACATTGTATGAATTATGAATGTCATATTGATTTTGATATATGTAACAGAAACCAATAATATATATATAAACATTGTATGAATATTGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313449" ref_strand="+" ref_description="SGN-E313449 [cTOA-13-B21]">
      <seq>gaggacatcgaatctgggaagccagctgtaaggttactgtacgtgacaccagaattaattgcgacatctggatttatgtcaaaaatgacaaagattcatgctagaggattgttaaatctcattgccgttgatgaggcacattgcatctcttcatggggccatgacttcaagcctagctatcggaagctttcttcactgagaagtcatttcccaaatgtaccagtattggctttgacagcaactgctgtccctaaagttcagaaagatgtcatagagtcattgaatttgcaaaaccctctagtcctgaaatcatcgttcaaccggccaaatatctattatgaagttcgctataaagaccttttggatgatccatatgctgacgtgtgtaaattactaaaatcttgtggaaatgtgtgcgctattatttattgcctggaacgtactatgtgtgatgatcttgcgatccatataaccagcagcggcatttcttgtgctgcatatcatgctgggctgaacaataaaatgcggagctctgtcttggatgactggatttcttcaaaaacacaagtggttgttgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="48203" stop="45150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47903" g_stop="47769" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47768" i_stop="47681" i_length="88">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47680" g_stop="47646" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="170" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47645" i_stop="46820" i_length="826">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46819" g_stop="46736" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="254" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46735" i_stop="46493" i_length="243">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46492" g_stop="46404" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="343" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46403" i_stop="45768" i_length="636">
            <donor d_prob="0.404" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45767" g_stop="45615" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="496" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45614" i_stop="45536" i_length="79">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45535" g_stop="45450" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="582" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E313449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47903" e_stop="47769"/>
          <exon e_start="47680" e_stop="47646"/>
          <exon e_start="46819" e_stop="46736"/>
          <exon e_start="46492" e_stop="46404"/>
          <exon e_start="45767" e_stop="45615"/>
          <exon e_start="45535" e_stop="45450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAGGTTTTACTCCCGTCTCCATTTGCTTATGTCAGAAGTTTCTCCAACTATTTATCTGTTAATATTATCATTTTACTTTAACAAAATCCAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGTGCCTTCTCAATATATCATTGTTGTTGATGGTTGTGGTTAATTTACTGCACTTCTGTACTTTTTGGTTTAACATTGTTTATTTTATGGACATATTTTAGGCTTTATCCATTGTTCTTTGAGCTCGTAAACTAGAATAGTTTTCTTTGAAAAAGATAGTATGTTCCAATTTTAAATAGATTTTAAGAGCACTTTTCTGGAATGTCTAGTGGCGATGTACAACAACAACAACATACCCAATATAATCCTCACGCATAATAAAACACAAAATCACCGGTGGTAACAGAAAACGGAGAACAAGAAACCACGAGAATAGTGCTAACACTACTGGTAAGAAAGCAGGTACATATACGTTTCCCAAGCTTATCCAACAGGAAAGCGAGAGAACGTACAACTACCAACTAACCTTCTACACTAATCTGCGGCCTCCAAACTCTCCTATTGTAAAATGCCTGAGAAATCTCTCTTCCGTTCTCATCCTCAAATTTTGCATTTACAAGTGTGTTGAAAAAACAAATGCGTCAATGGTCACAACTTTAGTGTTTCGTTGATGCTTGCATTCTAGTTACAAATTGACTCTTCAGATCCTAAGGCACACCAGGTTTACCGGTATAATGTGCATATATGCTCGTGTCAAGTGGGATCATTAGCTTGATGTTAGACTTGCTATTGTTCTATCTACCTTTAAGCTCTACTGAAGTTTTTGTAAATAGGAGTTGTCCTTTGTCATTAGTGTTTCGACTTTTAACTTCTTCTCTTCGTTTTTCTTTACGTTTATGCCTTCAATCCTTGCACAATTCTCTTGGTTTATGTTTTTCCTCATTTAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAGTAAGTTTGCTTATGTGAATTTTCTTGAGATGTAAGGAATTACAATTTATACGTCAATGGAGATCAATCTCACTGTAACGGGGATTGTATGTGATCTTATAACTTCCCTCTGACTTTTCTTTCCCAATTCCAAATATAATTTTGATAATTTTCAGGTTAACAATTTTCTGTAGCTTATTTAGAAAATGATCATTGAAGAACCTTGATATATTTATTTTCTTGGACATTTTCCTTTCTCTGCAGAGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGGTCAGGTCTAAGGATCTCGGTTCCTTGATATAGTGCAAAAGACATGTCTTCATATGTAATTGATAAGCAGCCAACAACTAATCCATTTCTTAAACTGCCAATTCTTAAATCTACAAGGAATCAGCTTGCAGCAATTTACAGTAATGATTATATAATAACCAATTCTTTTTTTTTTTTGCTTTTCCTTGTTTGCATCCTGTTCTACTTTTAAAAATTGAGGGGAAAGAGGATGAGAAGATAAGAAGACAATTACTGAGAAAATATTGGTTCGATATGGCTTCATATGATTCTGTAGCTTTTTTTGAAATCATGGGACCAAATGCTCTAATTCTAATTTGCTGCATTTTCCTGTGTATATTGTATGGTTCTGTGTGTATCAGATGAAGCATCTATGGTCATTCATATGTACTAAATTCTGGTGAATCATTGTATCCTATTACCTTTAACTAATCAGGTTATGTAACCATATCAGCTATTACTCTTTGAATTATGAGCTTATTACCATACCAGTCATCACTATCTTATTACCTTTGACTATTTTATCACCTCTGCACCTACTTATGACTATCAGGCTATGTACTGTATCTGTCATCACTCTTGCTATTACATACCTGATCATATATCTCCATTTTGCAGTTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTGCTGGTAATGAGTGGTTCAGTTAAATTCCTTGCAATTTTATCTATGATACACTTTCCTGAAATGTACATTAACTTACTACTAGCATATCATGCTGGGCTGAACAATAAAATGCGGAGCTCTGTCTTGGATGACTGGATTTCTTCAAAAACACAAGTGGTTGTTGCAACT</genome_strand>
        <mrna_strand>GAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAG........................................................................................GCACATTGCATCTCTTCATGGGGCCATGACTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAA...................................................................................................................................................................................................................................................AGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTGCTG...............................................................................CATATCATGCTGGGCTGAACAATAAAATGCGGAGCTCTGTCTTGGATGACTGGATTTCTTCAAAAACACAAGTGGTTGTTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313347" ref_strand="+" ref_description="SGN-E313347 [cTOA-13-B15]">
      <seq>gaggacatcgaatctgggaagcgagctgttatgttactgtacgtgacaccagaattaattgcgacatctggatttatgtcaaaaatgacaaagattcatgctagaggattgttaaatctcattgccgttgatgaggcacattgcatctcttcatggggccatgacttcaggcctagctatcggaagctttcttcactgagaagtcatttcccaaatgtaccagtattggctttgacagcaactgctgtccctaaagttcagaaagatgtcatagagtcattgaatttgcaaaaccctctagtactgaaatcatcgttcaaccggccaaatatctattatgaagttcgctataaagaccttttggatgatccatatgctgacgtgtgtaaattactaaaatcttgtggaaatgtgtgcgctattatttattgcctggaacgtactatgtgtgatgatcttgcgatccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="48203" stop="45341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47903" g_stop="47769" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47768" i_stop="47681" i_length="88">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47680" g_stop="47646" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="170" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47645" i_stop="46820" i_length="826">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46819" g_stop="46736" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="254" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46735" i_stop="46493" i_length="243">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46492" g_stop="46404" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="343" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46403" i_stop="45768" i_length="636">
            <donor d_prob="0.404" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45767" g_stop="45641" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="470" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E313347" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47903" e_stop="47769"/>
          <exon e_start="47680" e_stop="47646"/>
          <exon e_start="46819" e_stop="46736"/>
          <exon e_start="46492" e_stop="46404"/>
          <exon e_start="45767" e_stop="45641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAGGTTTTACTCCCGTCTCCATTTGCTTATGTCAGAAGTTTCTCCAACTATTTATCTGTTAATATTATCATTTTACTTTAACAAAATCCAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGTGCCTTCTCAATATATCATTGTTGTTGATGGTTGTGGTTAATTTACTGCACTTCTGTACTTTTTGGTTTAACATTGTTTATTTTATGGACATATTTTAGGCTTTATCCATTGTTCTTTGAGCTCGTAAACTAGAATAGTTTTCTTTGAAAAAGATAGTATGTTCCAATTTTAAATAGATTTTAAGAGCACTTTTCTGGAATGTCTAGTGGCGATGTACAACAACAACAACATACCCAATATAATCCTCACGCATAATAAAACACAAAATCACCGGTGGTAACAGAAAACGGAGAACAAGAAACCACGAGAATAGTGCTAACACTACTGGTAAGAAAGCAGGTACATATACGTTTCCCAAGCTTATCCAACAGGAAAGCGAGAGAACGTACAACTACCAACTAACCTTCTACACTAATCTGCGGCCTCCAAACTCTCCTATTGTAAAATGCCTGAGAAATCTCTCTTCCGTTCTCATCCTCAAATTTTGCATTTACAAGTGTGTTGAAAAAACAAATGCGTCAATGGTCACAACTTTAGTGTTTCGTTGATGCTTGCATTCTAGTTACAAATTGACTCTTCAGATCCTAAGGCACACCAGGTTTACCGGTATAATGTGCATATATGCTCGTGTCAAGTGGGATCATTAGCTTGATGTTAGACTTGCTATTGTTCTATCTACCTTTAAGCTCTACTGAAGTTTTTGTAAATAGGAGTTGTCCTTTGTCATTAGTGTTTCGACTTTTAACTTCTTCTCTTCGTTTTTCTTTACGTTTATGCCTTCAATCCTTGCACAATTCTCTTGGTTTATGTTTTTCCTCATTTAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAGTAAGTTTGCTTATGTGAATTTTCTTGAGATGTAAGGAATTACAATTTATACGTCAATGGAGATCAATCTCACTGTAACGGGGATTGTATGTGATCTTATAACTTCCCTCTGACTTTTCTTTCCCAATTCCAAATATAATTTTGATAATTTTCAGGTTAACAATTTTCTGTAGCTTATTTAGAAAATGATCATTGAAGAACCTTGATATATTTATTTTCTTGGACATTTTCCTTTCTCTGCAGAGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGGTCAGGTCTAAGGATCTCGGTTCCTTGATATAGTGCAAAAGACATGTCTTCATATGTAATTGATAAGCAGCCAACAACTAATCCATTTCTTAAACTGCCAATTCTTAAATCTACAAGGAATCAGCTTGCAGCAATTTACAGTAATGATTATATAATAACCAATTCTTTTTTTTTTTTGCTTTTCCTTGTTTGCATCCTGTTCTACTTTTAAAAATTGAGGGGAAAGAGGATGAGAAGATAAGAAGACAATTACTGAGAAAATATTGGTTCGATATGGCTTCATATGATTCTGTAGCTTTTTTTGAAATCATGGGACCAAATGCTCTAATTCTAATTTGCTGCATTTTCCTGTGTATATTGTATGGTTCTGTGTGTATCAGATGAAGCATCTATGGTCATTCATATGTACTAAATTCTGGTGAATCATTGTATCCTATTACCTTTAACTAATCAGGTTATGTAACCATATCAGCTATTACTCTTTGAATTATGAGCTTATTACCATACCAGTCATCACTATCTTATTACCTTTGACTATTTTATCACCTCTGCACCTACTTATGACTATCAGGCTATGTACTGTATCTGTCATCACTCTTGCTATTACATACCTGATCATATATCTCCATTTTGCAGTTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATAT</genome_strand>
        <mrna_strand>GAGGACATCGAATCTGGGAAGCGAGCTGTTATGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAG........................................................................................GCACATTGCATCTCTTCATGGGGCCATGACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAA...................................................................................................................................................................................................................................................AGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTACTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="73271" stop="74530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73570" g_stop="74230" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73570" e_stop="74230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTCGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCCCCTAACTCTGTTGGAGCCATTCTATAAGGAGGTATGGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATTCGGTGGCATACCATGAAGGTCTGCAGGAAACACATCTGGAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAAAAAGGAGATGATAAGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCAAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAATCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTAGGCCAAGCAATTCACAATGTAAATTAAGACCAGTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="74567" stop="73313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74274" g_stop="73613" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74274" e_stop="73613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACCCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGGCCTACCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGATTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTTGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCTTATCATCTCCTTTTTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTCCAGATGTGTTTCCTGCAGACCTTCATGGTATGCCACCGAATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAACAGAGTTAGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCGAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGA-TCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGT-TCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="73673" stop="74603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73973" g_stop="74303" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73973" e_stop="74303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCAAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAATCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTAGGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGGTCAATAATACAAAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="74141" stop="75443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74444" g_stop="75143" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="720" r_length="700" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74444" e_stop="75143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACACAGTTGGGTGGCATACCTGGAGAGTGCACGAAACTTAGCCTCATATGCACTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAATGCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCTAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCATAAACTCAACACCAAACCGTTCCACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGTCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGACGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTTTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTTCCCTAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>TGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="74141" stop="75390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74444" g_stop="75090" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="664" r_length="647" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74444" e_stop="75090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACACAGTTGGGTGGCATACCTGGAGAGTGCACGAAACTTAGCCTCATATGCACTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAATGCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCTAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCATAAACTCAACACCAAACCGTTCCACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGTCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGACGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTTTGGGGTAGGTTGGGGTGGTAATT-CCTCATTCTGTACTTGTTCATTTTCCCTATCCTCCCCTTCT</genome_strand>
        <mrna_strand>TGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="-" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="75447" stop="74294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75147" g_stop="74594" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75147" e_stop="74594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATAGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAAAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGTCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGACTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTGGAACGGTTTGGTGTTGAGTTTATGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTAGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0162L12-wpjS5/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0162L12.2" temp_strand="+" temp_description="C07HBa0162L12.2  AC212634.2 htgs_phase:1 submitted_to_sgn_as:gi|159145072|gb|AC212634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0162L12, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces">
        <position start="74482" stop="75515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74782" g_stop="75214" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0162L12.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0162L12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74782" e_stop="75214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGTCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGACGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTTTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTTCCCTATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGAACGTCCTCCCACGACCTCTACCACAGCCTCTTGTCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11223" PGL_stop="16057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11223" e_stop="11441"/>
            <exon e_start="13032" e_stop="13259"/>
            <exon e_start="14120" e_stop="14266"/>
            <exon e_start="14699" e_stop="14857"/>
            <exon e_start="15150" e_stop="15345"/>
            <exon e_start="15789" e_stop="16057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.058" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11223" e_stop="11441" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.058">
            <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13032" e_stop="13259" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.870">
            <gDNA_intron_boundary i_start="13260" i_stop="14119" i_length="860"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14120" e_stop="14266" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.862">
            <gDNA_intron_boundary i_start="14267" i_stop="14698" i_length="432"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="14699" e_stop="14857" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="14858" i_stop="15149" i_length="292"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15150" e_stop="15345" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.904">
            <gDNA_intron_boundary i_start="15346" i_stop="15788" i_length="443"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15789" e_stop="16057" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11223" stop="11441"/>
              <exon start="13032" stop="13259"/>
              <exon start="14120" stop="14266"/>
              <exon start="14699" stop="14857"/>
              <exon start="15150" stop="15159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11224" stop="11441"/>
              <exon start="13032" stop="13259"/>
              <exon start="14120" stop="14213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11229" stop="11441"/>
              <exon start="13032" stop="13229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11262" stop="11441"/>
              <exon start="13032" stop="13157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14848" stop="14857"/>
              <exon start="15150" stop="15345"/>
              <exon start="15789" stop="16057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTCTCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG : CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG : ATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTGAGATCGAAG : GAAGTGTAGGTATTCCTCTCAACTTTACCCAAAAAGGAGGAGATTTAAAAGCCTTGGGAGAAAAAAATAGTTCAAGAGAACAGGAAAATGAAGTCGCTGCTCCACTGGATTCTGCAGGCGTCGCTATAGAAAATATGACATCTGATTCAAAAGATCATG : GTTGTAATTATGCTAAAGGTAGATGGGTCACAGATGATAGTCGGCCTTTATATTCTGGATTTCGCTGCAAGCGGTGGTTGTCAGCCATGTGGGCTTGCCGCTTGACACAGCGTACGGATTTTGAATACGAGAAACTACGTTGGAGACCAAGGGATTGCGAGATCGAAGAGTTTACAGGTGTTAAATTCCTGAAAAG : GATGGAGAACAAAACTCTGGCCTTCATTGGGGATTCCCTTGGCAGACAACAATTCCAGTCGCTTATGTGTATGATTACTGGTGGTGAAGACAGACCTGATGTTCTTGACGTGGGACGTGAATATGGTCTTGTAAAGGCTCGTCATGCTGTACGACCTGATGGATGGGCTTATCGATTTCCAAGGACCCAAACAACTATTCTTTACTATTGGTCTGCTAGTTTGTGTAACTTGACACCCATTAATGCCTCTAACCCTCTTACTGATTATG</gDNA_template>
            <first_frame> L  L  S  V  S  P  L  A  L  P  S  S  P  A  I  F  F  T  F  K  L  S  I  L  S  *  F  F  L  L  N  F  N  F  A  S  L  L  H  K  I  F  E  T  E  F  N  F  F  V  I  C  *  R  N  Y  R  F  *  S  N  R  R  I  R  R  L  D  F  R  R  F  Q  :  L  F  Q  I  L  N  *  S  E  Q  N  I  H  Y  A  G  M  T  S  S  T  *  D  P  M  H  *  G  *  R  E  V  *  R  F  H  *  S  L  S  S  L  L  D  L  S  A  P  V  L  L  F  W  H  T  *  K  A  L  F  S  L  I  G  H  H  L  K  T  V  S  S  R  F  L  Q  :  I  I  K  *  K  M  K  K  F  *  K  K  E  I  D  Q  G  N  Q  K  K  M  *  T  L  N  L  P  F  H  T  L  Q  *  R  I  R  *  L  K  N  Q  L  L  I  L  R  S  K  :  E  V  *  V  F  L  S  T  L  P  K  K  E  E  I  *  K  P  W  E  K  K  I  V  Q  E  N  R  K  M  K  S  L  L  H  W  I  L  Q  A  S  L  *  K  I  *  H  L  I  Q  K  I  M  :  V  V  I  M  L  K  V  D  G  S  Q  M  I  V  G  L  Y  I  L  D  F  A  A  S  G  G  C  Q  P  C  G  L  A  A  *  H  S  V  R  I  L  N  T  R  N  Y  V  G  D  Q  G  I  A  R  S  K  S  L  Q  V  L  N  S  *  K   : G  W  R  T  K  L  W  P  S  L  G  I  P  L  A  D  N  N  S  S  R  L  C  V  *  L  L  V  V  K  T  D  L  M  F  L  T  W  D  V  N  M  V  L  *  R  L  V  M  L  Y  D  L  M  D  G  L  I  D  F  Q  G  P  K  Q  L  F  F  T  I  G  L  L  V  C  V  T  *  H  P  L  M  P  L  T  L  L  L  I  M </first_frame>
            <second_frame>  S  S  L  F  L  H  W  L  F  L  L  L  Q  L  S  S  S  P  S  N  L  V  F  *  V  N  F  F  F  *  T  S  I  L  H  H  Y  C  I  K  F  S  K  L  N  S  I  F  L  L  F  A  K  E  I  I  V  S  D  Q  I  G  G  F  G  G  *  I  S  G  V  F  S :   Y  F  R  F  *  T  E  V  N  R  T  S  I  M  L  E  *  L  Q  V  H  K  I  L  C  I  E  D  E  G  R  F  K  G  S  T  D  L  S  H  P  Y  W  I  C  L  R  Q  Y  Y  Y  F  G  I  R  E  K  P  F  S  L  L  L  D  I  I  S  R  P  C  L  P  D  F  S  R :   L  *  S  E  R  *  R  S  F  K  R  K  K  *  I  R  A  I  R  R  K  C  E  L  *  I  C  H  F  T  L  F  N  E  G  *  G  D  *  R  T  N  Y  *  Y  *  D  R  R :   K  C  R  Y  S  S  Q  L  Y  P  K  R  R  R  F  K  S  L  G  R  K  K  *  F  K  R  T  G  K  *  S  R  C  S  T  G  F  C  R  R  R  Y  R  K  Y  D  I  *  F  K  R  S  W :   L  *  L  C  *  R  *  M  G  H  R  *  *  S  A  F  I  F  W  I  S  L  Q  A  V  V  V  S  H  V  G  L  P  L  D  T  A  Y  G  F  *  I  R  E  T  T  L  E  T  K  G  L  R  D  R  R  V  Y  R  C  *  I  P  E  K  :  D  G  E  Q  N  S  G  L  H  W  G  F  P  W  Q  T  T  I  P  V  A  Y  V  Y  D  Y  W  W  *  R  Q  T  *  C  S  *  R  G  T  *  I  W  S  C  K  G  S  S  C  C  T  T  *  W  M  G  L  S  I  S  K  D  P  N  N  Y  S  L  L  L  V  C  *  F  V  *  L  D  T  H  *  C  L  *  P  S  Y  *  L   </second_frame>
            <third_frame>   P  L  C  F  S  I  G  S  S  F  F  S  S  Y  L  L  H  L  Q  T  *  Y  S  E  L  I  F  S  S  K  L  Q  F  C  I  I  I  A  *  N  F  R  N  *  I  Q  F  F  C  Y  L  L  K  K  L  S  F  L  I  K  *  E  D  S  E  V  R  F  Q  A  F  S   : A  I  S  D  S  K  L  K  *  T  E  H  P  L  C  W  N  D  F  K  Y  I  R  S  Y  A  L  R  M  K  G  G  L  K  V  P  L  I  S  L  I  L  I  G  F  V  C  A  S  I  I  I  L  A  Y  V  K  S  P  F  L  S  Y  W  T  S  S  Q  D  R  V  F  Q  I  S  P   : D  Y  K  V  K  D  E  E  V  L  K  E  R  N  R  S  G  Q  S  E  E  N  V  N  F  E  S  A  I  S  H  S  S  M  K  D  K  V  T  E  E  P  I  T  N  T  E  I  E   : G  S  V  G  I  P  L  N  F  T  Q  K  G  G  D  L  K  A  L  G  E  K  N  S  S  R  E  Q  E  N  E  V  A  A  P  L  D  S  A  G  V  A  I  E  N  M  T  S  D  S  K  D  H   : G  C  N  Y  A  K  G  R  W  V  T  D  D  S  R  P  L  Y  S  G  F  R  C  K  R  W  L  S  A  M  W  A  C  R  L  T  Q  R  T  D  F  E  Y  E  K  L  R  W  R  P  R  D  C  E  I  E  E  F  T  G  V  K  F  L  K  R :   M  E  N  K  T  L  A  F  I  G  D  S  L  G  R  Q  Q  F  Q  S  L  M  C  M  I  T  G  G  E  D  R  P  D  V  L  D  V  G  R  E  Y  G  L  V  K  A  R  H  A  V  R  P  D  G  W  A  Y  R  F  P  R  T  Q  T  T  I  L  Y  Y  W  S  A  S  L  C  N  L  T  P  I  N  A  S  N  P  L  T  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13058" stop="13259"/>
                    <exon start="14120" stop="14266"/>
                    <exon start="14699" stop="14857"/>
                    <exon start="15150" stop="15345"/>
                    <exon start="15789" stop="16056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEHPLCWNDFKYIRSYALRMKGGLKVPLISLILIGFVCASIIILAYVKSPFLSYWTSSQDRVFQISPDYKVKDEEVLKERNRSGQSEENVNFESAISHSSMKDKVTEEPITNTEIEGSVGIPLNFTQKGGDLKALGEKNSSREQENEVAAPLDSAGVAIENMTSDSKDHGCNYAKGRWVTDDSRPLYSGFRCKRWLSAMWACRLTQRTDFEYEKLRWRPRDCEIEEFTGVKFLKRMENKTLAFIGDSLGRQQFQSLMCMITGGEDRPDVLDVGREYGLVKARHAVRPDGWAYRFPRTQTTILYYWSASLCNLTPINASNPLTDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11229" e_stop="11441"/>
            <exon e_start="13032" e_stop="13259"/>
            <exon e_start="14117" e_stop="14257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.058" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.286" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11229" e_stop="11441" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.058">
            <gDNA_intron_boundary i_start="11442" i_stop="13031" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13032" e_stop="13259" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.286">
            <gDNA_intron_boundary i_start="13260" i_stop="14116" i_length="857"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14117" e_stop="14257" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11229" stop="11441"/>
              <exon start="13032" stop="13229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11241" stop="11441"/>
              <exon start="13032" stop="13259"/>
              <exon start="14117" stop="14212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11262" stop="11441"/>
              <exon start="13032" stop="13157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11280" stop="11441"/>
              <exon start="13032" stop="13259"/>
              <exon start="14117" stop="14257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTTTCTCCATTGGCTCTTCCTTCTTCTCCAGCTATCTTCTTCACCTTCAAACTTAGTATTCTGAGTTAATTTTTTCTTCTAAACTTCAATTTTGCATCATTATTGCATAAAATTTTCGAAACTGAATTCAATTTTTTTGTTATTTGCTAAAGAAATTATCGTTTCTGATCAAATAGGAGGATTCGGAGGTTAGATTTCAGGCGTTTTCAG : CTATTTCAGATTCTAAACTGAAGTGAACAGAACATCCATTATGCTGGAATGACTTCAAGTACATAAGATCCTATGCATTGAGGATGAAGGGAGGTTTAAAGGTTCCACTGATCTCTCTCATCCTTATTGGATTTGTCTGCGCCAGTATTATTATTTTGGCATACGTGAAAAGCCCTTTTCTCTCTTATTGGACATCATCTCAAGACCGTGTCTTCCAGATTTCTCCAG : CAGATTATAAAGTGAAAGATGAAGAAGTTTTAAAAGAAAGAAATAGATCAGGGCAATCAGAAGAAAATGTGAACTTTGAATCTGCCATTTCACACTCTTCAATGAAGGATAAGGTGACTGAAGAACCAATTACTAATACTG</gDNA_template>
            <first_frame> S  V  S  P  L  A  L  P  S  S  P  A  I  F  F  T  F  K  L  S  I  L  S  *  F  F  L  L  N  F  N  F  A  S  L  L  H  K  I  F  E  T  E  F  N  F  F  V  I  C  *  R  N  Y  R  F  *  S  N  R  R  I  R  R  L  D  F  R  R  F  Q  :  L  F  Q  I  L  N  *  S  E  Q  N  I  H  Y  A  G  M  T  S  S  T  *  D  P  M  H  *  G  *  R  E  V  *  R  F  H  *  S  L  S  S  L  L  D  L  S  A  P  V  L  L  F  W  H  T  *  K  A  L  F  S  L  I  G  H  H  L  K  T  V  S  S  R  F  L  Q  :  Q  I  I  K  *  K  M  K  K  F  *  K  K  E  I  D  Q  G  N  Q  K  K  M  *  T  L  N  L  P  F  H  T  L  Q  *  R  I  R  *  L  K  N  Q  L  L  I  L </first_frame>
            <second_frame>  L  F  L  H  W  L  F  L  L  L  Q  L  S  S  S  P  S  N  L  V  F  *  V  N  F  F  F  *  T  S  I  L  H  H  Y  C  I  K  F  S  K  L  N  S  I  F  L  L  F  A  K  E  I  I  V  S  D  Q  I  G  G  F  G  G  *  I  S  G  V  F  S :   Y  F  R  F  *  T  E  V  N  R  T  S  I  M  L  E  *  L  Q  V  H  K  I  L  C  I  E  D  E  G  R  F  K  G  S  T  D  L  S  H  P  Y  W  I  C  L  R  Q  Y  Y  Y  F  G  I  R  E  K  P  F  S  L  L  L  D  I  I  S  R  P  C  L  P  D  F  S  S :   R  L  *  S  E  R  *  R  S  F  K  R  K  K  *  I  R  A  I  R  R  K  C  E  L  *  I  C  H  F  T  L  F  N  E  G  *  G  D  *  R  T  N  Y  *  Y   </second_frame>
            <third_frame>   C  F  S  I  G  S  S  F  F  S  S  Y  L  L  H  L  Q  T  *  Y  S  E  L  I  F  S  S  K  L  Q  F  C  I  I  I  A  *  N  F  R  N  *  I  Q  F  F  C  Y  L  L  K  K  L  S  F  L  I  K  *  E  D  S  E  V  R  F  Q  A  F  S   : A  I  S  D  S  K  L  K  *  T  E  H  P  L  C  W  N  D  F  K  Y  I  R  S  Y  A  L  R  M  K  G  G  L  K  V  P  L  I  S  L  I  L  I  G  F  V  C  A  S  I  I  I  L  A  Y  V  K  S  P  F  L  S  Y  W  T  S  S  Q  D  R  V  F  Q  I  S  P   : A  D  Y  K  V  K  D  E  E  V  L  K  E  R  N  R  S  G  Q  S  E  E  N  V  N  F  E  S  A  I  S  H  S  S  M  K  D  K  V  T  E  E  P  I  T  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13058" stop="13259"/>
                    <exon start="14117" stop="14256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEHPLCWNDFKYIRSYALRMKGGLKVPLISLILIGFVCASIIILAYVKSPFLSYWTSSQDRVFQISPADYKVKDEEVLKERNRSGQSEENVNFESAISHSSMKDKVTEEPITNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17005" PGL_stop="16829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17005" e_stop="16829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="17005" e_stop="16829" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17005" stop="16829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTTGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGACTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  L  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  T  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  *  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  L  Q  I  L  S  H  M  H  E  A  Y  P  P  I  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  D  S  K  F  Y  H  T  C  T  K  H  I  L  Q  Y  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0162L12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25789" PGL_stop="26368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25789" e_stop="26368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25789" e_stop="26368" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25789" stop="26368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATCCTAAAATTTTACCTACAAATTCCTCAATCTTCAAACCCCACTTGAAAAAATTTTCTCCAAATTCCATCAATAAGATTCAAAGATTTTTTTGTCCTTTTCCCCTGTTTAGTTTGTGGAGGGTTTTCAAGAATTCAATAAATGGATACAGACAATCGGTTTTACTGTCGGAAACGGTCCAGGTTTCGTGGAATTTTCAATGGGCTTTGTTTGTCGGTATTGGTTGTTTTCTTCTTCCGTAGAGAAGATGTTGTTCAAAGTCCACTTTCCAAGAAATCTTTCAAAATTAGTGCTGTTAGAAAGGAAACGAGTTTGAGTTATCATCATTTGGGTGAAAGCAGGGATATCAAATTATGTGGTGGGTTGTATAAACATCAAGGTTACAGTACAAAATGTGACTACTTGAAGGCAAATCCTCATTGTAATTCAGGGGGTTTCTTGAATTATCTTTTCTTCTTTTACTGTACCTGTGAAGGTTTTAGTATTTTTGGATATGTCACTCTTGCTATTTGGTTGATTTCTTTGTTCTATCTTTTGGGAAATACTGCTGCTGATTACTTCTGTTGTTGTCTTGAAAA</gDNA_template>
            <first_frame> I  S  *  N  F  T  Y  K  F  L  N  L  Q  T  P  L  E  K  I  F  S  K  F  H  Q  *  D  S  K  I  F  L  S  F  S  P  V  *  F  V  E  G  F  Q  E  F  N  K  W  I  Q  T  I  G  F  T  V  G  N  G  P  G  F  V  E  F  S  M  G  F  V  C  R  Y  W  L  F  S  S  S  V  E  K  M  L  F  K  V  H  F  P  R  N  L  S  K  L  V  L  L  E  R  K  R  V  *  V  I  I  I  W  V  K  A  G  I  S  N  Y  V  V  G  C  I  N  I  K  V  T  V  Q  N  V  T  T  *  R  Q  I  L  I  V  I  Q  G  V  S  *  I  I  F  S  S  F  T  V  P  V  K  V  L  V  F  L  D  M  S  L  L  L  F  G  *  F  L  C  S  I  F  W  E  I  L  L  L  I  T  S  V  V  V  L  K  </first_frame>
            <second_frame>  Y  P  K  I  L  P  T  N  S  S  I  F  K  P  H  L  K  K  F  S  P  N  S  I  N  K  I  Q  R  F  F  C  P  F  P  L  F  S  L  W  R  V  F  K  N  S  I  N  G  Y  R  Q  S  V  L  L  S  E  T  V  Q  V  S  W  N  F  Q  W  A  L  F  V  G  I  G  C  F  L  L  P  *  R  R  C  C  S  K  S  T  F  Q  E  I  F  Q  N  *  C  C  *  K  G  N  E  F  E  L  S  S  F  G  *  K  Q  G  Y  Q  I  M  W  W  V  V  *  T  S  R  L  Q  Y  K  M  *  L  L  E  G  K  S  S  L  *  F  R  G  F  L  E  L  S  F  L  L  L  L  Y  L  *  R  F  *  Y  F  W  I  C  H  S  C  Y  L  V  D  F  F  V  L  S  F  G  K  Y  C  C  *  L  L  L  L  L  S  *  K </second_frame>
            <third_frame>   I  L  K  F  Y  L  Q  I  P  Q  S  S  N  P  T  *  K  N  F  L  Q  I  P  S  I  R  F  K  D  F  F  V  L  F  P  C  L  V  C  G  G  F  S  R  I  Q  *  M  D  T  D  N  R  F  Y  C  R  K  R  S  R  F  R  G  I  F  N  G  L  C  L  S  V  L  V  V  F  F  F  R  R  E  D  V  V  Q  S  P  L  S  K  K  S  F  K  I  S  A  V  R  K  E  T  S  L  S  Y  H  H  L  G  E  S  R  D  I  K  L  C  G  G  L  Y  K  H  Q  G  Y  S  T  K  C  D  Y  L  K  A  N  P  H  C  N  S  G  G  F  L  N  Y  L  F  F  F  Y  C  T  C  E  G  F  S  I  F  G  Y  V  T  L  A  I  W  L  I  S  L  F  Y  L  L  G  N  T  A  A  D  Y  F  C  C  C  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25932" stop="26366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDTDNRFYCRKRSRFRGIFNGLCLSVLVVFFFRREDVVQSPLSKKSFKISAVRKETSLSYHHLGESRDIKLCGGLYKHQGYSTKCDYLKANPHCNSGGFLNYLFFFYCTCEGFSIFGYVTLAIWLISLFYLLGNTAADYFCCCLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31431" PGL_stop="30405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31431" e_stop="31209"/>
            <exon e_start="30784" e_stop="30405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.924"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="31431" e_stop="31209" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31208" i_stop="30785" i_length="424"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="30784" e_stop="30405" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31431" stop="31209"/>
              <exon start="30784" stop="30415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31366" stop="31209"/>
              <exon start="30784" stop="30405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTTACCTTTTTATTAAGTTAAATTAAAGCTAGATAAATTATTAGCATTACAATTATACTTCATTGCAAAATTTCTCTATTATTTGGAAATTTCTTTCAACGTATAATTCATTTTTTTTCTCAAAAATTCAAGATTATTTTCATAGCTGCATATTTCAGTTCTAATGGATAACTTTGTGTCAATTTTAATTAAACATGGTGTAAAGTGGAATTTTTCGG : GTTAAAATTCTACCTGCCAAATATGTTATGAAGACGGACGATGATACTTTTGTAAGGATTGATGAAGTTCTATCTAGTCTCAAGGGAAAGGATCCTAATGGTCTATTATATGGTGGGATATCTTTTGAATGGTCTATAATGTATCAATGTTACAATTATTTTTGTATGAATTTTGTTTGAAATAAATTGCAACTTTATAGAACTAGCTTAACAATAAATGCATGTATCACAATAGTTTATGATTGACAATATAGTTCAATGTATATTTTTAATATATAAACATTGTATGAATTATGAATGCCATATTGATTTTGATATATGTAACAGAAACCAATGATATATATATAAACATTGTATGAATATTGTATGAATAACATATA</gDNA_template>
            <first_frame> R  S  L  P  F  Y  *  V  K  L  K  L  D  K  L  L  A  L  Q  L  Y  F  I  A  K  F  L  Y  Y  L  E  I  S  F  N  V  *  F  I  F  F  L  K  N  S  R  L  F  S  *  L  H  I  S  V  L  M  D  N  F  V  S  I  L  I  K  H  G  V  K  W  N  F  S   : G  *  N  S  T  C  Q  I  C  Y  E  D  G  R  *  Y  F  C  K  D  *  *  S  S  I  *  S  Q  G  K  G  S  *  W  S  I  I  W  W  D  I  F  *  M  V  Y  N  V  S  M  L  Q  L  F  L  Y  E  F  C  L  K  *  I  A  T  L  *  N  *  L  N  N  K  C  M  Y  H  N  S  L  *  L  T  I  *  F  N  V  Y  F  *  Y  I  N  I  V  *  I  M  N  A  I  L  I  L  I  Y  V  T  E  T  N  D  I  Y  I  N  I  V  *  I  L  Y  E  *  H  I </first_frame>
            <second_frame>  G  V  Y  L  F  I  K  L  N  *  S  *  I  N  Y  *  H  Y  N  Y  T  S  L  Q  N  F  S  I  I  W  K  F  L  S  T  Y  N  S  F  F  F  S  K  I  Q  D  Y  F  H  S  C  I  F  Q  F  *  W  I  T  L  C  Q  F  *  L  N  M  V  *  S  G  I  F  R  :  V  K  I  L  P  A  K  Y  V  M  K  T  D  D  D  T  F  V  R  I  D  E  V  L  S  S  L  K  G  K  D  P  N  G  L  L  Y  G  G  I  S  F  E  W  S  I  M  Y  Q  C  Y  N  Y  F  C  M  N  F  V  *  N  K  L  Q  L  Y  R  T  S  L  T  I  N  A  C  I  T  I  V  Y  D  *  Q  Y  S  S  M  Y  I  F  N  I  *  T  L  Y  E  L  *  M  P  Y  *  F  *  Y  M  *  Q  K  P  M  I  Y  I  *  T  L  Y  E  Y  C  M  N  N  I   </second_frame>
            <third_frame>   E  F  T  F  L  L  S  *  I  K  A  R  *  I  I  S  I  T  I  I  L  H  C  K  I  S  L  L  F  G  N  F  F  Q  R  I  I  H  F  F  S  Q  K  F  K  I  I  F  I  A  A  Y  F  S  S  N  G  *  L  C  V  N  F  N  *  T  W  C  K  V  E  F  F  G :   L  K  F  Y  L  P  N  M  L  *  R  R  T  M  I  L  L  *  G  L  M  K  F  Y  L  V  S  R  E  R  I  L  M  V  Y  Y  M  V  G  Y  L  L  N  G  L  *  C  I  N  V  T  I  I  F  V  *  I  L  F  E  I  N  C  N  F  I  E  L  A  *  Q  *  M  H  V  S  Q  *  F  M  I  D  N  I  V  Q  C  I  F  L  I  Y  K  H  C  M  N  Y  E  C  H  I  D  F  D  I  C  N  R  N  Q  *  Y  I  Y  K  H  C  M  N  I  V  *  I  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31223" stop="31209"/>
                    <exon start="30784" stop="30605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGIFRVKILPAKYVMKTDDDTFVRIDEVLSSLKGKDPNGLLYGGISFEWSIMYQCYNYFCMNFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47903" PGL_stop="45450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47903" e_stop="47769"/>
            <exon e_start="47680" e_stop="47646"/>
            <exon e_start="46819" e_stop="46736"/>
            <exon e_start="46492" e_stop="46404"/>
            <exon e_start="45767" e_stop="45615"/>
            <exon e_start="45535" e_stop="45450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.404" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.687" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47903" e_stop="47769" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47768" i_stop="47681" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47680" e_stop="47646" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.971">
            <gDNA_intron_boundary i_start="47645" i_stop="46820" i_length="826"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46819" e_stop="46736" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46735" i_stop="46493" i_length="243"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46492" e_stop="46404" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.404" acc_prob="0.977">
            <gDNA_intron_boundary i_start="46403" i_stop="45768" i_length="636"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45767" e_stop="45615" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.920" acc_prob="0.687">
            <gDNA_intron_boundary i_start="45614" i_stop="45536" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45535" e_stop="45450" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47903" stop="47769"/>
              <exon start="47680" stop="47646"/>
              <exon start="46819" stop="46736"/>
              <exon start="46492" stop="46404"/>
              <exon start="45767" stop="45615"/>
              <exon start="45535" stop="45450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47903" stop="47769"/>
              <exon start="47680" stop="47646"/>
              <exon start="46819" stop="46736"/>
              <exon start="46492" stop="46404"/>
              <exon start="45767" stop="45641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAG : GCACATTGCATCTCTTCATGGGGCCATGACTTCAG : GCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAA : AGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAG : TTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTGCTG : CATATCATGCTGGGCTGAACAATAAAATGCGGAGCTCTGTCTTGGATGACTGGATTTCTTCAAAAACACAAGTGGTTGTTGCAACT</gDNA_template>
            <first_frame> E  D  I  E  S  G  K  P  A  V  R  L  L  Y  V  T  P  E  L  I  A  T  S  G  F  M  S  K  M  T  K  I  H  A  R  G  L  L  N  L  I  A  V  D  E  :  A  H  C  I  S  S  W  G  H  D  F  R :   P  S  Y  R  K  L  S  S  L  R  S  H  F  P  N  V  P  V  L  A  L  T  A  T  A  V  P  K :   V  Q  K  D  V  I  E  S  L  N  L  Q  N  P  L  V  L  K  S  S  F  N  R  P  N  I  Y  Y  E   : V  R  Y  K  D  L  L  D  D  P  Y  A  D  V  C  K  L  L  K  S  C  G  N  V  C  A  I  I  Y  C  L  E  R  T  M  C  D  D  L  A  I  H  I  T  S  S  G  I  S  C  A   : A  Y  H  A  G  L  N  N  K  M  R  S  S  V  L  D  D  W  I  S  S  K  T  Q  V  V  V  A  T </first_frame>
            <second_frame>  R  T  S  N  L  G  S  Q  L  *  G  Y  C  T  *  H  Q  N  *  L  R  H  L  D  L  C  Q  K  *  Q  R  F  M  L  E  D  C  *  I  S  L  P  L  M  R :   H  I  A  S  L  H  G  A  M  T  S   : G  L  A  I  G  S  F  L  H  *  E  V  I  S  Q  M  Y  Q  Y  W  L  *  Q  Q  L  L  S  L   : K  F  R  K  M  S  *  S  H  *  I  C  K  T  L  *  S  *  N  H  R  S  T  G  Q  I  S  I  M  K  :  F  A  I  K  T  F  W  M  I  H  M  L  T  C  V  N  Y  *  N  L  V  E  M  C  A  L  L  F  I  A  W  N  V  L  C  V  M  I  L  R  S  I  *  P  A  A  A  F  L  V  L  :  H  I  M  L  G  *  T  I  K  C  G  A  L  S  W  M  T  G  F  L  Q  K  H  K  W  L  L  Q   </second_frame>
            <third_frame>   G  H  R  I  W  E  A  S  C  K  V  T  V  R  D  T  R  I  N  C  D  I  W  I  Y  V  K  N  D  K  D  S  C  *  R  I  V  K  S  H  C  R  *  *   : G  T  L  H  L  F  M  G  P  *  L  Q  :  A  *  L  S  E  A  F  F  T  E  K  S  F  P  K  C  T  S  I  G  F  D  S  N  C  C  P  *  :  S  S  E  R  C  H  R  V  I  E  F  A  K  P  S  S  P  E  I  I  V  Q  P  A  K  Y  L  L  *  S :   S  L  *  R  P  F  G  *  S  I  C  *  R  V  *  I  T  K  I  L  W  K  C  V  R  Y  Y  L  L  P  G  T  Y  Y  V  *  *  S  C  D  P  Y  N  Q  Q  R  H  F  L  C  C :   I  S  C  W  A  E  Q  *  N  A  E  L  C  L  G  *  L  D  F  F  K  N  T  S  G  C  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47903" stop="47769"/>
                    <exon start="47680" stop="47646"/>
                    <exon start="46819" stop="46736"/>
                    <exon start="46492" stop="46404"/>
                    <exon start="45767" stop="45615"/>
                    <exon start="45535" stop="45450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDIESGKPAVRLLYVTPELIATSGFMSKMTKIHARGLLNLIAVDEAHCISSWGHDFRPSYRKLSSLRSHFPNVPVLALTATAVPKVQKDVIESLNLQNPLVLKSSFNRPNIYYEVRYKDLLDDPYADVCKLLKSCGNVCAIIYCLERTMCDDLAIHITSSGISCAAYHAGLNNKMRSSVLDDWISSKTQVVVAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="73570" PGL_stop="74303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73570" e_stop="74303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="73570" e_stop="74303" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73570" stop="74230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73973" stop="74303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTCGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCCCCTAACTCTGTTGGAGCCATTCTATAAGGAGGTATGGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATTCGGTGGCATACCATGAAGGTCTGCAGGAAACACATCTGGAAACTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAAAAAGGAGATGATAAGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCAAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAATCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGACACACGAATAGGTAGGCCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGGTCAATAATACAAAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  P  N  S  V  G  A  I  L  *  G  G  M  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  F  G  G  I  P  *  R  S  A  G  N  T  S  G  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  L  L  A  R  K  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  Q  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  D  T  R  I  G  R  P  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  V  N  N  T  K  A  M  Q  S  Q  T   </first_frame>
            <second_frame>  E  S  F  H  P  S  S  S  Q  T  K  Q  E  H  P  K  G  M  H  S  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  P  L  T  L  L  E  P  F  Y  K  E  V  W  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  S  V  A  Y  H  E  G  L  Q  E  T  H  L  E  T  R  G  L  S  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  G  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  K  R  R  *  *  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  K  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  G  K  S  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  T  H  E  *  V  G  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  G  S  I  I  Q  K  P  C  N  H  K  P  </second_frame>
            <third_frame>   K  A  S  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  R  S  N  E  T  F  T  *  Q  L  L  K  L  G  L  *  L  P  *  L  C  W  S  H  S  I  R  R  Y  G  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  M  K  V  C  R  K  H  I  W  K  L  A  D  Y  R  N  R  L  N  *  R  Y  L  G  S  V  I  P  E  V  C  Q  E  S  *  T  P  F  T  N  H  S  L  S  T  K  K  G  D  D  K  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  G  N  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  H  T  N  R  *  A  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  G  Q  *  Y  K  S  H  A  I  T  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73640" stop="73855"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLYLTTLEVGPLTPLTLLEPFYKEVWKWGEYPVQDRCRSQYLYSVAYHEGLQETHLETRGLSKPTQLKVLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74104" stop="74301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTKQDLYTFSTITDSPTGVDTRIGRPSNSQCKLRPVANEEDTYENVDPGVNNTKAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="74274" PGL_stop="73613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74274" e_stop="73613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="74274" e_stop="73613" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74274" stop="73613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGACCCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGGCCTACCTATTCGTGTGTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTCTGGGTATGACTTGGATTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTTGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCTTATCATCTCCTTTTTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGCGAGTTTCCAGATGTGTTTCCTGCAGACCTTCATGGTATGCCACCGAATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCCATACCTCCTTATAGAATGGCTCCAACAGAGTTAGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCGAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> I  D  P  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  W  P  T  Y  S  C  V  Y  S  G  G  *  V  C  D  S  *  K  S  I  *  V  L  F  G  D  F  C  G  E  Q  Y  L  C  R  L  G  Y  L  R  N  G  *  L  *  C  N  S  G  Y  D  L  D  F  P  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  L  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  F  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  D  S  P  R  V  S  R  C  V  S  C  R  P  S  W  Y  A  T  E  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  H  T  S  L  *  N  G  S  N  R  V  R  G  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  E  C  I  P  L   </first_frame>
            <second_frame>  L  T  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  G  L  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  I  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  W  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  L  I  I  S  F  F  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  P  D  V  F  P  A  D  L  H  G  M  P  P  N  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  T  E  L  G  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </second_frame>
            <third_frame>   *  P  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  N  C  L  A  Y  L  F  V  C  L  L  R  W  V  S  L  *  *  L  K  K  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  L  M  *  F  W  V  *  L  G  F  P  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  L  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  R  *  S  A  S  F  Q  M  C  F  L  Q  T  F  M  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  P  Y  L  L  I  E  W  L  Q  Q  S  *  G  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  R  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74273" stop="73614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPGSTFSYVSSSFATGLNLHCELLGLPIRVSTPVGESVIVEKVYRSCLVTFVGSNTYVDLVILEMVDFDVILGMTWISPNFAILDCNAKTVTLAKPWTDPLVWEGDYTSNPVLIISFFRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFPDVFPADLHGMPPNRDIDFCIDLEPGTRPISIPPYRMAPTELGELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74444" PGL_stop="75214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74444" e_stop="75214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="74444" e_stop="75214" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74444" stop="75143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74444" stop="75090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74782" stop="75214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAACACAGTTGGGTGGCATACCTGGAGAGTGCACGAAACTTAGCCTCATATGCACTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAATGCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCTAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCATATTTTGGCGTTCCCTTGAAACTGATAAGTCATAAACTCAACACCAAACCGTTCCACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGTCGCATGTTGTACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGACGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTTTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTCATTTTCCCTATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGAACGTCCTCCCACGACCTCTACCACAGCCTCTTGTCGCTACTCTTC</gDNA_template>
            <first_frame> *  N  T  V  G  W  H  T  W  R  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  N  A  G  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  I  F  W  R  S  L  E  T  D  K  S  *  T  Q  H  Q  T  V  P  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  R  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  S  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  T  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  V  L  V  H  F  P  Y  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  S  L  L  S  L  L  F </first_frame>
            <second_frame>  E  T  Q  L  G  G  I  P  G  E  C  T  K  L  S  L  I  C  T  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  M  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  L  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  Y  F  G  V  P  L  K  L  I  S  H  K  L  N  T  K  P  F  H  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  N  L  R  C  W  C  R  K  H  W  R  R  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  Y  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  E  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </second_frame>
            <third_frame>   K  H  S  W  V  A  Y  L  E  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  C  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  *  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  I  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  V  A  C  C  T  S  G  T  *  G  A  G  A  E  N  T  G  D  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  F  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  L  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  N  V  L  P  R  P  L  P  Q  P  L  V  A  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75016" stop="75213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIFGVGWGGNSSFCTCSFSLSSPSLITSSVGGGVTALVSDGLGARPLPLENVLPRPLPQPLVATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75147" PGL_stop="74594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75147" e_stop="74594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="75147" e_stop="74594" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75147" stop="74594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATAGGGAAAATGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAAAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGTCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGACTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTGGAACGGTTTGGTGTTGAGTTTATGACTTATCAGTTTCAAGGGAACGCCAAAATATGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTAGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  N  K  R  R  G  G  *  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  K  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  V  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  D  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  G  T  V  W  C  *  V  Y  D  L  S  V  S  R  E  R  Q  N  M  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  R  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  K  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  S  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  T  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  M  T  Y  Q  F  Q  G  N  A  K  I  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  *  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  I  G  K  M  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  W  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  Y  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  R  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0162L12.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75146" stop="74604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDRENEQVQNEELPPQPTPKMINQVLAYLSGLSDQGQASPVFSAPAPQVPEVQHATTVAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFMTYQFQGNAKIWWRSHVECQPTEAPPMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 152 chains have been computed
$ 
$ memory statistics:
$ 42416 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 15440 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1715 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 171 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:32:09
-->
