<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:05:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713776" ref_strand="+" ref_description="SGN-E713776 [FB09CE08]">
      <seq>attcttttttccatcttctctgcggctagggttttagctcagtcttctcttcactagatgaatgtatacaagttgcaaaagatggccggatcggtcagaaccggaggaaacggtaccgtgagaagaaagaagaaggccgtacacaagacaacgtaccactgacgactaaagactacagagcaccttgaaaagaataggagtcaatggcattcctgccattgaagaagtcaacgttttcaaggaggatgttgttatccaattctttaacccccaagttcaagcatctattgctgcatacacgtggggtgttactggtactccccagacaaagaaattgcaggatattcttcctcatatcattcaccaggtgggccctgataatttggagaatttgaacaagttggccgagcagttccagaaccaggcacctggtgctgccgatgcgcctgcacgtgctgttgcaccacaggaagacgatgatgatgtaccataacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcagacgaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="125" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="275" r_length="150" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="332" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.90"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="371" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1794" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="700" r_length="329" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E713776" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAAC-TACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCT</genome_strand>
        <mrna_strand>ATGAATGTATACAAGTTGCAAAAGATGGCCGGATCGGTCAGAACCGGAGGAAACGGTACCGTGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACGTACCACTGACGACTAAAGACTACAGAGCACCTTGAAAAGAATAGGAGTCAATGGCATTCCTGCCATTGAAGAAGTCAACGTTTTCAAGGAGGATGTTGTTATCCAATTCTTTAACCCCCAAG..........................................................................................TTCAAGCATCTATTGCTGCATACACGTGGGGTGTTACTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCATATCATTCACCAGGTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAACAAGTTGGCCGAGCAGTTCCAGAACCAGGCACCTGGTGCTGCCGATGCGCCTGCACGTGCTGTTGCACCACAGGAAGACGATGATGATGTACCATAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAGACGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732021" ref_strand="+" ref_description="SGN-E732021 [LB01AC07]">
      <seq>cttgtctttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="135" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="284" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="341" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="380" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="707" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E732021" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390765" ref_strand="+" ref_description="SGN-E390765 [TUS-47-M15](-)">
      <seq>cttttttccattttctctgcggctagggttttagctcagttttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="694" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E390765" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393367" ref_strand="+" ref_description="SGN-E393367 [TUS-38-D21](-)">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="682" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E393367" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733895" ref_strand="+" ref_description="SGN-E733895 [LB11AH12]">
      <seq>tgcggctagggttctatctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="254" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="311" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="677" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E733895" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733987" ref_strand="+" ref_description="SGN-E733987 [LB11BH11]">
      <seq>tgcggctagggttctatctcagtcttctcttccaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="676" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E733987" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711343" ref_strand="+" ref_description="SGN-E711343 [FB01DA07]">
      <seq>ccattattctcttcacagatgaatgtagaaaagttgcaaaacatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="86" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="235" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="292" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="331" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1791" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="657" r_length="326" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E711343" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAACATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578249" ref_strand="-" ref_description="SGN-E578249 [LE12BC12]">
      <seq>ttttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="272" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="329" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1789" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="692" r_length="324" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E578249" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325642" ref_strand="+" ref_description="SGN-E325642 [cTOC-15-C19]">
      <seq>tttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="278" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="374" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1786" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="695" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E325642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552966" ref_strand="+" ref_description="SGN-E552966 [cTSB-5-J23]">
      <seq>tcttttttccatcttctctgcggctaggggtttagctcgctcttctcttccaagatgaatgtggaagagttgcaaaagatggcgcggttcggtcagaaccggtggaaagggtacgcatgagaagaaagaagaaggccgtacgcaagacctctacgactgacgacaaaagactacagagcaccttgaaaagaatatgtgtcaatggcattcctgccattgaagaaatcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatctattgctgcaaacgcatgggttgttagtggtactccccaaacgaagaaattgcgggatattcttcctcagatcattcaccagatgggccctgataatttggagaatttgaagaagttggccgagcagttccagaatcatgcacctggtgctgccgatgcagctgcaggtgctgttgcagcacacgaagacgatgatgatgtaccagaacttgtggctggtgaatcttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="124" r_length="70" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="273" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="330" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.92"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="369" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="689" r_length="320" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E552966" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGC-CGGTTCGGTCAGAACCGGTGGAAAGGGTAC-CATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTGGAAGAGTTGCAAAAGATGGCGCGGTTCGGTCAGAACCGGTGGAAAGGGTACGCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACGCAAGACCTCTACGACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATATGTGTCAATGGCATTCCTGCCATTGAAGAAATCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCTATTGCTGCAAACGCATGGGTTGTTAGTGGTACTCCCCAAACGAAGA...................................................................................................................................................................................................................................................................AATTGCGGGATATTCTTCCTCAGATCATTCACCAGATGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAATCATGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACACGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAATCTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554397" ref_strand="-" ref_description="SGN-E554397 [cTSC-4-C6]">
      <seq>tttttgcgggtagggttttaggtcagtttttttttcacaagatgaatgtagaaaagttgcaaaagatggccggtttggtcagaaccggtggaaagggttccatgagaagaaagaagaaggccgtacacaagacaacttcaactggcggcaaaagactacagagccccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaagggggatgttgttatccaatttgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatatttttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtgggtggtgaaacttttgaagctgctgccgaggagaaccccgctttttaaagtttttgttgaattcccttactttccaatgttttgaaatcagattttaccttagcttttgagtgttttatttcatgtttattgggaccccatttcaaaagaatttttaaatgcttttaatagtaagctattttccccttaaaaaaaaaaaacctgcagcccgggggatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="354" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="674" r_length="320" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E554397" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTTGGTCAGAACCGGTGGAAAGGGTTCCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTTCAACTGGCGGCAAAAGACTACAGAGCCCCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGGGGATGTTGTTATCCAATTTGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTTTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGGTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCCCGCTTTTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTTTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTTTATTTCATGTTTATTGGGACCCCATTTCAAAAGAATTTTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326961" ref_strand="+" ref_description="SGN-E326961 [cTOC-18-P14]">
      <seq>ttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttcccatggtctgaaatcagattttaccttagcttttgagtggtctatttcatgtctattgtgaccacatctcaaaagaattctttaanntgctttatagtaagctattttcccctttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="119" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="268" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="364" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="684" r_length="320" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E326961" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCCATGGTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGGTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTTAANNTGCTTTATAGTAAGCTATTTTCCCCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716113" ref_strand="+" ref_description="SGN-E716113 [FB16AF05]">
      <seq>gctcagtcttctcttcacagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="88" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="333" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="653" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="664"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E716113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734321" ref_strand="+" ref_description="SGN-E734321 [LB12BD12]">
      <seq>gggttttagctcagtcttctcttccaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="96" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="245" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="302" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="341" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="661" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="675"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E734321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346669" ref_strand="+" ref_description="SGN-E346669 [cTOF-28-O9]">
      <seq>ttgtctttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagctttngagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="134" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="283" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="379" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="699" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E346669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTNGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552026" ref_strand="+" ref_description="SGN-E552026 [cTSB-2-J23]">
      <seq>ttcttttttcatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="272" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="329" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="688" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="699"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E552026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746286" ref_strand="+" ref_description="SGN-E746286 [GI|47104768]">
      <seq>cttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="687" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="701"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E746286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346336" ref_strand="+" ref_description="SGN-E346336 [cTOF-23-N20]">
      <seq>tgtctttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtggtctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagtaagctattttccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="133" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="282" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="339" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="378" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1782" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="695" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E346336" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGGTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715846" ref_strand="+" ref_description="SGN-E715846 [FB15BG03]">
      <seq>cttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctgaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="111" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="260" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="317" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="356" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1781" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="666" r_length="310" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E715846" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTGAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346638" ref_strand="+" ref_description="SGN-E346638 [cTOF-28-P14]">
      <seq>ttctctgcggctagggttttaagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagaatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagctnttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagtaagctattttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="112" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="261" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="357" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1780" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="672" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E346638" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAG-ATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGAATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTNTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328799" ref_strand="+" ref_description="SGN-E328799 [cTOC-23-N20]">
      <seq>ttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="119" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="268" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="364" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1779" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="678" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E328799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723011" ref_strand="+" ref_description="SGN-E723011 [FC19AC02]">
      <seq>tttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccaaaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtggaccacatctcaaaagaattcttaaaggcttttaatagaaagctattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="278" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="374" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1778" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="688" r_length="314" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E723011" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGT-GACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAAAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGGACCACATCTCAAAAGAATTCTTAAAGGCTTTTAATAGAAAGCTATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287102" ref_strand="+" ref_description="SGN-E287102 [cLES-6-I17]">
      <seq>ttttttccctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattgagtaaccccaaagttcaagcgtcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="270" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.92"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1774" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="669" r_length="303" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E287102" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTGAGTAACCCCAAAG..........................................................................................TTCAAGCGTCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342321" ref_strand="+" ref_description="SGN-E342321 [cTOF-8-D13]">
      <seq>tcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggtttttgtgaacttacttttcagtggtctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacattctcaaaaaattccttaaatgcttntaatagtaatcctaccttgcccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="87" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="236" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="293" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="332" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="625" r_length="293" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="657"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E342321" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTTGTGAA----CTTACTTTTCAGTGGTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATTCTCAAAAAATTCCTTAAATGCTTNTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346756" ref_strand="+" ref_description="SGN-E346756 [cTOF-28-L22]">
      <seq>gttttagctcagtcttctcctcacagattaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtacccatgagaagaaagaagaaagccgtacaccaaaacaactaccaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagggttttgttgaacttactttccagtgttctgatattagattttgccttagctttngagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="95" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="635" r_length="293" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="673"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E346756" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTA-CCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACA-CAAGACAACTA-CAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTT-CTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATTAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACCAAAACAACTACCAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTNGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346665" ref_strand="+" ref_description="SGN-E346665 [cTOF-28-K21]">
      <seq>gggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggaggggccatacttcctgaaggttttgttgaacttactttcccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="246" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="636" r_length="294" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="672"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E346665" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGA-GAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTT-CCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285851" ref_strand="+" ref_description="SGN-E285851 [cLES-5-H6]">
      <seq>tcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaagttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="83" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="232" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="289" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="328" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="620" r_length="292" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="649"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E285851" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAAGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551581" ref_strand="+" ref_description="SGN-E551581 [cTSB-1-D10]">
      <seq>agctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="90" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="239" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="296" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="335" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="627" r_length="292" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="666"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E551581" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734363" ref_strand="+" ref_description="SGN-E734363 [LB12BH07]">
      <seq>ctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="106" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="255" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="312" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="351" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="643" r_length="292" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="675"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E734363" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246518" ref_strand="+" ref_description="SGN-E246518 [cLEF-45-M7]">
      <seq>ttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgggaccacatctcaaaagaattcttaaatgcttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="270" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1762" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="663" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E246518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGGGACCACATCTCAAAAGAATTCTTAAATGCTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390766" ref_strand="+" ref_description="SGN-E390766 [TUS-47-M15]">
      <seq>cttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaattcagattttaccttagcttttgagtgttctattttcatgtctattgtgaccacttctcaaaaaaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1760" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="663" r_length="296" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E390766" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTA-TTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAATTCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTTCATGTCTATTGTGACCACTTCTCAAAAAAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289126" ref_strand="+" ref_description="SGN-E289126 [cLES-18-B21]">
      <seq>tttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcatgcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="242" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="299" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="338" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1760" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="633" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E289126" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCATGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348011" ref_strand="+" ref_description="SGN-E348011 [cTOF-31-I9]">
      <seq>tcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaataaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="112" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="261" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="357" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1755" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="647" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E348011" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310115" ref_strand="+" ref_description="SGN-E310115 [cLEZ-8-N14]">
      <seq>ctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="88" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="333" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1755" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="623" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E310115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268136" ref_strand="+" ref_description="SGN-E268136 [cLEI-15-G6]">
      <seq>ttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttaacttttgagtgttctatttcatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1722" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="596" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E268136" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAACTTTTGAGTGTTCTATTTCATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325924" ref_strand="+" ref_description="SGN-E325924 [cTOC-12-K18]">
      <seq>ttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttacttttcagtgttctgatattagattttgccttagcttttgagtgttctatttcattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="81" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="230" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="287" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="326" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1717" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="574" r_length="248" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E325924" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTTCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288782" ref_strand="+" ref_description="SGN-E288782 [cLES-17-M21]">
      <seq>gcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1717" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="597" r_length="248" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E288782" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691928" ref_strand="+" ref_description="SGN-E691928 [LH_Ea07G06]">
      <seq>taggttttagctcagtcttctcttccaagatgaatgtccattagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcattaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatatacttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgctgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgagatcagattttaccttagcttttgagtgttctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="246" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1715" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="592" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E691928" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTC</genome_strand>
        <mrna_strand>ATGAATGTCCATTAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCATTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATACTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCTGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAGATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285715" ref_strand="+" ref_description="SGN-E285715 [cLES-5-N14]">
      <seq>agggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatactttctgaaggttttgttgaacttactttccagtgttctgatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="98" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="247" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="304" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="343" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="558" r_length="215" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E285715" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTTCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393118" ref_strand="+" ref_description="SGN-E393118 [TUS-38-D21]">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagagcttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1650" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="540" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E393118" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAGCTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310736" ref_strand="+" ref_description="SGN-E310736 [cLEZ-15-B1]">
      <seq>tctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaagcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaagaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="354" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1616" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="505" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E310736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAAGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304806" ref_strand="+" ref_description="SGN-E304806 [cLEX-10-O18]">
      <seq>ttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1614" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="488" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E304806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338617" ref_strand="+" ref_description="SGN-E338617 [cTOE-15-O20]">
      <seq>cggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="103" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="252" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="348" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1614" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="497" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E338617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305251" ref_strand="+" ref_description="SGN-E305251 [cLEX-15-E4]">
      <seq>tgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="254" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="311" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1609" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="494" r_length="144" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E305251" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295266" ref_strand="+" ref_description="SGN-E295266 [cLET-20-D11]">
      <seq>gctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="101" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="250" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="307" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="346" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1590" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="471" r_length="125" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E295266" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295147" ref_strand="+" ref_description="SGN-E295147 [cLET-20-O22]">
      <seq>gttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccgggaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1590" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="466" r_length="126" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E295147" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCC-AGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCGGGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283988" ref_strand="+" ref_description="SGN-E283988 [cLER-13-H18]">
      <seq>ttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatctggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="298" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="337" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1588" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="460" r_length="123" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E283988" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATCTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285609" ref_strand="+" ref_description="SGN-E285609 [cLES-5-E22]">
      <seq>ttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="298" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="337" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1583" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="455" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E285609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305255" ref_strand="+" ref_description="SGN-E305255 [cLEX-15-E22]">
      <seq>gttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1582" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="457" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E305255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308714" ref_strand="+" ref_description="SGN-E308714 [cLEZ-11-E22]">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaagcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1579" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="469" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E308714" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324909" ref_strand="+" ref_description="SGN-E324909 [cTOC-11-N4]">
      <seq>ggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="102" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="251" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="308" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="347" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="438" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E324909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289466" ref_strand="+" ref_description="SGN-E289466 [cLET-3-J22]">
      <seq>tctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="354" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1538" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="427" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E289466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283683" ref_strand="+" ref_description="SGN-E283683 [cLES-1-N12]">
      <seq>gcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1506" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="390" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E283683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290407" ref_strand="+" ref_description="SGN-E290407 [cLES-20-F11]">
      <seq>ttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185" g_stop="252" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1049" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="268" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E290407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712301" ref_strand="+" ref_description="SGN-E712301 [FB04BH06]">
      <seq>tgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="190" g_stop="252" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="212" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="269" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="308" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="600" r_length="292" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="635"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E712301" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="190" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>TGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734494" ref_strand="+" ref_description="SGN-E734494 [LB12DC07]">
      <seq>aaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="195" g_stop="252" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="207" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="264" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="303" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="623" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="639"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E734494" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="195" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>AAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274440" ref_strand="+" ref_description="SGN-E274440 [cLEN-19-K5]">
      <seq>cggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcatgcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="219" g_stop="252" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="183" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="240" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="279" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="577" r_length="298" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E274440" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="219" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>CGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCATGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712747" ref_strand="+" ref_description="SGN-E712747 [FB05CH04]">
      <seq>gtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="221" g_stop="252" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="181" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="238" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="277" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="597" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="610"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E712747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="221" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>GTCAGAACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724197" ref_strand="+" ref_description="SGN-E724197 [FC23BE04]">
      <seq>aaccggtggaaagggtaccatgagaagaaagaaaaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccaaacaaagaaattgcaggatattcttcctcaaatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccaaaacttgtggctggtgaaacttttgaagctgctgccgaggaaaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="226" g_stop="252" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="176" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="233" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="272" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1760" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="567" r_length="295" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E724197" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="226" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>AACCGGTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAAACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAAAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAAAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300257" ref_strand="-" ref_description="SGN-E300257 [cLEW-17-B4]">
      <seq>gtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="2043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="231" g_stop="252" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="171" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="228" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="267" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1466" g_stop="1743" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="545" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E300257" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300257" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="231" e_stop="252"/>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAGGGTACCATGAGAAGGTCTGTTTAGTTCTCTGTGAATGTTACCACATGGAAGTAGTTTGTGTTGATGTATTAAGAAAGAATGTGGGTGTTTGTTGCTAACTTAAAAGATTACAGTTACTTGAAAGAGCCAGTTTGGCCATGAAAATACTCCTTTTTCTCTAAAGAATTGCCAACTTCATTTCTAAATTAGTGTTTGGTTACAAAATTTCTAGTCCCAACTAGGAGTTCTATTTCAAGTTTGAAAAAAGTCGCCAAATCTTTTTTACAACTCCCTTCATAAATTCCAAGTAAATTGCTTTATTCTCTCCTGTGCAAAATGTATAACCAAACAAAACTCCATGCCAAACCAATTTCGTTAAGTACAAATAAAATGAAAATATTTGGACTCTATGACCAAACACCTTAAGTTTGTAATGACCAACTTGTGTTTGTCCAAGCGTCAAAACTTGAGTGAGGAATGTAGAGAAGGTACACGAGAAGTGTATTGATAAGGGGTATCTTATTTTTCTCATTCATGTTTTCTGAATGAGTGTGCTGCTTCTGCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGA</genome_strand>
        <mrna_strand>GTGGAAAGGGTACCATGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266059" ref_strand="-" ref_description="SGN-E266059 [cLEI-6-M11]">
      <seq>gaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="480" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="780" g_stop="932" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="210" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="249" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="569" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="583"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E266059" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="780" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>GAAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355389" ref_strand="+" ref_description="SGN-E355389 [cTOS-25-K17]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="482" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="781" g_stop="932" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="575" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E355389" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="781" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356837" ref_strand="+" ref_description="SGN-E356837 [cTOS-22-E23]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="482" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="781" g_stop="932" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="575" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E356837" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="781" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353070" ref_strand="+" ref_description="SGN-E353070 [cTOS-14-N5]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacangaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgtttgattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtggtctatttcatgtctattgtgaacacatctcaaaagaattcttaaatgcttttaataataagctattttcccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="482" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="781" g_stop="932" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1791" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="575" r_length="327" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E353070" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="781" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTT-CCCCTTCAAAGACTTA</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACANGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTTGATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGGTCTATTTCATGTCTATTGTGAACACATCTCAAAAGAATTCTTAAATGCTTTTAATAATAAGCTATTTTCCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349884" ref_strand="+" ref_description="SGN-E349884 [cTOS-3-A1]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="482" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="781" g_stop="932" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1791" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E349884" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="781" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTA</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351942" ref_strand="+" ref_description="SGN-E351942 [cTOS-8-J12]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="482" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="781" g_stop="932" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1791" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E351942" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="781" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTA</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375795" ref_strand="+" ref_description="SGN-E375795 [TUS-15-G4](-)">
      <seq>aaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="484" stop="2107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1811" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="585" r_length="340" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E375795" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCC</genome_strand>
        <mrna_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349439" ref_strand="+" ref_description="SGN-E349439 [cTOS-1-D18]">
      <seq>aaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="484" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="572" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E349439" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390859" ref_strand="+" ref_description="SGN-E390859 [TUS-47-G8](-)">
      <seq>gaaagggtaccatgagagaaagaagaaggccgtacacaagaccactgcaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctaaagtcccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="475" stop="2071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="167" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="224" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="263" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="561" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E390859" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>AAAGAAGAAGGCCGTACACAAGACCACTGCAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392380" ref_strand="+" ref_description="SGN-E392380 [TUS-35-L12]">
      <seq>aaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggaggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="484" stop="1926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="784" g_stop="932" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1634" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="414" r_length="169" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E392380" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="784" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGC</genome_strand>
        <mrna_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375796" ref_strand="+" ref_description="SGN-E375796 [TUS-15-G4]">
      <seq>aagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="485" stop="2107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="785" g_stop="932" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="205" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="244" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1803" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="576" r_length="332" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E375796" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="785" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTA</genome_strand>
        <mrna_strand>AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204164" ref_strand="+" ref_description="SGN-E204164 [cLEC-13-K9]">
      <seq>gaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagagttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="487" stop="2107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="787" g_stop="932" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="203" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="242" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1803" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="574" r_length="332" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E204164" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="787" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTA</genome_strand>
        <mrna_strand>GAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGAGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392379" ref_strand="+" ref_description="SGN-E392379 [TUS-35-L12](-)">
      <seq>aagaaagccgtacacaaaacaaatacaattgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="488" stop="2107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="788" g_stop="932" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="202" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="241" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1803" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="573" r_length="332" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E392379" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="788" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTA</genome_strand>
        <mrna_strand>AAGAAAGCCGTACACAAAACAAATACAATTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715955" ref_strand="+" ref_description="SGN-E715955 [FB15CH09]">
      <seq>gatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="518" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="818" g_stop="932" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="172" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="211" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="503" r_length="292" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="534"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E715955" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="818" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>GATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285890" ref_strand="+" ref_description="SGN-E285890 [cLES-13-E1]">
      <seq>gacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="518" stop="1364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="818" g_stop="932" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1064" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="157" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E285890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="818" e_stop="932"/>
          <exon e_start="1023" e_stop="1064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTA</genome_strand>
        <mrna_strand>GACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312464" ref_strand="+" ref_description="SGN-E312464 [cLEZ-20-O6]">
      <seq>tacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaaactattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="531" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="831" g_stop="932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="159" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="198" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="525" r_length="327" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E312464" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="831" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>TACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAACTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310212" ref_strand="-" ref_description="SGN-E310212 [cLEZ-8-J8]">
      <seq>gaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaagacttatcttctattttagcaatgcctatttttcaatgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="544" stop="2126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="844" g_stop="932" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="146" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="185" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1825" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="545" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="561"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E310212" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310212" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="844" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTC</genome_strand>
        <mrna_strand>GAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227199" ref_strand="+" ref_description="SGN-E227199 [cLEL-30-K23](-)">
      <seq>aggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttacatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="553" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="853" g_stop="932" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="137" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="176" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="468" r_length="292" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="504"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E227199" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="853" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>AGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTACATGCTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712495" ref_strand="+" ref_description="SGN-E712495 [FB05AA12]">
      <seq>cattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="574" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="874" g_stop="932" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1017" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1018" g_stop="1079" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="121" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="160" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1792" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="487" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E712495" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="874" e_stop="932"/>
          <exon e_start="1018" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</genome_strand>
        <mrna_strand>CATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.....................................................................................TTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397361" ref_strand="+" ref_description="SGN-E397361 [TUS-45-F21](-)">
      <seq>caacattttcaaggaggatgttgttttccaaattcgttaaccccaaagttcaagcatcaattggtgcaaacccctgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaagacttatcttctattttaacaatgcctatttttcaatgtcatggtatttgttattctacacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="586" stop="2148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="886" g_stop="932" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="144" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1848" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="527" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E397361" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="886" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTTCAAGGAGGATGTTGTTATCC-AATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTCATGGTATTTGTTATTCTACACAA</genome_strand>
        <mrna_strand>CAACATTTTCAAGGAGGATGTTGTTTTCCAAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGGTGCAAACCCCTGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAACAATGCCTATTTTTCAATGTCATGGTATTTGTTATTCTACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226341" ref_strand="+" ref_description="SGN-E226341 [cLEL-26-K6](-)">
      <seq>aggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="600" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="900" g_stop="932" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="90" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="129" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="449" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="465"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E226341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="900" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>AGGATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226733" ref_strand="+" ref_description="SGN-E226733 [cLEL-26-K8](-)">
      <seq>atgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="603" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="903" g_stop="932" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="87" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="126" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="446" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="462"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E226733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="903" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGTTATCCAATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATGTTGTTATCCAATTCGTTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695801" ref_strand="+" ref_description="SGN-E695801 [LH_Ea07H15](-)">
      <seq>attcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgattgtaatagtaatctactttgcccttcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="721" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="916" g_stop="932" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1023" g_stop="1079" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="74" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="113" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1466" g_stop="1763" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="405" r_length="292" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="448"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E695801" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="916" e_stop="932"/>
          <exon e_start="1023" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTTAACCCCAAAGGTATAAATATAATCTATATTTCACTTGGTTCTAGTCATCTCTTGTTTTATTACCATTCTTAATATCCTTTTTTTTTTGGATTCTGTTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>ATTCAGTAACCCCAAAG..........................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGATTGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220397" ref_strand="+" ref_description="SGN-E220397 [cLEL-12-O15](-)">
      <seq>caagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="725" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1025" g_stop="1079" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="94" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="414" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="428"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E220397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1025" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>CAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220369" ref_strand="+" ref_description="SGN-E220369 [cLEL-12-M6](-)">
      <seq>aagcatcaattgctccaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcctttaatagtaagctattttccccttcattaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="726" stop="2083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1026" g_stop="1079" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="93" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1466" g_stop="1783" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="411" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="427"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E220369" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1026" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCA</genome_strand>
        <mrna_strand>AAGCATCAATTGCTCCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCCTTTAATAGTAAGCTATTTTCCCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226939" ref_strand="+" ref_description="SGN-E226939 [cLEL-26-N15](-)">
      <seq>gcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="728" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1028" g_stop="1079" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="91" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="411" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="425"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E226939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1028" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>GCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229658" ref_strand="+" ref_description="SGN-E229658 [cLEL-4-N4](-)">
      <seq>catcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttcaaattcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="729" stop="18985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1029" g_stop="1079" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1339" g_stop="1377" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="90" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1466" g_stop="1776" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="401" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1777" i_stop="2215" i_length="439">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2216" g_stop="2240" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="426" r_length="25" r_score="0.640"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E229658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1029" e_stop="1079"/>
          <exon e_start="1339" e_stop="1377"/>
          <exon e_start="1466" e_stop="1776"/>
          <exon e_start="2216" e_stop="2240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGAGTACGTGTTTACACTTTCCTCCTGCTTTGCTTTAATTGGTAGCTGGTACTGTTTGAATGCAACCTCAACATAAACTTTATAACTATGTCTTTGAACAAATTTATACTTTAAGACTAGCATTCTTTCTGTTGGTTCTCCAACACATGACTCCTACGTTGTTAGTGGAGGAGTTGAGCTCCTACTATTTTAACTCGTTCTCATCATGTCTTGGCCACGTGCATAGGAATGTCTTAAGTTTAATATTTCTTTTGTCATGCAGAATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTCATGGTATTTGTTATTCTACACAAGTTCGTCTATATAGTAAGTATACGTGATTACATAGTTCTACTTTCGACACACATGGGGAAACTTTCTGCTTTTTGCTGATGTCCTTACCTCTATCTGAAAATTCTGAGATTGCTTTGTTTTTCACCCGGTGTCTGGTATTTGCTTTGGCCTCGATTGTTAAGAATGGTGGTTGGTTACCACATCCCTATCGCAGCCTATAGCTCGATAACATGTTGCAGTTGCCTATTTTCTCTGAATTTGGGTTTTGGTGTTGCAAGTCATGCTGAGGAAATTCTGGGATCTTAGGTGCAAGTTTTATAACCAACCAATGTTTGTTTTTCAAAGAAATCTGTTGATCACAATAACTTACCTGTTTGTACTCTTTAGATAATGAAATTATCAAGAAAAAAGA</genome_strand>
        <mrna_strand>CATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA...................................................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229653" ref_strand="+" ref_description="SGN-E229653 [cLEL-4-M7](-)">
      <seq>tcttcctcagatcattcaccagttgggccctgattaatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1052" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1352" g_stop="1377" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="347" r_length="321" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="363"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E229653" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1352" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCAGATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGA-TAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>TCTTCCTCAGATCATTCACCAGTTGG........................................................................................GCCCTGATTAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226605" ref_strand="+" ref_description="SGN-E226605 [cLEL-26-N15](-)">
      <seq>gatcattcaccagttgggccctgaataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttcccctataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1165" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1361" g_stop="1377" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1466" g_stop="1780" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="333" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="353"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E226605" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1361" e_stop="1377"/>
          <exon e_start="1466" e_stop="1780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTG-ATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCT</genome_strand>
        <mrna_strand>GATCATTCACCAGTTGG........................................................................................GCCCTGAATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225497" ref_strand="+" ref_description="SGN-E225497 [cLEL-17-O21](-)">
      <seq>ggcacgagagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1165" stop="2087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1362" g_stop="1377" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="26" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1466" g_stop="1785" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="346" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="364"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E225497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1362" e_stop="1377"/>
          <exon e_start="1466" e_stop="1785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</genome_strand>
        <mrna_strand>ATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225889" ref_strand="+" ref_description="SGN-E225889 [cLEL-17-O21](-)">
      <seq>ggcacgagagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttccacccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1165" stop="2084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1362" g_stop="1377" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="26" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1466" g_stop="1782" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="343" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="364"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E225889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1362" e_stop="1377"/>
          <exon e_start="1466" e_stop="1782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTC</genome_strand>
        <mrna_strand>ATCATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222815" ref_strand="+" ref_description="SGN-E222815 [cLEL-16-O5](-)">
      <seq>cattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgttccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaaacaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1165" stop="2061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1364" g_stop="1377" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1466" g_stop="1761" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="310" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="334"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E222815" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1364" e_stop="1377"/>
          <exon e_start="1466" e_stop="1761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCACCAGTTGGGTATGTGTCATTATCTAGTTCCAAAAGTCATGATAAAAGCTTGAATAATCAAACATGTGTTTTGACTGTTGAGAAGTGCAATTTTCAGGCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAA</genome_strand>
        <mrna_strand>CATTCACCAGTTGG........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTTCCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222235" ref_strand="+" ref_description="SGN-E222235 [cLEL-16-O5](-)">
      <seq>agttccaaaagcaggcacctggtgctgccaatgcagctgcaggtgctgttgcagcacaggaagacgataatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcaaattttaccttagcttttgagtgttctatttcatgtccattgtgactccataacccccccctttttaaatgctttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1205" stop="2034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1505" g_stop="1763" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="281"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E222235" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1505" e_stop="1763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATA</genome_strand>
        <mrna_strand>AGTTCCAAAAGCAGGCACCTGGTGCTGCCAATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATAATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAAATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCCATTGTGACTCCATAACCCCCCCCTTTTTAAATGCTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345213" ref_strand="+" ref_description="SGN-E345213 [cTOF-13-O1]">
      <seq>caaaaccgtgtcaagctactagtcctacaacatcagtaggatgtacacccgagactgtgaagggtgaaccagcagatcatatttcgtcaagtgatgcagaagaaaatgcagcccaggcacctaatgaagaaacatccaacttggttatccgtccttccaagaaaaagcatgacaaaaaagcagtaataacatcaatagatagagtagagacacttgtagaatctggtgatgacgtgagcctgaaactactgcgagacagagcaaaaaagcaaaggagaaaactaatttccaaggagagggaaaagatacaagaagctgaagctgaagctgagatgcaggagctatgtagaatcaaggacaaaatagcaagactccaggacattttacgaaggtttccaaatcacagatgtagaagagcggacacttctagtttagacgaatcattgattgtctttgtacctgttgcacagttgcaggagaaaaggtgactaatcacttcaacctttttttttccttcctaaagttgtgttcctccatttttcacaaatcaacaaagacaaacaaggaggttgaatgaggcatatacagaagcaaaattcttcttttcatgttatacatgtatagttttccatctttctttaaggacttgcaactaaatagaatgtaaaagattgtacaatagatcagtttcagttatgttaattggcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5869" stop="3649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5569" g_stop="5361" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5360" i_stop="4451" i_length="910">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4450" g_stop="3949" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="711" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E345213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5569" e_stop="5361"/>
          <exon e_start="4450" e_stop="3949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCGTGTCAAGCTACTAGTCCTACAACATCAGTAGGATGTACACCCGAGACTGTGAAGGGTGAACCAGCAGATCATATTTCGTCAAGTGATGCAGAAGAAAATGCAGCCCAGGCACCTAATGAAGAAACATCCAACTTGGTTATCCGTCCTTCCAAGAAAAAGCATGACAAAAAAGCAGTAATAACATCAATAGATAGAGTAGAGGTACGTTTAATTAGCTGAGAATTTATGTGCAGTTCTATTTGCTCTTCTACATTTATGTATATAAAGAAAATATGGTGTTTGACGCTCTACTTTTTGAATCGGGATTGCTTTCTCTATGTGAAAATGCTTATTATGTGGGTTTTAGTTTTTAGCTATCAGAAAAAGAAAAAGGTAAGTAACAAACACAAAGATGGGGCGAAATAGCTCATCGTCTCGGTTAGAACTTAGAAGATATAGATTTGTCGGTGAGAGGATTTATACCAAGTCTGTAGTGATATGTGCTGCAGATTCTTAAAATATAAAGAAATATCTTAATTTAGCCTGCAGGGATAGGGAATGTCGCTATTGTTGCTATTATCCTAAAGCTGACACGTGATTTGCACCTGCCGATGCTTCCAGTTACCCAATTTATCAATGAAATCATGGAAGCTCTCTTTTTTTATCTCAATCTATGCTATGTCAAACACAGTATATTTAAAACCTGGCTGAATTTTTGGATTAATTTGCTTACGATTTCACATTTCAAGTTCAAATTTCCGAGTTAGTTCAGTTTTTCCTTGAGAAACTTCAAATGGATAGAATCTCCCGTATTCAGTGCTCATTTTAGTTGAAAGATGGATGTATTTTGGTCTTAGAGCTTGTTTGGATTAACGTATGACTTATAAGTCAAAAGCCAAGTCAGAAATTCTAACTAATGAATGGCTTTTGGCTTATTTTTGTTATTTTGGCTTATAAGCACTTTTTTAGTTTACTCAAACACTACAAAACTGCTTAAAAACTATTTTGGTTAAACAGCACCTCGAGTAAGCTGATCCAAACACGCGCTTAGTCATTATTCACTTAGAAAGTCTAATTGAAAGATGGATGTATGTTATATCTGTGTTCTAAAGTTTCTTCTTTCCACAAGCAGACACTTGTAGAATCTGGTGATGACGTGAGCCTGAAACTACTGCGAGACAGAGCAAAAAAGCAAAGGAGAAAACTAATTTCCAAGGAGAGGGAAAAGATACAAGAAGCTGAAGCTGAAGCTGAGATGCAGGAGCTATGTAGAATCAAGGACAAAATAGCAAGACTCCAGGACATTTTACGAAGGTTTCCAAATCACAGATGTAGAAGAGCGGACACTTCTAGTTTAGACGAATCATTGATTGTCTTTGTACCTGTTGCACAGTTGCAGGAGAAAAGGTGACTAATCACTTCAACCTTTTTTTTTCCTTCCTAAAGTTGTGTTCCTCCATTTTTCACAAATCAACAAAGACAAACAAGGAGGTTGAATGAGGCATATACAGAAGCAAAATTCTTCTTTTCATGTTATACATGTATAGTTTTCCATCTTTCTTTAAGGACTTGCAACTAAATAGAATGTAAAAGATTGTACAATAGATCAGTTTCAGTTATGTTAATTGGCACAA</genome_strand>
        <mrna_strand>CAAAACCGTGTCAAGCTACTAGTCCTACAACATCAGTAGGATGTACACCCGAGACTGTGAAGGGTGAACCAGCAGATCATATTTCGTCAAGTGATGCAGAAGAAAATGCAGCCCAGGCACCTAATGAAGAAACATCCAACTTGGTTATCCGTCCTTCCAAGAAAAAGCATGACAAAAAAGCAGTAATAACATCAATAGATAGAGTAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTTGTAGAATCTGGTGATGACGTGAGCCTGAAACTACTGCGAGACAGAGCAAAAAAGCAAAGGAGAAAACTAATTTCCAAGGAGAGGGAAAAGATACAAGAAGCTGAAGCTGAAGCTGAGATGCAGGAGCTATGTAGAATCAAGGACAAAATAGCAAGACTCCAGGACATTTTACGAAGGTTTCCAAATCACAGATGTAGAAGAGCGGACACTTCTAGTTTAGACGAATCATTGATTGTCTTTGTACCTGTTGCACAGTTGCAGGAGAAAAGGTGACTAATCACTTCAACCTTTTTTTTTCCTTCCTAAAGTTGTGTTCCTCCATTTTTCACAAATCAACAAAGACAAACAAGGAGGTTGAATGAGGCATATACAGAAGCAAAATTCTTCTTTTCATGTTATACATGTATAGTTTTCCATCTTTCTTTAAGGACTTGCAACTAAATAGAATGTAAAAGATTGTACAATAGATCAGTTTCAGTTATGTTAATTGGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345690" ref_strand="+" ref_description="SGN-E345690 [cTOF-18-J1]">
      <seq>cttgttgcgtctcttcccccatttcaattttctgcaaatttttttgggtgaagagtgatatggaaagggtaacacagaaagagattggtagtagtagtactagtagtagtagtaataggaaacaaatcccagattcagtgatggaagcagtgaacagaacctcaaaaaacatggacgatttgagtagtaatgtagacgaatttctgtctctgtatggcgctggtgtttttcccgatttgggtcctctacaacaagctcaatctttgattttgctggctaaagctacaacaacactctttgcattgaggcttaggtgtaaagggatcaacccagatgaccgtcctgtcaaattagagtttgaacgtttgagcttgttccaagagaaattgcaggaattgatggacttgaataaagcgccattgcgaccatcagcaaggataaatccgcaaggtgctgctcgatttatcgagcattcgttgcctgatcttacacctgagcagagaaaaagcatgagagaaatcagtaaagctgacgggcctaggattaagtatctggaaagagttgttcataagaagaggaagtattccgaccagcaatctgttcgaactgctacccaggagttccttgagaaagctgcccgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25415" stop="27331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25715" g_stop="26020" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26021" i_stop="26108" i_length="88">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26109" g_stop="26164" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="359" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26165" i_stop="26328" i_length="164">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26329" g_stop="26383" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26384" i_stop="26723" i_length="340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26724" g_stop="26804" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="495" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26805" i_stop="26881" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.638" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26882" g_stop="27031" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="645" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E345690" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25715" e_stop="26020"/>
          <exon e_start="26109" e_stop="26164"/>
          <exon e_start="26329" e_stop="26383"/>
          <exon e_start="26724" e_stop="26804"/>
          <exon e_start="26882" e_stop="27031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGCGTCTCTTCCCCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCATGTACTCCTTTTTCCTCTTTTTTTTCTTGTGAGTTTTGAGATGTTGGTTTGTTTGTATGAGTAAATATTGGTTTTTTGATTGGTTACAGTGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTTGTATGTGTTCTTCTTGGAGATTTTGCATTTGTTATTCTATGGTTTTGTTCCTCAGATAATAGTAACCCTTTTGGTTGTGAGGGATTAATTGGTTGATTTGGTGTAAGTTTTAATTCGTTGTCTAACTTTTCTCTACGATTTTGTGGTTCTGTTAATTAATATAGGAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAGGTAAGTTTGGATCTTTCTATAAATTTCTGTGTGGTAGTGAAATAGATAAAGAGTTGTGCCAGAAAAGTTATGAAGTAAATGATTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTGGTAAGTGCTAAACTACTTTCTAAATGTGTGCAAGTTCCATTGTGTTTGGCGTGTCTTAAAACAAGTCTGTCTTGCAGAGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTACCCAGGAGTTCCTTGAGAAAGCTGCCCGTGAAC</genome_strand>
        <mrna_strand>CTTGTTGCGTCTCTTCCCCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGT---AGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCAT........................................................................................TGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTT....................................................................................................................................................................GAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAG....................................................................................................................................................................................................................................................................................................................................................CGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG.............................................................................AGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTACCCAGGAGTTCCTTGAGAAAGCTGCCCGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284483" ref_strand="+" ref_description="SGN-E284483 [cLER-16-L6]">
      <seq>gcgtctcttcccccatttcaattttctgcaaatttttttgggtgaagagtgatatggaaagggtaacacagaaagagattggtagtagtagtactagtagtagtagtagtaataggaaacaaatcccagattcagtgatggaagcagtgaacagaacctcaaaaaacatggacgatttgagtagtaatgtagacgaatttctgtctctgtatggcgctggtgtttttcccgatttgggtcctctacaacaagctcaatctttgattttgctggctaaagctacaacaacactctttgcattgaggcttaggtgtaaagggatcaacccagatgaccgtcctgtcaaattagagtttgaacgtttgagcttgttccaagagaaattgcaggaattgatggacttgaataaagcgccattgcgaccatcagcaaggataaatccgcaaggtgctgctcgatttatcgagcattcgttgcctgatcttacacctgagcagagaaaaagcatgagagaaatcagtaaagctgacgggcctaggattaagtatctggaaagagttgttcataagaagaggaagtattccgaccagcaatctgttcgaactgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25421" stop="27299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25721" g_stop="26020" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26021" i_stop="26108" i_length="88">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26109" g_stop="26164" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="356" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26165" i_stop="26328" i_length="164">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26329" g_stop="26383" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="411" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26384" i_stop="26723" i_length="340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26724" g_stop="26804" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="492" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26805" i_stop="26881" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.638" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26882" g_stop="26999" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="610" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E284483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25721" e_stop="26020"/>
          <exon e_start="26109" e_stop="26164"/>
          <exon e_start="26329" e_stop="26383"/>
          <exon e_start="26724" e_stop="26804"/>
          <exon e_start="26882" e_stop="26999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTCTTCCCCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCATGTACTCCTTTTTCCTCTTTTTTTTCTTGTGAGTTTTGAGATGTTGGTTTGTTTGTATGAGTAAATATTGGTTTTTTGATTGGTTACAGTGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTTGTATGTGTTCTTCTTGGAGATTTTGCATTTGTTATTCTATGGTTTTGTTCCTCAGATAATAGTAACCCTTTTGGTTGTGAGGGATTAATTGGTTGATTTGGTGTAAGTTTTAATTCGTTGTCTAACTTTTCTCTACGATTTTGTGGTTCTGTTAATTAATATAGGAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAGGTAAGTTTGGATCTTTCTATAAATTTCTGTGTGGTAGTGAAATAGATAAAGAGTTGTGCCAGAAAAGTTATGAAGTAAATGATTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTGGTAAGTGCTAAACTACTTTCTAAATGTGTGCAAGTTCCATTGTGTTTGGCGTGTCTTAAAACAAGTCTGTCTTGCAGAGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTAC</genome_strand>
        <mrna_strand>GCGTCTCTTCCCCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCAT........................................................................................TGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTT....................................................................................................................................................................GAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAG....................................................................................................................................................................................................................................................................................................................................................CGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG.............................................................................AGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255742" ref_strand="+" ref_description="SGN-E255742 [cLEG-36-D4]">
      <seq>cccatttcaattttctgcaaatttttttgggtgaagagtgatatggaaagggtaacacagaaagagattggtagtagtagtactagtagtagtagtaataggaaacaaatcccagattcagtgatggaagcagtgaacagaacctcaaaaaacatggacgatttgagtagtaatgtagacgaatttctgtctctgtatggcgctggtgtttttcccgatttgggtcctctacaacaagctcaatctttgattttgctggctaaagctacaacaacactctttgcattgaggcttaggtgtaaagggatcaacccagatgaccgtcctgtcaaattagagtttgaacgtttgagcttgttccaagagaaattgcaggaattgatggacttgaataaagcgccattgcgaccatcagcaaggataaatccgcaaggtgctgctcgatttatcgagcattcgttgcctgatcttacacctgagcagagaaaaagcatgagagaaatcagtaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25432" stop="27218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25732" g_stop="26020" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26021" i_stop="26108" i_length="88">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26109" g_stop="26164" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="342" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26165" i_stop="26328" i_length="164">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26329" g_stop="26383" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="397" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26384" i_stop="26723" i_length="340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26724" g_stop="26804" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="478" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26805" i_stop="26881" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.638" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26882" g_stop="26918" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="515" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E255742" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25732" e_stop="26020"/>
          <exon e_start="26109" e_stop="26164"/>
          <exon e_start="26329" e_stop="26383"/>
          <exon e_start="26724" e_stop="26804"/>
          <exon e_start="26882" e_stop="26918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCATGTACTCCTTTTTCCTCTTTTTTTTCTTGTGAGTTTTGAGATGTTGGTTTGTTTGTATGAGTAAATATTGGTTTTTTGATTGGTTACAGTGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTTGTATGTGTTCTTCTTGGAGATTTTGCATTTGTTATTCTATGGTTTTGTTCCTCAGATAATAGTAACCCTTTTGGTTGTGAGGGATTAATTGGTTGATTTGGTGTAAGTTTTAATTCGTTGTCTAACTTTTCTCTACGATTTTGTGGTTCTGTTAATTAATATAGGAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAGGTAAGTTTGGATCTTTCTATAAATTTCTGTGTGGTAGTGAAATAGATAAAGAGTTGTGCCAGAAAAGTTATGAAGTAAATGATTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTGGTAAGTGCTAAACTACTTTCTAAATGTGTGCAAGTTCCATTGTGTTTGGCGTGTCTTAAAACAAGTCTGTCTTGCAGAGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGA</genome_strand>
        <mrna_strand>CCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTAC---TAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCAT........................................................................................TGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTT....................................................................................................................................................................GAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAG....................................................................................................................................................................................................................................................................................................................................................CGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG.............................................................................AGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700348" ref_strand="+" ref_description="SGN-E700348 [FA12DE04]">
      <seq>cccagatgaccgtcctgtcaaattagagtttgaacgtttgagcttgttccaagagaaattgcaggaattgatggacttgaataaagcgccattgcgaccatcagcaaggataaatccgcaaggtgctgctcgatttatcgagcattcgttgcctgatcttacacctgagcagagaaaaagcatgagagaaatcagtaaagctgacgggcctaggattaagtatctggaaagagttgttcataagaagaggaagtattccgaccagcaatctgttcgaactgctacccaggagttccttgagaaagctgcccgtgaacttcttggtgaaaaccagagtggttttaagggacctttacaactgccagagggtgatgatgaagacatacctatgagctgattttctgagattctcttctgctgatgaagccatgcaggtgcgcaccagattttgtgctgatgagcttttcaagcattttgttccagttccaacatatgatgaagatactcggatcatacacaagctttgcagcaattgctactttagccgctaatcgttgatgcaagttataatttaatagagtctgctttcggttttcagctatgaatccaaagttgctccgtttttctgtaaggtttgtttattgtaagagaaagctggcagttacatgtacaatagtgcagcagaaactagaaattatcttttttgtagtttcatttgttttcaatagatcctgttgcagtagcagctaaaagctgggattttttttattacactttctatgacaagatgattatatggtcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25834" stop="32083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26134" g_stop="26164" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26165" i_stop="26328" i_length="164">
            <donor d_prob="0.866" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26329" g_stop="26383" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="86" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26384" i_stop="26723" i_length="340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26724" g_stop="26804" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="167" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26805" i_stop="26881" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.638" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26882" g_stop="27118" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="404" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27119" i_stop="31382" i_length="4264">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31383" g_stop="31783" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="805" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E700348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26134" e_stop="26164"/>
          <exon e_start="26329" e_stop="26383"/>
          <exon e_start="26724" e_stop="26804"/>
          <exon e_start="26882" e_stop="27118"/>
          <exon e_start="31383" e_stop="31783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATGACCGTCCTGTCAAATTAGAGTTTGTATGTGTTCTTCTTGGAGATTTTGCATTTGTTATTCTATGGTTTTGTTCCTCAGATAATAGTAACCCTTTTGGTTGTGAGGGATTAATTGGTTGATTTGGTGTAAGTTTTAATTCGTTGTCTAACTTTTCTCTACGATTTTGTGGTTCTGTTAATTAATATAGGAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAGGTAAGTTTGGATCTTTCTATAAATTTCTGTGTGGTAGTGAAATAGATAAAGAGTTGTGCCAGAAAAGTTATGAAGTAAATGATTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTGGTAAGTGCTAAACTACTTTCTAAATGTGTGCAAGTTCCATTGTGTTTGGCGTGTCTTAAAACAAGTCTGTCTTGCAGAGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTACCCAGGAGTTCCTTGAGAAAGCTGCCCGTGAACTTCTTGGTGAAAACCAGAGTGGTTTTAAGGGACCTTTACAACTGCCAGAGGGTGATGATGAAGACATACCTATGAGCTGATTTTCTGGTAGATTTTTAACTCATTTCTTCCAGTTTATATCTCTCTACTTTATGGGTCTTGTAGGTTCGCTGCTGGCATATTATTTTATCTTCTCAAAATATTTTCATGATTTTCCTAATTCCAAGTGCATGTGCTTATGGTGTTGTTGTGTGGGTATGGAATAAAGTTACTCAAATCTACCTCCTCTTTTGTTGAATTTGTAGCTGAGATAGAGATGAATTTTTTTATATTTCTTACGTATAATTTTTTAGAAGTATATTTCCAACACCAATTGAACGTATTAGTGACTCCATTGTTTTTTTCCATGGAAAATTCATGACGTCTTCCATACATTGCCGTAGGAACTGTCTGATGCAGCTTCATATGGACCAAGTTTAACACGCTCTTCTGATGATGGAGATACTAAGGACTTCCATTTTGTTTTTTTGAAACATCAAGAGATACTAAGAACATACATATAATTCAACTCTATTAGTTGGCTCCGTCTTTTTTCTATGAAAGAATTGAACAACACGTGTTTAAGAGCAAAGCATGTGCAGCACATGTTCTGAAAAAACTGCTTTTATGTGTTGGCCTTTTGGACCATGTCAAGAAGATGTATGCTGTATAGGTACATTTCTTGAATTGCACAACTTTCTTGCTCTAGTGCAAATGCTATGGTCTTCCTTTTAGTTTATTTGGCTTAGTTTGTTCACCTTCACTTTCGTAGAAAGGATATAGACTTTAGATTATGCACTAATTTTCATGCAAGTTGAAAGAAATAGTTGTGTCTGAAGGATAACAGATTCTTGGAGATGTTGGGTATCCTCTTACCAGTGTGCTACTACCCTCAATAGCTTCAAAGTGAATCAAGTCCATTCTCAAAAGGAAATGCAGAGTGCAGTTGGTTGATGAACATGTAAAAATGCTTTTACTCATCCATATTGAAAAGCATAAATGATTTTTTGAGGTTATTATATAATTGTCAGTCAAATGTTATGGCCAAAGAGATCCATGTTGGGGATCCTCTTACCAGTGTGCTACTACCCTCAATTAGCTTCAAAGTGAATCAAGTCCATTCTCAAAAGGAAATGCAGAGTGCAGTTGGTTGATGAACGTGTAAAATGCTTTTCCTCATCCATAATGAAAAGCATAAATGATTTTTTGAGGTTATTATATAATTCTCAGTCAAATGTTATGGCCAAAGAGATCCATTTTGTGACGTGATCTGCTTTCATCAAGGAATCGAAAACAACAGCTTTGACCAGTTGCAGCATCTTTTAGGAACATGTCAAAAGGTTATGGTGAAAATGGACTTGTATGACACTGTAAAAAAGGACTTGCATGATATATCAAAGTGGCTCTAATCTAGATATTGAGGGTGCAATTCTATTGTCTTTTCTTAGTCACACTCATCATAATAGGTCAGAAATGCAATCCTCATGGGAATCTTGCCACTTACTGTCTTCCACTAGGCACTAAGTTTGGTTTTAAATCTAGATCCTTCTAATAAAAAGTTACCTTCCTAAAGATGCTGAAGTACAACGGTCAAAAAGAAAATGAGAAAGGAGTAGAGGGGTTAGGAATAGAAAGGTAGGATCAAGCAATCAAAGATAAGTCACTAAAAGGGCAGCTCCATGCTCCAAGTTTGCACCATAGACGGTGTTGCTGAAGGGCCGGATCTACATGGAAGGGTGAGGGTGCCACGACACCTGGTCACTCAGCTAAATTTTTCGGACACACATAGGCTTTTTTAATTAGTAATGATATGTATGAAGGTTGGCCCACAGCACTATAGTAGTCGCTGGTCTGGTGGCCATTGGCCTGGGTGCCAGGGGCTATGTCTAAGTTCGAATCCCCGTGAACATTTTTAAAAAAGAATTTATTCACGAATCACACTCTAAAGCAAATAAATATCCATAATTCTTGTACCTTTTTTTTGTCTTTTCTTCTTTTTCTAGTTCCCTTTTTTACATGTTTGTTCTTATTCCGGTGTATATTTTTGCTTCTTTCTTCTTTTTTTTAAAGAAAAAACTTCAAGTATTTAATTGAATCTGATTTTAATTTTTTTTCTTTTATTTTCCTTCAAAATAAATTTTATCTGTTCAATTTTATTCCTTGTTTTTAATCTTTTGAACAAAAGTAACGGAAGCAAAGCCCAATGCATGCTACCTAAGTACTATAATAAATTCAAATGTTACCAGTTTCAAAAAACCCAATAATACTAGATCCACATTTAGAGCGAGCATCAGGTGATCTGAAGATATGGATCAGTACAACTAAGTAAATTTTAGATGATGATTTTTACTGTCCTTTTTTTTCCTTATGAAGTACCTGTGATTTATTAATGGAACATCCGGTGGATGCAAAGCAATAGAAAAGCTTTTGCAGCTTCTATACCTAACTTAAGGAGCAAACAAAATCAAGGAATATTTTACATTATTTACATTGTTCAGTTTTTTGCTTTAACAATAAGGTGAGGTATTTCGTTGCAAGCTTGGGATTGGTGGTGATTCCCCTTTCAAGCGACTCAGGTTTCTTTCCTTCCATAATGTCCCAGGAAATCATCCGCGATATGACGTGCCGTAATCTTTTTATTGATCTGTACCATCAAAACTTCTTTTGCTGTTTGAGGCAGTACACGAGCACAAAACATGTGCAAAATATCCTTTGTTGTACTGTAGTGAAGAGAGGTGGTAAATTTTTCTGAGATGTAATTGCACAAATAACAACTAGTACTTGGTACTAGTCTGCTCTTCTCGAGGTTTTCTTGATTAAGGCATGTCTCCTGTATCACCAACTCACTAAAACATGCGTAGGAAAGTAACTGACCCTGAAATGAGATTAATAGCTATTATCTTGGAGGTATGCTATAATAAGAACATATATGAGACCCGTACACATTAATAAATGGGTTTTAGAGCCACGGGACCGACACCAATTATATGTTATGCAGTGCTTCCTTCTTAGGGAAGAGGGTCTTTTGGAAACAACCTCTCTACTTCGAAGAGGTGGAGGTAAGGTCTGTGTACATTTATTTTACCTTCCCCAGACCCCACTTTGCGGGATTTCACTGGGTATGTTGTTGTTGTAGTAGTAGTGCTTCCTTTAACCTTGAATGATTGATATTCTTTCCTTTTTGGTCCATCTAGAAATTGATACCTTTTGATTTTTGAATCTATTTTGTACTTGTGGATACCAAGGAACACGAAAACAAGTACATTGGTAACAAGGCTAATCGTTTGTATTTATCCATATTTTACTTAGATTGTTGTTTCTTTTATGAATCACATGTCTAATCAAACTACCAAATAAATCGGTGCAGTGGAGGTAGTACCTGTGGATTTGTTTAGCAATTTGGTTTTAGTTTTGGTGTCAATGTCTCCAGTTACTTCCTGTAAATTTCTTTAGCTCACAGTCAGGTACATGTTTCAGTCTTTTAATTAGTCACCTCATGATTGTGGATTTTTCTTTTTGCAACTTCCTCGGATATATGAAAGTTTACATGTTTTCATAGGGAAATGGTTTAATTAACAAAGGAGGGAATTCCCCTAAAGTAGTGGATACAAAAAGTTGAGTTTAAAATTTCCCTCTATATAACTCTGTTTATTTAGAGTAAATCTTGAGTATCAGTTAGTGATATTCTGTCAATTTCAAGTCTCTTACTGTATTTCCTACTCCAATAAGTAACATCAGTACTCATGCTTGGTGATACTGAAGTTCCCTGTGATGCTGAAGGAGACGTTTTCTACTGCTGTTTTCCCATTTCTGTCCCTTTCAGTTCAAAACGTCTTTTAAGATATAACAAATATAAGATTCATGTGTCTTCATATCTGATTGAGCTTATGGCTGAAATAAAGATGAATGAGAAGTTTTATTATTTGTCTTCTGCAAAGTTTTGGCTGGTCAAGGGTTATCAAAATATAGTTTTGGGTAGTCAAAAGCTTTTCCAGAAAATGATGAGAATGCGACAAGATTTTTTTTTAATAAATTGCAGACATGCAACTTCGGCGGAGTATATTTTAACCCTTAGAATGACGATCTTGTATTATAGCTGTTCTTAGTTTTTGATGTGCTAACTTCTAGTATCATCTACTACTTCTTTTGTGATGCTCAATTATCTTATGATAAGCAATCGGAATTAATTGTTATTTGTGTTTGAGCAGTAAACTGTTCTCCGCAACCCTTTGCAAAGAATAGTTTTGACTCCATTTTTCTTAAGAAAAAAATGTGTGATCCTCTTGGTTGTGTCTTGCTTTTGGTTAACCATGATATGAATTCTATGGTGCAGAGATTCTCTTCTGCTGATGAAGCCATGCAGGTGCGCACCAGATTTTGTGCTGATGAGCTTTTCAAGCATTTTGTTCCAGTTCCAACATATGATGAAGATACTCGGATCATACACAAGCTTTGCAGCAATTGCTACTTTAGCCGCTAATCGTTGATGCAAGTTATAATTTAATAGAGTCTGCTTTCGGTTTTCAGCTATGAATCCAAAGTTGCTCCGTTTTTCTGTAAGGTTTGTTTATTGTAAGAGAAAGCTGGCAGTTACATGTACAATAGTGCAGCAGAAACTAGAAATTATCTTTTTTGTAGTTTCATTTGTTTTCAATAGATCCTGTTGCAGTAGCAGCTAAAAGCTGGGATTTTTTTTATTACACTTTCTATGACAAGATGATTATATGGTCAGTG</genome_strand>
        <mrna_strand>CCCAGATGACCGTCCTGTCAAATTAGAGTTT....................................................................................................................................................................GAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAG....................................................................................................................................................................................................................................................................................................................................................CGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG.............................................................................AGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTACCCAGGAGTTCCTTGAGAAAGCTGCCCGTGAACTTCTTGGTGAAAACCAGAGTGGTTTTAAGGGACCTTTACAACTGCCAGAGGGTGATGATGAAGACATACCTATGAGCTGATTTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCTCTTCTGCTGATGAAGCCATGCAGGTGCGCACCAGATTTTGTGCTGATGAGCTTTTCAAGCATTTTGTTCCAGTTCCAACATATGATGAAGATACTCGGATCATACACAAGCTTTGCAGCAATTGCTACTTTAGCCGCTAATCGTTGATGCAAGTTATAATTTAATAGAGTCTGCTTTCGGTTTTCAGCTATGAATCCAAAGTTGCTCCGTTTTTCTGTAAGGTTTGTTTATTGTAAGAGAAAGCTGGCAGTTACATGTACAATAGTGCAGCAGAAACTAGAAATTATCTTTTTTGTAGTTTCATTTGTTTTCAATAGATCCTGTTGCAGTAGCAGCTAAAAGCTGGGATTTTTTTTATTACACTTTCTATGACAAGATGATTATATGGTCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213045" ref_strand="+" ref_description="SGN-E213045 [cLEC-72-H21]">
      <seq>ttcgtttaaagtaataacagtgtgtccacttttgatactattgtttctgatcagtaaaaaagagaaaagtatcatgcttgcctcccataacatgatgaagaatgggtgtgtgctggagtggatattcaaatgatttctgtttgttcagcatataatagttattgttgaagatgtgttatttagaaagtttgatttgtttccatatgacgtaacaaggacaaatgttgaatactgactattctcaatttgtcctataagcgccattgccaccatcagcaaggataaatccgcaaggggctgctccaattatccagcattccttgcctgatcttacacctgaaaaaaagcctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="26166" stop="27108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26466" g_stop="26804" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E213045" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26466" e_stop="26804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG</genome_strand>
        <mrna_strand>TTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCCACCATCAGCAAGGATAAATCCGCAAGGGGCTGCTCCAATTATCCAGCATTCCTTGCCTGATCTTACACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350893" ref_strand="+" ref_description="SGN-E350893 [cTOS-7-B11]">
      <seq>agagtggttttaagggacctttacaactgccagagggtgatgatgaagacatacctatgagctgattttctgagattctcttctgctgatgaagccatgcaggtgcgcaccagattttgtgctgatgagcttttcaagcattttgttccagttccaacatatgatgaagatactcggatcatacacaagctttgcagcaattgctactttagccgctaatcgttgatgcaagttataatttaatagagtctgctttcggttttcagctatgaatccaaagttgctccgtttttctgtaaggtttgtttattgtaagagaaagctggcagttacatgtacaatagtgcagcagaaactagaaattatcttttttgtagtttcatttgttttcaatagatcctgttgcagtagcagctaaaagctgggattttttttattacactttctatgacaagatgattatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="26747" stop="32076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27047" g_stop="27118" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27119" i_stop="31382" i_length="4264">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31383" g_stop="31776" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="466" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E350893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27047" e_stop="27118"/>
          <exon e_start="31383" e_stop="31776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGTTTTAAGGGACCTTTACAACTGCCAGAGGGTGATGATGAAGACATACCTATGAGCTGATTTTCTGGTAGATTTTTAACTCATTTCTTCCAGTTTATATCTCTCTACTTTATGGGTCTTGTAGGTTCGCTGCTGGCATATTATTTTATCTTCTCAAAATATTTTCATGATTTTCCTAATTCCAAGTGCATGTGCTTATGGTGTTGTTGTGTGGGTATGGAATAAAGTTACTCAAATCTACCTCCTCTTTTGTTGAATTTGTAGCTGAGATAGAGATGAATTTTTTTATATTTCTTACGTATAATTTTTTAGAAGTATATTTCCAACACCAATTGAACGTATTAGTGACTCCATTGTTTTTTTCCATGGAAAATTCATGACGTCTTCCATACATTGCCGTAGGAACTGTCTGATGCAGCTTCATATGGACCAAGTTTAACACGCTCTTCTGATGATGGAGATACTAAGGACTTCCATTTTGTTTTTTTGAAACATCAAGAGATACTAAGAACATACATATAATTCAACTCTATTAGTTGGCTCCGTCTTTTTTCTATGAAAGAATTGAACAACACGTGTTTAAGAGCAAAGCATGTGCAGCACATGTTCTGAAAAAACTGCTTTTATGTGTTGGCCTTTTGGACCATGTCAAGAAGATGTATGCTGTATAGGTACATTTCTTGAATTGCACAACTTTCTTGCTCTAGTGCAAATGCTATGGTCTTCCTTTTAGTTTATTTGGCTTAGTTTGTTCACCTTCACTTTCGTAGAAAGGATATAGACTTTAGATTATGCACTAATTTTCATGCAAGTTGAAAGAAATAGTTGTGTCTGAAGGATAACAGATTCTTGGAGATGTTGGGTATCCTCTTACCAGTGTGCTACTACCCTCAATAGCTTCAAAGTGAATCAAGTCCATTCTCAAAAGGAAATGCAGAGTGCAGTTGGTTGATGAACATGTAAAAATGCTTTTACTCATCCATATTGAAAAGCATAAATGATTTTTTGAGGTTATTATATAATTGTCAGTCAAATGTTATGGCCAAAGAGATCCATGTTGGGGATCCTCTTACCAGTGTGCTACTACCCTCAATTAGCTTCAAAGTGAATCAAGTCCATTCTCAAAAGGAAATGCAGAGTGCAGTTGGTTGATGAACGTGTAAAATGCTTTTCCTCATCCATAATGAAAAGCATAAATGATTTTTTGAGGTTATTATATAATTCTCAGTCAAATGTTATGGCCAAAGAGATCCATTTTGTGACGTGATCTGCTTTCATCAAGGAATCGAAAACAACAGCTTTGACCAGTTGCAGCATCTTTTAGGAACATGTCAAAAGGTTATGGTGAAAATGGACTTGTATGACACTGTAAAAAAGGACTTGCATGATATATCAAAGTGGCTCTAATCTAGATATTGAGGGTGCAATTCTATTGTCTTTTCTTAGTCACACTCATCATAATAGGTCAGAAATGCAATCCTCATGGGAATCTTGCCACTTACTGTCTTCCACTAGGCACTAAGTTTGGTTTTAAATCTAGATCCTTCTAATAAAAAGTTACCTTCCTAAAGATGCTGAAGTACAACGGTCAAAAAGAAAATGAGAAAGGAGTAGAGGGGTTAGGAATAGAAAGGTAGGATCAAGCAATCAAAGATAAGTCACTAAAAGGGCAGCTCCATGCTCCAAGTTTGCACCATAGACGGTGTTGCTGAAGGGCCGGATCTACATGGAAGGGTGAGGGTGCCACGACACCTGGTCACTCAGCTAAATTTTTCGGACACACATAGGCTTTTTTAATTAGTAATGATATGTATGAAGGTTGGCCCACAGCACTATAGTAGTCGCTGGTCTGGTGGCCATTGGCCTGGGTGCCAGGGGCTATGTCTAAGTTCGAATCCCCGTGAACATTTTTAAAAAAGAATTTATTCACGAATCACACTCTAAAGCAAATAAATATCCATAATTCTTGTACCTTTTTTTTGTCTTTTCTTCTTTTTCTAGTTCCCTTTTTTACATGTTTGTTCTTATTCCGGTGTATATTTTTGCTTCTTTCTTCTTTTTTTTAAAGAAAAAACTTCAAGTATTTAATTGAATCTGATTTTAATTTTTTTTCTTTTATTTTCCTTCAAAATAAATTTTATCTGTTCAATTTTATTCCTTGTTTTTAATCTTTTGAACAAAAGTAACGGAAGCAAAGCCCAATGCATGCTACCTAAGTACTATAATAAATTCAAATGTTACCAGTTTCAAAAAACCCAATAATACTAGATCCACATTTAGAGCGAGCATCAGGTGATCTGAAGATATGGATCAGTACAACTAAGTAAATTTTAGATGATGATTTTTACTGTCCTTTTTTTTCCTTATGAAGTACCTGTGATTTATTAATGGAACATCCGGTGGATGCAAAGCAATAGAAAAGCTTTTGCAGCTTCTATACCTAACTTAAGGAGCAAACAAAATCAAGGAATATTTTACATTATTTACATTGTTCAGTTTTTTGCTTTAACAATAAGGTGAGGTATTTCGTTGCAAGCTTGGGATTGGTGGTGATTCCCCTTTCAAGCGACTCAGGTTTCTTTCCTTCCATAATGTCCCAGGAAATCATCCGCGATATGACGTGCCGTAATCTTTTTATTGATCTGTACCATCAAAACTTCTTTTGCTGTTTGAGGCAGTACACGAGCACAAAACATGTGCAAAATATCCTTTGTTGTACTGTAGTGAAGAGAGGTGGTAAATTTTTCTGAGATGTAATTGCACAAATAACAACTAGTACTTGGTACTAGTCTGCTCTTCTCGAGGTTTTCTTGATTAAGGCATGTCTCCTGTATCACCAACTCACTAAAACATGCGTAGGAAAGTAACTGACCCTGAAATGAGATTAATAGCTATTATCTTGGAGGTATGCTATAATAAGAACATATATGAGACCCGTACACATTAATAAATGGGTTTTAGAGCCACGGGACCGACACCAATTATATGTTATGCAGTGCTTCCTTCTTAGGGAAGAGGGTCTTTTGGAAACAACCTCTCTACTTCGAAGAGGTGGAGGTAAGGTCTGTGTACATTTATTTTACCTTCCCCAGACCCCACTTTGCGGGATTTCACTGGGTATGTTGTTGTTGTAGTAGTAGTGCTTCCTTTAACCTTGAATGATTGATATTCTTTCCTTTTTGGTCCATCTAGAAATTGATACCTTTTGATTTTTGAATCTATTTTGTACTTGTGGATACCAAGGAACACGAAAACAAGTACATTGGTAACAAGGCTAATCGTTTGTATTTATCCATATTTTACTTAGATTGTTGTTTCTTTTATGAATCACATGTCTAATCAAACTACCAAATAAATCGGTGCAGTGGAGGTAGTACCTGTGGATTTGTTTAGCAATTTGGTTTTAGTTTTGGTGTCAATGTCTCCAGTTACTTCCTGTAAATTTCTTTAGCTCACAGTCAGGTACATGTTTCAGTCTTTTAATTAGTCACCTCATGATTGTGGATTTTTCTTTTTGCAACTTCCTCGGATATATGAAAGTTTACATGTTTTCATAGGGAAATGGTTTAATTAACAAAGGAGGGAATTCCCCTAAAGTAGTGGATACAAAAAGTTGAGTTTAAAATTTCCCTCTATATAACTCTGTTTATTTAGAGTAAATCTTGAGTATCAGTTAGTGATATTCTGTCAATTTCAAGTCTCTTACTGTATTTCCTACTCCAATAAGTAACATCAGTACTCATGCTTGGTGATACTGAAGTTCCCTGTGATGCTGAAGGAGACGTTTTCTACTGCTGTTTTCCCATTTCTGTCCCTTTCAGTTCAAAACGTCTTTTAAGATATAACAAATATAAGATTCATGTGTCTTCATATCTGATTGAGCTTATGGCTGAAATAAAGATGAATGAGAAGTTTTATTATTTGTCTTCTGCAAAGTTTTGGCTGGTCAAGGGTTATCAAAATATAGTTTTGGGTAGTCAAAAGCTTTTCCAGAAAATGATGAGAATGCGACAAGATTTTTTTTTAATAAATTGCAGACATGCAACTTCGGCGGAGTATATTTTAACCCTTAGAATGACGATCTTGTATTATAGCTGTTCTTAGTTTTTGATGTGCTAACTTCTAGTATCATCTACTACTTCTTTTGTGATGCTCAATTATCTTATGATAAGCAATCGGAATTAATTGTTATTTGTGTTTGAGCAGTAAACTGTTCTCCGCAACCCTTTGCAAAGAATAGTTTTGACTCCATTTTTCTTAAGAAAAAAATGTGTGATCCTCTTGGTTGTGTCTTGCTTTTGGTTAACCATGATATGAATTCTATGGTGCAGAGATTCTCTTCTGCTGATGAAGCCATGCAGGTGCGCACCAGATTTTGTGCTGATGAGCTTTTCAAGCATTTTGTTCCAGTTCCAACATATGATGAAGATACTCGGATCATACACAAGCTTTGCAGCAATTGCTACTTTAGCCGCTAATCGTTGATGCAAGTTATAATTTAATAGAGTCTGCTTTCGGTTTTCAGCTATGAATCCAAAGTTGCTCCGTTTTTCTGTAAGGTTTGTTTATTGTAAGAGAAAGCTGGCAGTTACATGTACAATAGTGCAGCAGAAACTAGAAATTATCTTTTTTGTAGTTTCATTTGTTTTCAATAGATCCTGTTGCAGTAGCAGCTAAAAGCTGGGATTTTTTTTATTACACTTTCTATGACAAGATGATTATATG</genome_strand>
        <mrna_strand>AGAGTGGTTTTAAGGGACCTTTACAACTGCCAGAGGGTGATGATGAAGACATACCTATGAGCTGATTTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCTCTTCTGCTGATGAAGCCATGCAGGTGCGCACCAGATTTTGTGCTGATGAGCTTTTCAAGCATTTTGTTCCAGTTCCAACATATGATGAAGATACTCGGATCATACACAAGCTTTGCAGCAATTGCTACTTTAGCCGCTAATCGTTGATGCAAGTTATAATTTAATAGAGTCTGCTTTCGGTTTTCAGCTATGAATCCAAAGTTGCTCCGTTTTTCTGTAAGGTTTGTTTATTGTAAGAGAAAGCTGGCAGTTACATGTACAATAGTGCAGCAGAAACTAGAAATTATCTTTTTTGTAGTTTCATTTGTTTTCAATAGATCCTGTTGCAGTAGCAGCTAAAAGCTGGGATTTTTTTTATTACACTTTCTATGACAAGATGATTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252304" ref_strand="+" ref_description="SGN-E252304 [cLEG-12-N21]">
      <seq>caacctctctacttcgaagaggtggaggtaaggtctgtgtacatttattttaccttccccagaccccactttgcgggatttcactgggtatgttgttgttgtagtagtagtgcttcctttaaccttgaatgattgatattctttcctttttggtccatctagaaattgataccttttgatttttgaatctattttgtacttgtggataccaaggaacacgaaaacaagtacattggtaacaaggctaatcgtttgtatttatccatattttacttagattgttgtttcttttatgaatcacatgtctaatcaaactaccaaataaatcggtgcagtggaggtagtacctgtggatttgtttagcaatttggttttagttttggtgtcaatgtctccagttacttcctgtaaatttctttagctcacagtcaggtacatgtttcagtcttttaattagtcacctcatgattgtggatttttctttttgcaacttcctcggatatatgaaagtttacatgttttcatagggaaatggtttaattaacaaaggagggaattcccctaaagtagtggatacaaaaagttgagtttaaaatttccctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="29782" stop="30986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30082" g_stop="30686" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E252304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30082" e_stop="30686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCTCTACTTCGAAGAGGTGGAGGTAAGGTCTGTGTACATTTATTTTACCTTCCCCAGACCCCACTTTGCGGGATTTCACTGGGTATGTTGTTGTTGTAGTAGTAGTGCTTCCTTTAACCTTGAATGATTGATATTCTTTCCTTTTTGGTCCATCTAGAAATTGATACCTTTTGATTTTTGAATCTATTTTGTACTTGTGGATACCAAGGAACACGAAAACAAGTACATTGGTAACAAGGCTAATCGTTTGTATTTATCCATATTTTACTTAGATTGTTGTTTCTTTTATGAATCACATGTCTAATCAAACTACCAAATAAATCGGTGCAGTGGAGGTAGTACCTGTGGATTTGTTTAGCAATTTGGTTTTAGTTTTGGTGTCAATGTCTCCAGTTACTTCCTGTAAATTTCTTTAGCTCACAGTCAGGTACATGTTTCAGTCTTTTAATTAGTCACCTCATGATTGTGGATTTTTCTTTTTGCAACTTCCTCGGATATATGAAAGTTTACATGTTTTCATAGGGAAATGGTTTAATTAACAAAGGAGGGAATTCCCCTAAAGTAGTGGATACAAAAAGTTGAGTTTAAAATTTCCCTCTA</genome_strand>
        <mrna_strand>CAACCTCTCTACTTCGAAGAGGTGGAGGTAAGGTCTGTGTACATTTATTTTACCTTCCCCAGACCCCACTTTGCGGGATTTCACTGGGTATGTTGTTGTTGTAGTAGTAGTGCTTCCTTTAACCTTGAATGATTGATATTCTTTCCTTTTTGGTCCATCTAGAAATTGATACCTTTTGATTTTTGAATCTATTTTGTACTTGTGGATACCAAGGAACACGAAAACAAGTACATTGGTAACAAGGCTAATCGTTTGTATTTATCCATATTTTACTTAGATTGTTGTTTCTTTTATGAATCACATGTCTAATCAAACTACCAAATAAATCGGTGCAGTGGAGGTAGTACCTGTGGATTTGTTTAGCAATTTGGTTTTAGTTTTGGTGTCAATGTCTCCAGTTACTTCCTGTAAATTTCTTTAGCTCACAGTCAGGTACATGTTTCAGTCTTTTAATTAGTCACCTCATGATTGTGGATTTTTCTTTTTGCAACTTCCTCGGATATATGAAAGTTTACATGTTTTCATAGGGAAATGGTTTAATTAACAAAGGAGGGAATTCCCCTAAAGTAGTGGATACAAAAAGTTGAGTTTAAAATTTCCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537951" ref_strand="+" ref_description="SGN-E537951 [TUS-56-N4](-)">
      <seq>gcgcaagataaaaatgaatagctcttgttttcaggggaaaaaagaagggaggtctttcatgtacgcggcaaagacgtaatgtctaccaacaggcctggagttgcctagtcatttaaagagtctgctacatgcattatgagtatgggatcaggcaaaataataggtgtgtgaatactttcatcatcttcaccacagaatgcacattcaaaaggtactttaccagacatttgaagtctatccattgttacaagcctttgttgaacagacagccacagattcaatctgagatgaggatgaagtcaagtttgcaaggtaatactctttcttttgcaactgattcagtctttgattgcgaaaaatgaaattacgatagctcaagttcagtgagctttaggtattgtatctagaagaagaaggctttttcttttgtacagaagtcattcaccattccaatttggaatagcaagtgtaagaggaagaaaatgatccataaatttctctttcttgtttttttcaaaactttattacttaattgatttcactccattaagtaaaccattttgtatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="36380" stop="34788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36080" g_stop="36036" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36035" i_stop="35620" i_length="416">
            <donor d_prob="0.655" d_score="0.91"/>
            <acceptor a_prob="0.821" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35619" g_stop="35082" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="580" r_length="533" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E537951" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36080" e_stop="36036"/>
          <exon e_start="35619" e_stop="35082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCAAGAT-AA-ATGAATAGCTCTTGTTTTCAGGGGAAAAAAGAAGGTCCTCTCTATTTCATTCCAAACTTATGAACCTACAGTTTTTCAGTTTCCAGGGCAAAATTAATGTTATGTACTTAAAAAAGGACATACAATTGTAACCCTCTTGATCAAGTATGCCGTGAAGAAATTCAACGTCCAAACGTTGAGACCTATGCATCCTTTGATTCATGAGGGGAAGATCTGTAGACTGTAGTATATTATATATATGTCAATGTCTCATTCTGGATAAGTGGTTTTGCTAGTTCATTGTAATTTAGGTTGGTCAATGTCATAAATAATTTATAGATCTATCTCCTTTATTTTTGATTGAACAGACAGCTTTCTATTAATCAAAATTTGTAAGTTACATGATCACCCACTGCATCAAGTCTCTCTACAAAATCTTTCTGCATTAACTTGACCTCTCTGGAATCTCAGGGAGGTCTTTCATGTACCGCGGCAAAGACGTAATGTCTACCAACAGGCCTGGAGTTGCCTAGTCATTTAAGGAGTCTGCTACATGTATTATTATGAGTATGGGATCAGACAAAATAATAGGTGTGTGAATACTTTCATCATCTTCACCACAGAATGCACATTCAAAAGGTACTTTACCCAGACATTTGAAGTCTATCCATTGTTACAGGCCTTTGTTGAACAGACAGCCACAAATTCAATCTGAGATGAGGATGAAGTCAATTTTGCAAGGTAAATACTC-TTCTTTTGCAACTGATTCAGTCTTTGATTGCGAAAAACGAAATTACGATAGCTCAAGTTCAGTGAGCTTTAGGTATTGTATCTAGAAGAAGAAGGCTTTTTCTTTTGTACAGAAGTCATTCACCATTCCAATTTGGAATAGCAAGTGTAAGAGGAAGAAAATGATCCATAAATTTCTCTATCTTG-TTTTTTCCAAACTTCATTACTTTAATTGATTTCACTTCATTAAATAAACCATTTTGTATTTATCATATTTATA</genome_strand>
        <mrna_strand>GCGCAAGATAAAAATGAATAGCTCTTGTTTTCAGGGGAAAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCTTTCATGTA-CGCGGCAAAGACGTAATGTCTACCAACAGGCCTGGAGTTGCCTAGTCATTTAAAGAGTCTGCTACATG---CATTATGAGTATGGGATCAGGCAAAATAATAGGTGTGTGAATACTTTCATCATCTTCACCACAGAATGCACATTCAAAAGGTACTTTA-CCAGACATTTGAAGTCTATCCATTGTTACAAGCCTTTGTTGAACAGACAGCCACAGATTCAATCTGAGATGAGGATGAAGTCAAGTTTGCAAGGT-AATACTCTTTCTTTTGCAACTGATTCAGTCTTTGATTGCGAAAAATGAAATTACGATAGCTCAAGTTCAGTGAGCTTTAGGTATTGTATCTAGAAGAAGAAGGCTTTTTCTTTTGTACAGAAGTCATTCACCATTCCAATTTGGAATAGCAAGTGTAAGAGGAAGAAAATGATCCATAAATTTCTCTTTCTTGTTTTTTTCAAAACTTTATTAC-TTAATTGATTTCACTCCATTAAGTAAACCATTTTGTATTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537924" ref_strand="+" ref_description="SGN-E537924 [TUS-56-M12](-)">
      <seq>gcagcacaagctacaccctgatcatatgctttcttcctgagtcatttattcaaaaggcgaaatcgacaactcctggacagacatatcggctaatacgacatttttctctgcgcaagataaatgaatagctcttgttttcaggggaaaaaagaagggaggtctttcatgtacgcggcaaagacgtaatgtctaccaacaggcctggagttgcctagtcatttaaagagtctgctacatgcattatgagtatgggatcaggcaaaataataggtgtgtgaatactttcatcatcttcaccacagaatgcacattcaaaaggtactttaccagacatttgaagtctatccattgttacaagcctttgttgaacagacagccacagattcaatctgagatgaggatgaagtcaagtttgcaaggtaatactctttcttttgcaactgattcagtctttgattgcgaaaaatgaaattacgatagctcaagttcagtgagctttaggtattgtatctagaagaagaaggctttttcttttgtacagaagtcattcaccattccaatttggaatagcaagtgtaagaggaagaaaatgatccataaatttctctttcttgtttttttcaaaactttattacttaattgatttcactccattaagtaaaccattttgtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="36489" stop="34788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36189" g_stop="36036" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36035" i_stop="35620" i_length="416">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35619" g_stop="35083" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="686" r_length="532" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E537924" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36189" e_stop="36036"/>
          <exon e_start="35619" e_stop="35083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACAAGCTACACCCTGATCATATGCTTTCTTCCTGAGTCATTTATTCAAAAGGCGAAATCGACAACTCCTGGACAGACATATCGGCTAATACGACATTTTTCTCTGCGCAAGATAAATGAATAGCTCTTGTTTTCAGGGGAAAAAAGAAGGTCCTCTCTATTTCATTCCAAACTTATGAACCTACAGTTTTTCAGTTTCCAGGGCAAAATTAATGTTATGTACTTAAAAAAGGACATACAATTGTAACCCTCTTGATCAAGTATGCCGTGAAGAAATTCAACGTCCAAACGTTGAGACCTATGCATCCTTTGATTCATGAGGGGAAGATCTGTAGACTGTAGTATATTATATATATGTCAATGTCTCATTCTGGATAAGTGGTTTTGCTAGTTCATTGTAATTTAGGTTGGTCAATGTCATAAATAATTTATAGATCTATCTCCTTTATTTTTGATTGAACAGACAGCTTTCTATTAATCAAAATTTGTAAGTTACATGATCACCCACTGCATCAAGTCTCTCTACAAAATCTTTCTGCATTAACTTGACCTCTCTGGAATCTCAGGGAGGTCTTTCATGTACCGCGGCAAAGACGTAATGTCTACCAACAGGCCTGGAGTTGCCTAGTCATTTAAGGAGTCTGCTACATGTATTATTATGAGTATGGGATCAGACAAAATAATAGGTGTGTGAATACTTTCATCATCTTCACCACAGAATGCACATTCAAAAGGTACTTTACCCAGACATTTGAAGTCTATCCATTGTTACAGGCCTTTGTTGAACAGACAGCCACAAATTCAATCTGAGATGAGGATGAAGTCAATTTTGCAAGGTAAATACTC-TTCTTTTGCAACTGATTCAGTCTTTGATTGCGAAAAACGAAATTACGATAGCTCAAGTTCAGTGAGCTTTAGGTATTGTATCTAGAAGAAGAAGGCTTTTTCTTTTGTACAGAAGTCATTCACCATTCCAATTTGGAATAGCAAGTGTAAGAGGAAGAAAATGATCCATAAATTTCTCTATCTTG-TTTTTTCCAAACTTCATTACTTTAATTGATTTCACTTCATTAAATAAACCATTTTGTATTTATCATATTTAT</genome_strand>
        <mrna_strand>GCAGCACAAGCTACACCCTGATCATATGCTTTCTTCCTGAGTCATTTATTCAAAAGGCGAAATCGACAACTCCTGGACAGACATATCGGCTAATACGACATTTTTCTCTGCGCAAGATAAATGAATAGCTCTTGTTTTCAGGGGAAAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCTTTCATGTA-CGCGGCAAAGACGTAATGTCTACCAACAGGCCTGGAGTTGCCTAGTCATTTAAAGAGTCTGCTACATG---CATTATGAGTATGGGATCAGGCAAAATAATAGGTGTGTGAATACTTTCATCATCTTCACCACAGAATGCACATTCAAAAGGTACTTTA-CCAGACATTTGAAGTCTATCCATTGTTACAAGCCTTTGTTGAACAGACAGCCACAGATTCAATCTGAGATGAGGATGAAGTCAAGTTTGCAAGGT-AATACTCTTTCTTTTGCAACTGATTCAGTCTTTGATTGCGAAAAATGAAATTACGATAGCTCAAGTTCAGTGAGCTTTAGGTATTGTATCTAGAAGAAGAAGGCTTTTTCTTTTGTACAGAAGTCATTCACCATTCCAATTTGGAATAGCAAGTGTAAGAGGAAGAAAATGATCCATAAATTTCTCTTTCTTGTTTTTTTCAAAACTTTATTAC-TTAATTGATTTCACTCCATTAAGTAAACCATTTTGTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537954" ref_strand="+" ref_description="SGN-E537954 [TUS-56-N4]">
      <seq>cggcagcagttgaacttatccaagctcggttatctgaaagaccttgtgaccctaggttatggtgttcccttggagatgttacaagtgatgataaatgctatgagaaagccctagaagtgtctgggaataagtcagctcgagcacagcgtgcccttgcccgtagtgcatacaacaggggggagtacgagaagtcaaaagatctatgggaatctgcaatggcaatgaattctatgtatccagatggatggtttgcacttggtgctgctgctttaaaggctagagatgttgagaaggcactggatggcttcacccgtgctgttcagcttgatcctgaaaatggagaggcttggaataatattgcttgcctgcatttggttaagaagaaaaacaaggaagcttttattgcattcaaggaagcattgaagctgaagcgaaacagctggcagatgtgggaaaattttagccgtgttgctgcagatattggaaatttcagtcaggcactggaagcagtacaaaaggtattggatatgacgaaaaagaagcgaatcgatgtcgaattactggagaggatgttgcaagagttggaattacggactgcaactagccattctgaatgcgatgctttgaggggtagcagtgactcttccgaggcgggctccgacatcattagtgttgatccattgaccagctcggacaaagatctgggcatagaacggnaaactgagcacttgattcagtcagtgggtaaaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47255" stop="39378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46955" g_stop="46895" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46894" i_stop="44940" i_length="1955">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44939" g_stop="44855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44665" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44664" g_stop="44606" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44605" i_stop="44509" i_length="97">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44508" g_stop="44439" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="275" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44438" i_stop="44290" i_length="149">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44289" g_stop="44198" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="367" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44197" i_stop="42025" i_length="2173">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42024" g_stop="41962" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="430" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41961" i_stop="41624" i_length="338">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41623" g_stop="41557" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="497" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41556" i_stop="39936" i_length="1621">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39935" g_stop="39678" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="755" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E537954" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46955" e_stop="46895"/>
          <exon e_start="44939" e_stop="44855"/>
          <exon e_start="44664" e_stop="44606"/>
          <exon e_start="44508" e_stop="44439"/>
          <exon e_start="44289" e_stop="44198"/>
          <exon e_start="42024" e_stop="41962"/>
          <exon e_start="41623" e_stop="41557"/>
          <exon e_start="39935" e_stop="39678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATGGTATACTGACCAAACTCTACCTTCCTTTTATCATTTTAACTGCTTTTCCTGTTTCTAATTTTGAATTTCTGCAAAAAGAAAAAGAAATACAAATCCTTCGAGTCATCAAAAGAGAACATGTGCATCTTTGATCTATACAAGGTATCAAGGGCATGATTTGGAGAACAGGAGGTTTAATGTTTTAATGATACAGTAATCAATTCACTTGTATCATGAAACTTATTTGTATAATTCAATGGCCTCTTGTTCAATAGTCCAATAAGCTGTCATAGTTTCATTTATCATACATGTAATCCAATGTTGTTATATGTCTGTGATATATGTTCATTTTGAACACCCGAAGCCTCCTTTATTAAATAGCTTGACCAATGAATTTGGAGGTTTTTTGGAAAAAGTACGACTATGAGAGCAAGATGTTGATCCTTGTAGCCCTTTTATGGAGTTTTGTCTTTCCGTGATATCTGATGAGGGATAGCATGAGATGATGTGACGTTGCTATCAATCTCCAAAAACTACTGCATATCTAGAGATGCGTTGCAAAAACTTTGTACTGAGACAAAGCTGTAGTGTTAGAATTTTTTCGGGCTTTAAACTTGAGTCAGAAATTATTATGCGAGTTTGACTAGTCAACAGTCCTTTTTGTTTTAAGAAATGACTTCTTTCACCATTTAGGTAACTGCCCATGGTTGTTTATGCTACAAAATTTCCTTATGTTTTAAGGTTAATTGGTAAAACTTAGACTTGAGCACTTTTGTCTGCATGTTACTGATGAGGTAAGATGATAAAAATTAACAAGTTGTAGTTTTTTTGATGACAGTGATGTCTGGGCTAGCATGCATGCACCTCGACTATTCGACTTGCTACTTGCTACTGCTTCATTGATTCATGAGTCATGAGTCATGTTAAGTTTGTATTTTTCGGGGGTAGCAAGAGATGAGACTATTATTCCTACGGTTGGTTACAGAACTTGGTCTCTGAATTATAATCATAACATTACTACTCCGGAACTAAGGTCAGAATCGGTGATCTTATTGGACAATTCTTATAGCAATCCCTTTTTCTAAGCGTTCCTCTCCCTCATGCTTGGCCCATTTTTCTTCATCTTGCCACCCCCAACTCTACCCTGCATTCACGATGACCTATTAGTTTGTTGTGTCTTGTATTCTGATATTAAGTTGTTATATTCTTTTTGTTTTTTTTGTGTCAATTGTAATAATAACCTTACTAATTGCCTCAGGGCTTTGGTGTAAAAGAAAAACACGTGATGTGATGTTTAGGTTAGGTTCACGTTACGGGTTTGAACCCTGCTTGCATATAAATGCCTGATATTTAAGTGGAGAAGGTAGAGGGGAGGACCCTCCACCTTTTGAACCTTGTGCCACTAGCTTTTGGTGATTTCTTGATTGCGAAAAAAAGTGAGAACCTTACTAATTGCTTCAGTTGAAGTTGTCTTTGCTACTGAATGTTTGATTTGTTGGCAAAATGTTACTTTTAGGACTCCGCTAACACTTCCTTGAGAAATCAAAATTTATCAACACAAAATGTCAAGGGTTATTTTGACCAAGTTCTTATCCCAGATTCAAGCCTTCCTATACTCATAAAAAGTTGCAATCCTATCAATTTTACCTTACTACATTCTAGCAGCAACGTGATCTTCCATGCACAGTCTCCTTGTGCTAATGATCTTCCCTATCTCTTCCACAAGAAAGGACTGTCAACGACAATGAGGTGTATTCACTTTGTAATTAGAAAAAAGGTCTTTGCTGGAGAAGCTTTTGCATTATTAAGTTGTTGGTCATCTTCCTCTCCATGCATTACAATGAATTCATTTATATTTATTAGATGCACCATTTTTCGTTTTTATACTTAACCCTGACTCTGTTACCATACATGTTAATTTATGTTTAGGTATAAATATAAATTATGTGGTATAATACCATTTAATCCTCTTTTAGGTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAGGTGAATCAGAATATCTTGTTGCCTTCCTTAGTGATTGCATATGTTTTTTCTATTTTCTCTCTTTCCTCGTCTTCTGAAATTCTTTGGGGTCCAAATTCTTTTTAATAGCCTACCTTAGTGATTGCAATTGTTTTTCTATTTTTTTTCCCTTGTCTTCTAACTTTTTTTGGGATCCAAATTCCTTTTACAGCGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATGGTTATCTGCATGTTTCCATTCACCTGATAATTGTTAAATATCAACTAATTTTTTCCCACTTATACACTGATTTGATCTATATATCCTTTATTTTCAGGGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAGGTCTGTATTTTCATTTGTATGCTGATTGTAATTACTCATGGGATGGCTATAAGCTGTAAGGGGATGCACATGATACTCTGTAGTGTTCATATCTCTTCCTTCTAGTATGCATTCCCTACATGATTTTTGCTTCATCTGGAATATTACAGGCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCTGTATGTTCTTTCGCCTTTATATTTTAGGAAATTTATAGGTCAGATGACATGTATTGGTCTTATTGGTTGTCTGTGTTTATTGGCTATCAAATAATGAATCCAATTATCTGTTGGACCAAAAGTCATTTATAGATTGGTCTGTCATCTAGTTCAGCAAATAAGTTAAACGACCCTTGTGAAAAGGAGAAGTAAGGAAGACACTTGGTATTATGGAATAGTAGCTAGTTGTTTGTACGTGTTTCAGTAAAACATGGATCATGTTCCTCAATAGTGTCCAGTACAGACAAGAAATTAGTAAATTTCAGCTGGTTCTTTTTCTTCTTCTACTCTCTTTTTACTTTTCCAAGAATTAGATTCTTGAAGAATTTGCAGCTAGCACAGTAGAGTTTCAGATTTCATCCAGTTTTTGAAGTGTTTCTTGTCATGGCCCAACTGTTATGATAGTTTGCAACTTCATATTTGCTACCTGTGAAGAGTGAATTTTAAGTAACTGAGATTGTGGCTGTAATGATAAAGCAACTCATTTTTTTTTAGAAAGGTAACATTTACTTCTATCTATCCACAGGTATACTAATATCGAAGTGTAGTCCCCCTCAAAAGAGTTCTACTTACATCATTCCTAAGATCTTCTAGTTACAGCCAATCAATAACATTAAACACATCTTCAGTATCTCCCATCACTACTTGCTTACACCAAAAATATGTCTTTATCTTCTGAATAGATTGTTCCGTTTTACTTCAAAACATCTTTGATTCCTTTCCTTCCAAACCACCAAATGCAAGCTGGGACAGTCCTCCATCTCTTCTCCTTTTTTCCTACATTTCCATCCCTGTTCCAGCATTGTAGGACTTTTATAATTCTCCCAGACTTTTTCCACTTGATCTTCCTCTTGTGGATGAACACCTGCCACAATTGATCTGTCCATTTGTTGTGTAAAAAAGAGATGGTTGACTGTCTCCACCTGTTCTTCACATAGATAGCATCTACAACATAGATTGGATTTCCTCTTGTTCAAGCTCTCATGTGTCAAGACTGCCTCCTTTGCCAAGAGCAATGTGAAGCAATTCACCTTTTGTAGGGAATTTCTGTTCTCTAGATCATCCTCCAGTGCCATCCTGCTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTAAATTCTCCCCTTCTCTCCCCCTTCCACACTAGTCTATCTTCCTCTCTTGTCAGATTGGTAGCCATATGCATTGTTTCATGAGAACTTGCTATTTTTGTCATTTCCCAATCACTTATGTTCCTTCTCAGAAACAGGTTTCGCCCTAGTCCAGTCCATAATTTTTTTTCTTGAATTTAGTAAGGTTGTATTATATCACAAAACAGCACATGGGTTGTACTGAAACCTTATATACAAAACCCCCAAATTCTTACTGCTCTATGGCTAATTGAGTCTAAAACATCAATTATAGTACAGGGAAAACATTTTTGAGTCCATAATGCTGCCACTGTTGCTTCTTGTGCTTCGCTCAGACTATGCAGTACAGGGAAAACATTTTTGAGTGTCTCCTGTCCACACCAAATGTCATTCCAGAATACTAATTTTTTTCCATTGCCCACCTTACAACTTGTTCTCTCCCTGACCAGCTGCCATATGTTCCTGATGGACCTCCATACACTACAATTATCAGGGTTGATCACCCACCTCTGTCATCCATTTGTCCTCCATTTATGGTGGTCACATAAGTAACTCTTGATAAGTGAGATCATTATACCTTATTAAAACAAGTTGAGATCATTGTTCCTTTTCAAATATAACTCGTGTACTTTTCTGATTTTCTTTTGAACTTATAAACTGATAACTACTGCAATAGGAATATTATCATTTAAATAGGTGGAGGTAAGCATGATGTTTGTTTTAGTTCGAGGCTACTAAGCATGTTAATGAAGGAAGAAACCGAGTGTAATGTACATCCTTACAAGCTATGGTAAGAAAAAACAACCATTGACATGATAAAGTTGCATCACAAGACGCGGAGGAGGGGGGGGGGTTACACAAAATACTGACACCTCTTTGTGGATTAAATCGATCCTGCTTGCATTACTTCTTTGTCCTTGGAAATGTCATAATAACTTTTTATTTCTTCTTTTGCTATCTTTTCATGTGTTTGGTTCTTGACCATGCAGGCATATGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAAGTACTTACTTCCTGCTATACTCTCCCTACATTTCATATTTTAATTTTTCTTCTGGTGTCCATATGTATGGCTTACACTTTCTTGGGGCTCTAAAAGTGGGAGGATATGAAACCCATCCTTTCCAATCTCTCTAGCCCAGCAATTTCTGACCCCCAGACTCACGCTTCTTTTACCACAACAAAACCCAGTTTTTCAACCCATCTACAGTTGGATAAATCTGAAAGTATACTTTTCGCTTCCTTTCCCCCCGGTACCAGAGCAATGGAAGAAAACACACTTAGTAAAATCATGCCGTCCCACTTCGAATTTTTTTGTTTGATTTTGGAGACCTTTTACAGGCGAGACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAGGTATAGTCAACATTTTATGCAAAATCTTTTTGAACACTTAGATAGTATCTCTAAGTCGGTTGCAACCATCATGTTTTTGATGATCTTTGATGGGATAGACTTTTCTTTATGTAACTGATCCCTCCATACAATTAATATAAGGAAAGATATTGAAAATAAAGTTAAAATCCATTATCCAGTCTTCTAAGATGTCCTTCAAATCACCATGTAAAGTCGAACTCCATAGAAAAATCTGAACTGTAGAGGAAATAAACAAACATAATACCCAGTAAAATCCCACAAGTGGGATTTGGGGAGGGTGAATGTACGCAAACCTTACCCTCTACCTTTATGGGGCAGAGAAGCTGTTTCCAATAAGCCCTCGGCTCAAAAGAGATGTCTTCAAAGCAGGATTGCAAGAAATATTGTATTTTTCACCAGAAGTCTAATAAGAGAGAAGGTTTTAAGTATCAGATCAGGTAAAGAAACTGGTGTGGCCTCTTCATAATTTTCAATTTATAGTGCATCCACTTTGACGGCCACATACTTCCAAATTTCAATATGTTGAAATGGTAAAAGGAAGTATCTGAAGTGTACACAAAGCAGAGTGACTCTATTACTTCAGAAGAATCAGAATTGGTGGGGCAAAAGTTACAGTCAGCTTTTTGTAACAGCTTAAGATTTTGGTTCACCAAGGCTAGCAATAGCATGCACTATAGAATCCCATTATATTTACTATCAATTAGCCATTTAAAACTTGGCTAATCAAGTATAGTTTCAGGACAGAGCCTTGCTGTTATGGAAATTTCCTCAGTATCAATTAGGTTCATGATGAGGGGGGGGGTTATCCCCCCCCCTAAAGGTCATAGTGCGACTAGTAGAAAAGAGAAGAAAGACTAGAGCACGAGGTACCTGATCATAGGCTTTCTCTAGGTCATTGAATATCATCTGGGATCCTTCTTTTATCCTTGTAAATTTTCCGTCTAGAAAAATATATAATCCATATTGTAGATTACCAAACTATTTCCCTGTCAATTTTGTTATGTGTCCTATATCTGTGCTTTATAATTTTTCTGGAAGTTCATTGTATGACTCATAAGTTCAAGACCATGATACTTCTTAAGACAAGTTTAAAATCTTATTTGTTGTTATACATATGCACCCTGGTACACTTTCTATACTCCCTTGGTATCTTTCTATTTCTTAATATATACTAATTTGCTTGATGTAAGTTATAATGTTCGGACCTCTTCAAGACTGCAAGACACTTCTGAAATTCTATAGGGGAACCAATTTTGATTGCGTGCCTCTTCATATTTTTCATGACATCATTTACTTCCGTGAACCTATTTCTATGAGTGTAGCTTAGATTTTGTCTTACATGATCTAAGAGAATCTAAAAGTCACCCCATGATTTAAATTGGGCAATTGACTAAGATAGCGTATCCACCTTCTGATCCAAGTATCTTAGTGCACGTGGTACTAATATAATCAAAGTAAATCATGATATGGTCATATGACGAGGCATTGTATATTCAATTATCCAAAAATGATTGGGAGATAGATACTCATAAGGCAGATGTGAGTCTGAAGTTTTATTTGCTGATGAAAAAGCTGAACTTGATTAGTTTCTTCGTTGAAGGCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTTTGAGGGGTAGCAGTGACTCTTCCGAGGCGGGCTCCGACATCATTAGTGTTGATCCATTGACCAGCTCGGACAAAGATCTGGCAATAGAACGGGAAACTGAGCACTTGATTCAGTCAGTGGGTAAAATCTTA</genome_strand>
        <mrna_strand>CGGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAG..............................................................................................................................................................................................CGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATG.................................................................................................GGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAG.....................................................................................................................................................GCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAA..................................................................................................................................................................................................................................................................................................................................................GCGAAACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTTTGAGGGGTAGCAGTGACTCTTCCGAGGCGGGCTCCGACATCATTAGTGTTGATCCATTGACCAGCTCGGACAAAGATCTGGGCATAGAACGGNAAACTGAGCACTTGATTCAGTCAGTGGGTAAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547972" ref_strand="+" ref_description="SGN-E547972 [TUS-56-M12]">
      <seq>cggcagcagttgaacttatccaagctcggttatctgaaagaccttgtgaccctaggttatggtgttcccttggagatgttacaagtgatgataaatgctatgagaaagccctagaagtgtctgggaataagtcagctcgagcacagcgtgcccttgcccgtagtgcatacaacaggggggagtacgagaagtcaaaagatctatgggaatctgcaatggcaatgaattctatgtatccagatggatggtttgcacttggtgctgctgctttaaaggctagagatgttgagaaggcactggatggcttcacccgtgctgttcagcttgatcctgaaaatggagaggcttggaataatattgcttgcctgcatttggttaagaagaaaaacaaggaagcttttattgcattcaaggaagcattgaagctgaagcgaaacagctggcagatgtgggaaaattttagccgtgttgctgcagatattggaaatttcagtcaggcactggaagcagtacaaaaggtattggatatgacgaaaaagaagcgaatcgatgtcgaattactggagaggatgttgcaagagttggaattacggactgcaactagccattctgaatgcgatgctttgaggggtagcagtgactcttccgaggcgggctccgacatcattagtgttgatccattgaccagctcggacaaagatctggcaatagaacgggaaactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47255" stop="39408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46955" g_stop="46895" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46894" i_stop="44940" i_length="1955">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44939" g_stop="44855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="146" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44665" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44664" g_stop="44606" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="205" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44605" i_stop="44509" i_length="97">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44508" g_stop="44439" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="275" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44438" i_stop="44290" i_length="149">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44289" g_stop="44198" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="367" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44197" i_stop="42025" i_length="2173">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42024" g_stop="41962" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="430" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41961" i_stop="41624" i_length="338">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41623" g_stop="41557" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="497" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41556" i_stop="39936" i_length="1621">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39935" g_stop="39708" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="725" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E547972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46955" e_stop="46895"/>
          <exon e_start="44939" e_stop="44855"/>
          <exon e_start="44664" e_stop="44606"/>
          <exon e_start="44508" e_stop="44439"/>
          <exon e_start="44289" e_stop="44198"/>
          <exon e_start="42024" e_stop="41962"/>
          <exon e_start="41623" e_stop="41557"/>
          <exon e_start="39935" e_stop="39708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATGGTATACTGACCAAACTCTACCTTCCTTTTATCATTTTAACTGCTTTTCCTGTTTCTAATTTTGAATTTCTGCAAAAAGAAAAAGAAATACAAATCCTTCGAGTCATCAAAAGAGAACATGTGCATCTTTGATCTATACAAGGTATCAAGGGCATGATTTGGAGAACAGGAGGTTTAATGTTTTAATGATACAGTAATCAATTCACTTGTATCATGAAACTTATTTGTATAATTCAATGGCCTCTTGTTCAATAGTCCAATAAGCTGTCATAGTTTCATTTATCATACATGTAATCCAATGTTGTTATATGTCTGTGATATATGTTCATTTTGAACACCCGAAGCCTCCTTTATTAAATAGCTTGACCAATGAATTTGGAGGTTTTTTGGAAAAAGTACGACTATGAGAGCAAGATGTTGATCCTTGTAGCCCTTTTATGGAGTTTTGTCTTTCCGTGATATCTGATGAGGGATAGCATGAGATGATGTGACGTTGCTATCAATCTCCAAAAACTACTGCATATCTAGAGATGCGTTGCAAAAACTTTGTACTGAGACAAAGCTGTAGTGTTAGAATTTTTTCGGGCTTTAAACTTGAGTCAGAAATTATTATGCGAGTTTGACTAGTCAACAGTCCTTTTTGTTTTAAGAAATGACTTCTTTCACCATTTAGGTAACTGCCCATGGTTGTTTATGCTACAAAATTTCCTTATGTTTTAAGGTTAATTGGTAAAACTTAGACTTGAGCACTTTTGTCTGCATGTTACTGATGAGGTAAGATGATAAAAATTAACAAGTTGTAGTTTTTTTGATGACAGTGATGTCTGGGCTAGCATGCATGCACCTCGACTATTCGACTTGCTACTTGCTACTGCTTCATTGATTCATGAGTCATGAGTCATGTTAAGTTTGTATTTTTCGGGGGTAGCAAGAGATGAGACTATTATTCCTACGGTTGGTTACAGAACTTGGTCTCTGAATTATAATCATAACATTACTACTCCGGAACTAAGGTCAGAATCGGTGATCTTATTGGACAATTCTTATAGCAATCCCTTTTTCTAAGCGTTCCTCTCCCTCATGCTTGGCCCATTTTTCTTCATCTTGCCACCCCCAACTCTACCCTGCATTCACGATGACCTATTAGTTTGTTGTGTCTTGTATTCTGATATTAAGTTGTTATATTCTTTTTGTTTTTTTTGTGTCAATTGTAATAATAACCTTACTAATTGCCTCAGGGCTTTGGTGTAAAAGAAAAACACGTGATGTGATGTTTAGGTTAGGTTCACGTTACGGGTTTGAACCCTGCTTGCATATAAATGCCTGATATTTAAGTGGAGAAGGTAGAGGGGAGGACCCTCCACCTTTTGAACCTTGTGCCACTAGCTTTTGGTGATTTCTTGATTGCGAAAAAAAGTGAGAACCTTACTAATTGCTTCAGTTGAAGTTGTCTTTGCTACTGAATGTTTGATTTGTTGGCAAAATGTTACTTTTAGGACTCCGCTAACACTTCCTTGAGAAATCAAAATTTATCAACACAAAATGTCAAGGGTTATTTTGACCAAGTTCTTATCCCAGATTCAAGCCTTCCTATACTCATAAAAAGTTGCAATCCTATCAATTTTACCTTACTACATTCTAGCAGCAACGTGATCTTCCATGCACAGTCTCCTTGTGCTAATGATCTTCCCTATCTCTTCCACAAGAAAGGACTGTCAACGACAATGAGGTGTATTCACTTTGTAATTAGAAAAAAGGTCTTTGCTGGAGAAGCTTTTGCATTATTAAGTTGTTGGTCATCTTCCTCTCCATGCATTACAATGAATTCATTTATATTTATTAGATGCACCATTTTTCGTTTTTATACTTAACCCTGACTCTGTTACCATACATGTTAATTTATGTTTAGGTATAAATATAAATTATGTGGTATAATACCATTTAATCCTCTTTTAGGTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAGGTGAATCAGAATATCTTGTTGCCTTCCTTAGTGATTGCATATGTTTTTTCTATTTTCTCTCTTTCCTCGTCTTCTGAAATTCTTTGGGGTCCAAATTCTTTTTAATAGCCTACCTTAGTGATTGCAATTGTTTTTCTATTTTTTTTCCCTTGTCTTCTAACTTTTTTTGGGATCCAAATTCCTTTTACAGCGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATGGTTATCTGCATGTTTCCATTCACCTGATAATTGTTAAATATCAACTAATTTTTTCCCACTTATACACTGATTTGATCTATATATCCTTTATTTTCAGGGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAGGTCTGTATTTTCATTTGTATGCTGATTGTAATTACTCATGGGATGGCTATAAGCTGTAAGGGGATGCACATGATACTCTGTAGTGTTCATATCTCTTCCTTCTAGTATGCATTCCCTACATGATTTTTGCTTCATCTGGAATATTACAGGCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCTGTATGTTCTTTCGCCTTTATATTTTAGGAAATTTATAGGTCAGATGACATGTATTGGTCTTATTGGTTGTCTGTGTTTATTGGCTATCAAATAATGAATCCAATTATCTGTTGGACCAAAAGTCATTTATAGATTGGTCTGTCATCTAGTTCAGCAAATAAGTTAAACGACCCTTGTGAAAAGGAGAAGTAAGGAAGACACTTGGTATTATGGAATAGTAGCTAGTTGTTTGTACGTGTTTCAGTAAAACATGGATCATGTTCCTCAATAGTGTCCAGTACAGACAAGAAATTAGTAAATTTCAGCTGGTTCTTTTTCTTCTTCTACTCTCTTTTTACTTTTCCAAGAATTAGATTCTTGAAGAATTTGCAGCTAGCACAGTAGAGTTTCAGATTTCATCCAGTTTTTGAAGTGTTTCTTGTCATGGCCCAACTGTTATGATAGTTTGCAACTTCATATTTGCTACCTGTGAAGAGTGAATTTTAAGTAACTGAGATTGTGGCTGTAATGATAAAGCAACTCATTTTTTTTTAGAAAGGTAACATTTACTTCTATCTATCCACAGGTATACTAATATCGAAGTGTAGTCCCCCTCAAAAGAGTTCTACTTACATCATTCCTAAGATCTTCTAGTTACAGCCAATCAATAACATTAAACACATCTTCAGTATCTCCCATCACTACTTGCTTACACCAAAAATATGTCTTTATCTTCTGAATAGATTGTTCCGTTTTACTTCAAAACATCTTTGATTCCTTTCCTTCCAAACCACCAAATGCAAGCTGGGACAGTCCTCCATCTCTTCTCCTTTTTTCCTACATTTCCATCCCTGTTCCAGCATTGTAGGACTTTTATAATTCTCCCAGACTTTTTCCACTTGATCTTCCTCTTGTGGATGAACACCTGCCACAATTGATCTGTCCATTTGTTGTGTAAAAAAGAGATGGTTGACTGTCTCCACCTGTTCTTCACATAGATAGCATCTACAACATAGATTGGATTTCCTCTTGTTCAAGCTCTCATGTGTCAAGACTGCCTCCTTTGCCAAGAGCAATGTGAAGCAATTCACCTTTTGTAGGGAATTTCTGTTCTCTAGATCATCCTCCAGTGCCATCCTGCTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTAAATTCTCCCCTTCTCTCCCCCTTCCACACTAGTCTATCTTCCTCTCTTGTCAGATTGGTAGCCATATGCATTGTTTCATGAGAACTTGCTATTTTTGTCATTTCCCAATCACTTATGTTCCTTCTCAGAAACAGGTTTCGCCCTAGTCCAGTCCATAATTTTTTTTCTTGAATTTAGTAAGGTTGTATTATATCACAAAACAGCACATGGGTTGTACTGAAACCTTATATACAAAACCCCCAAATTCTTACTGCTCTATGGCTAATTGAGTCTAAAACATCAATTATAGTACAGGGAAAACATTTTTGAGTCCATAATGCTGCCACTGTTGCTTCTTGTGCTTCGCTCAGACTATGCAGTACAGGGAAAACATTTTTGAGTGTCTCCTGTCCACACCAAATGTCATTCCAGAATACTAATTTTTTTCCATTGCCCACCTTACAACTTGTTCTCTCCCTGACCAGCTGCCATATGTTCCTGATGGACCTCCATACACTACAATTATCAGGGTTGATCACCCACCTCTGTCATCCATTTGTCCTCCATTTATGGTGGTCACATAAGTAACTCTTGATAAGTGAGATCATTATACCTTATTAAAACAAGTTGAGATCATTGTTCCTTTTCAAATATAACTCGTGTACTTTTCTGATTTTCTTTTGAACTTATAAACTGATAACTACTGCAATAGGAATATTATCATTTAAATAGGTGGAGGTAAGCATGATGTTTGTTTTAGTTCGAGGCTACTAAGCATGTTAATGAAGGAAGAAACCGAGTGTAATGTACATCCTTACAAGCTATGGTAAGAAAAAACAACCATTGACATGATAAAGTTGCATCACAAGACGCGGAGGAGGGGGGGGGGTTACACAAAATACTGACACCTCTTTGTGGATTAAATCGATCCTGCTTGCATTACTTCTTTGTCCTTGGAAATGTCATAATAACTTTTTATTTCTTCTTTTGCTATCTTTTCATGTGTTTGGTTCTTGACCATGCAGGCATATGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAAGTACTTACTTCCTGCTATACTCTCCCTACATTTCATATTTTAATTTTTCTTCTGGTGTCCATATGTATGGCTTACACTTTCTTGGGGCTCTAAAAGTGGGAGGATATGAAACCCATCCTTTCCAATCTCTCTAGCCCAGCAATTTCTGACCCCCAGACTCACGCTTCTTTTACCACAACAAAACCCAGTTTTTCAACCCATCTACAGTTGGATAAATCTGAAAGTATACTTTTCGCTTCCTTTCCCCCCGGTACCAGAGCAATGGAAGAAAACACACTTAGTAAAATCATGCCGTCCCACTTCGAATTTTTTTGTTTGATTTTGGAGACCTTTTACAGGCGAGACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAGGTATAGTCAACATTTTATGCAAAATCTTTTTGAACACTTAGATAGTATCTCTAAGTCGGTTGCAACCATCATGTTTTTGATGATCTTTGATGGGATAGACTTTTCTTTATGTAACTGATCCCTCCATACAATTAATATAAGGAAAGATATTGAAAATAAAGTTAAAATCCATTATCCAGTCTTCTAAGATGTCCTTCAAATCACCATGTAAAGTCGAACTCCATAGAAAAATCTGAACTGTAGAGGAAATAAACAAACATAATACCCAGTAAAATCCCACAAGTGGGATTTGGGGAGGGTGAATGTACGCAAACCTTACCCTCTACCTTTATGGGGCAGAGAAGCTGTTTCCAATAAGCCCTCGGCTCAAAAGAGATGTCTTCAAAGCAGGATTGCAAGAAATATTGTATTTTTCACCAGAAGTCTAATAAGAGAGAAGGTTTTAAGTATCAGATCAGGTAAAGAAACTGGTGTGGCCTCTTCATAATTTTCAATTTATAGTGCATCCACTTTGACGGCCACATACTTCCAAATTTCAATATGTTGAAATGGTAAAAGGAAGTATCTGAAGTGTACACAAAGCAGAGTGACTCTATTACTTCAGAAGAATCAGAATTGGTGGGGCAAAAGTTACAGTCAGCTTTTTGTAACAGCTTAAGATTTTGGTTCACCAAGGCTAGCAATAGCATGCACTATAGAATCCCATTATATTTACTATCAATTAGCCATTTAAAACTTGGCTAATCAAGTATAGTTTCAGGACAGAGCCTTGCTGTTATGGAAATTTCCTCAGTATCAATTAGGTTCATGATGAGGGGGGGGGTTATCCCCCCCCCTAAAGGTCATAGTGCGACTAGTAGAAAAGAGAAGAAAGACTAGAGCACGAGGTACCTGATCATAGGCTTTCTCTAGGTCATTGAATATCATCTGGGATCCTTCTTTTATCCTTGTAAATTTTCCGTCTAGAAAAATATATAATCCATATTGTAGATTACCAAACTATTTCCCTGTCAATTTTGTTATGTGTCCTATATCTGTGCTTTATAATTTTTCTGGAAGTTCATTGTATGACTCATAAGTTCAAGACCATGATACTTCTTAAGACAAGTTTAAAATCTTATTTGTTGTTATACATATGCACCCTGGTACACTTTCTATACTCCCTTGGTATCTTTCTATTTCTTAATATATACTAATTTGCTTGATGTAAGTTATAATGTTCGGACCTCTTCAAGACTGCAAGACACTTCTGAAATTCTATAGGGGAACCAATTTTGATTGCGTGCCTCTTCATATTTTTCATGACATCATTTACTTCCGTGAACCTATTTCTATGAGTGTAGCTTAGATTTTGTCTTACATGATCTAAGAGAATCTAAAAGTCACCCCATGATTTAAATTGGGCAATTGACTAAGATAGCGTATCCACCTTCTGATCCAAGTATCTTAGTGCACGTGGTACTAATATAATCAAAGTAAATCATGATATGGTCATATGACGAGGCATTGTATATTCAATTATCCAAAAATGATTGGGAGATAGATACTCATAAGGCAGATGTGAGTCTGAAGTTTTATTTGCTGATGAAAAAGCTGAACTTGATTAGTTTCTTCGTTGAAGGCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTTTGAGGGGTAGCAGTGACTCTTCCGAGGCGGGCTCCGACATCATTAGTGTTGATCCATTGACCAGCTCGGACAAAGATCTGGCAATAGAACGGGAAACTGAG</genome_strand>
        <mrna_strand>CGGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAG..............................................................................................................................................................................................CGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATG.................................................................................................GGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAG.....................................................................................................................................................GCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAA..................................................................................................................................................................................................................................................................................................................................................GCGAAACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTTTGAGGGGTAGCAGTGACTCTTCCGAGGCGGGCTCCGACATCATTAGTGTTGATCCATTGACCAGCTCGGACAAAGATCTGGCAATAGAACGGGAAACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265842" ref_strand="+" ref_description="SGN-E265842 [cLEI-11-I8]">
      <seq>ggcagcagttgaacttatccaagctcggttatctgaaagaccttgtgaccctaggttatggtgttcccttggagatgttacaagtgatgataaatgctatgagaaagccctagaagtgtctgggaataagtcagctcgagcacagcgtgcccttgcccgtagtgcatacaacaggggggagtacgagaagtcaaaagatctatgggaatctgcaatggcaatgaattctatgtatccagatggatggtttgcacttggtgctgctgctttaaaggctagagatgttgagaaggcactggatggcttcacccgtgctgttcagcttgatcctgaaaatggagaggcttggaataatattgcttgcctgcatttggttaagaagaaaaacaaggaagcttttattgcattcaaggaagcattgaagctgaagcgaaacagctggcagatgtgggaaaattttagccgtgttgctgcagatattggaaatttcagtcaggcactggaagcagtacaaaaggtattggatatgacgaaaaagaagcgaatcgatgtcgaattactggagaggatgttgcaagagttggaattacggactgcaactagccattctgaatgcgatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47254" stop="39509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46954" g_stop="46895" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46894" i_stop="44940" i_length="1955">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44939" g_stop="44855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44665" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44664" g_stop="44606" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44605" i_stop="44509" i_length="97">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44508" g_stop="44439" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="274" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44438" i_stop="44290" i_length="149">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44289" g_stop="44198" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="366" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44197" i_stop="42025" i_length="2173">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42024" g_stop="41962" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="429" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41961" i_stop="41624" i_length="338">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41623" g_stop="41557" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="496" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41556" i_stop="39936" i_length="1621">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39935" g_stop="39809" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="623" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E265842" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46954" e_stop="46895"/>
          <exon e_start="44939" e_stop="44855"/>
          <exon e_start="44664" e_stop="44606"/>
          <exon e_start="44508" e_stop="44439"/>
          <exon e_start="44289" e_stop="44198"/>
          <exon e_start="42024" e_stop="41962"/>
          <exon e_start="41623" e_stop="41557"/>
          <exon e_start="39935" e_stop="39809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATGGTATACTGACCAAACTCTACCTTCCTTTTATCATTTTAACTGCTTTTCCTGTTTCTAATTTTGAATTTCTGCAAAAAGAAAAAGAAATACAAATCCTTCGAGTCATCAAAAGAGAACATGTGCATCTTTGATCTATACAAGGTATCAAGGGCATGATTTGGAGAACAGGAGGTTTAATGTTTTAATGATACAGTAATCAATTCACTTGTATCATGAAACTTATTTGTATAATTCAATGGCCTCTTGTTCAATAGTCCAATAAGCTGTCATAGTTTCATTTATCATACATGTAATCCAATGTTGTTATATGTCTGTGATATATGTTCATTTTGAACACCCGAAGCCTCCTTTATTAAATAGCTTGACCAATGAATTTGGAGGTTTTTTGGAAAAAGTACGACTATGAGAGCAAGATGTTGATCCTTGTAGCCCTTTTATGGAGTTTTGTCTTTCCGTGATATCTGATGAGGGATAGCATGAGATGATGTGACGTTGCTATCAATCTCCAAAAACTACTGCATATCTAGAGATGCGTTGCAAAAACTTTGTACTGAGACAAAGCTGTAGTGTTAGAATTTTTTCGGGCTTTAAACTTGAGTCAGAAATTATTATGCGAGTTTGACTAGTCAACAGTCCTTTTTGTTTTAAGAAATGACTTCTTTCACCATTTAGGTAACTGCCCATGGTTGTTTATGCTACAAAATTTCCTTATGTTTTAAGGTTAATTGGTAAAACTTAGACTTGAGCACTTTTGTCTGCATGTTACTGATGAGGTAAGATGATAAAAATTAACAAGTTGTAGTTTTTTTGATGACAGTGATGTCTGGGCTAGCATGCATGCACCTCGACTATTCGACTTGCTACTTGCTACTGCTTCATTGATTCATGAGTCATGAGTCATGTTAAGTTTGTATTTTTCGGGGGTAGCAAGAGATGAGACTATTATTCCTACGGTTGGTTACAGAACTTGGTCTCTGAATTATAATCATAACATTACTACTCCGGAACTAAGGTCAGAATCGGTGATCTTATTGGACAATTCTTATAGCAATCCCTTTTTCTAAGCGTTCCTCTCCCTCATGCTTGGCCCATTTTTCTTCATCTTGCCACCCCCAACTCTACCCTGCATTCACGATGACCTATTAGTTTGTTGTGTCTTGTATTCTGATATTAAGTTGTTATATTCTTTTTGTTTTTTTTGTGTCAATTGTAATAATAACCTTACTAATTGCCTCAGGGCTTTGGTGTAAAAGAAAAACACGTGATGTGATGTTTAGGTTAGGTTCACGTTACGGGTTTGAACCCTGCTTGCATATAAATGCCTGATATTTAAGTGGAGAAGGTAGAGGGGAGGACCCTCCACCTTTTGAACCTTGTGCCACTAGCTTTTGGTGATTTCTTGATTGCGAAAAAAAGTGAGAACCTTACTAATTGCTTCAGTTGAAGTTGTCTTTGCTACTGAATGTTTGATTTGTTGGCAAAATGTTACTTTTAGGACTCCGCTAACACTTCCTTGAGAAATCAAAATTTATCAACACAAAATGTCAAGGGTTATTTTGACCAAGTTCTTATCCCAGATTCAAGCCTTCCTATACTCATAAAAAGTTGCAATCCTATCAATTTTACCTTACTACATTCTAGCAGCAACGTGATCTTCCATGCACAGTCTCCTTGTGCTAATGATCTTCCCTATCTCTTCCACAAGAAAGGACTGTCAACGACAATGAGGTGTATTCACTTTGTAATTAGAAAAAAGGTCTTTGCTGGAGAAGCTTTTGCATTATTAAGTTGTTGGTCATCTTCCTCTCCATGCATTACAATGAATTCATTTATATTTATTAGATGCACCATTTTTCGTTTTTATACTTAACCCTGACTCTGTTACCATACATGTTAATTTATGTTTAGGTATAAATATAAATTATGTGGTATAATACCATTTAATCCTCTTTTAGGTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAGGTGAATCAGAATATCTTGTTGCCTTCCTTAGTGATTGCATATGTTTTTTCTATTTTCTCTCTTTCCTCGTCTTCTGAAATTCTTTGGGGTCCAAATTCTTTTTAATAGCCTACCTTAGTGATTGCAATTGTTTTTCTATTTTTTTTCCCTTGTCTTCTAACTTTTTTTGGGATCCAAATTCCTTTTACAGCGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATGGTTATCTGCATGTTTCCATTCACCTGATAATTGTTAAATATCAACTAATTTTTTCCCACTTATACACTGATTTGATCTATATATCCTTTATTTTCAGGGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAGGTCTGTATTTTCATTTGTATGCTGATTGTAATTACTCATGGGATGGCTATAAGCTGTAAGGGGATGCACATGATACTCTGTAGTGTTCATATCTCTTCCTTCTAGTATGCATTCCCTACATGATTTTTGCTTCATCTGGAATATTACAGGCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCTGTATGTTCTTTCGCCTTTATATTTTAGGAAATTTATAGGTCAGATGACATGTATTGGTCTTATTGGTTGTCTGTGTTTATTGGCTATCAAATAATGAATCCAATTATCTGTTGGACCAAAAGTCATTTATAGATTGGTCTGTCATCTAGTTCAGCAAATAAGTTAAACGACCCTTGTGAAAAGGAGAAGTAAGGAAGACACTTGGTATTATGGAATAGTAGCTAGTTGTTTGTACGTGTTTCAGTAAAACATGGATCATGTTCCTCAATAGTGTCCAGTACAGACAAGAAATTAGTAAATTTCAGCTGGTTCTTTTTCTTCTTCTACTCTCTTTTTACTTTTCCAAGAATTAGATTCTTGAAGAATTTGCAGCTAGCACAGTAGAGTTTCAGATTTCATCCAGTTTTTGAAGTGTTTCTTGTCATGGCCCAACTGTTATGATAGTTTGCAACTTCATATTTGCTACCTGTGAAGAGTGAATTTTAAGTAACTGAGATTGTGGCTGTAATGATAAAGCAACTCATTTTTTTTTAGAAAGGTAACATTTACTTCTATCTATCCACAGGTATACTAATATCGAAGTGTAGTCCCCCTCAAAAGAGTTCTACTTACATCATTCCTAAGATCTTCTAGTTACAGCCAATCAATAACATTAAACACATCTTCAGTATCTCCCATCACTACTTGCTTACACCAAAAATATGTCTTTATCTTCTGAATAGATTGTTCCGTTTTACTTCAAAACATCTTTGATTCCTTTCCTTCCAAACCACCAAATGCAAGCTGGGACAGTCCTCCATCTCTTCTCCTTTTTTCCTACATTTCCATCCCTGTTCCAGCATTGTAGGACTTTTATAATTCTCCCAGACTTTTTCCACTTGATCTTCCTCTTGTGGATGAACACCTGCCACAATTGATCTGTCCATTTGTTGTGTAAAAAAGAGATGGTTGACTGTCTCCACCTGTTCTTCACATAGATAGCATCTACAACATAGATTGGATTTCCTCTTGTTCAAGCTCTCATGTGTCAAGACTGCCTCCTTTGCCAAGAGCAATGTGAAGCAATTCACCTTTTGTAGGGAATTTCTGTTCTCTAGATCATCCTCCAGTGCCATCCTGCTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTAAATTCTCCCCTTCTCTCCCCCTTCCACACTAGTCTATCTTCCTCTCTTGTCAGATTGGTAGCCATATGCATTGTTTCATGAGAACTTGCTATTTTTGTCATTTCCCAATCACTTATGTTCCTTCTCAGAAACAGGTTTCGCCCTAGTCCAGTCCATAATTTTTTTTCTTGAATTTAGTAAGGTTGTATTATATCACAAAACAGCACATGGGTTGTACTGAAACCTTATATACAAAACCCCCAAATTCTTACTGCTCTATGGCTAATTGAGTCTAAAACATCAATTATAGTACAGGGAAAACATTTTTGAGTCCATAATGCTGCCACTGTTGCTTCTTGTGCTTCGCTCAGACTATGCAGTACAGGGAAAACATTTTTGAGTGTCTCCTGTCCACACCAAATGTCATTCCAGAATACTAATTTTTTTCCATTGCCCACCTTACAACTTGTTCTCTCCCTGACCAGCTGCCATATGTTCCTGATGGACCTCCATACACTACAATTATCAGGGTTGATCACCCACCTCTGTCATCCATTTGTCCTCCATTTATGGTGGTCACATAAGTAACTCTTGATAAGTGAGATCATTATACCTTATTAAAACAAGTTGAGATCATTGTTCCTTTTCAAATATAACTCGTGTACTTTTCTGATTTTCTTTTGAACTTATAAACTGATAACTACTGCAATAGGAATATTATCATTTAAATAGGTGGAGGTAAGCATGATGTTTGTTTTAGTTCGAGGCTACTAAGCATGTTAATGAAGGAAGAAACCGAGTGTAATGTACATCCTTACAAGCTATGGTAAGAAAAAACAACCATTGACATGATAAAGTTGCATCACAAGACGCGGAGGAGGGGGGGGGGTTACACAAAATACTGACACCTCTTTGTGGATTAAATCGATCCTGCTTGCATTACTTCTTTGTCCTTGGAAATGTCATAATAACTTTTTATTTCTTCTTTTGCTATCTTTTCATGTGTTTGGTTCTTGACCATGCAGGCATATGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAAGTACTTACTTCCTGCTATACTCTCCCTACATTTCATATTTTAATTTTTCTTCTGGTGTCCATATGTATGGCTTACACTTTCTTGGGGCTCTAAAAGTGGGAGGATATGAAACCCATCCTTTCCAATCTCTCTAGCCCAGCAATTTCTGACCCCCAGACTCACGCTTCTTTTACCACAACAAAACCCAGTTTTTCAACCCATCTACAGTTGGATAAATCTGAAAGTATACTTTTCGCTTCCTTTCCCCCCGGTACCAGAGCAATGGAAGAAAACACACTTAGTAAAATCATGCCGTCCCACTTCGAATTTTTTTGTTTGATTTTGGAGACCTTTTACAGGCGAGACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAGGTATAGTCAACATTTTATGCAAAATCTTTTTGAACACTTAGATAGTATCTCTAAGTCGGTTGCAACCATCATGTTTTTGATGATCTTTGATGGGATAGACTTTTCTTTATGTAACTGATCCCTCCATACAATTAATATAAGGAAAGATATTGAAAATAAAGTTAAAATCCATTATCCAGTCTTCTAAGATGTCCTTCAAATCACCATGTAAAGTCGAACTCCATAGAAAAATCTGAACTGTAGAGGAAATAAACAAACATAATACCCAGTAAAATCCCACAAGTGGGATTTGGGGAGGGTGAATGTACGCAAACCTTACCCTCTACCTTTATGGGGCAGAGAAGCTGTTTCCAATAAGCCCTCGGCTCAAAAGAGATGTCTTCAAAGCAGGATTGCAAGAAATATTGTATTTTTCACCAGAAGTCTAATAAGAGAGAAGGTTTTAAGTATCAGATCAGGTAAAGAAACTGGTGTGGCCTCTTCATAATTTTCAATTTATAGTGCATCCACTTTGACGGCCACATACTTCCAAATTTCAATATGTTGAAATGGTAAAAGGAAGTATCTGAAGTGTACACAAAGCAGAGTGACTCTATTACTTCAGAAGAATCAGAATTGGTGGGGCAAAAGTTACAGTCAGCTTTTTGTAACAGCTTAAGATTTTGGTTCACCAAGGCTAGCAATAGCATGCACTATAGAATCCCATTATATTTACTATCAATTAGCCATTTAAAACTTGGCTAATCAAGTATAGTTTCAGGACAGAGCCTTGCTGTTATGGAAATTTCCTCAGTATCAATTAGGTTCATGATGAGGGGGGGGGTTATCCCCCCCCCTAAAGGTCATAGTGCGACTAGTAGAAAAGAGAAGAAAGACTAGAGCACGAGGTACCTGATCATAGGCTTTCTCTAGGTCATTGAATATCATCTGGGATCCTTCTTTTATCCTTGTAAATTTTCCGTCTAGAAAAATATATAATCCATATTGTAGATTACCAAACTATTTCCCTGTCAATTTTGTTATGTGTCCTATATCTGTGCTTTATAATTTTTCTGGAAGTTCATTGTATGACTCATAAGTTCAAGACCATGATACTTCTTAAGACAAGTTTAAAATCTTATTTGTTGTTATACATATGCACCCTGGTACACTTTCTATACTCCCTTGGTATCTTTCTATTTCTTAATATATACTAATTTGCTTGATGTAAGTTATAATGTTCGGACCTCTTCAAGACTGCAAGACACTTCTGAAATTCTATAGGGGAACCAATTTTGATTGCGTGCCTCTTCATATTTTTCATGACATCATTTACTTCCGTGAACCTATTTCTATGAGTGTAGCTTAGATTTTGTCTTACATGATCTAAGAGAATCTAAAAGTCACCCCATGATTTAAATTGGGCAATTGACTAAGATAGCGTATCCACCTTCTGATCCAAGTATCTTAGTGCACGTGGTACTAATATAATCAAAGTAAATCATGATATGGTCATATGACGAGGCATTGTATATTCAATTATCCAAAAATGATTGGGAGATAGATACTCATAAGGCAGATGTGAGTCTGAAGTTTTATTTGCTGATGAAAAAGCTGAACTTGATTAGTTTCTTCGTTGAAGGCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTT</genome_strand>
        <mrna_strand>GGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAG..............................................................................................................................................................................................CGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATG.................................................................................................GGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAG.....................................................................................................................................................GCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAA..................................................................................................................................................................................................................................................................................................................................................GCGAAACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265697" ref_strand="+" ref_description="SGN-E265697 [cLEI-11-C5]">
      <seq>ggcagcagttgaacttatccaagctcggttatctgaaagaccttgtgaccctaggttatggtgttcccttggagatgttacaagtgatgataaatgctatgagaaagccctagaagtgtctgggaataagtcagctcgagcacagcgtgcccttgcccgtagtgcatacaacaggggggagtacgagaagtcaaaagatctatgggaatctgcaatggcaatgaattctatgtatccagatggatggtttgcacttggtgctgctgctttaaaggctagagatgttgagaaggcactggatggcttcacccgtgctgttcagcttgatcctgaaaatggagaggcttggaataatattgcttgcctgcattgggttaagaagaaaaacagggaagcttttattgcattcaaggaagcattgaagctgaagcgaaacagctggcagatgtgggaaaattttagccgtgttgctgcagatattggaaatttcagtcaggcactggaagcagtacaaaaggtattggatatgacgaaaaagaagcgaatcgatgtcgaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47254" stop="39571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46954" g_stop="46895" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46894" i_stop="44940" i_length="1955">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44939" g_stop="44855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="145" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44665" i_length="190">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44664" g_stop="44606" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="204" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44605" i_stop="44509" i_length="97">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44508" g_stop="44439" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="274" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44438" i_stop="44290" i_length="149">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44289" g_stop="44198" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="366" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44197" i_stop="42025" i_length="2173">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42024" g_stop="41962" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="429" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41961" i_stop="41624" i_length="338">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41623" g_stop="41557" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="496" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41556" i_stop="39936" i_length="1621">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39935" g_stop="39871" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="561" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E265697" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46954" e_stop="46895"/>
          <exon e_start="44939" e_stop="44855"/>
          <exon e_start="44664" e_stop="44606"/>
          <exon e_start="44508" e_stop="44439"/>
          <exon e_start="44289" e_stop="44198"/>
          <exon e_start="42024" e_stop="41962"/>
          <exon e_start="41623" e_stop="41557"/>
          <exon e_start="39935" e_stop="39871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATGGTATACTGACCAAACTCTACCTTCCTTTTATCATTTTAACTGCTTTTCCTGTTTCTAATTTTGAATTTCTGCAAAAAGAAAAAGAAATACAAATCCTTCGAGTCATCAAAAGAGAACATGTGCATCTTTGATCTATACAAGGTATCAAGGGCATGATTTGGAGAACAGGAGGTTTAATGTTTTAATGATACAGTAATCAATTCACTTGTATCATGAAACTTATTTGTATAATTCAATGGCCTCTTGTTCAATAGTCCAATAAGCTGTCATAGTTTCATTTATCATACATGTAATCCAATGTTGTTATATGTCTGTGATATATGTTCATTTTGAACACCCGAAGCCTCCTTTATTAAATAGCTTGACCAATGAATTTGGAGGTTTTTTGGAAAAAGTACGACTATGAGAGCAAGATGTTGATCCTTGTAGCCCTTTTATGGAGTTTTGTCTTTCCGTGATATCTGATGAGGGATAGCATGAGATGATGTGACGTTGCTATCAATCTCCAAAAACTACTGCATATCTAGAGATGCGTTGCAAAAACTTTGTACTGAGACAAAGCTGTAGTGTTAGAATTTTTTCGGGCTTTAAACTTGAGTCAGAAATTATTATGCGAGTTTGACTAGTCAACAGTCCTTTTTGTTTTAAGAAATGACTTCTTTCACCATTTAGGTAACTGCCCATGGTTGTTTATGCTACAAAATTTCCTTATGTTTTAAGGTTAATTGGTAAAACTTAGACTTGAGCACTTTTGTCTGCATGTTACTGATGAGGTAAGATGATAAAAATTAACAAGTTGTAGTTTTTTTGATGACAGTGATGTCTGGGCTAGCATGCATGCACCTCGACTATTCGACTTGCTACTTGCTACTGCTTCATTGATTCATGAGTCATGAGTCATGTTAAGTTTGTATTTTTCGGGGGTAGCAAGAGATGAGACTATTATTCCTACGGTTGGTTACAGAACTTGGTCTCTGAATTATAATCATAACATTACTACTCCGGAACTAAGGTCAGAATCGGTGATCTTATTGGACAATTCTTATAGCAATCCCTTTTTCTAAGCGTTCCTCTCCCTCATGCTTGGCCCATTTTTCTTCATCTTGCCACCCCCAACTCTACCCTGCATTCACGATGACCTATTAGTTTGTTGTGTCTTGTATTCTGATATTAAGTTGTTATATTCTTTTTGTTTTTTTTGTGTCAATTGTAATAATAACCTTACTAATTGCCTCAGGGCTTTGGTGTAAAAGAAAAACACGTGATGTGATGTTTAGGTTAGGTTCACGTTACGGGTTTGAACCCTGCTTGCATATAAATGCCTGATATTTAAGTGGAGAAGGTAGAGGGGAGGACCCTCCACCTTTTGAACCTTGTGCCACTAGCTTTTGGTGATTTCTTGATTGCGAAAAAAAGTGAGAACCTTACTAATTGCTTCAGTTGAAGTTGTCTTTGCTACTGAATGTTTGATTTGTTGGCAAAATGTTACTTTTAGGACTCCGCTAACACTTCCTTGAGAAATCAAAATTTATCAACACAAAATGTCAAGGGTTATTTTGACCAAGTTCTTATCCCAGATTCAAGCCTTCCTATACTCATAAAAAGTTGCAATCCTATCAATTTTACCTTACTACATTCTAGCAGCAACGTGATCTTCCATGCACAGTCTCCTTGTGCTAATGATCTTCCCTATCTCTTCCACAAGAAAGGACTGTCAACGACAATGAGGTGTATTCACTTTGTAATTAGAAAAAAGGTCTTTGCTGGAGAAGCTTTTGCATTATTAAGTTGTTGGTCATCTTCCTCTCCATGCATTACAATGAATTCATTTATATTTATTAGATGCACCATTTTTCGTTTTTATACTTAACCCTGACTCTGTTACCATACATGTTAATTTATGTTTAGGTATAAATATAAATTATGTGGTATAATACCATTTAATCCTCTTTTAGGTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAGGTGAATCAGAATATCTTGTTGCCTTCCTTAGTGATTGCATATGTTTTTTCTATTTTCTCTCTTTCCTCGTCTTCTGAAATTCTTTGGGGTCCAAATTCTTTTTAATAGCCTACCTTAGTGATTGCAATTGTTTTTCTATTTTTTTTCCCTTGTCTTCTAACTTTTTTTGGGATCCAAATTCCTTTTACAGCGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATGGTTATCTGCATGTTTCCATTCACCTGATAATTGTTAAATATCAACTAATTTTTTCCCACTTATACACTGATTTGATCTATATATCCTTTATTTTCAGGGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAGGTCTGTATTTTCATTTGTATGCTGATTGTAATTACTCATGGGATGGCTATAAGCTGTAAGGGGATGCACATGATACTCTGTAGTGTTCATATCTCTTCCTTCTAGTATGCATTCCCTACATGATTTTTGCTTCATCTGGAATATTACAGGCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCTGTATGTTCTTTCGCCTTTATATTTTAGGAAATTTATAGGTCAGATGACATGTATTGGTCTTATTGGTTGTCTGTGTTTATTGGCTATCAAATAATGAATCCAATTATCTGTTGGACCAAAAGTCATTTATAGATTGGTCTGTCATCTAGTTCAGCAAATAAGTTAAACGACCCTTGTGAAAAGGAGAAGTAAGGAAGACACTTGGTATTATGGAATAGTAGCTAGTTGTTTGTACGTGTTTCAGTAAAACATGGATCATGTTCCTCAATAGTGTCCAGTACAGACAAGAAATTAGTAAATTTCAGCTGGTTCTTTTTCTTCTTCTACTCTCTTTTTACTTTTCCAAGAATTAGATTCTTGAAGAATTTGCAGCTAGCACAGTAGAGTTTCAGATTTCATCCAGTTTTTGAAGTGTTTCTTGTCATGGCCCAACTGTTATGATAGTTTGCAACTTCATATTTGCTACCTGTGAAGAGTGAATTTTAAGTAACTGAGATTGTGGCTGTAATGATAAAGCAACTCATTTTTTTTTAGAAAGGTAACATTTACTTCTATCTATCCACAGGTATACTAATATCGAAGTGTAGTCCCCCTCAAAAGAGTTCTACTTACATCATTCCTAAGATCTTCTAGTTACAGCCAATCAATAACATTAAACACATCTTCAGTATCTCCCATCACTACTTGCTTACACCAAAAATATGTCTTTATCTTCTGAATAGATTGTTCCGTTTTACTTCAAAACATCTTTGATTCCTTTCCTTCCAAACCACCAAATGCAAGCTGGGACAGTCCTCCATCTCTTCTCCTTTTTTCCTACATTTCCATCCCTGTTCCAGCATTGTAGGACTTTTATAATTCTCCCAGACTTTTTCCACTTGATCTTCCTCTTGTGGATGAACACCTGCCACAATTGATCTGTCCATTTGTTGTGTAAAAAAGAGATGGTTGACTGTCTCCACCTGTTCTTCACATAGATAGCATCTACAACATAGATTGGATTTCCTCTTGTTCAAGCTCTCATGTGTCAAGACTGCCTCCTTTGCCAAGAGCAATGTGAAGCAATTCACCTTTTGTAGGGAATTTCTGTTCTCTAGATCATCCTCCAGTGCCATCCTGCTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTAAATTCTCCCCTTCTCTCCCCCTTCCACACTAGTCTATCTTCCTCTCTTGTCAGATTGGTAGCCATATGCATTGTTTCATGAGAACTTGCTATTTTTGTCATTTCCCAATCACTTATGTTCCTTCTCAGAAACAGGTTTCGCCCTAGTCCAGTCCATAATTTTTTTTCTTGAATTTAGTAAGGTTGTATTATATCACAAAACAGCACATGGGTTGTACTGAAACCTTATATACAAAACCCCCAAATTCTTACTGCTCTATGGCTAATTGAGTCTAAAACATCAATTATAGTACAGGGAAAACATTTTTGAGTCCATAATGCTGCCACTGTTGCTTCTTGTGCTTCGCTCAGACTATGCAGTACAGGGAAAACATTTTTGAGTGTCTCCTGTCCACACCAAATGTCATTCCAGAATACTAATTTTTTTCCATTGCCCACCTTACAACTTGTTCTCTCCCTGACCAGCTGCCATATGTTCCTGATGGACCTCCATACACTACAATTATCAGGGTTGATCACCCACCTCTGTCATCCATTTGTCCTCCATTTATGGTGGTCACATAAGTAACTCTTGATAAGTGAGATCATTATACCTTATTAAAACAAGTTGAGATCATTGTTCCTTTTCAAATATAACTCGTGTACTTTTCTGATTTTCTTTTGAACTTATAAACTGATAACTACTGCAATAGGAATATTATCATTTAAATAGGTGGAGGTAAGCATGATGTTTGTTTTAGTTCGAGGCTACTAAGCATGTTAATGAAGGAAGAAACCGAGTGTAATGTACATCCTTACAAGCTATGGTAAGAAAAAACAACCATTGACATGATAAAGTTGCATCACAAGACGCGGAGGAGGGGGGGGGGTTACACAAAATACTGACACCTCTTTGTGGATTAAATCGATCCTGCTTGCATTACTTCTTTGTCCTTGGAAATGTCATAATAACTTTTTATTTCTTCTTTTGCTATCTTTTCATGTGTTTGGTTCTTGACCATGCAGGCATATGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAAGTACTTACTTCCTGCTATACTCTCCCTACATTTCATATTTTAATTTTTCTTCTGGTGTCCATATGTATGGCTTACACTTTCTTGGGGCTCTAAAAGTGGGAGGATATGAAACCCATCCTTTCCAATCTCTCTAGCCCAGCAATTTCTGACCCCCAGACTCACGCTTCTTTTACCACAACAAAACCCAGTTTTTCAACCCATCTACAGTTGGATAAATCTGAAAGTATACTTTTCGCTTCCTTTCCCCCCGGTACCAGAGCAATGGAAGAAAACACACTTAGTAAAATCATGCCGTCCCACTTCGAATTTTTTTGTTTGATTTTGGAGACCTTTTACAGGCGAGACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAGGTATAGTCAACATTTTATGCAAAATCTTTTTGAACACTTAGATAGTATCTCTAAGTCGGTTGCAACCATCATGTTTTTGATGATCTTTGATGGGATAGACTTTTCTTTATGTAACTGATCCCTCCATACAATTAATATAAGGAAAGATATTGAAAATAAAGTTAAAATCCATTATCCAGTCTTCTAAGATGTCCTTCAAATCACCATGTAAAGTCGAACTCCATAGAAAAATCTGAACTGTAGAGGAAATAAACAAACATAATACCCAGTAAAATCCCACAAGTGGGATTTGGGGAGGGTGAATGTACGCAAACCTTACCCTCTACCTTTATGGGGCAGAGAAGCTGTTTCCAATAAGCCCTCGGCTCAAAAGAGATGTCTTCAAAGCAGGATTGCAAGAAATATTGTATTTTTCACCAGAAGTCTAATAAGAGAGAAGGTTTTAAGTATCAGATCAGGTAAAGAAACTGGTGTGGCCTCTTCATAATTTTCAATTTATAGTGCATCCACTTTGACGGCCACATACTTCCAAATTTCAATATGTTGAAATGGTAAAAGGAAGTATCTGAAGTGTACACAAAGCAGAGTGACTCTATTACTTCAGAAGAATCAGAATTGGTGGGGCAAAAGTTACAGTCAGCTTTTTGTAACAGCTTAAGATTTTGGTTCACCAAGGCTAGCAATAGCATGCACTATAGAATCCCATTATATTTACTATCAATTAGCCATTTAAAACTTGGCTAATCAAGTATAGTTTCAGGACAGAGCCTTGCTGTTATGGAAATTTCCTCAGTATCAATTAGGTTCATGATGAGGGGGGGGGTTATCCCCCCCCCTAAAGGTCATAGTGCGACTAGTAGAAAAGAGAAGAAAGACTAGAGCACGAGGTACCTGATCATAGGCTTTCTCTAGGTCATTGAATATCATCTGGGATCCTTCTTTTATCCTTGTAAATTTTCCGTCTAGAAAAATATATAATCCATATTGTAGATTACCAAACTATTTCCCTGTCAATTTTGTTATGTGTCCTATATCTGTGCTTTATAATTTTTCTGGAAGTTCATTGTATGACTCATAAGTTCAAGACCATGATACTTCTTAAGACAAGTTTAAAATCTTATTTGTTGTTATACATATGCACCCTGGTACACTTTCTATACTCCCTTGGTATCTTTCTATTTCTTAATATATACTAATTTGCTTGATGTAAGTTATAATGTTCGGACCTCTTCAAGACTGCAAGACACTTCTGAAATTCTATAGGGGAACCAATTTTGATTGCGTGCCTCTTCATATTTTTCATGACATCATTTACTTCCGTGAACCTATTTCTATGAGTGTAGCTTAGATTTTGTCTTACATGATCTAAGAGAATCTAAAAGTCACCCCATGATTTAAATTGGGCAATTGACTAAGATAGCGTATCCACCTTCTGATCCAAGTATCTTAGTGCACGTGGTACTAATATAATCAAAGTAAATCATGATATGGTCATATGACGAGGCATTGTATATTCAATTATCCAAAAATGATTGGGAGATAGATACTCATAAGGCAGATGTGAGTCTGAAGTTTTATTTGCTGATGAAAAAGCTGAACTTGATTAGTTTCTTCGTTGAAGGCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACT</genome_strand>
        <mrna_strand>GGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAG..............................................................................................................................................................................................CGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATG.................................................................................................GGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAG.....................................................................................................................................................GCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGGTTAAGAAGAAAAACAGGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAA..................................................................................................................................................................................................................................................................................................................................................GCGAAACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57640" stop="58536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58262" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTCGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57640" stop="58536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58245" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTCGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57640" stop="58390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58090" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTCGTATAAAGCTAGA-AAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745989" ref_strand="+" ref_description="SGN-E745989 [GI|47105413]">
      <seq>gagcccaaaaaaaaaatccctgttttctcatggctcgtttcctctcaaatcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaaacgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcaggtggtggaagtggaggtgaagcttgaggacaacccggataatgattctaaatctgaggacgaaggataaatgacctgtctgtgtagtgagcttctgtagcttagtaaccttgtaaattctttgaaaacctggaaaacataagaagctgcttacctcatgaaggaggagcaaacaaagttacacggatcagagtttggggttttagttctttaatccgcgctcttgttcaatgtagtggttcaagttacacagatcggagtttggggttttagttcttcaatccgcgctcttgttcaatgtagtggttcaatgctcaacctagctagaaaaaatctatgtatttatgatggtgtttgaactctatgatctggaaaataatcagcctgcttagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58291" stop="62995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58590" g_stop="59133" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="667" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="62397" i_length="835">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62398" g_stop="62689" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="959" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="962" polyA_stop="977"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E745989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58590" e_stop="59133"/>
          <exon e_start="61439" e_stop="61562"/>
          <exon e_start="62398" e_stop="62689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAAAAAAAAAATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTAGTAAGTTGTCTATCAACACTTGCATTTTGTGATCTGCATCTACTTTTCAGTTCCATCTAGAGGGATCTACTTTGATCTATCAATTATAGTTTTGAGTCATTTTTTATCCTAGCGGCTTCTGTAACATCTCATGAAATTTCCTTTTCTAAGCAAGGGCAAGCCGTTTCTTGGTTGACCTAATCTTCCAGGCAATGCGTCTTCCCCTTTTTTTCATGTGTGAGTGTTGGTGGGGGGGGGGACAAAAAGTCTGTTGGATGGGGACTCGAACTGATTAGAGAACTACAGCTGACAAACTTTATATTATACTACTTAAACAAGATTTGTGGTTTTGATAATACAATTTGGTTTATGATAAGAAATAATAAGATGTGCATTCCTCTAAGGGGATGTTTGGTTGGGTCTACAAGGATAATGTTGATCTGGTCTATTAGTAATGATTGTATTAGTTATGCTGAGATTAATGTAGTGTTTGGTTTGTTGTATTAAAATAACGTATAATGCATAATTTTTTTTAAAAAAAATACTTGTTCAGGAATATGATGGAAGGAATGTGGAAAAGATTTTGAAGGGCAATTGTGCCTTTAACCATGCATGCATTAGAACCCATTGCATCACTATTATCATATTTTTTTATGCATTAGTATACACACCTTAATACGAAATAGAGTGCATTAGCTATACCAAACAAGCCACTACTAATTCACAAAGGAGTTGTACACACTTCAATACCAAATAGAGTGCACCAGTTATACCAAGGTACTAGTTGCTAATGCATTAATTTTTTCTAATACACTAGCAAATGATCCCTAATTGTATATATTTGTTGAATTTGCAGGCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGGGTTTTAGTTCTTCAATCCGCGCTCTTGTTCAATGTAGTGGTTCAATGCTCAACCTAGCTAGAAAAAATCTATGTATTTATGATGGTGTTTGAACTCTATGATCTGGAAAATAATCAGCCTGCTTA</genome_strand>
        <mrna_strand>GAGCCCAA-AAAAAAAATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGGGTTTTAGTTCTTCAATCCGCGCTCTTGTTCAATGTAGTGGTTCAATGCTCAACCTAGCTAGAAAAAATCTATGTATTTATGATGGTGTTTGAACTCTATGATCTGGAAAATAATCAGCCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301509" ref_strand="+" ref_description="SGN-E301509 [cLEW-23-O19]">
      <seq>aaaaaatccctgttttctcatggctcgtttcctctcaaatcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctatattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtgatcgtggtgattttgatcctcataggatactacaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaaacgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcacgtggtggaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58301" stop="61777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58601" g_stop="59133" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61477" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="572" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E301509" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58601" e_stop="59133"/>
          <exon e_start="61439" e_stop="61477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGG</genome_strand>
        <mrna_strand>AAAAAATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTATATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTGATCGTGGTGATTTTGATCCTCATAGGATACTACAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCACGTGGTGGAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310388" ref_strand="+" ref_description="SGN-E310388 [cTOA-10-G4]">
      <seq>aatccctgttttctcatggctcgttttctctcaaatcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctgcacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactacaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaaacgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcangtggtggaagtggaggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58305" stop="61784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58605" g_stop="59133" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61484" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="575" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E310388" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58605" e_stop="59133"/>
          <exon e_start="61439" e_stop="61484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAA</genome_strand>
        <mrna_strand>AATCCCTGTTTTCTCATGGCTCGTTTTCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTGCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTACAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCANGTGGTGGAAGTGGAGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728042" ref_strand="+" ref_description="SGN-E728042 [LA16CB04]">
      <seq>catcggttcgttttctctcaaatcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaatcgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcaggtggtggaagtggaggtgaagcttgaggacaacccggataatgattctaaatctgaggacgaaggataaatgacctgtctgtgtagtgagcttctgtagcttagtaaccttgtaaattcttttaaaacctggaaaacataagaagctacttacctcatgaaggaagagcaaacaaagttacacggatcagagtttggggttttagttctttaatccgcgctcttgttcaatgtagtggttcgagttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58319" stop="62849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58619" g_stop="59133" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="640" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="62397" i_length="835">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62398" g_stop="62549" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="792" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E728042" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58619" e_stop="59133"/>
          <exon e_start="61439" e_stop="61562"/>
          <exon e_start="62398" e_stop="62549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAT-GGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTAGTAAGTTGTCTATCAACACTTGCATTTTGTGATCTGCATCTACTTTTCAGTTCCATCTAGAGGGATCTACTTTGATCTATCAATTATAGTTTTGAGTCATTTTTTATCCTAGCGGCTTCTGTAACATCTCATGAAATTTCCTTTTCTAAGCAAGGGCAAGCCGTTTCTTGGTTGACCTAATCTTCCAGGCAATGCGTCTTCCCCTTTTTTTCATGTGTGAGTGTTGGTGGGGGGGGGGACAAAAAGTCTGTTGGATGGGGACTCGAACTGATTAGAGAACTACAGCTGACAAACTTTATATTATACTACTTAAACAAGATTTGTGGTTTTGATAATACAATTTGGTTTATGATAAGAAATAATAAGATGTGCATTCCTCTAAGGGGATGTTTGGTTGGGTCTACAAGGATAATGTTGATCTGGTCTATTAGTAATGATTGTATTAGTTATGCTGAGATTAATGTAGTGTTTGGTTTGTTGTATTAAAATAACGTATAATGCATAATTTTTTTTAAAAAAAATACTTGTTCAGGAATATGATGGAAGGAATGTGGAAAAGATTTTGAAGGGCAATTGTGCCTTTAACCATGCATGCATTAGAACCCATTGCATCACTATTATCATATTTTTTTATGCATTAGTATACACACCTTAATACGAAATAGAGTGCATTAGCTATACCAAACAAGCCACTACTAATTCACAAAGGAGTTGTACACACTTCAATACCAAATAGAGTGCACCAGTTATACCAAGGTACTAGTTGCTAATGCATTAATTTTTTCTAATACACTAGCAAATGATCCCTAATTGTATATATTTGTTGAATTTGCAGGCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACAC</genome_strand>
        <mrna_strand>CATCGGTTCGTTTTCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAATCGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTAACCTTGTAAATTCTTTTAAAACCTGGAAAACATAAGAAGCTACTTACCTCATGAAGGAAGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCGAGTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313217" ref_strand="+" ref_description="SGN-E313217 [cTOA-18-E3]">
      <seq>tcgtttcctctcaaatcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaaacgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58325" stop="59434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58625" g_stop="59133" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E313217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58625" e_stop="59133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG</genome_strand>
        <mrna_strand>TCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284632" ref_strand="+" ref_description="SGN-E284632 [cLES-3-F8]">
      <seq>tcccttaacccgaacccgaattctgacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58340" stop="59294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58640" g_stop="58994" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E284632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58640" e_stop="58994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAG</genome_strand>
        <mrna_strand>TCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554346" ref_strand="+" ref_description="SGN-E554346 [cTSC-4-A12]">
      <seq>ttaacccgaacccgaattcggacccgacccgtattctccccacctcttctcctcactctccggcaccgttcaaactccaatcgctccggcggtggatccggtgatggtggaggtgaaccacctcaccctcagttaatcgagatcgacctagattcgtcatctagtggatcggacggtggggtaaagaagttggaggaggtaatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaaacgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcaggtggtggaagtggaggtgaagcttgaggacaacccggataatgattctaaatctgaggacgaaggataaatgacctgtctgtgtagtgagcttctgtagcttagtaaccttgtaaattctttgaaaacctggaaaacataagaagctgcttacctcatgaaggaggagcaaacaaagttacacggatcagagtttggggttttagttctttaatccgcgctctttgttcatgtagtggttcaagttacacagaatggagtttgggggtttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58344" stop="62873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58644" g_stop="59133" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="614" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="62397" i_length="835">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62398" g_stop="62573" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="790" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E554346" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58644" e_stop="59133"/>
          <exon e_start="61439" e_stop="61562"/>
          <exon e_start="62398" e_stop="62573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTAGTAAGTTGTCTATCAACACTTGCATTTTGTGATCTGCATCTACTTTTCAGTTCCATCTAGAGGGATCTACTTTGATCTATCAATTATAGTTTTGAGTCATTTTTTATCCTAGCGGCTTCTGTAACATCTCATGAAATTTCCTTTTCTAAGCAAGGGCAAGCCGTTTCTTGGTTGACCTAATCTTCCAGGCAATGCGTCTTCCCCTTTTTTTCATGTGTGAGTGTTGGTGGGGGGGGGGACAAAAAGTCTGTTGGATGGGGACTCGAACTGATTAGAGAACTACAGCTGACAAACTTTATATTATACTACTTAAACAAGATTTGTGGTTTTGATAATACAATTTGGTTTATGATAAGAAATAATAAGATGTGCATTCCTCTAAGGGGATGTTTGGTTGGGTCTACAAGGATAATGTTGATCTGGTCTATTAGTAATGATTGTATTAGTTATGCTGAGATTAATGTAGTGTTTGGTTTGTTGTATTAAAATAACGTATAATGCATAATTTTTTTTAAAAAAAATACTTGTTCAGGAATATGATGGAAGGAATGTGGAAAAGATTTTGAAGGGCAATTGTGCCTTTAACCATGCATGCATTAGAACCCATTGCATCACTATTATCATATTTTTTTATGCATTAGTATACACACCTTAATACGAAATAGAGTGCATTAGCTATACCAAACAAGCCACTACTAATTCACAAAGGAGTTGTACACACTTCAATACCAAATAGAGTGCACCAGTTATACCAAGGTACTAGTTGCTAATGCATTAATTTTTTCTAATACACTAGCAAATGATCCCTAATTGTATATATTTGTTGAATTTGCAGGCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGGGTTTTAGTT</genome_strand>
        <mrna_strand>TTAACCCGAACCCGAATTCGGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTTGTTCATGTAGTGGTTCAAGTTACACAGAATGGAGTTTGGGGGTTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578253" ref_strand="-" ref_description="SGN-E578253 [LE12BD05]">
      <seq>taatccattcggttatcgtgaggcgttctgctccagattggttaccttttttgcctggatcatcttactgggttccacctccacaaccgtacgtgaaagttgggggaatacatagtaatcgtggtgattttgatcctcataggatactagaggttgttgggaaaatggctgctgtgaagagtcattttggttctgcttcttcgttatcggcttcctctttgttatcagaggatgaatcgaggtcggtttctcgtgttcgtggatggccttcgtcctcgttttttactggaggacctgctttcccaaccccagtgcaggtggtggaagtggaggtgaagcttgaggacaacccggataatgattctaaatctgaggacgaaggataaatgacctgtctgtgtagtgagcttctgtagcttagtaaccttgtaaattcttttaaaacctggaaaacataagaagctacttacctcatgaaggaagagcaaacaaagttacacggatcagagtttggggttttagttctttaatccgcgctcttgttcaatgtagtggttcaagttacacagatcggagtttggagttttagttcttcaatccgcgctcttgttcaatgtagtggttcaatgctcaacctagctagaaaaaatctatgtatttatgatggtgtttgaactctatgatctggaaaataatcagcctgcttagtttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58543" stop="62995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58843" g_stop="59133" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61439" g_stop="61562" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="415" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="62397" i_length="835">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62398" g_stop="62696" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="714" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="727"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E578253" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58843" e_stop="59133"/>
          <exon e_start="61439" e_stop="61562"/>
          <exon e_start="62398" e_stop="62696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAGGTATACAATTCTTATAAATTAGTTTACACTTTTAATTCTATCTTGGTTTTGTAAATTGACAAGTGATTTGGGTAGGAGGGTCTGAGGGAGTATTGCTATTCTCTTTTGGGTGGCTTTTGAGAAGTAAGAACAGTTACTTTACTTGTTTTAAGCTCGTAAAGATACGAGTTTTAGGTAATATATATGCCTAATAAATGGTATTAAGACTTATTTTGGTTACTGGTTGCCTAAAGCTGATGTCTTTCGCGTATGCAAGTGTAGATGATCCTTAGCTTAGAATTTAGATCAAGGAGATTCCTAATAGGCTAATTATGATTCCTAGAAAGGATGTCATGGATTCATATAACTGGTGTTAACTCGTTTAGGATTGAGGGCTGGTGAGTAGAACCGATTAAGATGCTTTTACCAACATAAACTTATTGTAATCAATTGGAGGAACAACTGAGATCATCTCTAGGGAGGCAAGCAAGTCTACTTGGCTCTTTTCACTTATCAACATCTGAATTTTCTACTTATGCTTATCATCAGAAACACTGTCAACAATACCCAAACGCCCTAAAAATGGTTTGAAATTTGTTTGCTTTGGTAGAATGTTTTGCGTGGGAACTGTTTCTTTCGAGATTATTGTAAAAGGGTCAAGCTGATAGATTTATTTTTTTTGGAGTGCAAGAAAAATGTGTGGGGAATTTGTATCTACATAACCAAATAGATATTCCTGAATTTGGATCCACCGGCCTATTGGGGCATGTATAAACTTTTGCTGACTGAGATATGTGTGTGCAAACTGCAATCATCCAGTGCCAAATGAGATATAGAAATCGTTAGTCTTAGCCTTTTATTTCTAAGAAATTGCATGTGGTTCTAAACCAACTGCAACTTTGTGCATGGTCTAGTGCCAAATGAGATATATCATCTTAATGCAGCATCCCAAACTCAGAAAAGATATCAAACACTACAAGAATAAGCTTTCTCCAGTGTTGTGTGAAGTATTCTCTCATAGTGAAGGGAGAGGCGAAGCCTAGTAACACAGCATCATGGTTTAGCCTAGCCCTGACTCTCCTTCGAAAGTGAGATACCGGCTTTCATAAGAGGGAAAGATCACTCCGTCATGCAGATTAAACACTGCAAGGACAAGCTTTCTCCAGTGTTGTGTGTAGTATTCTCTCTGTCACAAAGTTTAAGAAAGAACTGAAGAGGTATAAAACTTGTGGTCGAAAACAAAGCTTAGACATTTATGTGGCTAAATATCATTTCATTAGGGGTAAAAGAGAATTTAGAGATAAGTTGTCTCCAATTAGAAAAAGGTTACATTTTTTTTAGACAAACTAAAAAGGAAAGTGTACCACATACATTGGGGCAAAAGGAATAGTAAACACGGAAGTTTACTTTCTTTATTCAGTTGGGAGCTACATTGTACTATTTAATATATTTGATGGACTTCTGTTCTTCTAGTAAGTCGCATTGCAAGTTCATAAAAAAGAAGAACCTACTTCAAGTAATATGCCCTTAGGTTTGATCATACATAACATAGATATCACACTTGGAGAAGGGTGAACAATTAGCTAGAGCAGCAGATGGGATAGGAGCAGAGTTGTCAAAACTCAAAAGAGCTAAATGCATTCTCCACATATGGAAGCACCATTTACATTTGCCTATGTAAGAAGAACGGGTTATTTTGTAACAGATTTCAACCCTCCTTCGGAAGTTGAGCAGAAAAGCACCCATGTTGTTTTATGTAAGCGGAAGGACGACGAGCAACTGTTGGCACCCCAAACTGGGAACTACAACTGGAAATCTGACTTTAGGTAGTCATTATGATCAGATACTCAACTCTCTTTAAATGGACCGCCTATCCCTTTGTATAGCTTACACGGTGATTGGAACAAGGACACATTTGGTTTAGAATTCCCATGTGGAAATTTTCTGTTCATTAGCAGAATAGCTGAAATCTAATTGCATTAAAACCAGTGGAATCATAAATGGAAAAAACAAATCTTAATTTCCTTCACCTGGAATACTTGCTGCATGTTCTTTGGGATGTCTCTTATTTTGTCTTGAGAATGTGGTCTTTTTGCTATATATGTTCAAATAGGTTGATTCCTCATGGAGATGGGAAAGTAGTGGAGTTCAAAGACACCCTTAATGAATGAATTCTCTCAATATTTAGTTATATTTGTCTCTGGCTACATTTTAGTGGATCTGAGTTGCTGGAAATACAGCAGCGAACCTATCCAGTAGCTCTATGGTATAGTTGTAATGGCAACAATACATTGATGATATTCTTAGCATTTGTTGCTACTTGCAGGACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTAGTAAGTTGTCTATCAACACTTGCATTTTGTGATCTGCATCTACTTTTCAGTTCCATCTAGAGGGATCTACTTTGATCTATCAATTATAGTTTTGAGTCATTTTTTATCCTAGCGGCTTCTGTAACATCTCATGAAATTTCCTTTTCTAAGCAAGGGCAAGCCGTTTCTTGGTTGACCTAATCTTCCAGGCAATGCGTCTTCCCCTTTTTTTCATGTGTGAGTGTTGGTGGGGGGGGGGACAAAAAGTCTGTTGGATGGGGACTCGAACTGATTAGAGAACTACAGCTGACAAACTTTATATTATACTACTTAAACAAGATTTGTGGTTTTGATAATACAATTTGGTTTATGATAAGAAATAATAAGATGTGCATTCCTCTAAGGGGATGTTTGGTTGGGTCTACAAGGATAATGTTGATCTGGTCTATTAGTAATGATTGTATTAGTTATGCTGAGATTAATGTAGTGTTTGGTTTGTTGTATTAAAATAACGTATAATGCATAATTTTTTTTAAAAAAAATACTTGTTCAGGAATATGATGGAAGGAATGTGGAAAAGATTTTGAAGGGCAATTGTGCCTTTAACCATGCATGCATTAGAACCCATTGCATCACTATTATCATATTTTTTTATGCATTAGTATACACACCTTAATACGAAATAGAGTGCATTAGCTATACCAAACAAGCCACTACTAATTCACAAAGGAGTTGTACACACTTCAATACCAAATAGAGTGCACCAGTTATACCAAGGTACTAGTTGCTAATGCATTAATTTTTTCTAATACACTAGCAAATGATCCCTAATTGTATATATTTGTTGAATTTGCAGGCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGGGTTTTAGTTCTTCAATCCGCGCTCTTGTTCAATGTAGTGGTTCAATGCTCAACCTAGCTAGAAAAAATCTATGTATTTATGATGGTGTTTGAACTCTATGATCTGGAAAATAATCAGCCTGCTTAGTTTAAC</genome_strand>
        <mrna_strand>TAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAATCGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGTAACCTTGTAAATTCTTTTAAAACCTGGAAAACATAAGAAGCTACTTACCTCATGAAGGAAGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGAGTTTTAGTTCTTCAATCCGCGCTCTTGTTCAATGTAGTGGTTCAATGCTCAACCTAGCTAGAAAAAATCTATGTATTTATGATGGTGTTTGAACTCTATGATCTGGAAAATAATCAGCCTGCTTAGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745369" ref_strand="+" ref_description="SGN-E745369 [GI|47105709]">
      <seq>ggcctaagcaaagctccgatcttcaaaagcaagagaaaatagagaaagcttcaatggcggaaaaacatgaaaatctcagctcaacatcggaacaacaatcgtcttcttctgcctctgcttatcaaaaatctccagaagaaacccttaagaaacaaccccagctcccatcatttcagggttcaccgatgttaaattatcagatgctccaagccatgtatccaacactgcttcctggagctttcggtatgcagccaaatcaggaggagttgaaccatggaccaggcctttatgctgtacctgttgccccttttatgggacaatatgcagggtttccaccaaacactctaattccatttacttacgctgtacctactggacctagtgttccagaaaatggagctgtaggtgaggagcaaggtcagatgggacagcagcagcctcagcagcaacagcttggaccccaacgacaaatagttgtcagaagatttcaaattgcatttcagctagatctcttgcttattttgaagctggctgcagtgatttttttgttcaatcaagatggatcaagacagagacttgttctgcttgtgtttttagcttcacttgtgtacctatatcaaactggagctcttgcacccttggtacggtggctttcacaaggaatgcagagggctgctgcacctccccaaccacctaggccagctgtaagggcagataatgtaccaggtgctggaaggcaaggaaatgacaatgttgcagctggagagggacaacctggaggtgaaaatgagaatctactaggtaacgatgtaaatagggtaggcgagaatgagcaggcagtggaacccggagctgctgacgctggcaaccgttggtggggtatcgcaaaggagatccaaatgattgtctttggcttcataacttcccttcttccaggttttcacaacattgactagattgtacagatcaagtagcagttgcagatagcaaagagggataaagagaatttttcttttgctaccatgttgttttgagaggacatcaaatgtataacttaaagatagttttctcttctatttggtcataacatagatcatcatagttttctcttctatttggtcataacatagatctaaatgatgttgttgttcttaatatgattggcgaggttgtgtttaaatagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64553" stop="73254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64853" g_stop="65013" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67982" g_stop="68193" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="373" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69811" g_stop="70050" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="613" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70051" i_stop="71995" i_length="1945">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71996" g_stop="72147" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="765" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72148" i_stop="72527" i_length="380">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72528" g_stop="72963" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="1201" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E745369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64853" e_stop="65013"/>
          <exon e_start="67982" e_stop="68193"/>
          <exon e_start="69811" e_stop="70050"/>
          <exon e_start="71996" e_stop="72147"/>
          <exon e_start="72528" e_stop="72963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTAAGCAAAGCTCCGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAGGTGCCCATTTTCTCAATTAAGTTTTTTTTTTGGTTGATTGAATTTGGTGGAAATTATTTGTTGGGTATGAACTTGAATTGAATAAATTTGGTGTTTTTTTAGTGGTGTAACATTTCTGAATTAGATGGAGTTCCTTATTTTGTCTTCTCGTTTTGGGAATTGAATTAACTGTTTTGGTTACGGTGGAAAATTAGGGTATGTTATAATTTGATGTAAATGTTTTTGGCTTAAAGAGTCTTTGTTGTATATTCTATGTATCTACGATTCAGGAATTACATAAAAATACTGGTGTTGATTATAAAAAAAAAATTGATCTTTGGTCTATTTAAAGCTGTTGATAAGGGCAAAGTAAGTAGGAAAGATGCATGCGATTTGAAGTTCCGCGTGTGTGTAATAGGGATACAGTATAACCTCATCCCGGAACCCTCTTCCAAGTGAAAACAGCTATGCCTTCCCAATTTTCTCCTAGCTTCTAGGTTGAAAGTGGAGTGCTCGTTCGCCACTGGAACAATCTCTCTTATCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCTAAAATCAATGTCTGTTGTAAAAACACCTTACACACGTGTCCTTGGGTGTCCGTTGTTCATATACAGTAATACCTCATCTCAGAATCCTCTTCCAAGAGTCAACAGCTATGCCTTCCCAATTGTCTCCCAGATTCTAGGTTGAAAGCGGAGTGCTGGTGCGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCAAAAATTAATGTCCATTATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAATCCTCTTACAAGAGTCAACAGCTATGCCTTCCCAATTTTCTAGGTTGAAAGCGGAGTGCTGGTGTGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTTTGGAGTTCAGTGTCTTTTTAAGTGTCAAAAATTAATGTCCATAATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAACCGTCTTCCAAGAGTCAACGGCTGTGCCTTCCCAATTTGCTCCCAGATGCCAGGTTGAAAGCGGAGTGCTCGTGCGCCACTGGAGCTTGTCATTTTCCGGGCTTTTATCTTTGGAGTTCAATGTCTTTTACGTGTTAAAAACTAATGCCTGTTGTAAACAAAACCTACACACGTGTCCGTTGTACATACACATTAGCATGTTTCTGTGAGTGGAAATGAAAGATTAATGTCCGTTGTAAACAAACCCTACACACGTCTGTTGTACATATACCTTAGCATGTTTCTGCGAGTGGAAGTGAAAAATTTAATGTCTGTTGTAAAAAACCCTAGACACGTGTCCGTTGTACATATACCTTAGCATGTTTCTGTGAGTGGAAATGGAAAATTAATGTCCGTTATAAACAAACACTACACACGTATCCATTGTACGTATACCTTAGCATGTTCCCGTGAGTGGAAGTGAAAAGTGAATGGCCGTTGTAAACAAACCCTTCAGACGTGTCCGTTGTACATATACCTTAGCACGTTTCTGTGAGTGGAAGTGAGCTATAATGAGGAGAAGTACAATGTCTTGGTAGCTGAATAACCCTAATGAAGTTATAGGTTCTTGGTTTTCTTGCTTTTGATGTCATTATCAAGCATCCAACATTCTCTATTTGTACAGCATTAATTACAGCTCGAAAATTGGTAAGAGTGAATGTCATGCTTATGCATCGGAGGATGTTTTATGTCAATCTACGTGGACTGCTAAACATGTGCTGAATCACCAGACGTGTTAAAAAGGAAATCTATCTTAAAAAATGTTTTTTTTGGTGGGGGTGGGGGAAGAGGTAAAAACTTACCCGTACTTGGTAGTTATCCTAAACCAGGAAAATAAGATGTCCTTTTAACTTTTCAGAGCCACGAAATGCAATCGATTAGCTGCATAATCCCGTGTCTTTTGGAGAGCTATGTTGCAGATTGAAATGTAGAAATTCTAAATTTTCTTTCTAATATTGAGTGCTTCTTGCTTTTCATAATGTATGGATGCATCGATTACTGTTTTTGCTTCATATGCGTGGATGCGATACCATTTGGAATATTCTTTTAATTTGTTGCTCTCTTTATTATAGCCATGATGTAGTGGGTAAATCAGAGATTGGTTATCCGTTACATTTCGATACTGATTGAGATTTAAAACCTATTTTGCAAACTGATGTGAAGGGAATTTCCGAACAGCCTGACACTGCTTGGCATTTAAGACCCAAGAAATAGCTCATTTAGCACTATACCTCCCACTTCACTCTCATATCTTTTTTTTTTTGACTTCTACATTTAAATATGTTTAATCATACAAAACAAGATACAACTGGATATGTTTATCCAAACTGCTTGTAGCATTCCTCGTTTACTTGGTTCCTCAATTTATCCAATTATATGAATTTCTCTTTATCCAACTTGTGGACCATAACAATTCCATTTTTAGAGTATGATTTTTGATCAATTCCTACCTTACCATTCAATCTGGTTTTAGGGGTGCGTGCATCAAGTGACGATTAATGGAGTGGTAATCTGGAAGAGTTAATTCGAAAGATGCTTCTCTCTTATGAACTTGATTGCACCACTCACGACAATTGCTGAATTTGGTAGGATTATAAGTCTTGGTCTATGCCTAACAATACATTCATGCGAGTTGTCTTCATTATGGCCATGTCGAAAGGATTGACTGGCCACCTTTTGGCAGGCAAATGCCTTTGCAAGTTTGAGAGCCTGGATATTTTGCAGCCACTAACTTTTCCTTTTCAGTAGGATATTGCTTGGTTTTTTATAAACTTTTTTTGTGAAAGAAAATGCTTACTCGCATTTGAGAAGTTATTCGCTAATTCTTTTATCTGTTTTTACAGCTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTACGTAAGTGTCCCTGAGATTTTAGATCTAGTTTTTGATGTATAAGTTGTCATCATTATCTTGCGTAGCCTCTGTAATTGGCATGCTGGCTTCTCCTTATTTTCTATTGTTCCTTTAAATTAATGCATCATATTCAGTTCGATAGCTGTATCTGCTTAGTACTCAGCTAGTTGAATCCATATCTGATGTAGCAAGAATTGTAGATTTGTGCATGTATTTTCAATGCTTTTATAATCAAAGATGAAGTTCTCTATTCAGGAGTACAACATGTCAGGTGTTTAAGAAATTCTCTGCTGCATCAGTAGAAGTGTGTTTTAACCAATTTTGGCTCCTTTTTTAAAAAAAGCTCCCAAGTCCATAGCACCAGGGCTGGAAGGATTCTTCTGGCTAGACAATGGAAACATGGCAATTGAAGTTGCTTCAGTCTAGAATATCCAACCTCCTTTAAGCATCCAAGAGTAGGAAAATAAAAATAAATAGAATGATAATGACAAAAAGAATAAGACTTACCTGTCACAGACCATTTAAGTTGGAATGAGGATGATTTTAGTATTTCTTGGTACACCTACAAATCTGCTGTTCAGAGCTTCTTGTGTACATGCAATACACTGACTAAATTCTGGCACCATACTTATGCTAGAAATATTTGACACCCCTTTAACTTCTGAATTTATATTTTGGAATCGAAGTCTAAACTAGCAACAAGACTACAATGCCACAATTCCAACCAAGTTTGGGTTGTCTACATGAATCCTCATTGACCATGTCGCTCCATTTAAACCCTCTCAGGCAGTTCTCCTAAACTCTGCAAAAGTTATATTGGATAGTTGTCAGTCTTTAATAGGCAAGTAACTGACCTTAGTATTCAGTTAAGTTTTTGAATCATTTGTGGCAGGGAGGGAGAAAGATTGTGATGGTGATTTATTTAGATTCTCTTTAGCAAAATACGGTAAAAGCTTTTTATAGATGCACAGTAAACAATTCTCATTTTTGTTTTCTGTAACATTTCATGTTGGCCAAGTCTCAGATTCTGGTCTGTGGTATTATATTGTCATTAAGGTTGAACTCCTGAATAGTCGCCCATTGATAAGGAGCCTAATGTGGTGTCGTACTGTGCTGGACATGATTAATGTGACTAGCACCTTTTCCTGTACATACTTAGCAGCTTTTTTGCTGCTGATTATAAAATAGCACTTTTTTACTTTAACCTAATCAACAAATTAAAAGATGTTACTCTGGTCATTTCTCTTTCTGTTCTCCACTTGGTGTTCATGCCTGTTAGTTGCTTGAAGATATATAGTTCTTTGTTACTATTGTTGTACTTATCATCTGCTTAAATGACATCAACCTAAAATACTAGGGATGAAGCCATACTTACTTCTCATGCACCTGGAAACTGGTAGGTATATATATCCACTCAATTGCATGTCATGTTATTGATATCTTTATTCCCTTCATTAGCCTTCATACTCTGACAAAACACGAAGCCTTAAGGAAGTGTTGGAATTATGCTTTCTAGTTTCTTAGAAGGGCTACTTCCCTAAAAAAACCTATTTGAGCAGAGCCTTATTTGTCTCTCCTTGCTAAAAATTAAAAAGCAAAACATGCTGCTCTTGACAGTGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCTGTAAGTGTTTGTCAATTATGATCACTTCCCTTTTATTTATTTATTTATTTATTTATTTTATTTGTTGTGATGTGCGTCACTCAAGCCGAAGTTCTTTCAGAAACTGTCTCTCTACTTCCACAAGGTAGCGATAAGTCTGTGTACGCTCTACCCTTCCCGGACCCCACTTATGGGACTACACTGGGTTATTGCTTATTCATTTTATTAAATACTAACAGTTTGGTCTTAAAAGCTGTTGTGACAATTAAGAATTCTTTTGGACGCGTCAATTTCTGCAAGATAACCAATATGAATGAGAATGTGGATATACTAAAAGATAAACTAAAGTTCCCTTTTTCTTTGGAAAAGAAAGCAGCTAAGTTGTCCCTACATTTGTATTGTTCTCCTAAATAGCATTCAGATCTTCAGTTGCTTTTTATAGTTTATAATATCCATTTCCTTGATTTCCTTTCTTGGGCATAGTTCTTTTGGTGCTTTTGGTCTCCTCTTCCATTCTCTCTTTGCTCCATTGTGGAACACTAAAGTGAATTGTTCATTGTCTTGAAAGTGAATCCTCTAGCCTTTCTCCTCCCGACCATTTATGCTTGTTTACGCGGCCCCATTAGGTATGTTTGCGTACCACAGTAACCAACTTGAACAAGGGTGTGTTCGGTTTGAAGGAAAATGTTCTCTAGGAAAATAAGTGGGGTTCCTACTAATATTTCTTGTGTTAAGTAAGTAAGCAAAAAATATTATCCTAAATGCCTTTGTATATAACTAAGACAAATACTATGGGAGGTGGGGTGAGGAGGTATGGGTGTGGGATGGTGGGAATGAGGGCTATGGGGTGGGAGTGAAGATGACGTGCATTTGGAGTGTTGGGAGGAAACAATCAATGTGGAATGTCAGTAGTAGAGCTTGTTTTTCCTTCTTCCATTAGGGAGCTCACTTTTCTCATTTTTATGGAGCTGCTTTTCCTGGAGAAAATGTATCCCCAAATATTTGACAGCCGAACATGGGAAAATTGGAAAATATTTTTCGAGTGTAGTGCTAAAATGCCTCCATATATTTCGTTTCTTGTTTTTTTTTAGAAGGTAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGAAATACTTGCATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAGGTCATAAGAACTCTAATATACTAGGAATATCCTCTGCATCTTGAAGATATTCATGTTTACACCAAAAAAAGAAAAGAACCAGGAGAGCAGCTCTTGTTTTTAAAACATCTTTGGTTCCTCTCCATCCATATAGACCACCAAATGCAGGCCGGGACAATCTTCCATCTCTCCCTGTGTCCTGACTGATTCCCATCTCTGTTCCAGCAAGCTAAAGCTTCTTTGATGTTCCTTGGCATAGTCAACTGATGCCCCTTAAATTGATGAAAATGTGCCGCAACTTCGCAGTCTCTCTACAATGTAGGAAGAGATTATTTATTATCTCGACCTCACATTCAAAAGTCAAAACCAACACCTGGAACAGATTTGCTTACCTCTTTTGATGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGCCAACAGCCAAGTGAAACAAGCTATCTTGAATGGTATCTTCACTTTCCAGTCGTTAGTTAGTTTTTTCTAATGATAAAATCATATAATTTGCATTGTGGTTGAATTGCCTATGAAAGAGGGAGAACTTGGAGCATGTGACATATATTAGGAATCTGTAACTTTTGACTTTTGGCTTATTTTGTTCTTTGGCTTAAAAGCACTTCTTATCTTACCCAAACACTACAAAAGTGCTTAAAACTATTTGGCGTAAAAGCACCTAAAAATAAGCCAATCCAAACAGGATCTTACTATTGTATTCATTGAAATACGTGTTTTTTATTTGCTTCGTCGTTAAGTCACGCCATATATTTCCTGTTGGTCCTTGTAGATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAGGTACTTCCTTTCAGCTTATGTCAATAAATAGATAAACACATCTTAGATGTACATGGGGACTGTGCCCTTGTTGTCCTGTCCACACCTTCTTGGTGCATCGCCCTTTACATGAATAAAGGTTTACTCTCTCAAAAGAAAGATATAACACATTGTAGGCTGGAGTACTGTTTAACCGACACTTGGTGCCTTTCTTTTAGGGTAGGTTACAGAATTTTAGTCCTCTTTTTATAAAACTAACCATGGCAATTTACCAACATCAACTGAATGTTGAATTCACGTTTGTCTAGAATGTCTGCTGGAAATGTGTGCATTCATAAAGTAAGAGTTAATGTGGATACTGGAGTATCTCTTAACTCTTCTTTGTCATATTGTTTTAGCAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGGCGAGAATGAGCAGGCAGTGGAACCCGGAGCTGCTGACGCTGGCAACCGTTGGTGGGGTATCGCAAAGGAGATCCAAATGATTGTCTTTGGCTTCATAACTTCCCTTCTTCCAGGTTTTCACAACATTGACTAGATTGTACAGATCAAGTAGCAGTTGCAGATAGCAAAGAGGGATAAAGAGAATTTTTCTTTTGCTACCATGTTGTTTTGAGAGGACATCAAATGTATAACTTAAAGATAGTTTTCTCTTCTATTTGGTCATAACATAGATCATCATAGTTTTCTCTTCTATTTGGTCATAACATAGATCTAAATGATGTTGTTGTTCTTAATATGATTGGCGAGGTTGTGTTTAAATAGTGAAAAATAGTTGCTTAA</genome_strand>
        <mrna_strand>GGCCTAAGCAAAGCTCCGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAG............................................................................................................................................................................................................................................................................................................................................................................................AGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGGCGAGAATGAGCAGGCAGTGGAACCCGGAGCTGCTGACGCTGGCAACCGTTGGTGGGGTATCGCAAAGGAGATCCAAATGATTGTCTTTGGCTTCATAACTTCCCTTCTTCCAGGTTTTCACAACATTGACTAGATTGTACAGATCAAGTAGCAGTTGCAGATAGCAAAGAGGGATAAAGAGAATTTTTCTTTTGCTACCATGTTGTTTTGAGAGGACATCAAATGTATAACTTAAAGATAGTTTTCTCTTCTATTTGGTCATAACATAGATCATCATAGTTTTCTCTTCTATTTGGTCATAACATAGATCTAAATGATGTTGTTGTTCTTAATATGATTGGCGAGGTTGTGTTTAAATAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725228" ref_strand="+" ref_description="SGN-E725228 [FC26BH04]">
      <seq>aatcggccgaattggggcctaagcaaaccttcaatcttcaaaaacaagagaaaattgagaaagcttcaacggcggaaaaacatgaaaatctcagctcaacatcggaacaacaatcgtcttcttctgcctctgcttatcaaaaatctccagaagaaacccttaagaaacaaccccagctcccatcatttcagggttcaccgatgttaaattatcagatgctccatgccatgtatccaacactgcttcctggagcttccggtatgcagccaatccaggaggagttgaaccatggaccaggcctttatgctgtacctgttgccccttttatgggacaatatgcagggtttccaccaaacactctaattccatttacttacgctgtgcctactggacctagtgttccagacaatggagctgtaggtgaggagcaaggtcagatgggacagcagcagcctcagcagcaacagcttggaccccaacgacaaatagttgtcagaagatttcaaattgcatttcagctagatctcttgcttattttgaagctggctgcagtgatttttttgttcaatcaagatggatcaagacagagacttgttctgcttgtgtttttagcttcacttgtgtacctatatcaaactggagctcttgcacccttggtacggtggctttcacaaggaatgcagagggctgctgcacctccccaaccacctaggccagctgtaagggcagataatgtaccaggtgctggaaggcaaggaaatgacaatgttgcagctggtggagagggacaacctggaggtgaaaatgagaatctactaggtaacgacgtaaatagggtagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64553" stop="72885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64854" g_stop="65013" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="176" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67982" g_stop="68193" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="388" r_length="212" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69811" g_stop="70050" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="628" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70051" i_stop="71995" i_length="1945">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71996" g_stop="72147" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="780" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72148" i_stop="72524" i_length="377">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72525" g_stop="72585" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="841" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E725228" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64854" e_stop="65013"/>
          <exon e_start="67982" e_stop="68193"/>
          <exon e_start="69811" e_stop="70050"/>
          <exon e_start="71996" e_stop="72147"/>
          <exon e_start="72525" e_stop="72585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAGCAAAGCTCCGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAGGTGCCCATTTTCTCAATTAAGTTTTTTTTTTGGTTGATTGAATTTGGTGGAAATTATTTGTTGGGTATGAACTTGAATTGAATAAATTTGGTGTTTTTTTAGTGGTGTAACATTTCTGAATTAGATGGAGTTCCTTATTTTGTCTTCTCGTTTTGGGAATTGAATTAACTGTTTTGGTTACGGTGGAAAATTAGGGTATGTTATAATTTGATGTAAATGTTTTTGGCTTAAAGAGTCTTTGTTGTATATTCTATGTATCTACGATTCAGGAATTACATAAAAATACTGGTGTTGATTATAAAAAAAAAATTGATCTTTGGTCTATTTAAAGCTGTTGATAAGGGCAAAGTAAGTAGGAAAGATGCATGCGATTTGAAGTTCCGCGTGTGTGTAATAGGGATACAGTATAACCTCATCCCGGAACCCTCTTCCAAGTGAAAACAGCTATGCCTTCCCAATTTTCTCCTAGCTTCTAGGTTGAAAGTGGAGTGCTCGTTCGCCACTGGAACAATCTCTCTTATCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCTAAAATCAATGTCTGTTGTAAAAACACCTTACACACGTGTCCTTGGGTGTCCGTTGTTCATATACAGTAATACCTCATCTCAGAATCCTCTTCCAAGAGTCAACAGCTATGCCTTCCCAATTGTCTCCCAGATTCTAGGTTGAAAGCGGAGTGCTGGTGCGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCAAAAATTAATGTCCATTATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAATCCTCTTACAAGAGTCAACAGCTATGCCTTCCCAATTTTCTAGGTTGAAAGCGGAGTGCTGGTGTGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTTTGGAGTTCAGTGTCTTTTTAAGTGTCAAAAATTAATGTCCATAATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAACCGTCTTCCAAGAGTCAACGGCTGTGCCTTCCCAATTTGCTCCCAGATGCCAGGTTGAAAGCGGAGTGCTCGTGCGCCACTGGAGCTTGTCATTTTCCGGGCTTTTATCTTTGGAGTTCAATGTCTTTTACGTGTTAAAAACTAATGCCTGTTGTAAACAAAACCTACACACGTGTCCGTTGTACATACACATTAGCATGTTTCTGTGAGTGGAAATGAAAGATTAATGTCCGTTGTAAACAAACCCTACACACGTCTGTTGTACATATACCTTAGCATGTTTCTGCGAGTGGAAGTGAAAAATTTAATGTCTGTTGTAAAAAACCCTAGACACGTGTCCGTTGTACATATACCTTAGCATGTTTCTGTGAGTGGAAATGGAAAATTAATGTCCGTTATAAACAAACACTACACACGTATCCATTGTACGTATACCTTAGCATGTTCCCGTGAGTGGAAGTGAAAAGTGAATGGCCGTTGTAAACAAACCCTTCAGACGTGTCCGTTGTACATATACCTTAGCACGTTTCTGTGAGTGGAAGTGAGCTATAATGAGGAGAAGTACAATGTCTTGGTAGCTGAATAACCCTAATGAAGTTATAGGTTCTTGGTTTTCTTGCTTTTGATGTCATTATCAAGCATCCAACATTCTCTATTTGTACAGCATTAATTACAGCTCGAAAATTGGTAAGAGTGAATGTCATGCTTATGCATCGGAGGATGTTTTATGTCAATCTACGTGGACTGCTAAACATGTGCTGAATCACCAGACGTGTTAAAAAGGAAATCTATCTTAAAAAATGTTTTTTTTGGTGGGGGTGGGGGAAGAGGTAAAAACTTACCCGTACTTGGTAGTTATCCTAAACCAGGAAAATAAGATGTCCTTTTAACTTTTCAGAGCCACGAAATGCAATCGATTAGCTGCATAATCCCGTGTCTTTTGGAGAGCTATGTTGCAGATTGAAATGTAGAAATTCTAAATTTTCTTTCTAATATTGAGTGCTTCTTGCTTTTCATAATGTATGGATGCATCGATTACTGTTTTTGCTTCATATGCGTGGATGCGATACCATTTGGAATATTCTTTTAATTTGTTGCTCTCTTTATTATAGCCATGATGTAGTGGGTAAATCAGAGATTGGTTATCCGTTACATTTCGATACTGATTGAGATTTAAAACCTATTTTGCAAACTGATGTGAAGGGAATTTCCGAACAGCCTGACACTGCTTGGCATTTAAGACCCAAGAAATAGCTCATTTAGCACTATACCTCCCACTTCACTCTCATATCTTTTTTTTTTTGACTTCTACATTTAAATATGTTTAATCATACAAAACAAGATACAACTGGATATGTTTATCCAAACTGCTTGTAGCATTCCTCGTTTACTTGGTTCCTCAATTTATCCAATTATATGAATTTCTCTTTATCCAACTTGTGGACCATAACAATTCCATTTTTAGAGTATGATTTTTGATCAATTCCTACCTTACCATTCAATCTGGTTTTAGGGGTGCGTGCATCAAGTGACGATTAATGGAGTGGTAATCTGGAAGAGTTAATTCGAAAGATGCTTCTCTCTTATGAACTTGATTGCACCACTCACGACAATTGCTGAATTTGGTAGGATTATAAGTCTTGGTCTATGCCTAACAATACATTCATGCGAGTTGTCTTCATTATGGCCATGTCGAAAGGATTGACTGGCCACCTTTTGGCAGGCAAATGCCTTTGCAAGTTTGAGAGCCTGGATATTTTGCAGCCACTAACTTTTCCTTTTCAGTAGGATATTGCTTGGTTTTTTATAAACTTTTTTTGTGAAAGAAAATGCTTACTCGCATTTGAGAAGTTATTCGCTAATTCTTTTATCTGTTTTTACAGCTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTACGTAAGTGTCCCTGAGATTTTAGATCTAGTTTTTGATGTATAAGTTGTCATCATTATCTTGCGTAGCCTCTGTAATTGGCATGCTGGCTTCTCCTTATTTTCTATTGTTCCTTTAAATTAATGCATCATATTCAGTTCGATAGCTGTATCTGCTTAGTACTCAGCTAGTTGAATCCATATCTGATGTAGCAAGAATTGTAGATTTGTGCATGTATTTTCAATGCTTTTATAATCAAAGATGAAGTTCTCTATTCAGGAGTACAACATGTCAGGTGTTTAAGAAATTCTCTGCTGCATCAGTAGAAGTGTGTTTTAACCAATTTTGGCTCCTTTTTTAAAAAAAGCTCCCAAGTCCATAGCACCAGGGCTGGAAGGATTCTTCTGGCTAGACAATGGAAACATGGCAATTGAAGTTGCTTCAGTCTAGAATATCCAACCTCCTTTAAGCATCCAAGAGTAGGAAAATAAAAATAAATAGAATGATAATGACAAAAAGAATAAGACTTACCTGTCACAGACCATTTAAGTTGGAATGAGGATGATTTTAGTATTTCTTGGTACACCTACAAATCTGCTGTTCAGAGCTTCTTGTGTACATGCAATACACTGACTAAATTCTGGCACCATACTTATGCTAGAAATATTTGACACCCCTTTAACTTCTGAATTTATATTTTGGAATCGAAGTCTAAACTAGCAACAAGACTACAATGCCACAATTCCAACCAAGTTTGGGTTGTCTACATGAATCCTCATTGACCATGTCGCTCCATTTAAACCCTCTCAGGCAGTTCTCCTAAACTCTGCAAAAGTTATATTGGATAGTTGTCAGTCTTTAATAGGCAAGTAACTGACCTTAGTATTCAGTTAAGTTTTTGAATCATTTGTGGCAGGGAGGGAGAAAGATTGTGATGGTGATTTATTTAGATTCTCTTTAGCAAAATACGGTAAAAGCTTTTTATAGATGCACAGTAAACAATTCTCATTTTTGTTTTCTGTAACATTTCATGTTGGCCAAGTCTCAGATTCTGGTCTGTGGTATTATATTGTCATTAAGGTTGAACTCCTGAATAGTCGCCCATTGATAAGGAGCCTAATGTGGTGTCGTACTGTGCTGGACATGATTAATGTGACTAGCACCTTTTCCTGTACATACTTAGCAGCTTTTTTGCTGCTGATTATAAAATAGCACTTTTTTACTTTAACCTAATCAACAAATTAAAAGATGTTACTCTGGTCATTTCTCTTTCTGTTCTCCACTTGGTGTTCATGCCTGTTAGTTGCTTGAAGATATATAGTTCTTTGTTACTATTGTTGTACTTATCATCTGCTTAAATGACATCAACCTAAAATACTAGGGATGAAGCCATACTTACTTCTCATGCACCTGGAAACTGGTAGGTATATATATCCACTCAATTGCATGTCATGTTATTGATATCTTTATTCCCTTCATTAGCCTTCATACTCTGACAAAACACGAAGCCTTAAGGAAGTGTTGGAATTATGCTTTCTAGTTTCTTAGAAGGGCTACTTCCCTAAAAAAACCTATTTGAGCAGAGCCTTATTTGTCTCTCCTTGCTAAAAATTAAAAAGCAAAACATGCTGCTCTTGACAGTGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCTGTAAGTGTTTGTCAATTATGATCACTTCCCTTTTATTTATTTATTTATTTATTTATTTTATTTGTTGTGATGTGCGTCACTCAAGCCGAAGTTCTTTCAGAAACTGTCTCTCTACTTCCACAAGGTAGCGATAAGTCTGTGTACGCTCTACCCTTCCCGGACCCCACTTATGGGACTACACTGGGTTATTGCTTATTCATTTTATTAAATACTAACAGTTTGGTCTTAAAAGCTGTTGTGACAATTAAGAATTCTTTTGGACGCGTCAATTTCTGCAAGATAACCAATATGAATGAGAATGTGGATATACTAAAAGATAAACTAAAGTTCCCTTTTTCTTTGGAAAAGAAAGCAGCTAAGTTGTCCCTACATTTGTATTGTTCTCCTAAATAGCATTCAGATCTTCAGTTGCTTTTTATAGTTTATAATATCCATTTCCTTGATTTCCTTTCTTGGGCATAGTTCTTTTGGTGCTTTTGGTCTCCTCTTCCATTCTCTCTTTGCTCCATTGTGGAACACTAAAGTGAATTGTTCATTGTCTTGAAAGTGAATCCTCTAGCCTTTCTCCTCCCGACCATTTATGCTTGTTTACGCGGCCCCATTAGGTATGTTTGCGTACCACAGTAACCAACTTGAACAAGGGTGTGTTCGGTTTGAAGGAAAATGTTCTCTAGGAAAATAAGTGGGGTTCCTACTAATATTTCTTGTGTTAAGTAAGTAAGCAAAAAATATTATCCTAAATGCCTTTGTATATAACTAAGACAAATACTATGGGAGGTGGGGTGAGGAGGTATGGGTGTGGGATGGTGGGAATGAGGGCTATGGGGTGGGAGTGAAGATGACGTGCATTTGGAGTGTTGGGAGGAAACAATCAATGTGGAATGTCAGTAGTAGAGCTTGTTTTTCCTTCTTCCATTAGGGAGCTCACTTTTCTCATTTTTATGGAGCTGCTTTTCCTGGAGAAAATGTATCCCCAAATATTTGACAGCCGAACATGGGAAAATTGGAAAATATTTTTCGAGTGTAGTGCTAAAATGCCTCCATATATTTCGTTTCTTGTTTTTTTTTAGAAGGTAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGAAATACTTGCATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAGGTCATAAGAACTCTAATATACTAGGAATATCCTCTGCATCTTGAAGATATTCATGTTTACACCAAAAAAAGAAAAGAACCAGGAGAGCAGCTCTTGTTTTTAAAACATCTTTGGTTCCTCTCCATCCATATAGACCACCAAATGCAGGCCGGGACAATCTTCCATCTCTCCCTGTGTCCTGACTGATTCCCATCTCTGTTCCAGCAAGCTAAAGCTTCTTTGATGTTCCTTGGCATAGTCAACTGATGCCCCTTAAATTGATGAAAATGTGCCGCAACTTCGCAGTCTCTCTACAATGTAGGAAGAGATTATTTATTATCTCGACCTCACATTCAAAAGTCAAAACCAACACCTGGAACAGATTTGCTTACCTCTTTTGATGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGCCAACAGCCAAGTGAAACAAGCTATCTTGAATGGTATCTTCACTTTCCAGTCGTTAGTTAGTTTTTTCTAATGATAAAATCATATAATTTGCATTGTGGTTGAATTGCCTATGAAAGAGGGAGAACTTGGAGCATGTGACATATATTAGGAATCTGTAACTTTTGACTTTTGGCTTATTTTGTTCTTTGGCTTAAAAGCACTTCTTATCTTACCCAAACACTACAAAAGTGCTTAAAACTATTTGGCGTAAAAGCACCTAAAAATAAGCCAATCCAAACAGGATCTTACTATTGTATTCATTGAAATACGTGTTTTTTATTTGCTTCGTCGTTAAGTCACGCCATATATTTCCTGTTGGTCCTTGTAGATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAGGTACTTCCTTTCAGCTTATGTCAATAAATAGATAAACACATCTTAGATGTACATGGGGACTGTGCCCTTGTTGTCCTGTCCACACCTTCTTGGTGCATCGCCCTTTACATGAATAAAGGTTTACTCTCTCAAAAGAAAGATATAACACATTGTAGGCTGGAGTACTGTTTAACCGACACTTGGTGCCTTTCTTTTAGGGTAGGTTACAGAATTTTAGTCCTCTTTTTATAAAACTAACCATGGCAATTTACCAACATCAACTGAATGTTGAATTCACGTTTGTCTAGAATGTCTGCTGGAAATGTGTGCATTCATAAAGTAAGAGTTAATGTGGATACTGGAGTATCTCTTAACTCTTCTTTGTCATATTGTTTTAGCAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGG</genome_strand>
        <mrna_strand>GCCTAAGCAAACCTTCAATCTTCAAAAACAAGAGAAAATTGAGAAAGCTTCAACGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCATGCCATGTATCCAACACTGCTTCCTGGAGCTTCCGGTATGCAGCCAATCCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTGCCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTAGTGTTCCAGACAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................GAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGACGTAAATAGGGTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307755" ref_strand="+" ref_description="SGN-E307755 [cLEY-16-L15]">
      <seq>cgatcttcacaagcaagagaaaatagagaaagcttcaatggcggaaaaacatgaaaatatcagctcaacatcggaacaacaatcgtcttcttctgcctctgcttatcaaaaatctccagaagaaacccttaagaaacaaccccagctcccatcatttcagggttcaccgatgttaaattatcagatgctccaagccatgtatccaacactgctgcctggagctttcggtatgcagccaaatcaggaggagttgaaccatggaccaggcctttatgctgtacctgttgccccttttatgggacaatatgcagggtttccaccaaacactctaattccattgacttacgctgtacctactggacctagtgttccagaaaatggagctgtatgtgaggagcaaggtcagatgggacagcagcagcctcagcagcaacagcttggaccccaacgacaaatagttgtcagaagatttcaaattgcatttcagctagatctcttgcttattatgaagctggctgcagtgatatttttgttcaatcaagatggatcaagacagagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64569" stop="70313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64869" g_stop="65013" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67982" g_stop="68193" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="357" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69811" g_stop="70013" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="560" r_length="203" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E307755" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64869" e_stop="65013"/>
          <exon e_start="67982" e_stop="68193"/>
          <exon e_start="69811" e_stop="70013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAGGTGCCCATTTTCTCAATTAAGTTTTTTTTTTGGTTGATTGAATTTGGTGGAAATTATTTGTTGGGTATGAACTTGAATTGAATAAATTTGGTGTTTTTTTAGTGGTGTAACATTTCTGAATTAGATGGAGTTCCTTATTTTGTCTTCTCGTTTTGGGAATTGAATTAACTGTTTTGGTTACGGTGGAAAATTAGGGTATGTTATAATTTGATGTAAATGTTTTTGGCTTAAAGAGTCTTTGTTGTATATTCTATGTATCTACGATTCAGGAATTACATAAAAATACTGGTGTTGATTATAAAAAAAAAATTGATCTTTGGTCTATTTAAAGCTGTTGATAAGGGCAAAGTAAGTAGGAAAGATGCATGCGATTTGAAGTTCCGCGTGTGTGTAATAGGGATACAGTATAACCTCATCCCGGAACCCTCTTCCAAGTGAAAACAGCTATGCCTTCCCAATTTTCTCCTAGCTTCTAGGTTGAAAGTGGAGTGCTCGTTCGCCACTGGAACAATCTCTCTTATCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCTAAAATCAATGTCTGTTGTAAAAACACCTTACACACGTGTCCTTGGGTGTCCGTTGTTCATATACAGTAATACCTCATCTCAGAATCCTCTTCCAAGAGTCAACAGCTATGCCTTCCCAATTGTCTCCCAGATTCTAGGTTGAAAGCGGAGTGCTGGTGCGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCAAAAATTAATGTCCATTATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAATCCTCTTACAAGAGTCAACAGCTATGCCTTCCCAATTTTCTAGGTTGAAAGCGGAGTGCTGGTGTGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTTTGGAGTTCAGTGTCTTTTTAAGTGTCAAAAATTAATGTCCATAATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAACCGTCTTCCAAGAGTCAACGGCTGTGCCTTCCCAATTTGCTCCCAGATGCCAGGTTGAAAGCGGAGTGCTCGTGCGCCACTGGAGCTTGTCATTTTCCGGGCTTTTATCTTTGGAGTTCAATGTCTTTTACGTGTTAAAAACTAATGCCTGTTGTAAACAAAACCTACACACGTGTCCGTTGTACATACACATTAGCATGTTTCTGTGAGTGGAAATGAAAGATTAATGTCCGTTGTAAACAAACCCTACACACGTCTGTTGTACATATACCTTAGCATGTTTCTGCGAGTGGAAGTGAAAAATTTAATGTCTGTTGTAAAAAACCCTAGACACGTGTCCGTTGTACATATACCTTAGCATGTTTCTGTGAGTGGAAATGGAAAATTAATGTCCGTTATAAACAAACACTACACACGTATCCATTGTACGTATACCTTAGCATGTTCCCGTGAGTGGAAGTGAAAAGTGAATGGCCGTTGTAAACAAACCCTTCAGACGTGTCCGTTGTACATATACCTTAGCACGTTTCTGTGAGTGGAAGTGAGCTATAATGAGGAGAAGTACAATGTCTTGGTAGCTGAATAACCCTAATGAAGTTATAGGTTCTTGGTTTTCTTGCTTTTGATGTCATTATCAAGCATCCAACATTCTCTATTTGTACAGCATTAATTACAGCTCGAAAATTGGTAAGAGTGAATGTCATGCTTATGCATCGGAGGATGTTTTATGTCAATCTACGTGGACTGCTAAACATGTGCTGAATCACCAGACGTGTTAAAAAGGAAATCTATCTTAAAAAATGTTTTTTTTGGTGGGGGTGGGGGAAGAGGTAAAAACTTACCCGTACTTGGTAGTTATCCTAAACCAGGAAAATAAGATGTCCTTTTAACTTTTCAGAGCCACGAAATGCAATCGATTAGCTGCATAATCCCGTGTCTTTTGGAGAGCTATGTTGCAGATTGAAATGTAGAAATTCTAAATTTTCTTTCTAATATTGAGTGCTTCTTGCTTTTCATAATGTATGGATGCATCGATTACTGTTTTTGCTTCATATGCGTGGATGCGATACCATTTGGAATATTCTTTTAATTTGTTGCTCTCTTTATTATAGCCATGATGTAGTGGGTAAATCAGAGATTGGTTATCCGTTACATTTCGATACTGATTGAGATTTAAAACCTATTTTGCAAACTGATGTGAAGGGAATTTCCGAACAGCCTGACACTGCTTGGCATTTAAGACCCAAGAAATAGCTCATTTAGCACTATACCTCCCACTTCACTCTCATATCTTTTTTTTTTTGACTTCTACATTTAAATATGTTTAATCATACAAAACAAGATACAACTGGATATGTTTATCCAAACTGCTTGTAGCATTCCTCGTTTACTTGGTTCCTCAATTTATCCAATTATATGAATTTCTCTTTATCCAACTTGTGGACCATAACAATTCCATTTTTAGAGTATGATTTTTGATCAATTCCTACCTTACCATTCAATCTGGTTTTAGGGGTGCGTGCATCAAGTGACGATTAATGGAGTGGTAATCTGGAAGAGTTAATTCGAAAGATGCTTCTCTCTTATGAACTTGATTGCACCACTCACGACAATTGCTGAATTTGGTAGGATTATAAGTCTTGGTCTATGCCTAACAATACATTCATGCGAGTTGTCTTCATTATGGCCATGTCGAAAGGATTGACTGGCCACCTTTTGGCAGGCAAATGCCTTTGCAAGTTTGAGAGCCTGGATATTTTGCAGCCACTAACTTTTCCTTTTCAGTAGGATATTGCTTGGTTTTTTATAAACTTTTTTTGTGAAAGAAAATGCTTACTCGCATTTGAGAAGTTATTCGCTAATTCTTTTATCTGTTTTTACAGCTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTACGTAAGTGTCCCTGAGATTTTAGATCTAGTTTTTGATGTATAAGTTGTCATCATTATCTTGCGTAGCCTCTGTAATTGGCATGCTGGCTTCTCCTTATTTTCTATTGTTCCTTTAAATTAATGCATCATATTCAGTTCGATAGCTGTATCTGCTTAGTACTCAGCTAGTTGAATCCATATCTGATGTAGCAAGAATTGTAGATTTGTGCATGTATTTTCAATGCTTTTATAATCAAAGATGAAGTTCTCTATTCAGGAGTACAACATGTCAGGTGTTTAAGAAATTCTCTGCTGCATCAGTAGAAGTGTGTTTTAACCAATTTTGGCTCCTTTTTTAAAAAAAGCTCCCAAGTCCATAGCACCAGGGCTGGAAGGATTCTTCTGGCTAGACAATGGAAACATGGCAATTGAAGTTGCTTCAGTCTAGAATATCCAACCTCCTTTAAGCATCCAAGAGTAGGAAAATAAAAATAAATAGAATGATAATGACAAAAAGAATAAGACTTACCTGTCACAGACCATTTAAGTTGGAATGAGGATGATTTTAGTATTTCTTGGTACACCTACAAATCTGCTGTTCAGAGCTTCTTGTGTACATGCAATACACTGACTAAATTCTGGCACCATACTTATGCTAGAAATATTTGACACCCCTTTAACTTCTGAATTTATATTTTGGAATCGAAGTCTAAACTAGCAACAAGACTACAATGCCACAATTCCAACCAAGTTTGGGTTGTCTACATGAATCCTCATTGACCATGTCGCTCCATTTAAACCCTCTCAGGCAGTTCTCCTAAACTCTGCAAAAGTTATATTGGATAGTTGTCAGTCTTTAATAGGCAAGTAACTGACCTTAGTATTCAGTTAAGTTTTTGAATCATTTGTGGCAGGGAGGGAGAAAGATTGTGATGGTGATTTATTTAGATTCTCTTTAGCAAAATACGGTAAAAGCTTTTTATAGATGCACAGTAAACAATTCTCATTTTTGTTTTCTGTAACATTTCATGTTGGCCAAGTCTCAGATTCTGGTCTGTGGTATTATATTGTCATTAAGGTTGAACTCCTGAATAGTCGCCCATTGATAAGGAGCCTAATGTGGTGTCGTACTGTGCTGGACATGATTAATGTGACTAGCACCTTTTCCTGTACATACTTAGCAGCTTTTTTGCTGCTGATTATAAAATAGCACTTTTTTACTTTAACCTAATCAACAAATTAAAAGATGTTACTCTGGTCATTTCTCTTTCTGTTCTCCACTTGGTGTTCATGCCTGTTAGTTGCTTGAAGATATATAGTTCTTTGTTACTATTGTTGTACTTATCATCTGCTTAAATGACATCAACCTAAAATACTAGGGATGAAGCCATACTTACTTCTCATGCACCTGGAAACTGGTAGGTATATATATCCACTCAATTGCATGTCATGTTATTGATATCTTTATTCCCTTCATTAGCCTTCATACTCTGACAAAACACGAAGCCTTAAGGAAGTGTTGGAATTATGCTTTCTAGTTTCTTAGAAGGGCTACTTCCCTAAAAAAACCTATTTGAGCAGAGCCTTATTTGTCTCTCCTTGCTAAAAATTAAAAAGCAAAACATGCTGCTCTTGACAGTGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGAC</genome_strand>
        <mrna_strand>CGATCTTCACAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATATCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTGCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTGACTTACGCTGTACCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTAGTGTTCCAGAAAATGGAGCTGTATGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTATGAAGCTGGCTGCAGTGATATTTTTGTTCAATCAAGATGGATCAAGACAGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320906" ref_strand="+" ref_description="SGN-E320906 [cTOB-13-E19]">
      <seq>cgatcttcaaaagcaagagaaaatagagaaagcttcaatggcggaaaaacatgaaaatctcagctcaacatcggaacaacaatcgtcttcttctgcctctgcttatcaaaaatctccagaagaaacccttaagaaacaaccccagctcccatcatttcagggttcaccgatgttaaattatcagatgctccaagccatgtatccaacactgcttcctggagctttcggtatgcagccaaatcaggaggagttgaaccatggaccaggcctttatgctgtacctgttgccccttttatgggacaatatgcagggtttccaccaaacactctaattccatttacttacgctgtacctactggacctagtgttccagaaaatggagctgtaggtgaggagcaaggtcagatgggacagcagcagcctcagcagcaacagcttggaccccaacgacaaatagttgtcagaagatttcaaattgcatttcagctagatctcttgcttattttgaagctggctgcagtgattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64569" stop="70284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64869" g_stop="65013" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67982" g_stop="68193" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="357" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69811" g_stop="69984" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="531" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E320906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64869" e_stop="65013"/>
          <exon e_start="67982" e_stop="68193"/>
          <exon e_start="69811" e_stop="69984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAGGTGCCCATTTTCTCAATTAAGTTTTTTTTTTGGTTGATTGAATTTGGTGGAAATTATTTGTTGGGTATGAACTTGAATTGAATAAATTTGGTGTTTTTTTAGTGGTGTAACATTTCTGAATTAGATGGAGTTCCTTATTTTGTCTTCTCGTTTTGGGAATTGAATTAACTGTTTTGGTTACGGTGGAAAATTAGGGTATGTTATAATTTGATGTAAATGTTTTTGGCTTAAAGAGTCTTTGTTGTATATTCTATGTATCTACGATTCAGGAATTACATAAAAATACTGGTGTTGATTATAAAAAAAAAATTGATCTTTGGTCTATTTAAAGCTGTTGATAAGGGCAAAGTAAGTAGGAAAGATGCATGCGATTTGAAGTTCCGCGTGTGTGTAATAGGGATACAGTATAACCTCATCCCGGAACCCTCTTCCAAGTGAAAACAGCTATGCCTTCCCAATTTTCTCCTAGCTTCTAGGTTGAAAGTGGAGTGCTCGTTCGCCACTGGAACAATCTCTCTTATCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCTAAAATCAATGTCTGTTGTAAAAACACCTTACACACGTGTCCTTGGGTGTCCGTTGTTCATATACAGTAATACCTCATCTCAGAATCCTCTTCCAAGAGTCAACAGCTATGCCTTCCCAATTGTCTCCCAGATTCTAGGTTGAAAGCGGAGTGCTGGTGCGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCAAAAATTAATGTCCATTATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAATCCTCTTACAAGAGTCAACAGCTATGCCTTCCCAATTTTCTAGGTTGAAAGCGGAGTGCTGGTGTGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTTTGGAGTTCAGTGTCTTTTTAAGTGTCAAAAATTAATGTCCATAATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAACCGTCTTCCAAGAGTCAACGGCTGTGCCTTCCCAATTTGCTCCCAGATGCCAGGTTGAAAGCGGAGTGCTCGTGCGCCACTGGAGCTTGTCATTTTCCGGGCTTTTATCTTTGGAGTTCAATGTCTTTTACGTGTTAAAAACTAATGCCTGTTGTAAACAAAACCTACACACGTGTCCGTTGTACATACACATTAGCATGTTTCTGTGAGTGGAAATGAAAGATTAATGTCCGTTGTAAACAAACCCTACACACGTCTGTTGTACATATACCTTAGCATGTTTCTGCGAGTGGAAGTGAAAAATTTAATGTCTGTTGTAAAAAACCCTAGACACGTGTCCGTTGTACATATACCTTAGCATGTTTCTGTGAGTGGAAATGGAAAATTAATGTCCGTTATAAACAAACACTACACACGTATCCATTGTACGTATACCTTAGCATGTTCCCGTGAGTGGAAGTGAAAAGTGAATGGCCGTTGTAAACAAACCCTTCAGACGTGTCCGTTGTACATATACCTTAGCACGTTTCTGTGAGTGGAAGTGAGCTATAATGAGGAGAAGTACAATGTCTTGGTAGCTGAATAACCCTAATGAAGTTATAGGTTCTTGGTTTTCTTGCTTTTGATGTCATTATCAAGCATCCAACATTCTCTATTTGTACAGCATTAATTACAGCTCGAAAATTGGTAAGAGTGAATGTCATGCTTATGCATCGGAGGATGTTTTATGTCAATCTACGTGGACTGCTAAACATGTGCTGAATCACCAGACGTGTTAAAAAGGAAATCTATCTTAAAAAATGTTTTTTTTGGTGGGGGTGGGGGAAGAGGTAAAAACTTACCCGTACTTGGTAGTTATCCTAAACCAGGAAAATAAGATGTCCTTTTAACTTTTCAGAGCCACGAAATGCAATCGATTAGCTGCATAATCCCGTGTCTTTTGGAGAGCTATGTTGCAGATTGAAATGTAGAAATTCTAAATTTTCTTTCTAATATTGAGTGCTTCTTGCTTTTCATAATGTATGGATGCATCGATTACTGTTTTTGCTTCATATGCGTGGATGCGATACCATTTGGAATATTCTTTTAATTTGTTGCTCTCTTTATTATAGCCATGATGTAGTGGGTAAATCAGAGATTGGTTATCCGTTACATTTCGATACTGATTGAGATTTAAAACCTATTTTGCAAACTGATGTGAAGGGAATTTCCGAACAGCCTGACACTGCTTGGCATTTAAGACCCAAGAAATAGCTCATTTAGCACTATACCTCCCACTTCACTCTCATATCTTTTTTTTTTTGACTTCTACATTTAAATATGTTTAATCATACAAAACAAGATACAACTGGATATGTTTATCCAAACTGCTTGTAGCATTCCTCGTTTACTTGGTTCCTCAATTTATCCAATTATATGAATTTCTCTTTATCCAACTTGTGGACCATAACAATTCCATTTTTAGAGTATGATTTTTGATCAATTCCTACCTTACCATTCAATCTGGTTTTAGGGGTGCGTGCATCAAGTGACGATTAATGGAGTGGTAATCTGGAAGAGTTAATTCGAAAGATGCTTCTCTCTTATGAACTTGATTGCACCACTCACGACAATTGCTGAATTTGGTAGGATTATAAGTCTTGGTCTATGCCTAACAATACATTCATGCGAGTTGTCTTCATTATGGCCATGTCGAAAGGATTGACTGGCCACCTTTTGGCAGGCAAATGCCTTTGCAAGTTTGAGAGCCTGGATATTTTGCAGCCACTAACTTTTCCTTTTCAGTAGGATATTGCTTGGTTTTTTATAAACTTTTTTTGTGAAAGAAAATGCTTACTCGCATTTGAGAAGTTATTCGCTAATTCTTTTATCTGTTTTTACAGCTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTACGTAAGTGTCCCTGAGATTTTAGATCTAGTTTTTGATGTATAAGTTGTCATCATTATCTTGCGTAGCCTCTGTAATTGGCATGCTGGCTTCTCCTTATTTTCTATTGTTCCTTTAAATTAATGCATCATATTCAGTTCGATAGCTGTATCTGCTTAGTACTCAGCTAGTTGAATCCATATCTGATGTAGCAAGAATTGTAGATTTGTGCATGTATTTTCAATGCTTTTATAATCAAAGATGAAGTTCTCTATTCAGGAGTACAACATGTCAGGTGTTTAAGAAATTCTCTGCTGCATCAGTAGAAGTGTGTTTTAACCAATTTTGGCTCCTTTTTTAAAAAAAGCTCCCAAGTCCATAGCACCAGGGCTGGAAGGATTCTTCTGGCTAGACAATGGAAACATGGCAATTGAAGTTGCTTCAGTCTAGAATATCCAACCTCCTTTAAGCATCCAAGAGTAGGAAAATAAAAATAAATAGAATGATAATGACAAAAAGAATAAGACTTACCTGTCACAGACCATTTAAGTTGGAATGAGGATGATTTTAGTATTTCTTGGTACACCTACAAATCTGCTGTTCAGAGCTTCTTGTGTACATGCAATACACTGACTAAATTCTGGCACCATACTTATGCTAGAAATATTTGACACCCCTTTAACTTCTGAATTTATATTTTGGAATCGAAGTCTAAACTAGCAACAAGACTACAATGCCACAATTCCAACCAAGTTTGGGTTGTCTACATGAATCCTCATTGACCATGTCGCTCCATTTAAACCCTCTCAGGCAGTTCTCCTAAACTCTGCAAAAGTTATATTGGATAGTTGTCAGTCTTTAATAGGCAAGTAACTGACCTTAGTATTCAGTTAAGTTTTTGAATCATTTGTGGCAGGGAGGGAGAAAGATTGTGATGGTGATTTATTTAGATTCTCTTTAGCAAAATACGGTAAAAGCTTTTTATAGATGCACAGTAAACAATTCTCATTTTTGTTTTCTGTAACATTTCATGTTGGCCAAGTCTCAGATTCTGGTCTGTGGTATTATATTGTCATTAAGGTTGAACTCCTGAATAGTCGCCCATTGATAAGGAGCCTAATGTGGTGTCGTACTGTGCTGGACATGATTAATGTGACTAGCACCTTTTCCTGTACATACTTAGCAGCTTTTTTGCTGCTGATTATAAAATAGCACTTTTTTACTTTAACCTAATCAACAAATTAAAAGATGTTACTCTGGTCATTTCTCTTTCTGTTCTCCACTTGGTGTTCATGCCTGTTAGTTGCTTGAAGATATATAGTTCTTTGTTACTATTGTTGTACTTATCATCTGCTTAAATGACATCAACCTAAAATACTAGGGATGAAGCCATACTTACTTCTCATGCACCTGGAAACTGGTAGGTATATATATCCACTCAATTGCATGTCATGTTATTGATATCTTTATTCCCTTCATTAGCCTTCATACTCTGACAAAACACGAAGCCTTAAGGAAGTGTTGGAATTATGCTTTCTAGTTTCTTAGAAGGGCTACTTCCCTAAAAAAACCTATTTGAGCAGAGCCTTATTTGTCTCTCCTTGCTAAAAATTAAAAAGCAAAACATGCTGCTCTTGACAGTGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTT</genome_strand>
        <mrna_strand>CGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708046" ref_strand="+" ref_description="SGN-E708046 [FA34CG12]">
      <seq>ccgataagcgttcatggcggaaaaacatgaaaatctcagctcaacatcggaacaacaatcgtcttcttctgcctctgcttatcaaaaatctccagaagaaacccttaagaaacaaccccagctcccatcatttcagggttcaccgatgttaaattatcagatgctccatgccatgtatccaacactgcttcctggagcttccggtatgcagccaatccaggaggagttgaaccatggaccaggcctttatgctgtacctgttgccccttttatgggacaatatgcagggtttccaccaaacactctaattccatttacttacgctgtgcctactggacctagtgttccagacaatggagctgtaggtgaggagcaaggtcagatgggacagcagcagcctcagcagcaacagcttggaccccaacgacaaatagttgtcagaagatttcaaattgcatttcagctagatctcttgcttattttgaagctggctgcagtgatttttttgttcaatcaagatggatcaagacagagacttgttctgcttgtgtttttagcttcacttgtgtacctatatcaaactggagctcttgcacccttggtacggtggctttcacaaggaatgcagagggctgctgcacctccccaaccacctaggccagctgtaagggcagataatgtaccaggtgctggaaggcaaggaaatgacaatgttgcagctggtggagagggacaacctggaggtgaaaatgagaatctactaggtaacgacgtaaatagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64596" stop="72880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64892" g_stop="65013" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67982" g_stop="68193" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="333" r_length="212" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69811" g_stop="70050" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="573" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70051" i_stop="71995" i_length="1945">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71996" g_stop="72147" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="725" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72148" i_stop="72524" i_length="377">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72525" g_stop="72580" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="781" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E708046" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64892" e_stop="65013"/>
          <exon e_start="67982" e_stop="68193"/>
          <exon e_start="69811" e_stop="70050"/>
          <exon e_start="71996" e_stop="72147"/>
          <exon e_start="72525" e_stop="72580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAGGTGCCCATTTTCTCAATTAAGTTTTTTTTTTGGTTGATTGAATTTGGTGGAAATTATTTGTTGGGTATGAACTTGAATTGAATAAATTTGGTGTTTTTTTAGTGGTGTAACATTTCTGAATTAGATGGAGTTCCTTATTTTGTCTTCTCGTTTTGGGAATTGAATTAACTGTTTTGGTTACGGTGGAAAATTAGGGTATGTTATAATTTGATGTAAATGTTTTTGGCTTAAAGAGTCTTTGTTGTATATTCTATGTATCTACGATTCAGGAATTACATAAAAATACTGGTGTTGATTATAAAAAAAAAATTGATCTTTGGTCTATTTAAAGCTGTTGATAAGGGCAAAGTAAGTAGGAAAGATGCATGCGATTTGAAGTTCCGCGTGTGTGTAATAGGGATACAGTATAACCTCATCCCGGAACCCTCTTCCAAGTGAAAACAGCTATGCCTTCCCAATTTTCTCCTAGCTTCTAGGTTGAAAGTGGAGTGCTCGTTCGCCACTGGAACAATCTCTCTTATCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCTAAAATCAATGTCTGTTGTAAAAACACCTTACACACGTGTCCTTGGGTGTCCGTTGTTCATATACAGTAATACCTCATCTCAGAATCCTCTTCCAAGAGTCAACAGCTATGCCTTCCCAATTGTCTCCCAGATTCTAGGTTGAAAGCGGAGTGCTGGTGCGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTCTGGAGTTCAATGTCTTTTTAAGTGTCAAAAATTAATGTCCATTATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAATCCTCTTACAAGAGTCAACAGCTATGCCTTCCCAATTTTCTAGGTTGAAAGCGGAGTGCTGGTGTGCCACTGGAACAATCTTTCTTGTCATGGCTTTAATCTTTGGAGTTCAGTGTCTTTTTAAGTGTCAAAAATTAATGTCCATAATAAACAAACCTTACACACGTGTCCTTGGTTATCTGTTGTTCATATACAGTAAAACCTCATCTCAGAACCGTCTTCCAAGAGTCAACGGCTGTGCCTTCCCAATTTGCTCCCAGATGCCAGGTTGAAAGCGGAGTGCTCGTGCGCCACTGGAGCTTGTCATTTTCCGGGCTTTTATCTTTGGAGTTCAATGTCTTTTACGTGTTAAAAACTAATGCCTGTTGTAAACAAAACCTACACACGTGTCCGTTGTACATACACATTAGCATGTTTCTGTGAGTGGAAATGAAAGATTAATGTCCGTTGTAAACAAACCCTACACACGTCTGTTGTACATATACCTTAGCATGTTTCTGCGAGTGGAAGTGAAAAATTTAATGTCTGTTGTAAAAAACCCTAGACACGTGTCCGTTGTACATATACCTTAGCATGTTTCTGTGAGTGGAAATGGAAAATTAATGTCCGTTATAAACAAACACTACACACGTATCCATTGTACGTATACCTTAGCATGTTCCCGTGAGTGGAAGTGAAAAGTGAATGGCCGTTGTAAACAAACCCTTCAGACGTGTCCGTTGTACATATACCTTAGCACGTTTCTGTGAGTGGAAGTGAGCTATAATGAGGAGAAGTACAATGTCTTGGTAGCTGAATAACCCTAATGAAGTTATAGGTTCTTGGTTTTCTTGCTTTTGATGTCATTATCAAGCATCCAACATTCTCTATTTGTACAGCATTAATTACAGCTCGAAAATTGGTAAGAGTGAATGTCATGCTTATGCATCGGAGGATGTTTTATGTCAATCTACGTGGACTGCTAAACATGTGCTGAATCACCAGACGTGTTAAAAAGGAAATCTATCTTAAAAAATGTTTTTTTTGGTGGGGGTGGGGGAAGAGGTAAAAACTTACCCGTACTTGGTAGTTATCCTAAACCAGGAAAATAAGATGTCCTTTTAACTTTTCAGAGCCACGAAATGCAATCGATTAGCTGCATAATCCCGTGTCTTTTGGAGAGCTATGTTGCAGATTGAAATGTAGAAATTCTAAATTTTCTTTCTAATATTGAGTGCTTCTTGCTTTTCATAATGTATGGATGCATCGATTACTGTTTTTGCTTCATATGCGTGGATGCGATACCATTTGGAATATTCTTTTAATTTGTTGCTCTCTTTATTATAGCCATGATGTAGTGGGTAAATCAGAGATTGGTTATCCGTTACATTTCGATACTGATTGAGATTTAAAACCTATTTTGCAAACTGATGTGAAGGGAATTTCCGAACAGCCTGACACTGCTTGGCATTTAAGACCCAAGAAATAGCTCATTTAGCACTATACCTCCCACTTCACTCTCATATCTTTTTTTTTTTGACTTCTACATTTAAATATGTTTAATCATACAAAACAAGATACAACTGGATATGTTTATCCAAACTGCTTGTAGCATTCCTCGTTTACTTGGTTCCTCAATTTATCCAATTATATGAATTTCTCTTTATCCAACTTGTGGACCATAACAATTCCATTTTTAGAGTATGATTTTTGATCAATTCCTACCTTACCATTCAATCTGGTTTTAGGGGTGCGTGCATCAAGTGACGATTAATGGAGTGGTAATCTGGAAGAGTTAATTCGAAAGATGCTTCTCTCTTATGAACTTGATTGCACCACTCACGACAATTGCTGAATTTGGTAGGATTATAAGTCTTGGTCTATGCCTAACAATACATTCATGCGAGTTGTCTTCATTATGGCCATGTCGAAAGGATTGACTGGCCACCTTTTGGCAGGCAAATGCCTTTGCAAGTTTGAGAGCCTGGATATTTTGCAGCCACTAACTTTTCCTTTTCAGTAGGATATTGCTTGGTTTTTTATAAACTTTTTTTGTGAAAGAAAATGCTTACTCGCATTTGAGAAGTTATTCGCTAATTCTTTTATCTGTTTTTACAGCTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTACGTAAGTGTCCCTGAGATTTTAGATCTAGTTTTTGATGTATAAGTTGTCATCATTATCTTGCGTAGCCTCTGTAATTGGCATGCTGGCTTCTCCTTATTTTCTATTGTTCCTTTAAATTAATGCATCATATTCAGTTCGATAGCTGTATCTGCTTAGTACTCAGCTAGTTGAATCCATATCTGATGTAGCAAGAATTGTAGATTTGTGCATGTATTTTCAATGCTTTTATAATCAAAGATGAAGTTCTCTATTCAGGAGTACAACATGTCAGGTGTTTAAGAAATTCTCTGCTGCATCAGTAGAAGTGTGTTTTAACCAATTTTGGCTCCTTTTTTAAAAAAAGCTCCCAAGTCCATAGCACCAGGGCTGGAAGGATTCTTCTGGCTAGACAATGGAAACATGGCAATTGAAGTTGCTTCAGTCTAGAATATCCAACCTCCTTTAAGCATCCAAGAGTAGGAAAATAAAAATAAATAGAATGATAATGACAAAAAGAATAAGACTTACCTGTCACAGACCATTTAAGTTGGAATGAGGATGATTTTAGTATTTCTTGGTACACCTACAAATCTGCTGTTCAGAGCTTCTTGTGTACATGCAATACACTGACTAAATTCTGGCACCATACTTATGCTAGAAATATTTGACACCCCTTTAACTTCTGAATTTATATTTTGGAATCGAAGTCTAAACTAGCAACAAGACTACAATGCCACAATTCCAACCAAGTTTGGGTTGTCTACATGAATCCTCATTGACCATGTCGCTCCATTTAAACCCTCTCAGGCAGTTCTCCTAAACTCTGCAAAAGTTATATTGGATAGTTGTCAGTCTTTAATAGGCAAGTAACTGACCTTAGTATTCAGTTAAGTTTTTGAATCATTTGTGGCAGGGAGGGAGAAAGATTGTGATGGTGATTTATTTAGATTCTCTTTAGCAAAATACGGTAAAAGCTTTTTATAGATGCACAGTAAACAATTCTCATTTTTGTTTTCTGTAACATTTCATGTTGGCCAAGTCTCAGATTCTGGTCTGTGGTATTATATTGTCATTAAGGTTGAACTCCTGAATAGTCGCCCATTGATAAGGAGCCTAATGTGGTGTCGTACTGTGCTGGACATGATTAATGTGACTAGCACCTTTTCCTGTACATACTTAGCAGCTTTTTTGCTGCTGATTATAAAATAGCACTTTTTTACTTTAACCTAATCAACAAATTAAAAGATGTTACTCTGGTCATTTCTCTTTCTGTTCTCCACTTGGTGTTCATGCCTGTTAGTTGCTTGAAGATATATAGTTCTTTGTTACTATTGTTGTACTTATCATCTGCTTAAATGACATCAACCTAAAATACTAGGGATGAAGCCATACTTACTTCTCATGCACCTGGAAACTGGTAGGTATATATATCCACTCAATTGCATGTCATGTTATTGATATCTTTATTCCCTTCATTAGCCTTCATACTCTGACAAAACACGAAGCCTTAAGGAAGTGTTGGAATTATGCTTTCTAGTTTCTTAGAAGGGCTACTTCCCTAAAAAAACCTATTTGAGCAGAGCCTTATTTGTCTCTCCTTGCTAAAAATTAAAAAGCAAAACATGCTGCTCTTGACAGTGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCTGTAAGTGTTTGTCAATTATGATCACTTCCCTTTTATTTATTTATTTATTTATTTATTTTATTTGTTGTGATGTGCGTCACTCAAGCCGAAGTTCTTTCAGAAACTGTCTCTCTACTTCCACAAGGTAGCGATAAGTCTGTGTACGCTCTACCCTTCCCGGACCCCACTTATGGGACTACACTGGGTTATTGCTTATTCATTTTATTAAATACTAACAGTTTGGTCTTAAAAGCTGTTGTGACAATTAAGAATTCTTTTGGACGCGTCAATTTCTGCAAGATAACCAATATGAATGAGAATGTGGATATACTAAAAGATAAACTAAAGTTCCCTTTTTCTTTGGAAAAGAAAGCAGCTAAGTTGTCCCTACATTTGTATTGTTCTCCTAAATAGCATTCAGATCTTCAGTTGCTTTTTATAGTTTATAATATCCATTTCCTTGATTTCCTTTCTTGGGCATAGTTCTTTTGGTGCTTTTGGTCTCCTCTTCCATTCTCTCTTTGCTCCATTGTGGAACACTAAAGTGAATTGTTCATTGTCTTGAAAGTGAATCCTCTAGCCTTTCTCCTCCCGACCATTTATGCTTGTTTACGCGGCCCCATTAGGTATGTTTGCGTACCACAGTAACCAACTTGAACAAGGGTGTGTTCGGTTTGAAGGAAAATGTTCTCTAGGAAAATAAGTGGGGTTCCTACTAATATTTCTTGTGTTAAGTAAGTAAGCAAAAAATATTATCCTAAATGCCTTTGTATATAACTAAGACAAATACTATGGGAGGTGGGGTGAGGAGGTATGGGTGTGGGATGGTGGGAATGAGGGCTATGGGGTGGGAGTGAAGATGACGTGCATTTGGAGTGTTGGGAGGAAACAATCAATGTGGAATGTCAGTAGTAGAGCTTGTTTTTCCTTCTTCCATTAGGGAGCTCACTTTTCTCATTTTTATGGAGCTGCTTTTCCTGGAGAAAATGTATCCCCAAATATTTGACAGCCGAACATGGGAAAATTGGAAAATATTTTTCGAGTGTAGTGCTAAAATGCCTCCATATATTTCGTTTCTTGTTTTTTTTTAGAAGGTAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGAAATACTTGCATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAGGTCATAAGAACTCTAATATACTAGGAATATCCTCTGCATCTTGAAGATATTCATGTTTACACCAAAAAAAGAAAAGAACCAGGAGAGCAGCTCTTGTTTTTAAAACATCTTTGGTTCCTCTCCATCCATATAGACCACCAAATGCAGGCCGGGACAATCTTCCATCTCTCCCTGTGTCCTGACTGATTCCCATCTCTGTTCCAGCAAGCTAAAGCTTCTTTGATGTTCCTTGGCATAGTCAACTGATGCCCCTTAAATTGATGAAAATGTGCCGCAACTTCGCAGTCTCTCTACAATGTAGGAAGAGATTATTTATTATCTCGACCTCACATTCAAAAGTCAAAACCAACACCTGGAACAGATTTGCTTACCTCTTTTGATGAGGTTGTGTTGAGTGAGTGCAGCCTGATTGGCCAACAGCCAAGTGAAACAAGCTATCTTGAATGGTATCTTCACTTTCCAGTCGTTAGTTAGTTTTTTCTAATGATAAAATCATATAATTTGCATTGTGGTTGAATTGCCTATGAAAGAGGGAGAACTTGGAGCATGTGACATATATTAGGAATCTGTAACTTTTGACTTTTGGCTTATTTTGTTCTTTGGCTTAAAAGCACTTCTTATCTTACCCAAACACTACAAAAGTGCTTAAAACTATTTGGCGTAAAAGCACCTAAAAATAAGCCAATCCAAACAGGATCTTACTATTGTATTCATTGAAATACGTGTTTTTTATTTGCTTCGTCGTTAAGTCACGCCATATATTTCCTGTTGGTCCTTGTAGATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAGGTACTTCCTTTCAGCTTATGTCAATAAATAGATAAACACATCTTAGATGTACATGGGGACTGTGCCCTTGTTGTCCTGTCCACACCTTCTTGGTGCATCGCCCTTTACATGAATAAAGGTTTACTCTCTCAAAAGAAAGATATAACACATTGTAGGCTGGAGTACTGTTTAACCGACACTTGGTGCCTTTCTTTTAGGGTAGGTTACAGAATTTTAGTCCTCTTTTTATAAAACTAACCATGGCAATTTACCAACATCAACTGAATGTTGAATTCACGTTTGTCTAGAATGTCTGCTGGAAATGTGTGCATTCATAAAGTAAGAGTTAATGTGGATACTGGAGTATCTCTTAACTCTTCTTTGTCATATTGTTTTAGCAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGG</genome_strand>
        <mrna_strand>CCGATA-AGCGTTCATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCATGCCATGTATCCAACACTGCTTCCTGGAGCTTCCGGTATGCAGCCAATCCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTGCCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCTAGTGTTCCAGACAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................GAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGACGTAAATAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354137" ref_strand="+" ref_description="SGN-E354137 [cTOS-16-H10]">
      <seq>gaaggcaaggaaatgacaatgttgcagctggagagggacaacctggaggtgaaaatgagaatctactaggtaacgatgtaaatagggtaggcgagaatgagcaggcagtggaacccggagctgctgacgctggcaaccgttggtggggtatcgcaaaggagatccaaatgattgtctttggcttcataacttcccttcttccaggttttcacaacattgactagattgtacagatcaagtagcagttgcagatagcaaagagggataaagagaatttttcttttgctaccatgttgttttgagaggacatcaaatgtataacttaaagatagttttctcttctatttggtcataacatagatcatcatagttttctcttctatttggtcataacatagatctaaatgatgttgttgttcttaatatgattggcgaggttgtgtttaaatagtgaaaaatagttgcttaatcctctacttatgtttataacaacttgtggtattcgatttggtattacaaaagtttggttaactttggtatggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="71815" stop="73342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72115" g_stop="72147" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72148" i_stop="72527" i_length="380">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72528" g_stop="73047" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="553" r_length="520" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E354137" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72115" e_stop="72147"/>
          <exon e_start="72528" e_stop="73047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAAGGAAATGACAATGTTGCAGCTGGAGGTACTTCCTTTCAGCTTATGTCAATAAATAGATAAACACATCTTAGATGTACATGGGGACTGTGCCCTTGTTGTCCTGTCCACACCTTCTTGGTGCATCGCCCTTTACATGAATAAAGGTTTACTCTCTCAAAAGAAAGATATAACACATTGTAGGCTGGAGTACTGTTTAACCGACACTTGGTGCCTTTCTTTTAGGGTAGGTTACAGAATTTTAGTCCTCTTTTTATAAAACTAACCATGGCAATTTACCAACATCAACTGAATGTTGAATTCACGTTTGTCTAGAATGTCTGCTGGAAATGTGTGCATTCATAAAGTAAGAGTTAATGTGGATACTGGAGTATCTCTTAACTCTTCTTTGTCATATTGTTTTAGCAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGGCGAGAATGAGCAGGCAGTGGAACCCGGAGCTGCTGACGCTGGCAACCGTTGGTGGGGTATCGCAAAGGAGATCCAAATGATTGTCTTTGGCTTCATAACTTCCCTTCTTCCAGGTTTTCACAACATTGACTAGATTGTACAGATCAAGTAGCAGTTGCAGATAGCAAAGAGGGATAAAGAGAATTTTTCTTTTGCTACCATGTTGTTTTGAGAGGACATCAAATGTATAACTTAAAGATAGTTTTCTCTTCTATTTGGTCATAACATAGATCATCATAGTTTTCTCTTCTATTTGGTCATAACATAGATCTAAATGATGTTGTTGTTCTTAATATGATTGGCGAGGTTGTGTTTAAATAGTGAAAAATAGTTGCTTAATCCTCTACTTATGTTTATAACAACTTGTGGTATTCGATTTGGTATTACAAAAGTTTGGTTAACTTTGGTATGGTAAAAATGTTT</genome_strand>
        <mrna_strand>GAAGGCAAGGAAATGACAATGTTGCAGCTGGAG............................................................................................................................................................................................................................................................................................................................................................................................AGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGGCGAGAATGAGCAGGCAGTGGAACCCGGAGCTGCTGACGCTGGCAACCGTTGGTGGGGTATCGCAAAGGAGATCCAAATGATTGTCTTTGGCTTCATAACTTCCCTTCTTCCAGGTTTTCACAACATTGACTAGATTGTACAGATCAAGTAGCAGTTGCAGATAGCAAAGAGGGATAAAGAGAATTTTTCTTTTGCTACCATGTTGTTTTGAGAGGACATCAAATGTATAACTTAAAGATAGTTTTCTCTTCTATTTGGTCATAACATAGATCATCATAGTTTTCTCTTCTATTTGGTCATAACATAGATCTAAATGATGTTGTTGTTCTTAATATGATTGGCGAGGTTGTGTTTAAATAGTGAAAAATAGTTGCTTAATCCTCTACTTATGTTTATAACAACTTGTGGTATTCGATTTGGTATTACAAAAGTTTGGTTAACTTTGGTATGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732904" ref_strand="+" ref_description="SGN-E732904 [LB03BG12]">
      <seq>cgcctacacacacatcagaggagcaaaatcttctctttcaagcagtagccatggcgaaacgtttgattccaacaattaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttctccctgagaagtctgctaagctgaattctgggaaagtggtggctgttgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggaggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcgttagttgaataactgttcttttagtattgtgcaattgaggagactggggctaacacattatgttttatggcaaatgccaatggtgttcaattaaaaaatgatgacactattttctacctttagcttctgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78874" stop="76525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78576" g_stop="78422" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="295" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76807" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="594" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E732904" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78576" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACACACACATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCTGAATCCAGCTCATGGTAAAGG</genome_strand>
        <mrna_strand>CGCCTACACACACATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCTGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746822" ref_strand="+" ref_description="SGN-E746822 [GI|47104460]">
      <seq>catcagaggagcaaaatcttctctttcaagcagtagccatggcgaaacgtttgattccaacaattaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttctccctgagaagtctgctaagctgaattctgggaaagtggtggctgttgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggaggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcgttagttgaataactgttcttttagtattgtgcaattgaggagactggggctaacacattatgttttatggcaaatgccaatggtgttcaattaaaaaatgatgacactattttctacctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78864" stop="76534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78564" g_stop="78422" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="283" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76820" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="569" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E746822" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78564" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCTGAATCCAG</genome_strand>
        <mrna_strand>CATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310199" ref_strand="+" ref_description="SGN-E310199 [cLEZ-8-F2]">
      <seq>atcagaggagcaaaatcttctctttcaagcagtagccatggcgaaacgtttgattccaacaattaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttctccctgagaagtctgctaagctgaattctgggaaagtggtggctgttgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggaggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcgttagttgaataactgttcttttagtattgtgcaattgaggagactggggctaacacattatgttttatggcaaatgccaatggtgttcaattaaaaaatgatgacactattttctacctttnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78863" stop="76535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78563" g_stop="78422" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="282" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76823" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="565" r_length="283" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E310199" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78563" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCTGAATC</genome_strand>
        <mrna_strand>ATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTNAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339562" ref_strand="+" ref_description="SGN-E339562 [cTOE-16-K20]">
      <seq>tcaatctctcttcttcttccccacacacacatcagaggagcaaaatcttctctttcaagcagtagccatggcgaaacgtttgattccaacaattaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttctccctgagaagtctgctaagctgaattctgggaaagtggtggctgttgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggaggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcgttagttgaataactgttcttttagtattgtgcaattgaggagactggggctaacacattatgttttatggcaaatgccaatggtgttcaattaaaaaatgatgacactattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78893" stop="76540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78593" g_stop="78422" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="312" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76828" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="590" r_length="278" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E339562" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78593" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCTCTTCTTCTTCCCCACACACACATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCT</genome_strand>
        <mrna_strand>TCAATCTCTCTTCTTCTTCCCCACACACACATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696150" ref_strand="+" ref_description="SGN-E696150 [LH_Ea08G04](-)">
      <seq>aatcttctctttcaagcagtagccatggcgaaacgtttgattccaacacttaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttcttcctgagaagtctgctaagctgaattctgggaaagtggtggctattgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggggggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcattagttgaataactgttatgttagtattgtgcaattgaggagactgtggctaacccaaaaggttttatggcaaatgccaatggtgttcaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78850" stop="76558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78550" g_stop="78422" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="269" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76853" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="523" r_length="254" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E696150" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78550" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAA-GGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATG</genome_strand>
        <mrna_strand>AATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACACTTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTTCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTATTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGGGGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCATTAGTTGAATAACTGTTATGTTAGTATTGTGCAATTGAGGAGACTGTGGCTAACCCAAAAGGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692310" ref_strand="+" ref_description="SGN-E692310 [LH_Ea08G04]">
      <seq>tatcttctctttcagcagtagccatggcgaaacgtttcattccaacacttaacagggttttgattgagaaaatcacagctcctgctaaaacaagtgccggtattcttcttcctgagaagtctgctaagctgaattctgggaaagtggtggctattgggccaggacttcatgacaagacagggaacttaatccctactgctgtcaaggaaggtgacaccgtcttgttgcccgagtacggtggtactcaagtcaagttgggggagaaagagtatcatttgtaccgggatgaagacattttggggacactgcacgactgagcatctataacgtttgagttttcattcacactgttgaggtttatttaaggggggttggggaggttaatttcaagaatgtttttggtttaagcactcgaatcattagttgaataactgttcttttagtattgtgcaattgaggagactgtggctaacccattatgttttatggcaaatgccaatggtgttcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78849" stop="76558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78550" g_stop="78422" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77195" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="268" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77105" g_stop="76854" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="521" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E692310" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78550" e_stop="78422"/>
          <exon e_start="77334" e_stop="77195"/>
          <exon e_start="77105" e_stop="76854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGAGTGAGTGCACTTTGTTATCTGTCCTTGTATCGCTCTAAAAGCTCAAAGCTTTATTCATTTTCTAAACATTCTTGATGATCTTATGGCAGGTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAA-GGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGAT</genome_strand>
        <mrna_strand>TATCTTCTCTTTC-AGCAGTAGCCATGGCGAAACGTTTCATTCCAACACTTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTTCCTGAGAAGTCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCTGGGAAAGTGGTGGCTATTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA.........................................................................................GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGGGGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCATTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGTGGCTAACCCATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267247" ref_strand="+" ref_description="SGN-E267247 [cLEI-4-J23]">
      <seq>aaaaagcataaatcttcagtagccatggcgaaacgtttgatcctaacacttaacagggttttgatcgagaaaattacagctcctgctaaaacaagtgctggtattcttctccctgagaattcatctaaactgaattcacggaaagctgtggctgttggaccaggacttcatgacaggacagggaacttgatacctactgctgtcaaggaaggtgacaccgtcttgttgcctgcgtacggtggtactcaagtcaagatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="-" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78834" stop="76902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78534" g_stop="78422" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="129" r_length="113" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77334" g_stop="77202" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="262" r_length="133" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="-" ref_id="SGN-E267247" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78534" e_stop="78422"/>
          <exon e_start="77334" e_stop="77202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAGGTCAGTAACTTAGAAAACTGTAATTTGTTGAATGTTCACCTGTCTTGTTGTTGCTTGGTTACATTAGGTAGATTAAGTGTGAAATTTAGACAAGATTTTTACACCCAATTGAAACTGAATTGAAAAATCTCTTGGAACACTGATTATGATCTCCAATGGAGAGGTATTGCCAGCTTGAAACATTGTCTGATCCCAAATTGAATTAATTAACTCTTTTTCTTCCCTAAACACAGAGATTTTTGGGTTTCTCATAGGATTTTTTTTCCCGATGGGATCTAGGTGAAGGTTTGAGGCTCTTAAAGAAGTTTAGAGTGAGGTGAGAGAGATAAAGTATCCGAATGAATTGTGGTTACTAAGCCGAGTTCAGAAATCAACTATTTTGGTTTATTCTAAGTGCTAAATTTTAGAGTTTGTTGAGCATTTGACTGATGTGGATCCATCTTAAGCTGAACATATATTAATTTGTCTTTGATTGAGGCACTTTTGGTTGTTTTATTGTTTTATTATCTTGGATATGCATTCCAATTTTAGCTGCTATTCAAGCTGGTCTTGTGAATTTAGAGAACATATAGTTTGTGGAGATTCTGTTAGACTACAAGTAGTTTGAGAAACCTCTACGAAGAAGTATTTGGAACTCCTTTGGATATATCCAGCAACATTATTTGTTTATTCATTTGATAGGCCGACAAAATCATGTAGTTTTGAAAGACTCCTCTTTTCTCAAGTATCAGAATGAGATGAGTTCGAGTTGGACAGAAAAAGATTGAAGTGTTCAAATTTCTGAGCTCAGAACTCAAAGTATTGAGATAGGGATTATTTTGGGTATTGCAAGTGCTAAATTTTGGAGGACCTGTAGAATTTGTTGAGCAATTTGGCTGATGTTGAATATTTACATATATGATTTTAACTTGTGTTTGATTGAGTTGTCTTTGAGGTGTTTTGGTGTTTGTATATTCAAGGTCGGTTGAGACTTAGTTGATTGGTTGTTGTTAGCGTTGTATTATGTTGGATATGTAACCCAATTTAGCTAAGATTTTGATCGTTTGGTGTTTGTGTTTTAATCAAGTCAGTCTTGTGAATTTTTCAGCTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGG</genome_strand>
        <mrna_strand>CAGTAGCCATGGCGAAACGTTTGATCCTAACACTTAACAGGGTTTTGATCGAGAAAATTACAGCTCCTGCTAAAACAAGTGCTGGTATTCTTCTCCCTGAGAATTCATCTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATTCACGGAAAGCTGTGGCTGTTGGACCAGGACTTCATGACAGGACAGGGAACTTGATACCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCTGCGTACGGTGGTACTCAAGTCAAGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379807" ref_strand="+" ref_description="SGN-E379807 [TUS-3-P13]">
      <seq>tcctcatcgcgtctctcccccacgctctctcactctctcctccgcgacctctctcatcgcgtctctccccacgctcttctcccttccaccctcctcttcgcgtgaacaagacggaatggcggagacccacaccctgccgctgtcgagcaggtctgcaacacgcaagtcgtcactgtcgtcctcgcaagcacgcaatgttgaccatgtgggttttgacccaaaagggatttgattttcgaaaaaagaggggttctgccaagcctcgaataaaacccaaaatttctccctctatataaacccttccgtccttaagaaaaagggggattttgttcaaaatttcagagaagtagaacttggtttggaatttcgagcgaaattttaattggaactttgtcgaaaacttcgtttgttcgtctgttgttggaattttagtcgaaagattattggaaaggttttgaaggaaactttcgagttctttctttattttagaagagtagtcggtagttgttctcaaccggaaagattttcttttgttgtgtgcgttccactatcggtttcgtaagaacagaagagagggagagattcacgtagctcaggagactgaagtcacgattctgtcccctttgcttgtcgggtcgttttcaaaacagtttggagctcatttcggtcgtggaagctcgtccctgctctggtcctcgtctcagcatggtggtttcatcatgaagtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81323" stop="82651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81623" g_stop="82351" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E379807" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81623" e_stop="82351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTGAAGTCACGATTCTGTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAGTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGTTCCTCGTCTCAGCATGTTGTTTCAATCATGAAGTCGC</genome_strand>
        <mrna_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTGAAGTCACGATTCTGTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAGTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGGTCCTCGTCTCAGCATGGTGGTTTCATCATGAAGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376637" ref_strand="+" ref_description="SGN-E376637 [TUS-18-E20]">
      <seq>tcctcatcgcgtctctcccccacgctctctcactctctcctccgcgacctctctcatcgcgtctctccccacgctcttctcccttccaccctcctcttcgcgtgaacaagacggaatggcggagacccacaccctgccgctgtcgagcaggtctgcaacacgcaagtcgtcactgtcgtcctcgcaagcacgcaatgttgaccatgtgggttttgacccaaaagggatttgattttcgaaaaaagaggggttctgccaagcctcgaataaaacccaaaatttctccctctatataaacccttccgtccttaagaaaaagggggattttgttcaaaatttcagagaagtagaacttggtttggaatttcgagcgaaattttaattggaactttgtcgaaaacttcgtttgttcgtctgttgttggaattttagtcgaaagattattggaaaggttttgaaggaaactttcgagttctttctttattatagaagagtagtcggtagttgttctcaaccggaaagattttcttttgttgtgtgcgttccactatcggtttcgtaagaacagaagagagggagagattcacgtagctcaggagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81323" stop="82525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81623" g_stop="82225" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E376637" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81623" e_stop="82225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTG</genome_strand>
        <mrna_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTATAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210039" ref_strand="+" ref_description="SGN-E210039 [cLEC-40-E11]">
      <seq>tcctcatcgcgtctctcccccacgctctctcactctctcctccgcgacctctctcatcgcgtctctccccacgctcttctcccttccaccctcctcttcgcgtgaacaagacggaatggcggagacccacaccctgccgctgtcgagcaggtctgcaacacgcaagtcgtcactgtcgtcctcgcaagcacgcaatgttgaccatgtgggttttgacccaaaagggatttgattttcgaaaaaagaggggttctgccaagcctcgaataaaacccaaaatttctccctctatataaacccttccgtccttaagaaaaagggggattttgttcaaaatttcagagaagtagaacttggtttggaatttcgagcgaaattctaattggaactttgccgaaaacttcgtttgttcgtctgttgttggaattttagtcgaaagattattggaaaggttttgaaggaaactttcgagttctttctttattttagaagagtagtccgtagttgttctcaaccggaaagattttcttttggtgcgtgcgttccactatcggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81323" stop="82479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81623" g_stop="82179" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E210039" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81623" e_stop="82179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTT</genome_strand>
        <mrna_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTCTAATTGGAACTTTGCCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCCGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGGTGCGTGCGTTCCACTATCGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214064" ref_strand="+" ref_description="SGN-E214064 [cLEC-80-M17]">
      <seq>tcctcatcgcgtctctcccccacgctctctcactctctcctccgcgacctctctcatcgcgtctctccccacgctcttctcccttccaccctcctcttcgcgtgaacaagacggaatggcggagacccacaccctgccgctgtcgagcaggtctgcaacacgcaagtcgtcactgtcgtcctcgcaagcacgcaatgttgaccatgtgggttttgacccaaaagggatttgattttcgaaaaaagaggggttctgccaagcctcgaataaaacccaaaatttctccctctatataaacccttccgtccttaagaaaaagggggattttgttcaaaatttcagagaagtagaacttggtttggaatttcgagcgaaattttaattggaactttgtcgaaaacttcgtttgttcgtctgttgttggaattttagtcgaaagattattggaaaggttttgaaggaaactttcgagttctttctttattttagaagagtagtcggtagttgttctcaaccggaaagattttcttttgttgtgtgcgttccactatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81323" stop="82475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81623" g_stop="82175" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E214064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81623" e_stop="82175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCG</genome_strand>
        <mrna_strand>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379301" ref_strand="+" ref_description="SGN-E379301 [TUS-3-P13](-)">
      <seq>ttagaagagtagtcggtagttgttctcaaccggaaagattttcttttgttgtgtgcgttccactatcggtttcgtaagaacagaagagagggagagattcacgtagctcaggagactgaagtcacgattctgtcccctttgcttgtcgggtcgttttcaaaacagtttggagctcatttcggtcgtggaagctcgtccctgctctgttcctcgtctcagcatgttgtttcaatcatgaagtcgcttctgattattacgttatccatcgtttttccttctttcttcgtgttcatggatgctggttcgtttgttattgcattcgttatgatattcttttgtttcatgacatgtaaatgatttttctcttgtctggctgtttttgggattttgtgagtgatgatagttcttcgatagtagttcggaatagttgtaatcgatgtggattttcttgtttgtttagctgtttatgggtaggtcattgtttctacattgaatgaccgatatatggagattttcatcgtcggcgtttcgcaggaatgcaggcctcgccttttcgcttaatctctaatatagtgaaatttggatttcatctgtttgtctatcaagctgacaaataggaatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81808" stop="83032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82108" g_stop="82732" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E379301" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82108" e_stop="82732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTGAAGTCACGATTCTGTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAGTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGTTCCTCGTCTCAGCATGTTGTTTCAATCATGAAGTCGCTTCTGATTATTACGTTATCCATCGTTTTTCCTTCTTTCTTCGTGTTCATGGATGCTGGTTCGTTTGTTATTGCATTCGTTATGATATTCTTTTGTTTCATGACATGTAAATGATTTTTCTCTTGTCTGGCTGTTTTTGGGATTTTGTGAGTGATGATAGTTCTTCGATAGTAGTTCGGAATAGTTGTAATCGATGTGGATTTTCTTGTTTGTTTAGCTGTTTATGGGTAGGTCATTGTTTCTACATTGAATGACCGATATATGGAGATTTTCATTGTCGGCGTTTCGCAGGAATGCAGGCCTCGCCTTTTCGCTTAATCTCTAATATAGTGAAATTTGGATTTCATCTGTTTGTCTATCAAGCTTTCAAATAGGAATCCTT</genome_strand>
        <mrna_strand>TTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTGAAGTCACGATTCTGTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAGTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGTTCCTCGTCTCAGCATGTTGTTTCAATCATGAAGTCGCTTCTGATTATTACGTTATCCATCGTTTTTCCTTCTTTCTTCGTGTTCATGGATGCTGGTTCGTTTGTTATTGCATTCGTTATGATATTCTTTTGTTTCATGACATGTAAATGATTTTTCTCTTGTCTGGCTGTTTTTGGGATTTTGTGAGTGATGATAGTTCTTCGATAGTAGTTCGGAATAGTTGTAATCGATGTGGATTTTCTTGTTTGTTTAGCTGTTTATGGGTAGGTCATTGTTTCTACATTGAATGACCGATATATGGAGATTTTCATCGTCGGCGTTTCGCAGGAATGCAGGCCTCGCCTTTTCGCTTAATCTCTAATATAGTGAAATTTGGATTTCATCTGTTTGTCTATCAAGCTGACAAATAGGAATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376636" ref_strand="+" ref_description="SGN-E376636 [TUS-18-E20](-)">
      <seq>gtcccctttgcttgtcgggtggttttcaaaacagttttggagctcatttcggtcgtggaagctcgtccctgctttgttcctcgtctcagcatgttgtttcaatcataaaatcgcttttgattattacgttatccatcgtttttccttcttttttcgtgttcatggatgctggttcgtttgttattgcattcgttataatatttttttgtttcatgacatgtaaatgatttttttcttgtctggctgtttttgggattttgtgagtgatgatagtttttcaatagtagttcgaaatagttgtaatcaatgtggatttttttgtttgtttaactgtttatgggtaggtcattgtttttacattgaatgaccgatatatggaaattttcattgtcggcgtttcgcaggaatgcaggcctccccttttcgcttaatctttaatatagtgaaatttggatttcatctgtttgtttatcaagctttcaaataggaatcccttcagcatgtttcgtcgttgtatcataatagtctgataaggaaagatatgtttgttttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0163M22-zHLVW/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0163M22.1" temp_strand="+" temp_description="C07HBa0163M22.1  AC236763.1 htgs_phase:2 submitted_to_sgn_as:gi|238909033|gb|AC236763.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0163M22, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81939" stop="83092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82239" g_stop="82789" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="572"/>
      <MATCH_line gen_id="C07HBa0163M22.1" gen_strand="+" ref_id="SGN-E376636" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0163M22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82239" e_stop="82789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAG-TTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGTTCCTCGTCTCAGCATGTTGTTTCAATCATGAAGTCGCTTCTGATTATTACGTTATCCATCGTTTTTCCTTCTTTCTTCGTGTTCATGGATGCTGGTTCGTTTGTTATTGCATTCGTTATGATATTCTTTTGTTTCATGACATGTAAATGATTTTTCTCTTGTCTGGCTGTTTTTGGGATTTTGTGAGTGATGATAGTTCTTCGATAGTAGTTCGGAATAGTTGTAATCGATGTGGATTTTCTTGTTTGTTTAGCTGTTTATGGGTAGGTCATTGTTTCTACATTGAATGACCGATATATGGAGATTTTCATTGTCGGCGTTTCGCAGGAATGCAGGCCTCGCCTTTTCGCTTAATCTCTAATATAGTGAAATTTGGATTTCATCTGTTTGTCTATCAAGCTTTCAAATAGGAATCCTTTCAGCATGTTTCGTCGTTGTATCATAATAGTCTGATAAGG-AAGATATGTTTGTTCTT</genome_strand>
        <mrna_strand>GTCCCCTTTGCTTGTCGGGTGGTTTTCAAAACAGTTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTTTGTTCCTCGTCTCAGCATGTTGTTTCAATCATAAAATCGCTTTTGATTATTACGTTATCCATCGTTTTTCCTTCTTTTTTCGTGTTCATGGATGCTGGTTCGTTTGTTATTGCATTCGTTATAATATTTTTTTGTTTCATGACATGTAAATGATTTTTTTCTTGTCTGGCTGTTTTTGGGATTTTGTGAGTGATGATAGTTTTTCAATAGTAGTTCGAAATAGTTGTAATCAATGTGGATTTTTTTGTTTGTTTAACTGTTTATGGGTAGGTCATTGTTTTTACATTGAATGACCGATATATGGAAATTTTCATTGTCGGCGTTTCGCAGGAATGCAGGCCTCCCCTTTTCGCTTAATCTTTAATATAGTGAAATTTGGATTTCATCTGTTTGTTTATCAAGCTTTCAAATAGGAATCCCTTCAGCATGTTTCGTCGTTGTATCATAATAGTCTGATAAGGAAAGATATGTTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>137</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="185" PGL_stop="2240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="185" e_stop="252"/>
            <exon e_start="784" e_stop="932"/>
            <exon e_start="1023" e_stop="1079"/>
            <exon e_start="1339" e_stop="1377"/>
            <exon e_start="1466" e_stop="1848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="185" e_stop="252" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.995">
            <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="784" e_stop="932" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1023" e_stop="1079" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.923">
            <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1377" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1466" e_stop="1848" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554397" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1466" stop="1590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1466" stop="1590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
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              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="190" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="195" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="219" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="221" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="226" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="231" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="785" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="787" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="788" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="831" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="844" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="853" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="886" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="900" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="903" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="916" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1025" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1026" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1028" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1352" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1361" stop="1377"/>
              <exon start="1466" stop="1780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1364" stop="1377"/>
              <exon start="1466" stop="1761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1505" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG : GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTCATGGTATTTGTTATTCTACACAA</gDNA_template>
            <first_frame> M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  G  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  V  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  A  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  N  H  A  S  *  S  F  C  *  I  P  L  L  S  N  V  L  K  S  D  F  T  L  A  F  E  C  S  I  S  C  L  L  *  P  H  L  K  R  I  L  K  C  F  *  *  *  A  I  F  P  F  K  D  L  S  S  I  L  A  M  P  I  F  Q  C  H  G  I  C  Y  S  T  Q </first_frame>
            <second_frame>  *  M  *  K  S  C  K  R  W  P  V  R  S  E  P  V  E  R  V  P  *  E   : E  R  R  R  P  Y  T  R  Q  L  Q  L  T  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  A  F  L  P  L  K  K  S  T  F  S  R  R  M  L  L  S  N  S  L  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  L  L  V  V  L  P  R  Q  R  :  N  C  R  I  F  F  L  R  S  F  T  S  W  :  A  L  I  I  W  R  I  *  R  S  W  P  S  S  S  R  S  R  H  L  V  L  P  M  Q  L  Q  V  L  L  Q  H  R  K  T  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  L  P  R  R  T  T  L  L  K  V  F  V  E  F  P  Y  F  P  M  F  *  N  Q  I  L  P  *  L  L  S  V  L  F  H  V  Y  C  D  H  I  S  K  E  F  L  N  A  F  N  S  K  L  F  S  P  S  K  T  Y  L  L  F  *  Q  C  L  F  F  N  V  M  V  F  V  I  L  H   </second_frame>
            <third_frame>   E  C  R  K  V  A  K  D  G  R  F  G  Q  N  R  W  K  G  Y  H  E  K  :  K  E  E  G  R  T  Q  D  N  Y  N  *  R  Q  K  T  T  E  H  L  E  K  N  R  C  Q  W  H  S  C  H  *  R  S  Q  H  F  Q  G  G  C  C  Y  P  I  R  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  C  *  W  Y  S  P  D  K  E :   I  A  G  Y  S  S  S  D  H  S  P  V  G :   P  *  *  F  G  E  F  E  E  V  G  R  A  V  P  E  A  G  T  W  C  C  R  C  S  C  R  C  C  C  S  T  G  R  R  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  C  R  G  E  P  R  F  L  K  F  L  L  N  S  L  T  F  Q  C  S  E  I  R  F  Y  L  S  F  *  V  F  Y  F  M  S  I  V  T  T  S  Q  K  N  S  *  M  L  L  I  V  S  Y  F  P  L  Q  R  L  I  F  Y  F  S  N  A  Y  F  S  M  S  W  Y  L  L  F  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="185" stop="252"/>
                    <exon start="784" stop="932"/>
                    <exon start="1023" stop="1079"/>
                    <exon start="1339" stop="1377"/>
                    <exon start="1466" stop="1641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNGIPAIEEVNIFKEDVVIQFVNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADAAAGAVAAQEDDDDVPELVAGETFEAAAEENHAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="185" e_stop="252"/>
            <exon e_start="784" e_stop="932"/>
            <exon e_start="1023" e_stop="1079"/>
            <exon e_start="1339" e_stop="1377"/>
            <exon e_start="1466" e_stop="1776"/>
            <exon e_start="2216" e_stop="2240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="0.640"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="185" e_stop="252" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.995">
            <gDNA_intron_boundary i_start="253" i_stop="783" i_length="531"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="784" e_stop="932" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1023" e_stop="1079" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.923">
            <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1377" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1466" e_stop="1776" e_length="311"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.798">
            <gDNA_intron_boundary i_start="1777" i_stop="2215" i_length="439"/>
          </intron>
          <exon e_serial="6" e_score="0.640">
            <gDNA_exon_boundary e_start="2216" e_stop="2240" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="190" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="219" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="226" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="231" stop="252"/>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="853" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="916" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1029" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1776"/>
              <exon start="2216" stop="2240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1364" stop="1377"/>
              <exon start="1466" stop="1761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1505" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG : GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTC : ATAATGAAATTATCAAGAAAAAAGA</gDNA_template>
            <first_frame> M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  G  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  V  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  A  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  N  H  A  S  *  S  F  C  *  I  P  L  L  S  N  V  L  K  S  D  F  T  L  A  F  E  C  S  I  S  C  L  L  *  P  H  L  K  R  I  L  K  C  F  *  *  *  A  I  F  :  I  M  K  L  S  R  K  K  </first_frame>
            <second_frame>  *  M  *  K  S  C  K  R  W  P  V  R  S  E  P  V  E  R  V  P  *  E   : E  R  R  R  P  Y  T  R  Q  L  Q  L  T  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  A  F  L  P  L  K  K  S  T  F  S  R  R  M  L  L  S  N  S  L  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  L  L  V  V  L  P  R  Q  R  :  N  C  R  I  F  F  L  R  S  F  T  S  W  :  A  L  I  I  W  R  I  *  R  S  W  P  S  S  S  R  S  R  H  L  V  L  P  M  Q  L  Q  V  L  L  Q  H  R  K  T  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  L  P  R  R  T  T  L  L  K  V  F  V  E  F  P  Y  F  P  M  F  *  N  Q  I  L  P  *  L  L  S  V  L  F  H  V  Y  C  D  H  I  S  K  E  F  L  N  A  F  N  S  K  L  F  S :   *  *  N  Y  Q  E  K  R </second_frame>
            <third_frame>   E  C  R  K  V  A  K  D  G  R  F  G  Q  N  R  W  K  G  Y  H  E  K  :  K  E  E  G  R  T  Q  D  N  Y  N  *  R  Q  K  T  T  E  H  L  E  K  N  R  C  Q  W  H  S  C  H  *  R  S  Q  H  F  Q  G  G  C  C  Y  P  I  R  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  C  *  W  Y  S  P  D  K  E :   I  A  G  Y  S  S  S  D  H  S  P  V  G :   P  *  *  F  G  E  F  E  E  V  G  R  A  V  P  E  A  G  T  W  C  C  R  C  S  C  R  C  C  C  S  T  G  R  R  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  C  R  G  E  P  R  F  L  K  F  L  L  N  S  L  T  F  Q  C  S  E  I  R  F  Y  L  S  F  *  V  F  Y  F  M  S  I  V  T  T  S  Q  K  N  S  *  M  L  L  I  V  S  Y  F   : H  N  E  I  I  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="185" stop="252"/>
                    <exon start="784" stop="932"/>
                    <exon start="1023" stop="1079"/>
                    <exon start="1339" stop="1377"/>
                    <exon start="1466" stop="1641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNGIPAIEEVNIFKEDVVIQFVNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADAAAGAVAAQEDDDDVPELVAGETFEAAAEENHAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="780" e_stop="932"/>
            <exon e_start="1023" e_stop="1079"/>
            <exon e_start="1339" e_stop="1377"/>
            <exon e_start="1466" e_stop="1848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="780" e_stop="932" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="933" i_stop="1022" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1023" e_stop="1079" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.923">
            <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1377" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1466" e_stop="1848" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="780" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266059" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="781" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="781" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="781" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="781" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="781" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="785" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="787" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="788" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="818" stop="932"/>
              <exon start="1023" stop="1064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="831" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="844" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="853" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="886" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="900" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="903" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="916" stop="932"/>
              <exon start="1023" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1025" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1026" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1028" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1352" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1361" stop="1377"/>
              <exon start="1466" stop="1780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1364" stop="1377"/>
              <exon start="1466" stop="1761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1505" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG : GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGCAATGCCTATTTTTCAATGTCATGGTATTTGTTATTCTACACAA</gDNA_template>
            <first_frame> A  E  R  R  R  P  Y  T  R  Q  L  Q  L  T  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  A  F  L  P  L  K  K  S  T  F  S  R  R  M  L  L  S  N  S  L  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  L  L  V  V  L  P  R  Q  R  :  N  C  R  I  F  F  L  R  S  F  T  S  W  :  A  L  I  I  W  R  I  *  R  S  W  P  S  S  S  R  S  R  H  L  V  L  P  M  Q  L  Q  V  L  L  Q  H  R  K  T  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  L  P  R  R  T  T  L  L  K  V  F  V  E  F  P  Y  F  P  M  F  *  N  Q  I  L  P  *  L  L  S  V  L  F  H  V  Y  C  D  H  I  S  K  E  F  L  N  A  F  N  S  K  L  F  S  P  S  K  T  Y  L  L  F  *  Q  C  L  F  F  N  V  M  V  F  V  I  L  H   </first_frame>
            <second_frame>  Q  K  E  E  G  R  T  Q  D  N  Y  N  *  R  Q  K  T  T  E  H  L  E  K  N  R  C  Q  W  H  S  C  H  *  R  S  Q  H  F  Q  G  G  C  C  Y  P  I  R  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  C  *  W  Y  S  P  D  K  E :   I  A  G  Y  S  S  S  D  H  S  P  V  G :   P  *  *  F  G  E  F  E  E  V  G  R  A  V  P  E  A  G  T  W  C  C  R  C  S  C  R  C  C  C  S  T  G  R  R  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  C  R  G  E  P  R  F  L  K  F  L  L  N  S  L  T  F  Q  C  S  E  I  R  F  Y  L  S  F  *  V  F  Y  F  M  S  I  V  T  T  S  Q  K  N  S  *  M  L  L  I  V  S  Y  F  P  L  Q  R  L  I  F  Y  F  S  N  A  Y  F  S  M  S  W  Y  L  L  F  Y  T  </second_frame>
            <third_frame>   R  K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  G  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  V  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  A  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  N  H  A  S  *  S  F  C  *  I  P  L  L  S  N  V  L  K  S  D  F  T  L  A  F  E  C  S  I  S  C  L  L  *  P  H  L  K  R  I  L  K  C  F  *  *  *  A  I  F  P  F  K  D  L  S  S  I  L  A  M  P  I  F  Q  C  H  G  I  C  Y  S  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="782" stop="932"/>
                    <exon start="1023" stop="1079"/>
                    <exon start="1339" stop="1377"/>
                    <exon start="1466" stop="1641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKAVHKTTTTDDKRLQSTLKRIGVNGIPAIEEVNIFKEDVVIQFVNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADAAAGAVAAQEDDDDVPELVAGETFEAAAEENHAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="874" e_stop="932"/>
            <exon e_start="1018" e_stop="1079"/>
            <exon e_start="1339" e_stop="1377"/>
            <exon e_start="1466" e_stop="1792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="874" e_stop="932" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="933" i_stop="1017" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1018" e_stop="1079" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.923">
            <gDNA_intron_boundary i_start="1080" i_stop="1338" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1377" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1378" i_stop="1465" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1466" e_stop="1792" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="874" stop="932"/>
              <exon start="1018" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1025" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1026" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1028" stop="1079"/>
              <exon start="1339" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1352" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1361" stop="1377"/>
              <exon start="1466" stop="1780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="1377"/>
              <exon start="1466" stop="1782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1364" stop="1377"/>
              <exon start="1466" stop="1761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1505" stop="1763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG : TTCAGTTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG : GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTAT</gDNA_template>
            <first_frame> H  *  R  S  Q  H  F  Q  G  G  C  C  Y  P  I  R  *  P  Q  S :   S  V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  A  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  N  H  A  S  *  S  F  C  *  I  P  L  L  S  N  V  L  K  S  D  F  T  L  A  F  E  C  S  I  S  C  L  L  *  P  H  L  K  R  I  L  K  C  F  *  *  *  A  I  F  P  F  K  D  L  </first_frame>
            <second_frame>  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  V  N  P  K   : V  Q  F  K  H  Q  L  L  Q  T  H  G  L  L  V  V  L  P  R  Q  R  :  N  C  R  I  F  F  L  R  S  F  T  S  W  :  A  L  I  I  W  R  I  *  R  S  W  P  S  S  S  R  S  R  H  L  V  L  P  M  Q  L  Q  V  L  L  Q  H  R  K  T  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  L  P  R  R  T  T  L  L  K  V  F  V  E  F  P  Y  F  P  M  F  *  N  Q  I  L  P  *  L  L  S  V  L  F  H  V  Y  C  D  H  I  S  K  E  F  L  N  A  F  N  S  K  L  F  S  P  S  K  T  Y </second_frame>
            <third_frame>   L  K  K  S  T  F  S  R  R  M  L  L  S  N  S  L  T  P  K  :  F  S  S  S  I  N  C  C  K  H  M  G  C  *  W  Y  S  P  D  K  E :   I  A  G  Y  S  S  S  D  H  S  P  V  G :   P  *  *  F  G  E  F  E  E  V  G  R  A  V  P  E  A  G  T  W  C  C  R  C  S  C  R  C  C  C  S  T  G  R  R  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  C  R  G  E  P  R  F  L  K  F  L  L  N  S  L  T  F  Q  C  S  E  I  R  F  Y  L  S  F  *  V  F  Y  F  M  S  I  V  T  T  S  Q  K  N  S  *  M  L  L  I  V  S  Y  F  P  L  Q  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="925" stop="932"/>
                    <exon start="1018" stop="1079"/>
                    <exon start="1339" stop="1377"/>
                    <exon start="1466" stop="1641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQSSVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADAAAGAVAAQEDDDDVPELVAGETFEAAAEENHAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5569" PGL_stop="3949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5569" e_stop="5361"/>
            <exon e_start="4450" e_stop="3949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5569" e_stop="5361" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="5360" i_stop="4451" i_length="910"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4450" e_stop="3949" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5569" stop="5361"/>
              <exon start="4450" stop="3949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACCGTGTCAAGCTACTAGTCCTACAACATCAGTAGGATGTACACCCGAGACTGTGAAGGGTGAACCAGCAGATCATATTTCGTCAAGTGATGCAGAAGAAAATGCAGCCCAGGCACCTAATGAAGAAACATCCAACTTGGTTATCCGTCCTTCCAAGAAAAAGCATGACAAAAAAGCAGTAATAACATCAATAGATAGAGTAGAG : ACACTTGTAGAATCTGGTGATGACGTGAGCCTGAAACTACTGCGAGACAGAGCAAAAAAGCAAAGGAGAAAACTAATTTCCAAGGAGAGGGAAAAGATACAAGAAGCTGAAGCTGAAGCTGAGATGCAGGAGCTATGTAGAATCAAGGACAAAATAGCAAGACTCCAGGACATTTTACGAAGGTTTCCAAATCACAGATGTAGAAGAGCGGACACTTCTAGTTTAGACGAATCATTGATTGTCTTTGTACCTGTTGCACAGTTGCAGGAGAAAAGGTGACTAATCACTTCAACCTTTTTTTTTCCTTCCTAAAGTTGTGTTCCTCCATTTTTCACAAATCAACAAAGACAAACAAGGAGGTTGAATGAGGCATATACAGAAGCAAAATTCTTCTTTTCATGTTATACATGTATAGTTTTCCATCTTTCTTTAAGGACTTGCAACTAAATAGAATGTAAAAGATTGTACAATAGATCAGTTTCAGTTATGTTAATTGGCACAA</gDNA_template>
            <first_frame> Q  N  R  V  K  L  L  V  L  Q  H  Q  *  D  V  H  P  R  L  *  R  V  N  Q  Q  I  I  F  R  Q  V  M  Q  K  K  M  Q  P  R  H  L  M  K  K  H  P  T  W  L  S  V  L  P  R  K  S  M  T  K  K  Q  *  *  H  Q  *  I  E  *  R :   H  L  *  N  L  V  M  T  *  A  *  N  Y  C  E  T  E  Q  K  S  K  G  E  N  *  F  P  R  R  G  K  R  Y  K  K  L  K  L  K  L  R  C  R  S  Y  V  E  S  R  T  K  *  Q  D  S  R  T  F  Y  E  G  F  Q  I  T  D  V  E  E  R  T  L  L  V  *  T  N  H  *  L  S  L  Y  L  L  H  S  C  R  R  K  G  D  *  S  L  Q  P  F  F  F  L  P  K  V  V  F  L  H  F  S  Q  I  N  K  D  K  Q  G  G  *  M  R  H  I  Q  K  Q  N  S  S  F  H  V  I  H  V  *  F  S  I  F  L  *  G  L  A  T  K  *  N  V  K  D  C  T  I  D  Q  F  Q  L  C  *  L  A  Q </first_frame>
            <second_frame>  K  T  V  S  S  Y  *  S  Y  N  I  S  R  M  Y  T  R  D  C  E  G  *  T  S  R  S  Y  F  V  K  *  C  R  R  K  C  S  P  G  T  *  *  R  N  I  Q  L  G  Y  P  S  F  Q  E  K  A  *  Q  K  S  S  N  N  I  N  R  *  S  R   : D  T  C  R  I  W  *  *  R  E  P  E  T  T  A  R  Q  S  K  K  A  K  E  K  T  N  F  Q  G  E  G  K  D  T  R  S  *  S  *  S  *  D  A  G  A  M  *  N  Q  G  Q  N  S  K  T  P  G  H  F  T  K  V  S  K  S  Q  M  *  K  S  G  H  F  *  F  R  R  I  I  D  C  L  C  T  C  C  T  V  A  G  E  K  V  T  N  H  F  N  L  F  F  S  F  L  K  L  C  S  S  I  F  H  K  S  T  K  T  N  K  E  V  E  *  G  I  Y  R  S  K  I  L  L  F  M  L  Y  M  Y  S  F  P  S  F  F  K  D  L  Q  L  N  R  M  *  K  I  V  Q  *  I  S  F  S  Y  V  N  W  H   </second_frame>
            <third_frame>   K  P  C  Q  A  T  S  P  T  T  S  V  G  C  T  P  E  T  V  K  G  E  P  A  D  H  I  S  S  S  D  A  E  E  N  A  A  Q  A  P  N  E  E  T  S  N  L  V  I  R  P  S  K  K  K  H  D  K  K  A  V  I  T  S  I  D  R  V  E  :  T  L  V  E  S  G  D  D  V  S  L  K  L  L  R  D  R  A  K  K  Q  R  R  K  L  I  S  K  E  R  E  K  I  Q  E  A  E  A  E  A  E  M  Q  E  L  C  R  I  K  D  K  I  A  R  L  Q  D  I  L  R  R  F  P  N  H  R  C  R  R  A  D  T  S  S  L  D  E  S  L  I  V  F  V  P  V  A  Q  L  Q  E  K  R  *  L  I  T  S  T  F  F  F  P  S  *  S  C  V  P  P  F  F  T  N  Q  Q  R  Q  T  R  R  L  N  E  A  Y  T  E  A  K  F  F  F  S  C  Y  T  C  I  V  F  H  L  S  L  R  T  C  N  *  I  E  C  K  R  L  Y  N  R  S  V  S  V  M  L  I  G  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5567" stop="5361"/>
                    <exon start="4450" stop="4172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPCQATSPTTSVGCTPETVKGEPADHISSSDAEENAAQAPNEETSNLVIRPSKKKHDKKAVITSIDRVETLVESGDDVSLKLLRDRAKKQRRKLISKEREKIQEAEAEAEMQELCRIKDKIARLQDILRRFPNHRCRRADTSSLDESLIVFVPVAQLQEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25715" PGL_stop="31783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25715" e_stop="26020"/>
            <exon e_start="26109" e_stop="26164"/>
            <exon e_start="26329" e_stop="26383"/>
            <exon e_start="26724" e_stop="26804"/>
            <exon e_start="26882" e_stop="27118"/>
            <exon e_start="31383" e_stop="31783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.638" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25715" e_stop="26020" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26021" i_stop="26108" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26109" e_stop="26164" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26165" i_stop="26328" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26329" e_stop="26383" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26384" i_stop="26723" i_length="340"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26724" e_stop="26804" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.638">
            <gDNA_intron_boundary i_start="26805" i_stop="26881" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26882" e_stop="27118" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.980">
            <gDNA_intron_boundary i_start="27119" i_stop="31382" i_length="4264"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31383" e_stop="31783" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25715" stop="26020"/>
              <exon start="26109" stop="26164"/>
              <exon start="26329" stop="26383"/>
              <exon start="26724" stop="26804"/>
              <exon start="26882" stop="27031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25721" stop="26020"/>
              <exon start="26109" stop="26164"/>
              <exon start="26329" stop="26383"/>
              <exon start="26724" stop="26804"/>
              <exon start="26882" stop="26999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25732" stop="26020"/>
              <exon start="26109" stop="26164"/>
              <exon start="26329" stop="26383"/>
              <exon start="26724" stop="26804"/>
              <exon start="26882" stop="26918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26134" stop="26164"/>
              <exon start="26329" stop="26383"/>
              <exon start="26724" stop="26804"/>
              <exon start="26882" stop="27118"/>
              <exon start="31383" stop="31783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27047" stop="27118"/>
              <exon start="31383" stop="31776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350893" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTGCGTCTCTTCCCCCATTTCAATTTTCTGCAAATTTTTTTGGGTGAAGAGTGATATGGAAAGGGTAACACAGAAAGAGATTGGTAGTAGTAGTACTAGTAGTAGTAGTAGTAATAGGAAACAAATCCCAGATTCAGTGATGGAAGCAGTGAACAGAACCTCAAAAAACATGGACGATTTGAGTAGTAATGTAGACGAATTTCTGTCTCTGTATGGCGCTGGTGTTTTTCCCGATTTGGGTCCTCTACAACAAGCTCAATCTTTGATTTTGCTGGCTAAAGCTACAACAACACTCTTTGCAT : TGAGGCTTAGGTGTAAAGGGATCAACCCAGATGACCGTCCTGTCAAATTAGAGTTT : GAACGTTTGAGCTTGTTCCAAGAGAAATTGCAGGAATTGATGGACTTGAATAAAG : CGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG : AGCAGAGAAAAAGCATGAGAGAAATCAGTAAAGCTGACGGGCCTAGGATTAAGTATCTGGAAAGAGTTGTTCATAAGAAGAGGAAGTATTCCGACCAGCAATCTGTTCGAACTGCTACCCAGGAGTTCCTTGAGAAAGCTGCCCGTGAACTTCTTGGTGAAAACCAGAGTGGTTTTAAGGGACCTTTACAACTGCCAGAGGGTGATGATGAAGACATACCTATGAGCTGATTTTCTG : AGATTCTCTTCTGCTGATGAAGCCATGCAGGTGCGCACCAGATTTTGTGCTGATGAGCTTTTCAAGCATTTTGTTCCAGTTCCAACATATGATGAAGATACTCGGATCATACACAAGCTTTGCAGCAATTGCTACTTTAGCCGCTAATCGTTGATGCAAGTTATAATTTAATAGAGTCTGCTTTCGGTTTTCAGCTATGAATCCAAAGTTGCTCCGTTTTTCTGTAAGGTTTGTTTATTGTAAGAGAAAGCTGGCAGTTACATGTACAATAGTGCAGCAGAAACTAGAAATTATCTTTTTTGTAGTTTCATTTGTTTTCAATAGATCCTGTTGCAGTAGCAGCTAAAAGCTGGGATTTTTTTTATTACACTTTCTATGACAAGATGATTATATGGTCAGTG</gDNA_template>
            <first_frame> L  V  A  S  L  P  P  F  Q  F  S  A  N  F  F  G  *  R  V  I  W  K  G  *  H  R  K  R  L  V  V  V  V  L  V  V  V  V  V  I  G  N  K  S  Q  I  Q  *  W  K  Q  *  T  E  P  Q  K  T  W  T  I  *  V  V  M  *  T  N  F  C  L  C  M  A  L  V  F  F  P  I  W  V  L  Y  N  K  L  N  L  *  F  C  W  L  K  L  Q  Q  H  S  L  H  :  *  G  L  G  V  K  G  S  T  Q  M  T  V  L  S  N  *  S  L :   N  V  *  A  C  S  K  R  N  C  R  N  *  W  T  *  I  K  :  R  H  C  D  H  Q  Q  G  *  I  R  K  V  L  L  D  L  S  S  I  R  C  L  I  L  H  L  :  S  R  E  K  A  *  E  K  S  V  K  L  T  G  L  G  L  S  I  W  K  E  L  F  I  R  R  G  S  I  P  T  S  N  L  F  E  L  L  P  R  S  S  L  R  K  L  P  V  N  F  L  V  K  T  R  V  V  L  R  D  L  Y  N  C  Q  R  V  M  M  K  T  Y  L  *  A  D  F  L  :  R  F  S  S  A  D  E  A  M  Q  V  R  T  R  F  C  A  D  E  L  F  K  H  F  V  P  V  P  T  Y  D  E  D  T  R  I  I  H  K  L  C  S  N  C  Y  F  S  R  *  S  L  M  Q  V  I  I  *  *  S  L  L  S  V  F  S  Y  E  S  K  V  A  P  F  F  C  K  V  C  L  L  *  E  K  A  G  S  Y  M  Y  N  S  A  A  E  T  R  N  Y  L  F  C  S  F  I  C  F  Q  *  I  L  L  Q  *  Q  L  K  A  G  I  F  F  I  T  L  S  M  T  R  *  L  Y  G  Q   </first_frame>
            <second_frame>  L  L  R  L  F  P  H  F  N  F  L  Q  I  F  L  G  E  E  *  Y  G  K  G  N  T  E  R  D  W  *  *  *  Y  *  *  *  *  *  *  *  E  T  N  P  R  F  S  D  G  S  S  E  Q  N  L  K  K  H  G  R  F  E  *  *  C  R  R  I  S  V  S  V  W  R  W  C  F  S  R  F  G  S  S  T  T  S  S  I  F  D  F  A  G  *  S  Y  N  N  T  L  C  I :   E  A  *  V  *  R  D  Q  P  R  *  P  S  C  Q  I  R  V   : *  T  F  E  L  V  P  R  E  I  A  G  I  D  G  L  E  *  S :   A  I  A  T  I  S  K  D  K  S  A  R  C  C  S  I  Y  R  A  F  V  A  *  S  Y  T  * :   A  E  K  K  H  E  R  N  Q  *  S  *  R  A  *  D  *  V  S  G  K  S  C  S  *  E  E  E  V  F  R  P  A  I  C  S  N  C  Y  P  G  V  P  *  E  S  C  P  *  T  S  W  *  K  P  E  W  F  *  G  T  F  T  T  A  R  G  *  *  *  R  H  T  Y  E  L  I  F  * :   D  S  L  L  L  M  K  P  C  R  C  A  P  D  F  V  L  M  S  F  S  S  I  L  F  Q  F  Q  H  M  M  K  I  L  G  S  Y  T  S  F  A  A  I  A  T  L  A  A  N  R  *  C  K  L  *  F  N  R  V  C  F  R  F  S  A  M  N  P  K  L  L  R  F  S  V  R  F  V  Y  C  K  R  K  L  A  V  T  C  T  I  V  Q  Q  K  L  E  I  I  F  F  V  V  S  F  V  F  N  R  S  C  C  S  S  S  *  K  L  G  F  F  L  L  H  F  L  *  Q  D  D  Y  M  V  S  </second_frame>
            <third_frame>   C  C  V  S  S  P  I  S  I  F  C  K  F  F  W  V  K  S  D  M  E  R  V  T  Q  K  E  I  G  S  S  S  T  S  S  S  S  S  N  R  K  Q  I  P  D  S  V  M  E  A  V  N  R  T  S  K  N  M  D  D  L  S  S  N  V  D  E  F  L  S  L  Y  G  A  G  V  F  P  D  L  G  P  L  Q  Q  A  Q  S  L  I  L  L  A  K  A  T  T  T  L  F  A   : L  R  L  R  C  K  G  I  N  P  D  D  R  P  V  K  L  E  F  :  E  R  L  S  L  F  Q  E  K  L  Q  E  L  M  D  L  N  K   : A  P  L  R  P  S  A  R  I  N  P  Q  G  A  A  R  F  I  E  H  S  L  P  D  L  T  P   : E  Q  R  K  S  M  R  E  I  S  K  A  D  G  P  R  I  K  Y  L  E  R  V  V  H  K  K  R  K  Y  S  D  Q  Q  S  V  R  T  A  T  Q  E  F  L  E  K  A  A  R  E  L  L  G  E  N  Q  S  G  F  K  G  P  L  Q  L  P  E  G  D  D  E  D  I  P  M  S  *  F  S   : E  I  L  F  C  *  *  S  H  A  G  A  H  Q  I  L  C  *  *  A  F  Q  A  F  C  S  S  S  N  I  *  *  R  Y  S  D  H  T  Q  A  L  Q  Q  L  L  L  *  P  L  I  V  D  A  S  Y  N  L  I  E  S  A  F  G  F  Q  L  *  I  Q  S  C  S  V  F  L  *  G  L  F  I  V  R  E  S  W  Q  L  H  V  Q  *  C  S  R  N  *  K  L  S  F  L  *  F  H  L  F  S  I  D  P  V  A  V  A  A  K  S  W  D  F  F  Y  Y  T  F  Y  D  K  M  I  I  W  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25717" stop="26020"/>
                    <exon start="26109" stop="26164"/>
                    <exon start="26329" stop="26383"/>
                    <exon start="26724" stop="26804"/>
                    <exon start="26882" stop="27111"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCVSSPISIFCKFFWVKSDMERVTQKEIGSSSTSSSSSNRKQIPDSVMEAVNRTSKNMDDLSSNVDEFLSLYGAGVFPDLGPLQQAQSLILLAKATTTLFALRLRCKGINPDDRPVKLEFERLSLFQEKLQELMDLNKAPLRPSARINPQGAARFIEHSLPDLTPEQRKSMREISKADGPRIKYLERVVHKKRKYSDQQSVRTATQEFLEKAARELLGENQSGFKGPLQLPEGDDEDIPMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30082" e_stop="30686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30082" e_stop="30686" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30082" stop="30686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTCTCTACTTCGAAGAGGTGGAGGTAAGGTCTGTGTACATTTATTTTACCTTCCCCAGACCCCACTTTGCGGGATTTCACTGGGTATGTTGTTGTTGTAGTAGTAGTGCTTCCTTTAACCTTGAATGATTGATATTCTTTCCTTTTTGGTCCATCTAGAAATTGATACCTTTTGATTTTTGAATCTATTTTGTACTTGTGGATACCAAGGAACACGAAAACAAGTACATTGGTAACAAGGCTAATCGTTTGTATTTATCCATATTTTACTTAGATTGTTGTTTCTTTTATGAATCACATGTCTAATCAAACTACCAAATAAATCGGTGCAGTGGAGGTAGTACCTGTGGATTTGTTTAGCAATTTGGTTTTAGTTTTGGTGTCAATGTCTCCAGTTACTTCCTGTAAATTTCTTTAGCTCACAGTCAGGTACATGTTTCAGTCTTTTAATTAGTCACCTCATGATTGTGGATTTTTCTTTTTGCAACTTCCTCGGATATATGAAAGTTTACATGTTTTCATAGGGAAATGGTTTAATTAACAAAGGAGGGAATTCCCCTAAAGTAGTGGATACAAAAAGTTGAGTTTAAAATTTCCCTCTA</gDNA_template>
            <first_frame> Q  P  L  Y  F  E  E  V  E  V  R  S  V  Y  I  Y  F  T  F  P  R  P  H  F  A  G  F  H  W  V  C  C  C  C  S  S  S  A  S  F  N  L  E  *  L  I  F  F  P  F  W  S  I  *  K  L  I  P  F  D  F  *  I  Y  F  V  L  V  D  T  K  E  H  E  N  K  Y  I  G  N  K  A  N  R  L  Y  L  S  I  F  Y  L  D  C  C  F  F  Y  E  S  H  V  *  S  N  Y  Q  I  N  R  C  S  G  G  S  T  C  G  F  V  *  Q  F  G  F  S  F  G  V  N  V  S  S  Y  F  L  *  I  S  L  A  H  S  Q  V  H  V  S  V  F  *  L  V  T  S  *  L  W  I  F  L  F  A  T  S  S  D  I  *  K  F  T  C  F  H  R  E  M  V  *  L  T  K  E  G  I  P  L  K  *  W  I  Q  K  V  E  F  K  I  S  L   </first_frame>
            <second_frame>  N  L  S  T  S  K  R  W  R  *  G  L  C  T  F  I  L  P  S  P  D  P  T  L  R  D  F  T  G  Y  V  V  V  V  V  V  V  L  P  L  T  L  N  D  *  Y  S  F  L  F  G  P  S  R  N  *  Y  L  L  I  F  E  S  I  L  Y  L  W  I  P  R  N  T  K  T  S  T  L  V  T  R  L  I  V  C  I  Y  P  Y  F  T  *  I  V  V  S  F  M  N  H  M  S  N  Q  T  T  K  *  I  G  A  V  E  V  V  P  V  D  L  F  S  N  L  V  L  V  L  V  S  M  S  P  V  T  S  C  K  F  L  *  L  T  V  R  Y  M  F  Q  S  F  N  *  S  P  H  D  C  G  F  F  F  L  Q  L  P  R  I  Y  E  S  L  H  V  F  I  G  K  W  F  N  *  Q  R  R  E  F  P  *  S  S  G  Y  K  K  L  S  L  K  F  P  S  </second_frame>
            <third_frame>   T  S  L  L  R  R  G  G  G  K  V  C  V  H  L  F  Y  L  P  Q  T  P  L  C  G  I  S  L  G  M  L  L  L  *  *  *  C  F  L  *  P  *  M  I  D  I  L  S  F  L  V  H  L  E  I  D  T  F  *  F  L  N  L  F  C  T  C  G  Y  Q  G  T  R  K  Q  V  H  W  *  Q  G  *  S  F  V  F  I  H  I  L  L  R  L  L  F  L  L  *  I  T  C  L  I  K  L  P  N  K  S  V  Q  W  R  *  Y  L  W  I  C  L  A  I  W  F  *  F  W  C  Q  C  L  Q  L  L  P  V  N  F  F  S  S  Q  S  G  T  C  F  S  L  L  I  S  H  L  M  I  V  D  F  S  F  C  N  F  L  G  Y  M  K  V  Y  M  F  S  *  G  N  G  L  I  N  K  G  G  N  S  P  K  V  V  D  T  K  S  *  V  *  N  F  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0163M22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26466" e_stop="26804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="26466" e_stop="26804" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26466" stop="26804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTTAAAGTAATAACAGTGTGTCCACTTTTGATACTATTGTTTCTGATCAGTAAAAAAGAGAAAAGTATCATGCTTGCCTCCCATAACATGATGAAGAATGGGTGTGTGCTGGAGTGGATATTCAAATGATTTCTGTTTGTTCAGCATATAATAGTTATTGTTGAAGATGTGTTATTTAGAAAGTTTGATTTGTTTCCATATGACGTAACAAGGACAAATGTTGAATACTGACTATTCTCAATTTGTCCTATAAGCGCCATTGCGACCATCAGCAAGGATAAATCCGCAAGGTGCTGCTCGATTTATCGAGCATTCGTTGCCTGATCTTACACCTG</gDNA_template>
            <first_frame> F  V  *  S  N  N  S  V  S  T  F  D  T  I  V  S  D  Q  *  K  R  E  K  Y  H  A  C  L  P  *  H  D  E  E  W  V  C  A  G  V  D  I  Q  M  I  S  V  C  S  A  Y  N  S  Y  C  *  R  C  V  I  *  K  V  *  F  V  S  I  *  R  N  K  D  K  C  *  I  L  T  I  L  N  L  S  Y  K  R  H  C  D  H  Q  Q  G  *  I  R  K  V  L  L  D  L  S  S  I  R  C  L  I  L  H  L </first_frame>
            <second_frame>  S  F  K  V  I  T  V  C  P  L  L  I  L  L  F  L  I  S  K  K  E  K  S  I  M  L  A  S  H  N  M  M  K  N  G  C  V  L  E  W  I  F  K  *  F  L  F  V  Q  H  I  I  V  I  V  E  D  V  L  F  R  K  F  D  L  F  P  Y  D  V  T  R  T  N  V  E  Y  *  L  F  S  I  C  P  I  S  A  I  A  T  I  S  K  D  K  S  A  R  C  C  S  I  Y  R  A  F  V  A  *  S  Y  T   </second_frame>
            <third_frame>   R  L  K  *  *  Q  C  V  H  F  *  Y  Y  C  F  *  S  V  K  K  R  K  V  S  C  L  P  P  I  T  *  *  R  M  G  V  C  W  S  G  Y  S  N  D  F  C  L  F  S  I  *  *  L  L  L  K  M  C  Y  L  E  S  L  I  C  F  H  M  T  *  Q  G  Q  M  L  N  T  D  Y  S  Q  F  V  L  *  A  P  L  R  P  S  A  R  I  N  P  Q  G  A  A  R  F  I  E  H  S  L  P  D  L  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0163M22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="36189" PGL_stop="35082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36189" e_stop="36036"/>
            <exon e_start="35619" e_stop="35082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.655" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36189" e_stop="36036" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.655" acc_prob="0.821">
            <gDNA_intron_boundary i_start="36035" i_stop="35620" i_length="416"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="35619" e_stop="35082" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36189" stop="36036"/>
              <exon start="35619" stop="35083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36080" stop="36036"/>
              <exon start="35619" stop="35082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCACAAGCTACACCCTGATCATATGCTTTCTTCCTGAGTCATTTATTCAAAAGGCGAAATCGACAACTCCTGGACAGACATATCGGCTAATACGACATTTTTCTCTGCGCAAGATAAATGAATAGCTCTTGTTTTCAGGGGAAAAAAGAAG : GGAGGTCTTTCATGTACCGCGGCAAAGACGTAATGTCTACCAACAGGCCTGGAGTTGCCTAGTCATTTAAGGAGTCTGCTACATGTATTATTATGAGTATGGGATCAGACAAAATAATAGGTGTGTGAATACTTTCATCATCTTCACCACAGAATGCACATTCAAAAGGTACTTTACCCAGACATTTGAAGTCTATCCATTGTTACAGGCCTTTGTTGAACAGACAGCCACAAATTCAATCTGAGATGAGGATGAAGTCAATTTTGCAAGGTAAATACTCTTCTTTTGCAACTGATTCAGTCTTTGATTGCGAAAAACGAAATTACGATAGCTCAAGTTCAGTGAGCTTTAGGTATTGTATCTAGAAGAAGAAGGCTTTTTCTTTTGTACAGAAGTCATTCACCATTCCAATTTGGAATAGCAAGTGTAAGAGGAAGAAAATGATCCATAAATTTCTCTATCTTGTTTTTTCCAAACTTCATTACTTTAATTGATTTCACTTCATTAAATAAACCATTTTGTATTTATCATATTTATA</gDNA_template>
            <first_frame> A  A  Q  A  T  P  *  S  Y  A  F  F  L  S  H  L  F  K  R  R  N  R  Q  L  L  D  R  H  I  G  *  Y  D  I  F  L  C  A  R  *  M  N  S  S  C  F  Q  G  K  K  E   : G  R  S  F  M  Y  R  G  K  D  V  M  S  T  N  R  P  G  V  A  *  S  F  K  E  S  A  T  C  I  I  M  S  M  G  S  D  K  I  I  G  V  *  I  L  S  S  S  S  P  Q  N  A  H  S  K  G  T  L  P  R  H  L  K  S  I  H  C  Y  R  P  L  L  N  R  Q  P  Q  I  Q  S  E  M  R  M  K  S  I  L  Q  G  K  Y  S  S  F  A  T  D  S  V  F  D  C  E  K  R  N  Y  D  S  S  S  S  V  S  F  R  Y  C  I  *  K  K  K  A  F  S  F  V  Q  K  S  F  T  I  P  I  W  N  S  K  C  K  R  K  K  M  I  H  K  F  L  Y  L  V  F  S  K  L  H  Y  F  N  *  F  H  F  I  K  *  T  I  L  Y  L  S  Y  L   </first_frame>
            <second_frame>  Q  H  K  L  H  P  D  H  M  L  S  S  *  V  I  Y  S  K  G  E  I  D  N  S  W  T  D  I  S  A  N  T  T  F  F  S  A  Q  D  K  *  I  A  L  V  F  R  G  K  K  K  :  G  G  L  S  C  T  A  A  K  T  *  C  L  P  T  G  L  E  L  P  S  H  L  R  S  L  L  H  V  L  L  *  V  W  D  Q  T  K  *  *  V  C  E  Y  F  H  H  L  H  H  R  M  H  I  Q  K  V  L  Y  P  D  I  *  S  L  S  I  V  T  G  L  C  *  T  D  S  H  K  F  N  L  R  *  G  *  S  Q  F  C  K  V  N  T  L  L  L  Q  L  I  Q  S  L  I  A  K  N  E  I  T  I  A  Q  V  Q  *  A  L  G  I  V  S  R  R  R  R  L  F  L  L  Y  R  S  H  S  P  F  Q  F  G  I  A  S  V  R  G  R  K  *  S  I  N  F  S  I  L  F  F  P  N  F  I  T  L  I  D  F  T  S  L  N  K  P  F  C  I  Y  H  I  Y  </second_frame>
            <third_frame>   S  T  S  Y  T  L  I  I  C  F  L  P  E  S  F  I  Q  K  A  K  S  T  T  P  G  Q  T  Y  R  L  I  R  H  F  S  L  R  K  I  N  E  *  L  L  F  S  G  E  K  R  R :   E  V  F  H  V  P  R  Q  R  R  N  V  Y  Q  Q  A  W  S  C  L  V  I  *  G  V  C  Y  M  Y  Y  Y  E  Y  G  I  R  Q  N  N  R  C  V  N  T  F  I  I  F  T  T  E  C  T  F  K  R  Y  F  T  Q  T  F  E  V  Y  P  L  L  Q  A  F  V  E  Q  T  A  T  N  S  I  *  D  E  D  E  V  N  F  A  R  *  I  L  F  F  C  N  *  F  S  L  *  L  R  K  T  K  L  R  *  L  K  F  S  E  L  *  V  L  Y  L  E  E  E  G  F  F  F  C  T  E  V  I  H  H  S  N  L  E  *  Q  V  *  E  E  E  N  D  P  *  I  S  L  S  C  F  F  Q  T  S  L  L  *  L  I  S  L  H  *  I  N  H  F  V  F  I  I  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35491" stop="35255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSSSPQNAHSKGTLPRHLKSIHCYRPLLNRQPQIQSEMRMKSILQGKYSSFATDSVFDCEKRNYDSSSSVSFRYCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="46955" PGL_stop="39678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46955" e_stop="46895"/>
            <exon e_start="44939" e_stop="44855"/>
            <exon e_start="44664" e_stop="44606"/>
            <exon e_start="44508" e_stop="44439"/>
            <exon e_start="44289" e_stop="44198"/>
            <exon e_start="42024" e_stop="41962"/>
            <exon e_start="41623" e_stop="41557"/>
            <exon e_start="39935" e_stop="39678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.934" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.813" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46955" e_stop="46895" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46894" i_stop="44940" i_length="1955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44939" e_stop="44855" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44854" i_stop="44665" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44664" e_stop="44606" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44605" i_stop="44509" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44508" e_stop="44439" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44438" i_stop="44290" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44289" e_stop="44198" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44197" i_stop="42025" i_length="2173"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="42024" e_stop="41962" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.934">
            <gDNA_intron_boundary i_start="41961" i_stop="41624" i_length="338"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="41623" e_stop="41557" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.813">
            <gDNA_intron_boundary i_start="41556" i_stop="39936" i_length="1621"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39935" e_stop="39678" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46955" stop="46895"/>
              <exon start="44939" stop="44855"/>
              <exon start="44664" stop="44606"/>
              <exon start="44508" stop="44439"/>
              <exon start="44289" stop="44198"/>
              <exon start="42024" stop="41962"/>
              <exon start="41623" stop="41557"/>
              <exon start="39935" stop="39678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46955" stop="46895"/>
              <exon start="44939" stop="44855"/>
              <exon start="44664" stop="44606"/>
              <exon start="44508" stop="44439"/>
              <exon start="44289" stop="44198"/>
              <exon start="42024" stop="41962"/>
              <exon start="41623" stop="41557"/>
              <exon start="39935" stop="39708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46954" stop="46895"/>
              <exon start="44939" stop="44855"/>
              <exon start="44664" stop="44606"/>
              <exon start="44508" stop="44439"/>
              <exon start="44289" stop="44198"/>
              <exon start="42024" stop="41962"/>
              <exon start="41623" stop="41557"/>
              <exon start="39935" stop="39809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46954" stop="46895"/>
              <exon start="44939" stop="44855"/>
              <exon start="44664" stop="44606"/>
              <exon start="44508" stop="44439"/>
              <exon start="44289" stop="44198"/>
              <exon start="42024" stop="41962"/>
              <exon start="41623" stop="41557"/>
              <exon start="39935" stop="39871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCAGCAGTTGAACTTATCCAAGCTCGGTTATCTGAAAGACCTTGTGACCCTAGGTTATG : GTGTTCCCTTGGAGATGTTACAAGTGATGATAAATGCTATGAGAAAGCCCTAGAAGTGTCTGGGAATAAGTCAGCTCGAGCACAG : CGTGCCCTTGCCCGTAGTGCATACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATG : GGAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCTGCTTTAAAG : GCTAGAGATGTTGAGAAGGCACTGGATGGCTTCACCCGTGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCT : GCATATGGTTAAGAAGAAAAACAAGGAAGCTTTTATTGCATTCAAGGAAGCATTGAAGCTGAA : GCGAGACAGCTGGCAGATGTGGGAAAATTTTAGCCGTGTTGCTGCAGATATTGGAAATTTCAGTCAG : GCACTGGAAGCAGTACAAAAGGTATTGGATATGACGAAAAAGAAGCGAATCGATGTCGAATTACTGGAGAGGATGTTGCAAGAGTTGGAATTACGGACTGCAACTAGCCATTCTGAATGCGATGCTTTGAGGGGTAGCAGTGACTCTTCCGAGGCGGGCTCCGACATCATTAGTGTTGATCCATTGACCAGCTCGGACAAAGATCTGGCAATAGAACGGGAAACTGAGCACTTGATTCAGTCAGTGGGTAAAATCTTA</gDNA_template>
            <first_frame> R  Q  Q  L  N  L  S  K  L  G  Y  L  K  D  L  V  T  L  G  Y   : G  V  P  L  E  M  L  Q  V  M  I  N  A  M  R  K  P  *  K  C  L  G  I  S  Q  L  E  H  S :   V  P  L  P  V  V  H  T  T  G  G  S  T  R  S  Q  K  I  Y   : G  N  L  Q  W  Q  *  I  L  C  I  Q  M  D  G  L  H  L  V  L  L  L  *  R :   L  E  M  L  R  R  H  W  M  A  S  P  V  L  F  S  L  I  L  K  M  E  R  L  G  I  I  L  L  A   : C  I  W  L  R  R  K  T  R  K  L  L  L  H  S  R  K  H  *  S  *   : S  E  T  A  G  R  C  G  K  I  L  A  V  L  L  Q  I  L  E  I  S  V  R :   H  W  K  Q  Y  K  R  Y  W  I  *  R  K  R  S  E  S  M  S  N  Y  W  R  G  C  C  K  S  W  N  Y  G  L  Q  L  A  I  L  N  A  M  L  *  G  V  A  V  T  L  P  R  R  A  P  T  S  L  V  L  I  H  *  P  A  R  T  K  I  W  Q  *  N  G  K  L  S  T  *  F  S  Q  W  V  K  S   </first_frame>
            <second_frame>  G  S  S  *  T  Y  P  S  S  V  I  *  K  T  L  *  P  *  V  M  :  V  F  P  W  R  C  Y  K  *  *  *  M  L  *  E  S  P  R  S  V  W  E  *  V  S  S  S  T   : A  C  P  C  P  *  C  I  Q  Q  G  G  V  R  E  V  K  R  S  M  :  G  I  C  N  G  N  E  F  Y  V  S  R  W  M  V  C  T  W  C  C  C  F  K   : G  *  R  C  *  E  G  T  G  W  L  H  P  C  C  S  A  *  S  *  K  W  R  G  L  E  *  Y  C  L  P  :  A  Y  G  *  E  E  K  Q  G  S  F  Y  C  I  Q  G  S  I  E  A  E  :  A  R  Q  L  A  D  V  G  K  F  *  P  C  C  C  R  Y  W  K  F  Q  S   : G  T  G  S  S  T  K  G  I  G  Y  D  E  K  E  A  N  R  C  R  I  T  G  E  D  V  A  R  V  G  I  T  D  C  N  *  P  F  *  M  R  C  F  E  G  *  Q  *  L  F  R  G  G  L  R  H  H  *  C  *  S  I  D  Q  L  G  Q  R  S  G  N  R  T  G  N  *  A  L  D  S  V  S  G  *  N  L  </second_frame>
            <third_frame>   A  A  V  E  L  I  Q  A  R  L  S  E  R  P  C  D  P  R  L  W :   C  S  L  G  D  V  T  S  D  D  K  C  Y  E  K  A  L  E  V  S  G  N  K  S  A  R  A  Q  :  R  A  L  A  R  S  A  Y  N  R  G  E  Y  E  K  S  K  D  L  W :   E  S  A  M  A  M  N  S  M  Y  P  D  G  W  F  A  L  G  A  A  A  L  K  :  A  R  D  V  E  K  A  L  D  G  F  T  R  A  V  Q  L  D  P  E  N  G  E  A  W  N  N  I  A  C  L :   H  M  V  K  K  K  N  K  E  A  F  I  A  F  K  E  A  L  K  L  K :   R  D  S  W  Q  M  W  E  N  F  S  R  V  A  A  D  I  G  N  F  S  Q  :  A  L  E  A  V  Q  K  V  L  D  M  T  K  K  K  R  I  D  V  E  L  L  E  R  M  L  Q  E  L  E  L  R  T  A  T  S  H  S  E  C  D  A  L  R  G  S  S  D  S  S  E  A  G  S  D  I  I  S  V  D  P  L  T  S  S  D  K  D  L  A  I  E  R  E  T  E  H  L  I  Q  S  V  G  K  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46953" stop="46895"/>
                    <exon start="44939" stop="44855"/>
                    <exon start="44664" stop="44606"/>
                    <exon start="44508" stop="44439"/>
                    <exon start="44289" stop="44198"/>
                    <exon start="42024" stop="41962"/>
                    <exon start="41623" stop="41557"/>
                    <exon start="39935" stop="39678"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAVELIQARLSERPCDPRLWCSLGDVTSDDKCYEKALEVSGNKSARAQRALARSAYNRGEYEKSKDLWESAMAMNSMYPDGWFALGAAALKARDVEKALDGFTRAVQLDPENGEAWNNIACLHMVKKKNKEAFIAFKEALKLKRDSWQMWENFSRVAADIGNFSQALEAVQKVLDMTKKKRIDVELLERMLQELELRTATSHSECDALRGSSDSSEAGSDIISVDPLTSSDKDLAIERETEHLIQSVGKIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="57940" PGL_stop="58262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57940" e_stop="58262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="57940" e_stop="58262" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTCGTATAAAGCTAGAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  S  Y  K  A  R  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  R  I  K  L  E  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  D  L  F  L  C  N  I  *  N  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  I  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0163M22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58590" PGL_stop="62696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58590" e_stop="59133"/>
            <exon e_start="61439" e_stop="61562"/>
            <exon e_start="62398" e_stop="62696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.515" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="58590" e_stop="59133" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59134" i_stop="61438" i_length="2305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61439" e_stop="61562" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.515" acc_prob="0.989">
            <gDNA_intron_boundary i_start="61563" i_stop="62397" i_length="835"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62398" e_stop="62696" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58590" stop="59133"/>
              <exon start="61439" stop="61562"/>
              <exon start="62398" stop="62689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58601" stop="59133"/>
              <exon start="61439" stop="61477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58605" stop="59133"/>
              <exon start="61439" stop="61484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58619" stop="59133"/>
              <exon start="61439" stop="61562"/>
              <exon start="62398" stop="62549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58625" stop="59133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58640" stop="58994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58644" stop="59133"/>
              <exon start="61439" stop="61562"/>
              <exon start="62398" stop="62573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58843" stop="59133"/>
              <exon start="61439" stop="61562"/>
              <exon start="62398" stop="62696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578253" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCCCAAAAAAAAAAATCCCTGTTTTCTCATGGCTCGTTTCCTCTCAAATCCCTTAACCCGAACCCGAATTCTGACCCGACCCGTATTCTCCCCACCTCTTCTCCTCACTCTCCGGCACCGTTCAAACTCCAATCGCTCCGGCGGTGGATCCGGTGATGGTGGAGGTGAACCACCTCACCCTCAGTTAATCGAGATCGACCTAGATTCGTCATCTAGTGGATCGGACGGTGGGGTAAAGAAGTTGGAGGAGGTAATCCATTCGGTTATCGTGAGGCGTTCTGCTCCAGATTGGTTACCTTTTTTGCCTGGATCATCTTACTGGGTTCCACCTCCACAACCGTACGTGAAAGTTGGGGGAATACATAGTAATCGTGGTGATTTTGATCCTCATAGGATACTAGAGGTTGTTGGGAAAATGGCTGCTGTGAAGAGTCATTTTGGTTCTGCTTCTTCGTTATCGGCTTCCTCTTTGTTATCAGAGGATGAAACGAGGTCGGTTTCTCGTGTTCGTGGATGGCCTTCGTCCTCGTTTTTTACTGGAG : GACCTGCTTTCCCAACCCCAGTGCAGGTGGTGGAAGTGGAGGTGAAGCTTGAGGACAACCCGGATAATGATTCTAAATCTGAGGACGAAGGATAAATGACCTGTCTGTGTAGTGAGCTTCTGTA : GCTTAGTAACCTTGTAAATTCTTTGAAAACCTGGAAAACATAAGAAGCTGCTTACCTCATGAAGGAGGAGCAAACAAAGTTACACGGATCAGAGTTTGGGGTTTTAGTTCTTTAATCCGCGCTCTTGTTCAATGTAGTGGTTCAAGTTACACAGATCGGAGTTTGGGGTTTTAGTTCTTCAATCCGCGCTCTTGTTCAATGTAGTGGTTCAATGCTCAACCTAGCTAGAAAAAATCTATGTATTTATGATGGTGTTTGAACTCTATGATCTGGAAAATAATCAGCCTGCTTAGTTTAAC</gDNA_template>
            <first_frame> K  P  K  K  K  N  P  C  F  L  M  A  R  F  L  S  N  P  L  T  R  T  R  I  L  T  R  P  V  F  S  P  P  L  L  L  T  L  R  H  R  S  N  S  N  R  S  G  G  G  S  G  D  G  G  G  E  P  P  H  P  Q  L  I  E  I  D  L  D  S  S  S  S  G  S  D  G  G  V  K  K  L  E  E  V  I  H  S  V  I  V  R  R  S  A  P  D  W  L  P  F  L  P  G  S  S  Y  W  V  P  P  P  Q  P  Y  V  K  V  G  G  I  H  S  N  R  G  D  F  D  P  H  R  I  L  E  V  V  G  K  M  A  A  V  K  S  H  F  G  S  A  S  S  L  S  A  S  S  L  L  S  E  D  E  T  R  S  V  S  R  V  R  G  W  P  S  S  S  F  F  T  G   : G  P  A  F  P  T  P  V  Q  V  V  E  V  E  V  K  L  E  D  N  P  D  N  D  S  K  S  E  D  E  G  *  M  T  C  L  C  S  E  L  L  * :   L  S  N  L  V  N  S  L  K  T  W  K  T  *  E  A  A  Y  L  M  K  E  E  Q  T  K  L  H  G  S  E  F  G  V  L  V  L  *  S  A  L  L  F  N  V  V  V  Q  V  T  Q  I  G  V  W  G  F  S  S  S  I  R  A  L  V  Q  C  S  G  S  M  L  N  L  A  R  K  N  L  C  I  Y  D  G  V  *  T  L  *  S  G  K  *  S  A  C  L  V  *  </first_frame>
            <second_frame>  S  P  K  K  K  I  P  V  F  S  W  L  V  S  S  Q  I  P  *  P  E  P  E  F  *  P  D  P  Y  S  P  H  L  F  S  S  L  S  G  T  V  Q  T  P  I  A  P  A  V  D  P  V  M  V  E  V  N  H  L  T  L  S  *  S  R  S  T  *  I  R  H  L  V  D  R  T  V  G  *  R  S  W  R  R  *  S  I  R  L  S  *  G  V  L  L  Q  I  G  Y  L  F  C  L  D  H  L  T  G  F  H  L  H  N  R  T  *  K  L  G  E  Y  I  V  I  V  V  I  L  I  L  I  G  Y  *  R  L  L  G  K  W  L  L  *  R  V  I  L  V  L  L  L  R  Y  R  L  P  L  C  Y  Q  R  M  K  R  G  R  F  L  V  F  V  D  G  L  R  P  R  F  L  L  E  :  D  L  L  S  Q  P  Q  C  R  W  W  K  W  R  *  S  L  R  T  T  R  I  M  I  L  N  L  R  T  K  D  K  *  P  V  C  V  V  S  F  C   : S  L  V  T  L  *  I  L  *  K  P  G  K  H  K  K  L  L  T  S  *  R  R  S  K  Q  S  Y  T  D  Q  S  L  G  F  *  F  F  N  P  R  S  C  S  M  *  W  F  K  L  H  R  S  E  F  G  V  L  V  L  Q  S  A  L  L  F  N  V  V  V  Q  C  S  T  *  L  E  K  I  Y  V  F  M  M  V  F  E  L  Y  D  L  E  N  N  Q  P  A  *  F  N </second_frame>
            <third_frame>   A  Q  K  K  K  S  L  F  S  H  G  S  F  P  L  K  S  L  N  P  N  P  N  S  D  P  T  R  I  L  P  T  S  S  P  H  S  P  A  P  F  K  L  Q  S  L  R  R  W  I  R  *  W  W  R  *  T  T  S  P  S  V  N  R  D  R  P  R  F  V  I  *  W  I  G  R  W  G  K  E  V  G  G  G  N  P  F  G  Y  R  E  A  F  C  S  R  L  V  T  F  F  A  W  I  I  L  L  G  S  T  S  T  T  V  R  E  S  W  G  N  T  *  *  S  W  *  F  *  S  S  *  D  T  R  G  C  W  E  N  G  C  C  E  E  S  F  W  F  C  F  F  V  I  G  F  L  F  V  I  R  G  *  N  E  V  G  F  S  C  S  W  M  A  F  V  L  V  F  Y  W  R :   T  C  F  P  N  P  S  A  G  G  G  S  G  G  E  A  *  G  Q  P  G  *  *  F  *  I  *  G  R  R  I  N  D  L  S  V  *  *  A  S  V  :  A  *  *  P  C  K  F  F  E  N  L  E  N  I  R  S  C  L  P  H  E  G  G  A  N  K  V  T  R  I  R  V  W  G  F  S  S  L  I  R  A  L  V  Q  C  S  G  S  S  Y  T  D  R  S  L  G  F  *  F  F  N  P  R  S  C  S  M  *  W  F  N  A  Q  P  S  *  K  K  S  M  Y  L  *  W  C  L  N  S  M  I  W  K  I  I  S  L  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58590" stop="59133"/>
                    <exon start="61439" stop="61533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPKKKNPCFLMARFLSNPLTRTRILTRPVFSPPLLLTLRHRSNSNRSGGGSGDGGGEPPHPQLIEIDLDSSSSGSDGGVKKLEEVIHSVIVRRSAPDWLPFLPGSSYWVPPPQPYVKVGGIHSNRGDFDPHRILEVVGKMAAVKSHFGSASSLSASSLLSEDETRSVSRVRGWPSSSFFTGGPAFPTPVQVVEVEVKLEDNPDNDSKSEDEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64853" PGL_stop="73047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64854" e_stop="65013"/>
            <exon e_start="67982" e_stop="68193"/>
            <exon e_start="69811" e_stop="70050"/>
            <exon e_start="71996" e_stop="72147"/>
            <exon e_start="72525" e_stop="72585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.982" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64854" e_stop="65013" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.972">
            <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67982" e_stop="68193" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="69811" e_stop="70050" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70051" i_stop="71995" i_length="1945"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="71996" e_stop="72147" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72148" i_stop="72524" i_length="377"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="72525" e_stop="72585" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64854" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="70050"/>
              <exon start="71996" stop="72147"/>
              <exon start="72525" stop="72585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64869" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="70013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64869" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="69984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64892" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="70050"/>
              <exon start="71996" stop="72147"/>
              <exon start="72525" stop="72580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAAGCAAAGCTCCGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG : CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTAC : TGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCT : ATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAG : CAGAGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGG</gDNA_template>
            <first_frame> A  *  A  K  L  R  S  S  K  A  R  E  N  R  E  S  F  N  G  G  K  T  *  K  S  Q  L  N  I  G  T  T  I  V  F  F  C  L  C  L  S  K  I  S  R  R  N  P  *  E  T  T  P   : A  P  I  I  S  G  F  T  D  V  K  L  S  D  A  P  S  H  V  S  N  T  A  S  W  S  F  R  Y  A  A  K  S  G  G  V  E  P  W  T  R  P  L  C  C  T  C  C  P  F  Y  G  T  I  C  R  V  S  T  K  H  S  N  S  I  Y  L  R  C  T  Y  :  W  T  *  C  S  R  K  W  S  C  R  *  G  A  R  S  D  G  T  A  A  A  S  A  A  T  A  W  T  P  T  T  N  S  C  Q  K  I  S  N  C  I  S  A  R  S  L  A  Y  F  E  A  G  C  S  D  F  F  V  Q  S  R  W  I  K  T  E  T  C  S  A  C  V  F  S  F  T  C  V  P  :  I  S  N  W  S  S  C  T  L  G  T  V  A  F  T  R  N  A  E  G  C  C  T  S  P  T  T  *  A  S  C  K  G  R  *  C  T  R  C  W  K  A  R  K  *  Q  C  C  S  W  S :   R  G  T  T  W  R  *  K  *  E  S  T  R  *  R  C  K  *  G  R </first_frame>
            <second_frame>  P  K  Q  S  S  D  L  Q  K  Q  E  K  I  E  K  A  S  M  A  E  K  H  E  N  L  S  S  T  S  E  Q  Q  S  S  S  S  A  S  A  Y  Q  K  S  P  E  E  T  L  K  K  Q  P  Q  :  L  P  S  F  Q  G  S  P  M  L  N  Y  Q  M  L  Q  A  M  Y  P  T  L  L  P  G  A  F  G  M  Q  P  N  Q  E  E  L  N  H  G  P  G  L  Y  A  V  P  V  A  P  F  M  G  Q  Y  A  G  F  P  P  N  T  L  I  P  F  T  Y  A  V  P  T :   G  P  S  V  P  E  N  G  A  V  G  E  E  Q  G  Q  M  G  Q  Q  Q  P  Q  Q  Q  Q  L  G  P  Q  R  Q  I  V  V  R  R  F  Q  I  A  F  Q  L  D  L  L  L  I  L  K  L  A  A  V  I  F  L  F  N  Q  D  G  S  R  Q  R  L  V  L  L  V  F  L  A  S  L  V  Y  L :   Y  Q  T  G  A  L  A  P  L  V  R  W  L  S  Q  G  M  Q  R  A  A  A  P  P  Q  P  P  R  P  A  V  R  A  D  N  V  P  G  A  G  R  Q  G  N  D  N  V  A  A  G   : A  E  G  Q  P  G  G  E  N  E  N  L  L  G  N  D  V  N  R  V   </second_frame>
            <third_frame>   L  S  K  A  P  I  F  K  S  K  R  K  *  R  K  L  Q  W  R  K  N  M  K  I  S  A  Q  H  R  N  N  N  R  L  L  L  P  L  L  I  K  N  L  Q  K  K  P  L  R  N  N  P  S :   S  H  H  F  R  V  H  R  C  *  I  I  R  C  S  K  P  C  I  Q  H  C  F  L  E  L  S  V  C  S  Q  I  R  R  S  *  T  M  D  Q  A  F  M  L  Y  L  L  P  L  L  W  D  N  M  Q  G  F  H  Q  T  L  *  F  H  L  L  T  L  Y  L   : L  D  L  V  F  Q  K  M  E  L  *  V  R  S  K  V  R  W  D  S  S  S  L  S  S  N  S  L  D  P  N  D  K  *  L  S  E  D  F  K  L  H  F  S  *  I  S  C  L  F  *  S  W  L  Q  *  F  F  C  S  I  K  M  D  Q  D  R  D  L  F  C  L  C  F  *  L  H  L  C  T   : Y  I  K  L  E  L  L  H  P  W  Y  G  G  F  H  K  E  C  R  G  L  L  H  L  P  N  H  L  G  Q  L  *  G  Q  I  M  Y  Q  V  L  E  G  K  E  M  T  M  L  Q  L  E  :  Q  R  D  N  L  E  V  K  M  R  I  Y  *  V  T  M  *  I  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64855" stop="65013"/>
                    <exon start="67982" stop="68193"/>
                    <exon start="69811" stop="70050"/>
                    <exon start="71996" stop="72147"/>
                    <exon start="72525" stop="72583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKQSSDLQKQEKIEKASMAEKHENLSSTSEQQSSSSASAYQKSPEETLKKQPQLPSFQGSPMLNYQMLQAMYPTLLPGAFGMQPNQEELNHGPGLYAVPVAPFMGQYAGFPPNTLIPFTYAVPTGPSVPENGAVGEEQGQMGQQQPQQQQLGPQRQIVVRRFQIAFQLDLLLILKLAAVIFLFNQDGSRQRLVLLVFLASLVYLYQTGALAPLVRWLSQGMQRAAAPPQPPRPAVRADNVPGAGRQGNDNVAAGAEGQPGGENENLLGNDVNRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64853" e_stop="65013"/>
            <exon e_start="67982" e_stop="68193"/>
            <exon e_start="69811" e_stop="70050"/>
            <exon e_start="71996" e_stop="72147"/>
            <exon e_start="72528" e_stop="73047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64853" e_stop="65013" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.972">
            <gDNA_intron_boundary i_start="65014" i_stop="67981" i_length="2968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67982" e_stop="68193" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68194" i_stop="69810" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69811" e_stop="70050" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70051" i_stop="71995" i_length="1945"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71996" e_stop="72147" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72148" i_stop="72527" i_length="380"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="72528" e_stop="73047" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64853" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="70050"/>
              <exon start="71996" stop="72147"/>
              <exon start="72528" stop="72963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64869" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="70013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64869" stop="65013"/>
              <exon start="67982" stop="68193"/>
              <exon start="69811" stop="69984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72115" stop="72147"/>
              <exon start="72528" stop="73047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCTAAGCAAAGCTCCGATCTTCAAAAGCAAGAGAAAATAGAGAAAGCTTCAATGGCGGAAAAACATGAAAATCTCAGCTCAACATCGGAACAACAATCGTCTTCTTCTGCCTCTGCTTATCAAAAATCTCCAGAAGAAACCCTTAAGAAACAACCCCAG : CTCCCATCATTTCAGGGTTCACCGATGTTAAATTATCAGATGCTCCAAGCCATGTATCCAACACTGCTTCCTGGAGCTTTCGGTATGCAGCCAAATCAGGAGGAGTTGAACCATGGACCAGGCCTTTATGCTGTACCTGTTGCCCCTTTTATGGGACAATATGCAGGGTTTCCACCAAACACTCTAATTCCATTTACTTACGCTGTACCTAC : TGGACCTAGTGTTCCAGAAAATGGAGCTGTAGGTGAGGAGCAAGGTCAGATGGGACAGCAGCAGCCTCAGCAGCAACAGCTTGGACCCCAACGACAAATAGTTGTCAGAAGATTTCAAATTGCATTTCAGCTAGATCTCTTGCTTATTTTGAAGCTGGCTGCAGTGATTTTTTTGTTCAATCAAGATGGATCAAGACAGAGACTTGTTCTGCTTGTGTTTTTAGCTTCACTTGTGTACCT : ATATCAAACTGGAGCTCTTGCACCCTTGGTACGGTGGCTTTCACAAGGAATGCAGAGGGCTGCTGCACCTCCCCAACCACCTAGGCCAGCTGTAAGGGCAGATAATGTACCAGGTGCTGGAAGGCAAGGAAATGACAATGTTGCAGCTGGAG : AGGGACAACCTGGAGGTGAAAATGAGAATCTACTAGGTAACGATGTAAATAGGGTAGGCGAGAATGAGCAGGCAGTGGAACCCGGAGCTGCTGACGCTGGCAACCGTTGGTGGGGTATCGCAAAGGAGATCCAAATGATTGTCTTTGGCTTCATAACTTCCCTTCTTCCAGGTTTTCACAACATTGACTAGATTGTACAGATCAAGTAGCAGTTGCAGATAGCAAAGAGGGATAAAGAGAATTTTTCTTTTGCTACCATGTTGTTTTGAGAGGACATCAAATGTATAACTTAAAGATAGTTTTCTCTTCTATTTGGTCATAACATAGATCATCATAGTTTTCTCTTCTATTTGGTCATAACATAGATCTAAATGATGTTGTTGTTCTTAATATGATTGGCGAGGTTGTGTTTAAATAGTGAAAAATAGTTGCTTAATCCTCTACTTATGTTTATAACAACTTGTGGTATTCGATTTGGTATTACAAAAGTTTGGTTAACTTTGGTATGGTAAAAATGTTT</gDNA_template>
            <first_frame> G  L  S  K  A  P  I  F  K  S  K  R  K  *  R  K  L  Q  W  R  K  N  M  K  I  S  A  Q  H  R  N  N  N  R  L  L  L  P  L  L  I  K  N  L  Q  K  K  P  L  R  N  N  P  S :   S  H  H  F  R  V  H  R  C  *  I  I  R  C  S  K  P  C  I  Q  H  C  F  L  E  L  S  V  C  S  Q  I  R  R  S  *  T  M  D  Q  A  F  M  L  Y  L  L  P  L  L  W  D  N  M  Q  G  F  H  Q  T  L  *  F  H  L  L  T  L  Y  L   : L  D  L  V  F  Q  K  M  E  L  *  V  R  S  K  V  R  W  D  S  S  S  L  S  S  N  S  L  D  P  N  D  K  *  L  S  E  D  F  K  L  H  F  S  *  I  S  C  L  F  *  S  W  L  Q  *  F  F  C  S  I  K  M  D  Q  D  R  D  L  F  C  L  C  F  *  L  H  L  C  T   : Y  I  K  L  E  L  L  H  P  W  Y  G  G  F  H  K  E  C  R  G  L  L  H  L  P  N  H  L  G  Q  L  *  G  Q  I  M  Y  Q  V  L  E  G  K  E  M  T  M  L  Q  L  E  :  R  D  N  L  E  V  K  M  R  I  Y  *  V  T  M  *  I  G  *  A  R  M  S  R  Q  W  N  P  E  L  L  T  L  A  T  V  G  G  V  S  Q  R  R  S  K  *  L  S  L  A  S  *  L  P  F  F  Q  V  F  T  T  L  T  R  L  Y  R  S  S  S  S  C  R  *  Q  R  G  I  K  R  I  F  L  L  L  P  C  C  F  E  R  T  S  N  V  *  L  K  D  S  F  L  F  Y  L  V  I  T  *  I  I  I  V  F  S  S  I  W  S  *  H  R  S  K  *  C  C  C  S  *  Y  D  W  R  G  C  V  *  I  V  K  N  S  C  L  I  L  Y  L  C  L  *  Q  L  V  V  F  D  L  V  L  Q  K  F  G  *  L  W  Y  G  K  N  V  </first_frame>
            <second_frame>  A  *  A  K  L  R  S  S  K  A  R  E  N  R  E  S  F  N  G  G  K  T  *  K  S  Q  L  N  I  G  T  T  I  V  F  F  C  L  C  L  S  K  I  S  R  R  N  P  *  E  T  T  P   : A  P  I  I  S  G  F  T  D  V  K  L  S  D  A  P  S  H  V  S  N  T  A  S  W  S  F  R  Y  A  A  K  S  G  G  V  E  P  W  T  R  P  L  C  C  T  C  C  P  F  Y  G  T  I  C  R  V  S  T  K  H  S  N  S  I  Y  L  R  C  T  Y  :  W  T  *  C  S  R  K  W  S  C  R  *  G  A  R  S  D  G  T  A  A  A  S  A  A  T  A  W  T  P  T  T  N  S  C  Q  K  I  S  N  C  I  S  A  R  S  L  A  Y  F  E  A  G  C  S  D  F  F  V  Q  S  R  W  I  K  T  E  T  C  S  A  C  V  F  S  F  T  C  V  P  :  I  S  N  W  S  S  C  T  L  G  T  V  A  F  T  R  N  A  E  G  C  C  T  S  P  T  T  *  A  S  C  K  G  R  *  C  T  R  C  W  K  A  R  K  *  Q  C  C  S  W  R :   G  T  T  W  R  *  K  *  E  S  T  R  *  R  C  K  *  G  R  R  E  *  A  G  S  G  T  R  S  C  *  R  W  Q  P  L  V  G  Y  R  K  G  D  P  N  D  C  L  W  L  H  N  F  P  S  S  R  F  S  Q  H  *  L  D  C  T  D  Q  V  A  V  A  D  S  K  E  G  *  R  E  F  F  F  C  Y  H  V  V  L  R  G  H  Q  M  Y  N  L  K  I  V  F  S  S  I  W  S  *  H  R  S  S  *  F  S  L  L  F  G  H  N  I  D  L  N  D  V  V  V  L  N  M  I  G  E  V  V  F  K  *  *  K  I  V  A  *  S  S  T  Y  V  Y  N  N  L  W  Y  S  I  W  Y  Y  K  S  L  V  N  F  G  M  V  K  M  F </second_frame>
            <third_frame>   P  K  Q  S  S  D  L  Q  K  Q  E  K  I  E  K  A  S  M  A  E  K  H  E  N  L  S  S  T  S  E  Q  Q  S  S  S  S  A  S  A  Y  Q  K  S  P  E  E  T  L  K  K  Q  P  Q  :  L  P  S  F  Q  G  S  P  M  L  N  Y  Q  M  L  Q  A  M  Y  P  T  L  L  P  G  A  F  G  M  Q  P  N  Q  E  E  L  N  H  G  P  G  L  Y  A  V  P  V  A  P  F  M  G  Q  Y  A  G  F  P  P  N  T  L  I  P  F  T  Y  A  V  P  T :   G  P  S  V  P  E  N  G  A  V  G  E  E  Q  G  Q  M  G  Q  Q  Q  P  Q  Q  Q  Q  L  G  P  Q  R  Q  I  V  V  R  R  F  Q  I  A  F  Q  L  D  L  L  L  I  L  K  L  A  A  V  I  F  L  F  N  Q  D  G  S  R  Q  R  L  V  L  L  V  F  L  A  S  L  V  Y  L :   Y  Q  T  G  A  L  A  P  L  V  R  W  L  S  Q  G  M  Q  R  A  A  A  P  P  Q  P  P  R  P  A  V  R  A  D  N  V  P  G  A  G  R  Q  G  N  D  N  V  A  A  G   : E  G  Q  P  G  G  E  N  E  N  L  L  G  N  D  V  N  R  V  G  E  N  E  Q  A  V  E  P  G  A  A  D  A  G  N  R  W  W  G  I  A  K  E  I  Q  M  I  V  F  G  F  I  T  S  L  L  P  G  F  H  N  I  D  *  I  V  Q  I  K  *  Q  L  Q  I  A  K  R  D  K  E  N  F  S  F  A  T  M  L  F  *  E  D  I  K  C  I  T  *  R  *  F  S  L  L  F  G  H  N  I  D  H  H  S  F  L  F  Y  L  V  I  T  *  I  *  M  M  L  L  F  L  I  *  L  A  R  L  C  L  N  S  E  K  *  L  L  N  P  L  L  M  F  I  T  T  C  G  I  R  F  G  I  T  K  V  W  L  T  L  V  W  *  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64855" stop="65013"/>
                    <exon start="67982" stop="68193"/>
                    <exon start="69811" stop="70050"/>
                    <exon start="71996" stop="72147"/>
                    <exon start="72528" stop="72718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKQSSDLQKQEKIEKASMAEKHENLSSTSEQQSSSSASAYQKSPEETLKKQPQLPSFQGSPMLNYQMLQAMYPTLLPGAFGMQPNQEELNHGPGLYAVPVAPFMGQYAGFPPNTLIPFTYAVPTGPSVPENGAVGEEQGQMGQQQPQQQQLGPQRQIVVRRFQIAFQLDLLLILKLAAVIFLFNQDGSRQRLVLLVFLASLVYLYQTGALAPLVRWLSQGMQRAAAPPQPPRPAVRADNVPGAGRQGNDNVAAGEGQPGGENENLLGNDVNRVGENEQAVEPGAADAGNRWWGIAKEIQMIVFGFITSLLPGFHNID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78593" PGL_stop="76807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78593" e_stop="78422"/>
            <exon e_start="77334" e_stop="77195"/>
            <exon e_start="77105" e_stop="76807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78593" e_stop="78422" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78421" i_stop="77335" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77334" e_stop="77195" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77194" i_stop="77106" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="77105" e_stop="76807" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78593" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78576" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78564" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78563" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78550" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78550" stop="78422"/>
              <exon start="77334" stop="77195"/>
              <exon start="77105" stop="76854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78534" stop="78422"/>
              <exon start="77334" stop="77202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATCTCTCTTCTTCTTCCCCACACACACATCAGAGGAGCAAAATCTTCTCTTTCAAGCAGTAGCCATGGCGAAACGTTTGATTCCAACAATTAACAGGGTTTTGATTGAGAAAATCACAGCTCCTGCTAAAACAAGTGCCGGTATTCTTCTCCCTGAGAAGTCTGCTAAG : CTGAATTCTGGGAAAGTGGTGGCTGTTGGGCCAGGACTTCATGACAAGACAGGGAACTTAATCCCTACTGCTGTCAAGGAAGGTGACACCGTCTTGTTGCCCGAGTACGGTGGTACTCAAGTCAAGTTGGGGGAGAAAGA : GTATCATTTGTACCGGGATGAAGACATTTTGGGGACACTGCACGACTGAGCATCTATAACGTTTGAGTTTTCATTCACACTGTTGAGGTTTATTTAAGGAGGTTGGGGAGGTTAATTTCAAGAATGTTTTTGGTTTAAGCACTCGAATCGTTAGTTGAATAACTGTTCTTTTAGTATTGTGCAATTGAGGAGACTGGGGCTAACACATTATGTTTTATGGCAAATGCCAATGGTGTTCAATTAAAAAATGATGACACTATTTTCTACCTTTAGCTTCTGAATCCAGCTCATGGTAAAGG</gDNA_template>
            <first_frame> S  I  S  L  L  L  P  H  T  H  I  R  G  A  K  S  S  L  S  S  S  S  H  G  E  T  F  D  S  N  N  *  Q  G  F  D  *  E  N  H  S  S  C  *  N  K  C  R  Y  S  S  P  *  E  V  C  *   : A  E  F  W  E  S  G  G  C  W  A  R  T  S  *  Q  D  R  E  L  N  P  Y  C  C  Q  G  R  *  H  R  L  V  A  R  V  R  W  Y  S  S  Q  V  G  G  E  R  :  V  S  F  V  P  G  *  R  H  F  G  D  T  A  R  L  S  I  Y  N  V  *  V  F  I  H  T  V  E  V  Y  L  R  R  L  G  R  L  I  S  R  M  F  L  V  *  A  L  E  S  L  V  E  *  L  F  F  *  Y  C  A  I  E  E  T  G  A  N  T  L  C  F  M  A  N  A  N  G  V  Q  L  K  N  D  D  T  I  F  Y  L  *  L  L  N  P  A  H  G  K   </first_frame>
            <second_frame>  Q  S  L  F  F  F  P  T  H  T  S  E  E  Q  N  L  L  F  Q  A  V  A  M  A  K  R  L  I  P  T  I  N  R  V  L  I  E  K  I  T  A  P  A  K  T  S  A  G  I  L  L  P  E  K  S  A  K  :  L  N  S  G  K  V  V  A  V  G  P  G  L  H  D  K  T  G  N  L  I  P  T  A  V  K  E  G  D  T  V  L  L  P  E  Y  G  G  T  Q  V  K  L  G  E  K  E :   Y  H  L  Y  R  D  E  D  I  L  G  T  L  H  D  *  A  S  I  T  F  E  F  S  F  T  L  L  R  F  I  *  G  G  W  G  G  *  F  Q  E  C  F  W  F  K  H  S  N  R  *  L  N  N  C  S  F  S  I  V  Q  L  R  R  L  G  L  T  H  Y  V  L  W  Q  M  P  M  V  F  N  *  K  M  M  T  L  F  S  T  F  S  F  *  I  Q  L  M  V  K  </second_frame>
            <third_frame>   N  L  S  S  S  S  P  H  T  H  Q  R  S  K  I  F  S  F  K  Q  *  P  W  R  N  V  *  F  Q  Q  L  T  G  F  *  L  R  K  S  Q  L  L  L  K  Q  V  P  V  F  F  S  L  R  S  L  L  S :   *  I  L  G  K  W  W  L  L  G  Q  D  F  M  T  R  Q  G  T  *  S  L  L  L  S  R  K  V  T  P  S  C  C  P  S  T  V  V  L  K  S  S  W  G  R  K   : S  I  I  C  T  G  M  K  T  F  W  G  H  C  T  T  E  H  L  *  R  L  S  F  H  S  H  C  *  G  L  F  K  E  V  G  E  V  N  F  K  N  V  F  G  L  S  T  R  I  V  S  *  I  T  V  L  L  V  L  C  N  *  G  D  W  G  *  H  I  M  F  Y  G  K  C  Q  W  C  S  I  K  K  *  *  H  Y  F  L  P  L  A  S  E  S  S  S  W  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78592" stop="78422"/>
                    <exon start="77334" stop="77195"/>
                    <exon start="77105" stop="77057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLFFFPTHTSEEQNLLFQAVAMAKRLIPTINRVLIEKITAPAKTSAGILLPEKSAKLNSGKVVAVGPGLHDKTGNLIPTAVKEGDTVLLPEYGGTQVKLGEKEYHLYRDEDILGTLHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81623" PGL_stop="82789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81623" e_stop="82789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="81623" e_stop="82789" e_length="1167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81623" stop="82351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81623" stop="82225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81623" stop="82179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81623" stop="82175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82108" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82239" stop="82789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCATCGCGTCTCTCCCCCACGCTCTCTCACTCTCTCCTCCGCGACCTCTCTCATCGCGTCTCTCCCCACGCTCTTCTCCCTTCCACCCTCCTCTTCGCGTGAACAAGACGGAATGGCGGAGACCCACACCCTGCCGCTGTCGAGCAGGTCTGCAACACGCAAGTCGTCACTGTCGTCCTCGCAAGCACGCAATGTTGACCATGTGGGTTTTGACCCAAAAGGGATTTGATTTTCGAAAAAAGAGGGGTTCTGCCAAGCCTCGAATAAAACCCAAAATTTCTCCCTCTATATAAACCCTTCCGTCCTTAAGAAAAAGGGGGATTTTGTTCAAAATTTCAGAGAAGTAGAACTTGGTTTGGAATTTCGAGCGAAATTTTAATTGGAACTTTGTCGAAAACTTCGTTTGTTCGTCTGTTGTTGGAATTTTAGTCGAAAGATTATTGGAAAGGTTTTGAAGGAAACTTTCGAGTTCTTTCTTTATTTTAGAAGAGTAGTCGGTAGTTGTTCTCAACCGGAAAGATTTTCTTTTGTTGTGTGCGTTCCACTATCGGTTTCGTAAGAACAGAAGAGAGGGAGAGATTCACGTAGCTCAGGAGACTGAAGTCACGATTCTGTCCCCTTTGCTTGTCGGGTCGTTTTCAAAACAGTTTGGAGCTCATTTCGGTCGTGGAAGCTCGTCCCTGCTCTGTTCCTCGTCTCAGCATGTTGTTTCAATCATGAAGTCGCTTCTGATTATTACGTTATCCATCGTTTTTCCTTCTTTCTTCGTGTTCATGGATGCTGGTTCGTTTGTTATTGCATTCGTTATGATATTCTTTTGTTTCATGACATGTAAATGATTTTTCTCTTGTCTGGCTGTTTTTGGGATTTTGTGAGTGATGATAGTTCTTCGATAGTAGTTCGGAATAGTTGTAATCGATGTGGATTTTCTTGTTTGTTTAGCTGTTTATGGGTAGGTCATTGTTTCTACATTGAATGACCGATATATGGAGATTTTCATTGTCGGCGTTTCGCAGGAATGCAGGCCTCGCCTTTTCGCTTAATCTCTAATATAGTGAAATTTGGATTTCATCTGTTTGTCTATCAAGCTTTCAAATAGGAATCCTTTCAGCATGTTTCGTCGTTGTATCATAATAGTCTGATAAGGAAGATATGTTTGTTCTT</gDNA_template>
            <first_frame> S  S  S  R  L  S  P  T  L  S  H  S  L  L  R  D  L  S  H  R  V  S  P  H  A  L  L  P  S  T  L  L  F  A  *  T  R  R  N  G  G  D  P  H  P  A  A  V  E  Q  V  C  N  T  Q  V  V  T  V  V  L  A  S  T  Q  C  *  P  C  G  F  *  P  K  R  D  L  I  F  E  K  R  G  V  L  P  S  L  E  *  N  P  K  F  L  P  L  Y  K  P  F  R  P  *  E  K  G  G  F  C  S  K  F  Q  R  S  R  T  W  F  G  I  S  S  E  I  L  I  G  T  L  S  K  T  S  F  V  R  L  L  L  E  F  *  S  K  D  Y  W  K  G  F  E  G  N  F  R  V  L  S  L  F  *  K  S  S  R  *  L  F  S  T  G  K  I  F  F  C  C  V  R  S  T  I  G  F  V  R  T  E  E  R  E  R  F  T  *  L  R  R  L  K  S  R  F  C  P  L  C  L  S  G  R  F  Q  N  S  L  E  L  I  S  V  V  E  A  R  P  C  S  V  P  R  L  S  M  L  F  Q  S  *  S  R  F  *  L  L  R  Y  P  S  F  F  L  L  S  S  C  S  W  M  L  V  R  L  L  L  H  S  L  *  Y  S  F  V  S  *  H  V  N  D  F  S  L  V  W  L  F  L  G  F  C  E  *  *  *  F  F  D  S  S  S  E  *  L  *  S  M  W  I  F  L  F  V  *  L  F  M  G  R  S  L  F  L  H  *  M  T  D  I  W  R  F  S  L  S  A  F  R  R  N  A  G  L  A  F  S  L  N  L  *  Y  S  E  I  W  I  S  S  V  C  L  S  S  F  Q  I  G  I  L  S  A  C  F  V  V  V  S  *  *  S  D  K  E  D  M  F  V  L </first_frame>
            <second_frame>  P  H  R  V  S  P  P  R  S  L  T  L  S  S  A  T  S  L  I  A  S  L  P  T  L  F  S  L  P  P  S  S  S  R  E  Q  D  G  M  A  E  T  H  T  L  P  L  S  S  R  S  A  T  R  K  S  S  L  S  S  S  Q  A  R  N  V  D  H  V  G  F  D  P  K  G  I  *  F  S  K  K  E  G  F  C  Q  A  S  N  K  T  Q  N  F  S  L  Y  I  N  P  S  V  L  K  K  K  G  D  F  V  Q  N  F  R  E  V  E  L  G  L  E  F  R  A  K  F  *  L  E  L  C  R  K  L  R  L  F  V  C  C  W  N  F  S  R  K  I  I  G  K  V  L  K  E  T  F  E  F  F  L  Y  F  R  R  V  V  G  S  C  S  Q  P  E  R  F  S  F  V  V  C  V  P  L  S  V  S  *  E  Q  K  R  G  R  D  S  R  S  S  G  D  *  S  H  D  S  V  P  F  A  C  R  V  V  F  K  T  V  W  S  S  F  R  S  W  K  L  V  P  A  L  F  L  V  S  A  C  C  F  N  H  E  V  A  S  D  Y  Y  V  I  H  R  F  S  F  F  L  R  V  H  G  C  W  F  V  C  Y  C  I  R  Y  D  I  L  L  F  H  D  M  *  M  I  F  L  L  S  G  C  F  W  D  F  V  S  D  D  S  S  S  I  V  V  R  N  S  C  N  R  C  G  F  S  C  L  F  S  C  L  W  V  G  H  C  F  Y  I  E  *  P  I  Y  G  D  F  H  C  R  R  F  A  G  M  Q  A  S  P  F  R  L  I  S  N  I  V  K  F  G  F  H  L  F  V  Y  Q  A  F  K  *  E  S  F  Q  H  V  S  S  L  Y  H  N  S  L  I  R  K  I  C  L  F   </second_frame>
            <third_frame>   L  I  A  S  L  P  H  A  L  S  L  S  P  P  R  P  L  S  S  R  L  S  P  R  S  S  P  F  H  P  P  L  R  V  N  K  T  E  W  R  R  P  T  P  C  R  C  R  A  G  L  Q  H  A  S  R  H  C  R  P  R  K  H  A  M  L  T  M  W  V  L  T  Q  K  G  F  D  F  R  K  K  R  G  S  A  K  P  R  I  K  P  K  I  S  P  S  I  *  T  L  P  S  L  R  K  R  G  I  L  F  K  I  S  E  K  *  N  L  V  W  N  F  E  R  N  F  N  W  N  F  V  E  N  F  V  C  S  S  V  V  G  I  L  V  E  R  L  L  E  R  F  *  R  K  L  S  S  S  F  F  I  L  E  E  *  S  V  V  V  L  N  R  K  D  F  L  L  L  C  A  F  H  Y  R  F  R  K  N  R  R  E  G  E  I  H  V  A  Q  E  T  E  V  T  I  L  S  P  L  L  V  G  S  F  S  K  Q  F  G  A  H  F  G  R  G  S  S  S  L  L  C  S  S  S  Q  H  V  V  S  I  M  K  S  L  L  I  I  T  L  S  I  V  F  P  S  F  F  V  F  M  D  A  G  S  F  V  I  A  F  V  M  I  F  F  C  F  M  T  C  K  *  F  F  S  C  L  A  V  F  G  I  L  *  V  M  I  V  L  R  *  *  F  G  I  V  V  I  D  V  D  F  L  V  C  L  A  V  Y  G  *  V  I  V  S  T  L  N  D  R  Y  M  E  I  F  I  V  G  V  S  Q  E  C  R  P  R  L  F  A  *  S  L  I  *  *  N  L  D  F  I  C  L  S  I  K  L  S  N  R  N  P  F  S  M  F  R  R  C  I  I  I  V  *  *  G  R  Y  V  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82120" stop="82464"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVVVLNRKDFLLLCAFHYRFRKNRREGEIHVAQETEVTILSPLLVGSFSKQFGAHFGRGSSSLLCSSSQHVVSIMKSLLIITLSIVFPSFFVFMDAGSFVIAFVMIFFCFMTCK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0163M22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81625" stop="81918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIASLPHALSLSPPRPLSSRLSPRSSPFHPPLRVNKTEWRRPTPCRCRAGLQHASRHCRPRKHAMLTMWVLTQKGFDFRKKRGSAKPRIKPKISPSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 205 chains have been computed
$ 
$ memory statistics:
$ 295432 bytes spliced alignments in total
$ 137 spliced alignments have been stored
$ 2156 bytes was the average size of a spliced alignment
$ 19680 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1968 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 227 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:06:42
-->
