<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:55:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0165I16-BkH7M/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0165I16-BkH7M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0165I16-BkH7M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1769" ref_strand="+" ref_description="SGN-M1769 T1110 [cos_markers]">
      <seq>aaaaaagatgaagaaagaagaagaacagctgaattgaagaatagcttggaaggatacatatatgatacgagagacaagcttgaatctggagattttgtgacaatatcaaccagtcaagagcgccagtcctttattcagaaacttgatgaggtacaagaatggttgtacacagatggtgaagatgcttttgccaagcagtttcaagaacatttagataagttgaaagctattggggatcccatatttttcagacataaagaacttgctgcacgccctgcttcatctgatcatgctcgcaaataccttaatgaagtgcaacagattgtgcgtggatgggaaaccaacaaatcgtggctttctaagggaaaaatagatgaagttctaaatgaatctgtaaaagtgaagaattggttaaatcagaaggaggctgaacagaaaaacactcctggatccgacaagcctgcatttacttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0165I16-BkH7M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0165I16.1" temp_strand="+" temp_description="C07HBa0165I16.1  AC217497.1 htgs_phase:2 submitted_to_sgn_as:gi|167832399|gb|AC217497.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0165I16, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="23287" stop="26823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23587" g_stop="23664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23665" i_stop="24167" i_length="503">
            <donor d_prob="0.630" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24168" g_stop="24239" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="150" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24240" i_stop="24309" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24310" g_stop="24410" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="251" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24411" i_stop="24504" i_length="94">
            <donor d_prob="0.688" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24505" g_stop="24574" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="321" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24575" i_stop="25403" i_length="829">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25404" g_stop="25460" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25461" i_stop="25566" i_length="106">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.893" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25567" g_stop="25628" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="440" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25629" i_stop="26485" i_length="857">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26486" g_stop="26523" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="478" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0165I16.1" gen_strand="+" ref_id="SGN-M1769" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0165I16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23587" e_stop="23664"/>
          <exon e_start="24168" e_stop="24239"/>
          <exon e_start="24310" e_stop="24410"/>
          <exon e_start="24505" e_stop="24574"/>
          <exon e_start="25404" e_stop="25460"/>
          <exon e_start="25567" e_stop="25628"/>
          <exon e_start="26486" e_stop="26523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGATGAAGAAAGAAGAAGAACAGCTGAATTGAAGAATAGCTTGGAAGGATACATATATGATACGAGAGACAAGGTTCGAGGGCTTATATCTCTAACTCTTGCTCATGCCTGTGATTATGTAGTTACCTGATCTGTTCAGCTCTGTAAACTTGAATGCCTTGTGTGTACTCTTGATTTTCTCATTTTTCGTTCCAGTTGCATACACTTGTTCGATTTGTTAATATGTGTTTTTCCTCTAGCTTTGAGTAACGGCTTTGCAGCTAGACAAATCTTTCTTGCAATAGCTTTTAAGCACATACCCATGCTTCAAGATTCTCCTGAAACATCATTTTGTTAAACTGATGCTTACACAGATGCAGAACTTACTTTGTTGCTCAGGTGATATTGTTTCCTAGATGTTACAACCTTGTGATCACTGTTAGCTTCTTGGTCTCTTTTTCTTCTTGTAATGCACTTCATATCATTTAGCTTCCAGTGGCATCACTGTTTTGCACCAACATTTTTATTCGCTGATTGATCACATGGAACTGATTAATTGATCACTTTTTTTTAATGGTGAATGTGCTCATGTACCAGCTTGAATCTGGAGATTTTGTGACAATATCAACCAGTCAAGAGCGCCAGTCCTTTATTCAGAAACTTGATGAGGTTTGCATATTTCCTTTTTTCCATGTTTTGTCATGTGTTTATCTTAAATATACTAAATGGAGTTTTTCAGGTACAAGAATGGTTGTACACAGATGGTGAAGATGCTTCTGCCAAGCAGTTTCAAGAACATTTAGATAAGTTGAAAGCTATTGGGGATCCCATATTTTTCAGGTCTGCTCCTAGTATCAACTGCAGACAAAGGCTAAATTGTAGTTACCTTTTGTACATGGTTCGGTAGTTATGCTGAATGTAATTTTTAATGCAGACATAAAGAACTTGCTGCACGCCCTGCTTCATCTGATCATGCTCGCAAATACCTTAATGAAGTGCAACAGGTAGGAAGTTTAATTTCTTGTTCCCGTAACACTCTTCTGCTCTATTTGGTCAAACTCTTTGCATCATGAAGTGCATTTTGTTAGTTGAAAGAGTGTCTTATTTGTGTTATGGTGGTATCTATAGATAGCTGGACATAAATAGGACTCCCTCCGTGTCAATTCGTTTGTCTTGCGTTAGATCTGTTTCAAAAAGAATGTTTTTCTTTATTCAGTTACTCTTTACACCCAATATCATACATGGCATATTTAAGATCACAAATTCATAGGGCGTTTTGGTACATTACACATATTTAGTTTAAGACCACCAAATTCTAAATTTTTCTTTATTTTCTCAAACTCCGTGCCGAGTCAAACTAAGACAAGCAAATTGAAACAGAGGGAGTATCTCTTTGTTTGTTTTCTCAAGGAAATGGTGAAATTAGTATGTTTAAGAAAAAACTACTAGTTTGCACCAGCACAGCGAATTGTAAGTCGGCAGTGAAGTTCTTCAAGCGAAGATGTGGGAAAATAAGCTGTATGTTTTGAGGCACTGTTTGAGGTGATAATTCCCATGGGTATTTTCTAGATTTGAAGTGCAGAAGGCATATTGATGAAATTGATATTAACCTGCATCTGTATTTTAGAGATTTCACATTTGGTACCATAACAGTCATTGTGGCATTAGTAGAAGATTCAACTACACTGTTGATGTTGAACTTATTAACTGGCTTCCTTTGCAATAATCCTTCTGTGATTTTCAAAGCTTGTTAGCCAGCTAGGGAAGTTTTGTATCTTTTATTGCCTTTGACCCTTGCAGTTAACCTTTTATTTCTTTCTTGGATACCTTCAGATTGTGCGTGGATGGGAAACCAACAAATCGTGGCTTCCTAAGGGAAAAATAGATGAGGTACTCTTTTCAGTTGTTGTGCATATTTCTGATTTTATAAATAGAAGCTAAGGCATCTCTTCTTTATGTTCGTACCGGGGAAGTTTTAAAAGGGTCATGTTTGCAGGTTCTAAATGAATCTGAGAAAGTGAAGAATTGGTTAAATCAGAAGGAGGCTGAACAGAAAAAGTAAGTTCTTTTTCTTTCTCATTTCTCTTACCTGTTTCCTATTTTCATATGGTCATTTGTGCGTTCACTTTCCATGTTATTGCCTCTCCCCTTTTTCTTTTCGTACTTACTCTGTTTGTTTCCACTGCCGCTTTAAGCAGTGAACATAGCGAGTTGTTTCCTGTTGGAACATCTTGTTCAATAAAATATTGAGCCATTGAACTCCCGAAAGTGATCCTGACTGATATATCATCTGTAAAGAATAAATCTAGTGGATACGTGTGTGTGTGTTGAAGCATATACACTTTGATTTGAACATTTGCAAATTGTATATACACGTGTTTGTGTATTCTTAGTTGTTTCTGTATTTCGTTCAACTGAATTAGGAGGGAGAAAGGTGGAACTTTGTAGTTTTTTCATTTAACATTTGCCCTATTCATTTGGGACCTTAGAATGAAAGATATATGGAGAGACTAGAAAAATGAAGAAAATGAGTGTTCTAAGATGTTGCCCCCTGGGAATTTTGTTCAGTGACAAGGACCCATCACATGCCGTGTGCGTTAGCTGTAGGGTGCGATGTGGCTAGAGCTGTTATACCTACAATTTCTGGTGGCAAAATAATACTTTGCTGGCTGGTTCTCCACCCCCCCCATCCATAATAGTATTACCTAGAATTTCCGTATAATATTATTGGGTCATGGGTATAAAATTATTTTCCATATATCCTACTGTCTGGCTTGCAAGTTTGAGAAAGTCCACTCTATTCTATAAATGTTGTTTTAAGAAAATTTTTATTCTGTTTTTGAAACTGAAAATATTGCTACCACCTTTTTATCCCCTTTCTCATACACACTGTTACATCTTTTCTTTTCCTACAGCACTCCTGGATCCGACAAGCCTGCATTTACTTCTGAAG</genome_strand>
        <mrna_strand>AAAAAAGATGAAGAAAGAAGAAGAACAGCTGAATTGAAGAATAGCTTGGAAGGATACATATATGATACGAGAGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAATCTGGAGATTTTGTGACAATATCAACCAGTCAAGAGCGCCAGTCCTTTATTCAGAAACTTGATGAG......................................................................GTACAAGAATGGTTGTACACAGATGGTGAAGATGCTTTTGCCAAGCAGTTTCAAGAACATTTAGATAAGTTGAAAGCTATTGGGGATCCCATATTTTTCAG..............................................................................................ACATAAAGAACTTGCTGCACGCCCTGCTTCATCTGATCATGCTCGCAAATACCTTAATGAAGTGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCGTGGATGGGAAACCAACAAATCGTGGCTTTCTAAGGGAAAAATAGATGAA..........................................................................................................GTTCTAAATGAATCTGTAAAAGTGAAGAATTGGTTAAATCAGAAGGAGGCTGAACAGAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCCTGGATCCGACAAGCCTGCATTTACTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23587" PGL_stop="26523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23587" e_stop="23664"/>
            <exon e_start="24168" e_stop="24239"/>
            <exon e_start="24310" e_stop="24410"/>
            <exon e_start="24505" e_stop="24574"/>
            <exon e_start="25404" e_stop="25460"/>
            <exon e_start="25567" e_stop="25628"/>
            <exon e_start="26486" e_stop="26523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.630" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.688" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.893" e_score="0.965"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.968"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23587" e_stop="23664" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.630" acc_prob="0.960">
            <gDNA_intron_boundary i_start="23665" i_stop="24167" i_length="503"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24168" e_stop="24239" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24240" i_stop="24309" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="24310" e_stop="24410" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.688" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24411" i_stop="24504" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24505" e_stop="24574" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="24575" i_stop="25403" i_length="829"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="25404" e_stop="25460" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.893">
            <gDNA_intron_boundary i_start="25461" i_stop="25566" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.968">
            <gDNA_exon_boundary e_start="25567" e_stop="25628" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="25629" i_stop="26485" i_length="857"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26486" e_stop="26523" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23587" stop="23664"/>
              <exon start="24168" stop="24239"/>
              <exon start="24310" stop="24410"/>
              <exon start="24505" stop="24574"/>
              <exon start="25404" stop="25460"/>
              <exon start="25567" stop="25628"/>
              <exon start="26486" stop="26523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGATGAAGAAAGAAGAAGAACAGCTGAATTGAAGAATAGCTTGGAAGGATACATATATGATACGAGAGACAAG : CTTGAATCTGGAGATTTTGTGACAATATCAACCAGTCAAGAGCGCCAGTCCTTTATTCAGAAACTTGATGAG : GTACAAGAATGGTTGTACACAGATGGTGAAGATGCTTCTGCCAAGCAGTTTCAAGAACATTTAGATAAGTTGAAAGCTATTGGGGATCCCATATTTTTCAG : ACATAAAGAACTTGCTGCACGCCCTGCTTCATCTGATCATGCTCGCAAATACCTTAATGAAGTGCAACAG : ATTGTGCGTGGATGGGAAACCAACAAATCGTGGCTTCCTAAGGGAAAAATAGATGAG : GTTCTAAATGAATCTGAGAAAGTGAAGAATTGGTTAAATCAGAAGGAGGCTGAACAGAAAAA : CACTCCTGGATCCGACAAGCCTGCATTTACTTCTGAAG</gDNA_template>
            <first_frame> K  K  D  E  E  R  R  R  T  A  E  L  K  N  S  L  E  G  Y  I  Y  D  T  R  D  K  :  L  E  S  G  D  F  V  T  I  S  T  S  Q  E  R  Q  S  F  I  Q  K  L  D  E  :  V  Q  E  W  L  Y  T  D  G  E  D  A  S  A  K  Q  F  Q  E  H  L  D  K  L  K  A  I  G  D  P  I  F  F  R :   H  K  E  L  A  A  R  P  A  S  S  D  H  A  R  K  Y  L  N  E  V  Q  Q  :  I  V  R  G  W  E  T  N  K  S  W  L  P  K  G  K  I  D  E  :  V  L  N  E  S  E  K  V  K  N  W  L  N  Q  K  E  A  E  Q  K  N :   T  P  G  S  D  K  P  A  F  T  S  E  </first_frame>
            <second_frame>  K  K  M  K  K  E  E  E  Q  L  N  *  R  I  A  W  K  D  T  Y  M  I  R  E  T  S :   L  N  L  E  I  L  *  Q  Y  Q  P  V  K  S  A  S  P  L  F  R  N  L  M  R :   Y  K  N  G  C  T  Q  M  V  K  M  L  L  P  S  S  F  K  N  I  *  I  S  *  K  L  L  G  I  P  Y  F  S   : D  I  K  N  L  L  H  A  L  L  H  L  I  M  L  A  N  T  L  M  K  C  N  R :   L  C  V  D  G  K  P  T  N  R  G  F  L  R  E  K  *  M  R :   F  *  M  N  L  R  K  *  R  I  G  *  I  R  R  R  L  N  R  K   : T  L  L  D  P  T  S  L  H  L  L  L  K </second_frame>
            <third_frame>   K  R  *  R  K  K  K  N  S  *  I  E  E  *  L  G  R  I  H  I  *  Y  E  R  Q   : A  *  I  W  R  F  C  D  N  I  N  Q  S  R  A  P  V  L  Y  S  E  T  *  *   : G  T  R  M  V  V  H  R  W  *  R  C  F  C  Q  A  V  S  R  T  F  R  *  V  E  S  Y  W  G  S  H  I  F  Q  :  T  *  R  T  C  C  T  P  C  F  I  *  S  C  S  Q  I  P  *  *  S  A  T   : D  C  A  W  M  G  N  Q  Q  I  V  A  S  *  G  K  N  R  *   : G  S  K  *  I  *  E  S  E  E  L  V  K  S  E  G  G  *  T  E  K  :  H  S  W  I  R  Q  A  C  I  Y  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0165I16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23587" stop="23664"/>
                    <exon start="24168" stop="24239"/>
                    <exon start="24310" stop="24410"/>
                    <exon start="24505" stop="24574"/>
                    <exon start="25404" stop="25460"/>
                    <exon start="25567" stop="25628"/>
                    <exon start="26486" stop="26522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKDEERRRTAELKNSLEGYIYDTRDKLESGDFVTISTSQERQSFIQKLDEVQEWLYTDGEDASAKQFQEHLDKLKAIGDPIFFRHKELAARPASSDHARKYLNEVQQIVRGWETNKSWLPKGKIDEVLNESEKVKNWLNQKEAEQKNTPGSDKPAFTSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5720 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:55:23
-->
