<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:42:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617151" ref_strand="+" ref_description="SGN-E617151 [90625]">
      <seq>acttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttgggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcatttatttttttgggatgttccgaggtattatttcttcactggctatgttgtagtgatggaaaaggcaatagatctagttcaggtttaggataggcagcaggcacaactggaggatcactgtccaggtcacaaatcgtggatcgtttcatgtcaatcactgacttggaattgcgatttagatagctgaagaagtaagcatattacattaatactagttcgttcgtttgttgcagtgtttgccatatggtcatttactgatagaaatgctttaattcattgtacattggagtaaggtgggactagtctttggagttttggttatttttacttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="938" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="638" g_stop="56" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E617151" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="638" e_stop="56"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTT</genome_strand>
        <mrna_strand>ACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTGGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTCACTGGCTATGTTGTAGTGATGGAAAAGGCAATAGATCTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACAAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTGCAGTGTTTGCCATATGGTCATTTACTGATAGAAATGCTTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466639" ref_strand="+" ref_description="SGN-E466639 [cPRO-25-I18]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcactcatcaattggagtcactgcttcatttatttttttgggaatgtccgaggtattatttctcactggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="1253" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="950" g_stop="285" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="665" r_length="659" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E466639" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="950" e_stop="285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCGAATAGTCATTATTTTTCCTGATTCCGTTTAATACCCTTTTTCCCAAAGTCCGGCAACAAACTTCACGAGTTCGGGGTGACCTTCCCTGCATCAGCAATGCATTTCAAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACTTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTCGCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTAT</genome_strand>
        <mrna_strand>GCTTGCAGAATAGTCAT-ATTTCTGCTGATTCATTGTATAACCCTTCT-CGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACAT-CCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGC-ACTCATCAATTGGAGTC-ACTGCTTCATTTATTTTTTTGGGAATGTCCGAGGTATTATTTC-TCACTGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435604" ref_strand="+" ref_description="SGN-E435604 [STM-61-F24]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaaagtggcaactcatcaattggagtncactgcttcatttatttttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="1253" stop="17"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="950" g_stop="317" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="636" r_length="630" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E435604" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="950" e_stop="317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCGAATAGTCATTATTTTTCCTGATTCCGTTTAATACCCTTTTTCCCAAAGTCCGGCAACAAACTTCACGAGTTCGGGGTGACCTTCCCTGCATCAGCAATGCATTTCAAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACTTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTCGCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGG</genome_strand>
        <mrna_strand>GCTTGCAGAATAGTCAT-ATTTCTGCTGATTCATTGTATAACCCTTCT-CGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACAT-CCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAAGTGGCAACTCATCAATTGGAGTNCACTGCTTCATTTATTTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466645" ref_strand="+" ref_description="SGN-E466645 [cPRO-25-K10]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="1253" stop="28"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="950" g_stop="328" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="625" r_length="619" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E466645" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="950" e_stop="328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCGAATAGTCATTATTTTTCCTGATTCCGTTTAATACCCTTTTTCCCAAAGTCCGGCAACAAACTTCACGAGTTCGGGGTGACCTTCCCTGCATCAGCAATGCATTTCAAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACTTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTCGCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTT</genome_strand>
        <mrna_strand>GCTTGCAGAATAGTCAT-ATTTCTGCTGATTCATTGTATAACCCTTCT-CGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACAT-CCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466715" ref_strand="+" ref_description="SGN-E466715 [cPRO-25-J12]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaanggcttgatatcgggtctcatttcgttgaactttaagtgggcactcatcaattggagtcaactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="1253" stop="33"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="950" g_stop="333" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="619" r_length="613" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E466715" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="950" e_stop="333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCGAATAGTCATTATTTTTCCTGATTCCGTTTAATACCCTTTTTCCCAAAGTCCGGCAACAAACTTCACGAGTTCGGGGTGACCTTCCCTGCATCAGCAATGCATTTCAAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACTTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTCGCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTT</genome_strand>
        <mrna_strand>GCTTGCAGAATAGTCAT-ATTTCTGCTGATTCATTGTATAACCCTTCT-CGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACAT-CCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAANGGCTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTGGGC-ACTCATCAATTGGAGTCAACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341561" ref_strand="+" ref_description="SGN-E341561 [cTOE-23-H5]">
      <seq>gactcttttttctctcttcaacaaacaccaattcataggatttcttaagataaaattttctagatcttgaagaaagttatttgttgcaagtttcaattataaagagagaagatgtcatcgtcatctgaagggaggtacaatttgtatagtcaaggtagtagtggatggacatcaatgaggaatgaagaatttcaagaagaagaaatttggggaaatttcattaacgaaagacgcgaatttagttcaaatttcaacagaaacaaagagtcgtcgtcaccaatttttagtcctaggaggcttcccaccgcagccaaaatgattcagagatcgagcaagagttcaattcaggaacctaaaataattcaacattcagctccagtaaacatacctgattggtcaaaaatttatggaacaaatttcaataaaaacttgtcacgtcgtgatgattttgattatgatgatgataattacgatggcggaggacataatttgacaaaaaatagttcgaaatttgatgaagaggacgatgatgacgacgacgacgacgatgaaggagaaatgatgcctccacatgaatggattgctaaaaaacttgaaagaagtaaaatatcttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="6681" stop="4912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6381" g_stop="6333" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6332" i_stop="6229" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6228" g_stop="6170" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="108" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6169" i_stop="5646" i_length="524">
            <donor d_prob="0.494" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5645" g_stop="5135" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="619" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E341561" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6381" e_stop="6333"/>
          <exon e_start="6228" e_stop="6170"/>
          <exon e_start="5645" e_stop="5135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTTTTTTCTCTCTTCAACAAACACCAATTCATAGGATTTCTTAAGGTAAAAAAAATAATATTTTTCTTTGCGTGTTTTAATTTCTCTAAATGATATTATTATTGGTTTTCTTTTGTTTTAATTATTTCTCTTTAATTTGTGTTTTGCAGATAAAATTTTCTAGATCTTGAAGAAAGTTATTTGTTGCAAGTTTCAATTATAAAGAGAGGTACATTTTGCAAATTTTAGTCAATGTTATTTGCTAGTTGTTGAAGCTTAAAGTATCGCTATTCAATAAAGATATTTTATTTTATTTTAGAATGAGATAATAATATCATATGTTAAAATTTATCTTTTTAAATGTTCTTACCTCGAGGAACTTGAAGTTTTTGATGCATATAGGTATTTTTTGTGGAAAGTTAACGTATAATTTCATTACCCGCTAAAAGAATTTTGTCAGTATTGATATAAACGACCTTTCCCTCGCATCTGGCTATAGCAAGAAGCACCAAATCTAGAGTTGGTTGTCGTTCTTAGTGAGTTGGTTGTCGTTCCACTAAGAGAGTTAGGTTTCTTAATATCAAATAATTAATTTTATGGGTTTGAATTTTTTCTAAAATTTCTAATTTTTATGTTTATTTCTCTATTGAAGGGAAAAATTCTAATAAAACCGGAGAAATGAGTGAACATAATTCTTTATATAAAATCACAAACTTATAAATTTTTCGATTAATTTTATTTTTTATTTCGCAGAAGATGTCATCGTCATCTGAAGGGAGGTACAATTTGTATAGTCAAGGTAGTAGTGGATGGACATCAATGAGGAATGAAGAATTTCAAGAAGAAGAAATTTGGGGAAATTTCATTAACGAAAGACGCGAATTTAGTTCAAATTTCAACAGAAACAAAGAGTCGTCGTCACCAATTTTTAGTCCTAGGAGGCTTCCCACCGCAGCCAAAATGATTCAGAGATCGAGCAAGAGTTCAATTCAGGAACCTAAAATAATTCAACATTCAGCTCCAGTAAACATACCTGATTGGTCAAAAATTTATGGAACAAATTTCAATAAAAACTTGTCACGTCGTGATGATTTTGATTATGATGATGATAATTACGATGGCGGAGGACATAATTTGACAAAAAATAGTTCGAAATTTGATGAAGAGGACGATGATGACGACGACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GACTCTTTTTTCTCTCTTCAACAAACACCAATTCATAGGATTTCTTAAG........................................................................................................ATAAAATTTTCTAGATCTTGAAGAAAGTTATTTGTTGCAAGTTTCAATTATAAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTCATCGTCATCTGAAGGGAGGTACAATTTGTATAGTCAAGGTAGTAGTGGATGGACATCAATGAGGAATGAAGAATTTCAAGAAGAAGAAATTTGGGGAAATTTCATTAACGAAAGACGCGAATTTAGTTCAAATTTCAACAGAAACAAAGAGTCGTCGTCACCAATTTTTAGTCCTAGGAGGCTTCCCACCGCAGCCAAAATGATTCAGAGATCGAGCAAGAGTTCAATTCAGGAACCTAAAATAATTCAACATTCAGCTCCAGTAAACATACCTGATTGGTCAAAAATTTATGGAACAAATTTCAATAAAAACTTGTCACGTCGTGATGATTTTGATTATGATGATGATAATTACGATGGCGGAGGACATAATTTGACAAAAAATAGTTCGAAATTTGATGAAGAGGACGATGATGACGACGACGACGACGATGAAGGAGAAATGATGCCTCCACATGAATGGATTGCTAAAAAACTTGAAAGAAGTAAAATATCTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302357" ref_strand="+" ref_description="SGN-E302357 [cLEW-27-G2]">
      <seq>gagagactagtctcgagtttttttttttacagttacaaaaatttaccagttatctcaccgacaatgtcatctctctgttgacaaaaaagagaaacaggtgtccaccattaaaagtataataagaaattagtactaacttagatggattcttgaacaaagtgctgtattgtgggtcttattttcttcaattccacatattcaacactttcttcttctatttcactcacctggggagcttctcccatgtgaaaatagaaaccccttttgttaaaaaaggattttttttttgaaatcttgaaattgctactgttttgggggttctttggttttttggggttgttgagttgggaactgaaatgggtgttgtttgaatttgttgttaattggtttaagcaatgaagaacacaatgaaaagtagaggaggaggcgaatcagctggaaaaggtgttttttctaggaaattgactgttcttctgtgtattggatgcttttgtgttgggatgctcttcactgacaggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="13528" stop="12428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13215" g_stop="12731" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="516" r_length="484" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12730" i_stop="12575" i_length="156">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12574" g_stop="12568" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="522" r_length="6" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="28" polyA_stop="17"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E302357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13215" e_stop="12731"/>
          <exon e_start="12574" e_stop="12568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAAAATTTACCAGTTATCTCACCGACAATGTCATCTCTCTGTTGACAAAAAAGAGAAACAGGTGTCCACCATTAAAAGTATAATAAGAAATTAGTACTAACTTAGATGGATTCTTGAACAAAGTGCTGTATTGTGGGTCTTATTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAGCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTTCTGTGTATTGGATGCTTTTGTGTTGGGATGCTCTTCACTGACAGGTTTTTTCATTTGATCTTTTTGTTTTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTATCTTCTCTTTTTTTTACAGCGGATGT</genome_strand>
        <mrna_strand>TTACAAAAATTTACCAGTTATCTCACCGACAATGTCATCTCTCTGTTGACAAAAAAGAGAAACAGGTGTCCACCATTAAAAGTATAATAAGAAATTAGTACTAACTTAGATGGATTCTTGAACAAAGTGCTGTATTGTGGGTCTTATTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAGCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTTCTGTGTATTGGATGCTTTTGTGTTGGGATGCTCTTCACTGACA-............................................................................................................................................................-GGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341252" ref_strand="+" ref_description="SGN-E341252 [cTOE-22-K22]">
      <seq>ttttcttcaattccacatattcaacactttcttcttctatttcactcacctggggagcttctcccatgtgaaaatagaaaccccttttgttaaaaaaggatttttttttttgaaatcttgaaattgctactgttttgggggttctttggttttttggggttgttgagttgggaactgaaatgggtgttgtttgaatttgttgttaattggtttaagcaatgaagaacacaatgaaaagtagaggaggaggcgaatcatctggaaaaggtgttttttctaggaaattgactgttcttctgtgtattggatgcttttgtgttgggatgctcttcactgacaggatgtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="13369" stop="12426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13069" g_stop="12731" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E341252" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13069" e_stop="12731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGA-TTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAGCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTTCTGTGTATTGGATGCTTTTGTGTTGGGATGCTCTTCACTGACAG</genome_strand>
        <mrna_strand>TTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCATCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTTCTGTGTATTGGATGCTTTTGTGTTGGGATGCTCTTCACTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235316" ref_strand="+" ref_description="SGN-E235316 [cLED-11-I20]">
      <seq>tcaccgacaatgtcatctctctgttgacaaaaaagagaaacaggtgtccaccattaaaagtataataagaaattagtactaacttagatggattcttgaacaaagtgctgtattgtgggtcttattttcttcaattccacatattcaacactttcttcttctatttcactcacctggggagcttctcccatgtgaaaatagaaaccccttttgttaaaaaaggattttttttttgaaatcttgaaattgctactgttttgggggttctttggttttttggggttgttgagttgggaactgaaatgggtgttgtttgaatttgttgttaattgggttaagcaatgaagaacacaatgaaaagtagaggaggaggcgaatcaactggaaaaggtgttttttctaggaaattgactgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="13493" stop="12475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13193" g_stop="12775" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E235316" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13193" e_stop="12775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGACAATGTCATCTCTCTGTTGACAAAAAAGAGAAACAGGTGTCCACCATTAAAAGTATAATAAGAAATTAGTACTAACTTAGATGGATTCTTGAACAAAGTGCTGTATTGTGGGTCTTATTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAGCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTT</genome_strand>
        <mrna_strand>TCACCGACAATGTCATCTCTCTGTTGACAAAAAAGAGAAACAGGTGTCCACCATTAAAAGTATAATAAGAAATTAGTACTAACTTAGATGGATTCTTGAACAAAGTGCTGTATTGTGGGTCTTATTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGGTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAACTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613123" ref_strand="+" ref_description="SGN-E613123 [62893]">
      <seq>gagaacgatgatgacgacgatgatgatgaaggcgaaatgatgcctccacatgaatggattgctaaaaaacttgaaaggagtaaaatatcttctttttcagtgtgtgaaggtgttggaagaacactaaaagggagagatttgagtagggtgagaaatgcaatattaagtaaaacagggttccttgaataacattagatcgaatgaatcgatagtgaagattcatatagtcgattctgatttatttatgagacataattattgttattgttgtattataatcgtgtagatgacgtggtgatagttgatgatcgtaagacatcaacaataggatttgattagtaattgaattaatatgtttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="18907" stop="17934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18611" g_stop="18235" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E613123" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18611" e_stop="18235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNATGATGACGACGACGACGACGATGAAGGAGAAATGATGCCTCCACATGAATGGATTGCTAAAAAACTTGAAAGAAGTAAAATATCTTCTTTTTCAGTGTGTGAAGGTGTTGGAAGAACACTAAAAGGGAGAGATTTGAGTAGGGTGAGAAATGCAATATTAAGTAAAACAGGGTTCCTTGAATAGCATTAGGTCAAATGAATCGATAGTGAAAGATTTATATAGTCGATTCTGATTTATTTATGAGATATAGTTATTATTGTTGTTGTTGTATTATAATCGTGTAGATGATGTGGTGATTGGTTGATGATCGTAAGACATCAATAATAGAATTTGATTAGTAATTGAATTAATATGTTTAATTAGAATTAACA</genome_strand>
        <mrna_strand>GAGAACGATGATGACGACGATGATGATGAAGGCGAAATGATGCCTCCACATGAATGGATTGCTAAAAAACTTGAAAGGAGTAAAATATCTTCTTTTTCAGTGTGTGAAGGTGTTGGAAGAACACTAAAAGGGAGAGATTTGAGTAGGGTGAGAAATGCAATATTAAGTAAAACAGGGTTCCTTGAATAACATTAGATCGAATGAATCGATAGTG-AAGATTCATATAGTCGATTCTGATTTATTTATGAGACATA---ATTATTGTTATTGTTGTATTATAATCGTGTAGATGACGTGGTGA-TAGTTGATGATCGTAAGACATCAACAATAGGATTTGATTAGTAATTGAATTAATATGTTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725070" ref_strand="+" ref_description="SGN-E725070 [FC25DH10]">
      <seq>ggttttcctttcgcacctcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaatttgaattctcattattgtttaccagtttgaagtcattcgattatcgaatgagcttgtagtgagatggaaaaatcgaaagattaatactcatgattcgaaagcatgaatatgaaaacctatatttgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20838" stop="19520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20539" g_stop="19821" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="754"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E725070" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20539" e_stop="19821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTCATGATTCGAAAGCATGAATATGAAAACCTATATTTGTG</genome_strand>
        <mrna_strand>GGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTCATGATTCGAAAGCATGAATATGAAAACCTATATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275425" ref_strand="+" ref_description="SGN-E275425 [cLEN-10-P15]">
      <seq>tcgttttcctttcgcacctcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaatttgaattctcattattgtttaccagtttgaagtcattcgattatcgaatgagcttgtagtgagatggaaaaatcgaaagattaatactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20840" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20540" g_stop="19849" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E275425" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20540" e_stop="19849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTCATGATTCGAA</genome_strand>
        <mrna_strand>TCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719375" ref_strand="+" ref_description="SGN-E719375 [FC07CF11]">
      <seq>tgagccttatcctacctctattcgttttcctttcgcacctcgaatccatcgccgtccaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacaatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaatttgaattctcattattgtttaccagtttgaagtcattcgattatcgaatgagcttgtagtgagatggaaaaatcgaaagattaatactcttttttttttnnnnaaaaaaaaagaggggaaaaaaaaaaaaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20861" stop="19553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20561" g_stop="19859" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="728"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E719375" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20561" e_stop="19859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCTTATCCTAGCTCAATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTC</genome_strand>
        <mrna_strand>TGAGCCTTATCCTACCTCTATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCCAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACAATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720722" ref_strand="+" ref_description="SGN-E720722 [FC11CF07]">
      <seq>gcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttaaattatgttatggagtttgagttcgaatttgaattctcattattgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20762" stop="19627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20462" g_stop="19924" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E720722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20462" e_stop="19924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCA</genome_strand>
        <mrna_strand>GCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAAATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729758" ref_strand="+" ref_description="SGN-E729758 [LA22AA09]">
      <seq>gttttcctttcgcacctcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaatttgaattctcnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20838" stop="19638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20538" g_stop="19938" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="619"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E729758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20538" e_stop="19938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTC</genome_strand>
        <mrna_strand>GTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724033" ref_strand="+" ref_description="SGN-E724033 [FC22DE01]">
      <seq>gagccttatcctagcccatttcgttttcctttcgcacctcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannttccccccccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20859" stop="19649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20560" g_stop="19950" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="653"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E724033" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20560" e_stop="19950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCTTATCCTAGCTCAATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGA</genome_strand>
        <mrna_strand>GAGCCTTATCCTAGCCCATTTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711733" ref_strand="+" ref_description="SGN-E711733 [FB02DC08]">
      <seq>cgattaatcacagcttcttcttcgccggcggcggctatggcctgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgcaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagtttgagttcgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20804" stop="19649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20509" g_stop="19950" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E711733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20509" e_stop="19950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGA</genome_strand>
        <mrna_strand>CGATTAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCCTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGCAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256762" ref_strand="+" ref_description="SGN-E256762 [cLEG-40-E13]">
      <seq>tcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaattttattcgattaatgtatgtctttgattttagattatgttatggagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20822" stop="19658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20522" g_stop="19958" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E256762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20522" e_stop="19958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTT</genome_strand>
        <mrna_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711946" ref_strand="+" ref_description="SGN-E711946 [FB03BH01]">
      <seq>cgctcaattcgttttcctttcgcacctcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgataatttcgttcaaaattaacgaaagtttacattttatagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20847" stop="19708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20548" g_stop="20009" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="550"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E711946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20548" e_stop="20009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCA</genome_strand>
        <mrna_strand>CGCTCAATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258187" ref_strand="+" ref_description="SGN-E258187 [cLEG-49-I8]">
      <seq>tcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaagatctatacctggagtttcattcgagcagatgaaattgcgaatcaaattaagtggtcctcggcctctacatcacactctaaatctggagaaagtgaaatcagtggttccttatggaagaatctccaatggtgagggcgttgatggcggattgatatgctcccgcggtggtccagttgaagaaatgggagataaaaatgacgattggtacatcgtcaacgctgctggctatggtgggtactgatccattttcccgaatattcgaataattgaactgataatttcgttccaaattaacgaaaggttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20822" stop="19716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20522" g_stop="20016" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E258187" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20522" e_stop="20016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTT</genome_strand>
        <mrna_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAAGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCGAATCAAATTAAGTGGTCCTCGGCCTCTACATCACACTCTAAATCTGGAGAAAGTGAAATCAGTGGTTCCTTATGGAAGAATCTCCAATGGTGAGGGCGTTGATGGCGGATTGATATGCTCCCGCGGTGGTCCAGTTGAAGAAATGGGAGATAAAAATGACGATTGGTACATCGTCAACGCTGCTGGCTATGGTGGGTACTGATCCATTTTCCCGAATATTCGAATAATTGAACTGATAATTTCGTTCCAAATTAACGAAAGGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259695" ref_strand="+" ref_description="SGN-E259695 [cLEG-42-B21]">
      <seq>tcgaatccatcgccgtcaaatcacagcttcttcttcgccggcggcggctatggcgtgtgtgcctaattcatcgatgactcttctcttcgtcgaaatgggcgtcggctacgatcaacacggtcaagacgtaacctcagctgctatgcgagcctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctatacctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatgacgattgttacatcgtcaacgctgctgtctatgttggttactgatccattttccagattattcgaatagttgaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20822" stop="19749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20522" g_stop="20049" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E259695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20522" e_stop="20049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGAT</genome_strand>
        <mrna_strand>TCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254782" ref_strand="+" ref_description="SGN-E254782 [cLEG-33-A4]">
      <seq>ctcgaatccatcgccgtcaaatcaccagcttcttcttcgccggcggcggctatggcgtgtgtgccctaattcatcgatgactcttctcttcgtcgaaatgggccgtcggctacgatcaacaccggtcaagaactaaccctcagctgctatgccgagccctgtaaaagtgcaatttcatccaattcaataccagcgtttagaagaggatctataccctggagtttcattcgagcagatgaaattgcaaatcaaattaggtgttcctcggcctctacatcacactctagatctggagaaagtgaaatcagtgtttccttatggaagaatctcgaatgttgaggtcgttgatggcggattgatatgctccagtggtgttcaagttgaagaaatgggagataaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="20823" stop="19828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20523" g_stop="20128" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E254782" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20523" e_stop="20128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAATCCATCGCCGTCAAATCA-CAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTG-CCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGG-CGTCGGCTACGATCAACA-CGGTCAAGACGTAA-CCTCAGCTGCTATG-CGAG-CCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATA-CCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATG</genome_strand>
        <mrna_strand>CTCGAATCCATCGCCGTCAAATCACCAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCCGTCGGCTACGATCAACACCGGTCAAGAACTAACCCTCAGCTGCTATGCCGAGCCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723605" ref_strand="+" ref_description="SGN-E723605 [FC21AB01]">
      <seq>gccactctttttgtcctttaattgtataccccaatttttttgttagatcattctcagatcaccatggccaaaagctccttcaaattggaacaccctcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaggctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggccatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagatgcttgcgttcgtttttcgtgttccttggtcacaaaaaatagtctgatggtatcctgtttcttcacattttcatgtgaaatattgaatttcaaagtgtcattttaggttaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27546" stop="23794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27365" g_stop="27341" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="156" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="328" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24101" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="686" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="734"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E723605" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27365" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTCGTGTTCCTTGGTCACAAAAAATAGTCTGATGGTATCCTGTTTCTTCACATTTTCATGTGAAATATTGAATTTCAAAGTGTCATTTTAGGTTATAA</genome_strand>
        <mrna_strand>GCCACTCTTTTTGTCCTTTAATTGT..............................................................................................ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTCGTGTTCCTTGGTCACAAAAAATAGTCTGATGGTATCCTGTTTCTTCACATTTTCATGTGAAATATTGAATTTCAAAGTGTCATTTTAGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722752" ref_strand="+" ref_description="SGN-E722752 [FC18AH06]">
      <seq>gggcgattggcggccaatcggccgaattgaaacgaagagaaaattctggatgcgttttccactctttttgtgatttgtttgtataccccaatttttttgttagatcattctcagatcaccagggccaaaagctccttcaaattggaacaccctcttgagaggcgacaggctgaagctgctcatatcagggagaagtaccctgatagaataccggtgattgttgagaaggctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggccatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcgaatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaataatctttctaccaagatgctgtctagggttgacattgactggattatgtagttacctttatgaagatgcttgcgttcgtttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27697" stop="23897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27393" g_stop="27341" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="82" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="213" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="266" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="385" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="649" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E722752" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27393" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGAGAAAATTTTGGATGCGTTTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTCG</genome_strand>
        <mrna_strand>AAACGAAGAGAAAATTCTGGATGCGTTTTCCACTCTTTTTGTGATTTGTTTGT..............................................................................................ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCAGGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCATATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGAATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATAATCTTTCTACCAAGATGCTGTCTAGGGTTGACATTGACTGGATTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716313" ref_strand="+" ref_description="SGN-E716313 [FB16CH01]">
      <seq>tttggatgcgttttcctctctttttgtgatttgtttgtataccccaatttttttgttagatcattctcagatcaccatggccaaaagctccttcaaattggaacaccctcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaggctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggccatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagatgcttgcgttcgtttttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27678" stop="23897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27378" g_stop="27341" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="169" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="222" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="341" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24196" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="604" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="623"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E716313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27378" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATGCGTTTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTC</genome_strand>
        <mrna_strand>TTTGGATGCGTTTTCCTCTCTTTTTGTGATTTGTTTGT..............................................................................................ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711485" ref_strand="+" ref_description="SGN-E711485 [FB02AE10]">
      <seq>ccgataaggccatttttatctttgtgaagaatatcctcccccccccagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagatgcttgcgttcgtttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="24891" stop="23897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24591" g_stop="24544" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24196" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="311" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="326"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E711485" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24591" e_stop="24544"/>
          <exon e_start="24458" e_stop="24196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTC</genome_strand>
        <mrna_strand>CCGATAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCCCCAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460189" ref_strand="+" ref_description="SGN-E460189 [cPRO-30-O17]">
      <seq>atacgccaattttttgttaatcattctcagatcaccatggccaaaagctccttcaaattggaacacccgcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaagctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggatggcttcctgtacatgacctacagtggcgagaatacattcggatccttttgaagtttcaagcagagaccttattactgtgtaaataagtctttaagaaaacttgtaaatacttacgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagttgctcatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27546" stop="23910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="129" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="182" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="301" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24458" g_stop="24202" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="557" r_length="256" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E460189" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGA-GACCGTACTGTGTAAATAACGC-TGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCG</genome_strand>
        <mrna_strand>ATACGCCAA-TTTTTTGTTA-ATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGCTTCCTGTACATGACCTACAGTGGCGAGAATACATTCGGATCCTTTTGAAGTTTCAAGCAGAGACCTTATTACTGTGTAAATAAGTCTTTAAGAAAACTTGT-AA-A-TACTTACGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGTTGCTCATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735134" ref_strand="+" ref_description="SGN-E735134 [LB14CB05]">
      <seq>atttgtttgtataccccaatttttttgttagatcattctcagatcaccatggccaaaagctccttcaaattggaacaccctcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaggctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggccatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagatgcttgcgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27546" stop="23904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27350" g_stop="27341" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="85" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="141" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="194" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="313" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24203" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="569" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="580"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E735134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27350" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTC</genome_strand>
        <mrna_strand>ATTTGTTTGT..............................................................................................ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230180" ref_strand="+" ref_description="SGN-E230180 [cLEL-33-H15](-)">
      <seq>gatctgactgttggacaatttgtgtatgttgttcgcaaaaggattaagctcagcgctaagaaggccatttttatctttgtgaagaatatcctccaccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagatgcttgcgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="24946" stop="23904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24646" g_stop="24544" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24458" g_stop="24203" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="359" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="375"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E230180" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24646" e_stop="24544"/>
          <exon e_start="24458" e_stop="24203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTC</genome_strand>
        <mrna_strand>GATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAAAGGATTAAGCTCAGCGCTAAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCACCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623579" ref_strand="-" ref_description="SGN-E623579 [88673]">
      <seq>ctttcactctctttgtgatttctttgaatacgccaattttttgttaatcattctcagatcaccatggccaaaagctccttcaaattggaacacccgcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaagctgaacgaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggatggcttcctgtacatgacctacagtggcgagaatacattcggatccttttgaagtttcaagcagagaccttattactgtgtaaataagtctttaagaaaacttgtaaatacttacgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagttgctcaaaaaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27557" stop="23910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27367" g_stop="27341" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="100" r_length="73" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="156" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="328" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24215" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="571" r_length="243" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E623579" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623579" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27367" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGA-GACCGTACTGTGTAAATAACGC-TGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</genome_strand>
        <mrna_strand>CTTTCACTCTCTTTGTGATTTCTTTGA..............................................................................................ATACGCCAA-TTTTTTGTTA-ATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAACGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGCTTCCTGTACATGACCTACAGTGGCGAGAATACATTCGGATCCTTTTGAAGTTTCAAGCAGAGACCTTATTACTGTGTAAATAAGTCTTTAAGAAAACTTGT-AA-A-TACTTACGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460036" ref_strand="+" ref_description="SGN-E460036 [cPRO-29-B22]">
      <seq>ctttcactctctttgtgatttctttgaatacgccaattttttgttaatcattctcagatcaccatggccaaaagctccttcaaattggaacacccgcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaagctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggatggcttcctgtacatgacctacagtggcgagaatacattcggatccttttgaagtttcaagcagagaccttattactgtgtaaataagtctttaagaaaacttgtaaatacttacgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaaagtgctcatttccccgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27557" stop="23910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27367" g_stop="27341" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="100" r_length="73" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="156" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="328" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24215" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="571" r_length="243" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="599"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E460036" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27367" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGA-GACCGTACTGTGTAAATAACGC-TGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</genome_strand>
        <mrna_strand>CTTTCACTCTCTTTGTGATTTCTTTGA..............................................................................................ATACGCCAA-TTTTTTGTTA-ATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGCTTCCTGTACATGACCTACAGTGGCGAGAATACATTCGGATCCTTTTGAAGTTTCAAGCAGAGACCTTATTACTGTGTAAATAAGTCTTTAAGAAAACTTGT-AA-A-TACTTACGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448913" ref_strand="+" ref_description="SGN-E448913 [cSTS-4-H6]">
      <seq>gtgatttctttgaatacgccaattttttgttaatcattctcagatcaccatggccaaaagctccttcaaattggaacacccgcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaagctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggatggcttcctgtacatgacctacagtggcgagaatacattcggatccttttgaagtttcaagcagagaccttattactgtgtaaataagtctttaagaaaacttgtaaatacttacgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaagttgctcatttcccgtttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27557" stop="23910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27353" g_stop="27341" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="86" r_length="73" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="142" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="195" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="314" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24215" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="557" r_length="243" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="587"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E448913" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27353" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGA-GACCGTACTGTGTAAATAACGC-TGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</genome_strand>
        <mrna_strand>GTGATTTCTTTGA..............................................................................................ATACGCCAA-TTTTTTGTTA-ATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGCTTCCTGTACATGACCTACAGTGGCGAGAATACATTCGGATCCTTTTGAAGTTTCAAGCAGAGACCTTATTACTGTGTAAATAAGTCTTTAAGAAAACTTGT-AA-A-TACTTACGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463258" ref_strand="-" ref_description="SGN-E463258 [cPRO-14-G13]">
      <seq>caaaagctccttcaaatgggaccacccgcttgagaggcgacaggctgaagctgctcgtatcagggagaagtaccctgatagaataccggtgattgttgagaaagctgaaagaagtgacatccctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggatggcttcctgtacatgacctacagtggcgagaatacctttggatccttttgaagtttcaagcagagaccttattactgtgtaaataagtcttaagaaaacttgtaaatacttacgttagcctactcttctgaattatctttctaccaagatgctgtcctgggttgacattgactggtttatgtagttacctttatgaagttgctcaaaaccaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27503" stop="23910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27203" g_stop="27172" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="88" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="141" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="260" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24458" g_stop="24215" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="502" r_length="242" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="536"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E463258" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463258" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27203" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGA-GACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</genome_strand>
        <mrna_strand>CAAAAGCTCCTTCAAATGGGACCACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTTGGATCCTTTTGAAGTTTCAAGCAGAGACCTTATTACTGTGTAAATAAGTCTTAAGAAAACTTGT-AA-A-TACTTACGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCCTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230410" ref_strand="+" ref_description="SGN-E230410 [cLEL-35-K6](-)">
      <seq>ccatttataaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatgaaaaaatnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="24743" stop="23914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24443" g_stop="24215" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="244"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E230410" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24443" e_stop="24215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAG</genome_strand>
        <mrna_strand>CCATTTATAAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230912" ref_strand="+" ref_description="SGN-E230912 [cLEL-35-K6](-)">
      <seq>gaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtatgttgttcgcaaaaggattaagctcagcgctgaaaaggccatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacacaaggatgaggacggcttcctgtacatgacctacagtggcgagaataccttcggatccttctgaagtttcaagcggagagaccgtactgtgtaaataacgctgaagaaaacttgtaaatactacttgcgttagcctactcttctgaattatctttctaccaagatgctgtcttgggttgacattgactggtttatgtagttacctttatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="24964" stop="23914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24761" g_stop="24755" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24754" i_stop="24663" i_length="92">
            <donor d_prob="0.091" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="125" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24458" g_stop="24221" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="363" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="384"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E230912" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24761" e_stop="24755"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTT</genome_strand>
        <mrna_strand>GAA-AAA............................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAAAGGATTAAGCTCAGCGCTGAAAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580592" ref_strand="+" ref_description="SGN-E580592 [5835]">
      <seq>ctttcactctctttgtgatttctttgaatacgccaattttattgttaagtcattctcagatcaccatggtccaaaagctccttcaaattaggaacacccggcttgagaggcgacaggctagaagctgctcgtatcaggcagaagtaccctggatagaataccggtgattgttgagaaagctgaaagcaagtgacatccctgacattgacaagacaaaagtatatggttcccgcggatctgactgttggccaatttgtgtatgttgttcgcaagaggattaagctcagcgctagagaaggctatttttatctttgtgaagaatatcttcacccctacagctgccatgatgtctgccatttatgcaggaacataaggatcaggatggcttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27557" stop="24106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27367" g_stop="27341" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="105" r_length="78" r_score="0.853"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="163" r_length="58" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="218" r_length="55" r_score="0.906"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="338" r_length="120" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24458" g_stop="24406" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="392" r_length="54" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E580592" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27367" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGG-CCAAAAGCTCCTTCAAATT-GGAACACCCT-CTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCT-GAAGCTGCTCGTATCAGGGAGAAGTACCCT-GATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAG-AAGTGACATCCCTGACATTGACAAGA-AAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCT-GAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATG-AGGAACACAAGGATGAGGACGGCTTCCTG</genome_strand>
        <mrna_strand>CTTTCACTCTCTTTGTGATTTCTTTGA..............................................................................................ATACGCCAATTTTATTGTTAAGTCATTCTCAGATCACCATGGTCCAAAAGCTCCTTCAAATTAGGAACACCCGGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTAGAAGCTGCTCGTATCAGGCAGAAGTACCCTGGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGAAAGCAAGTGACATCCCTGACATTGACAAGACAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATGGTTCCCGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTAGAGAAGGCTATTTTTATCTTTGTGAAGAATATCTTCACCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGCAGGAACATAAGGATCAGGATGGCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566372" ref_strand="+" ref_description="SGN-E566372 [4811]">
      <seq>aagctccttcaaattggaacacccgcttgagaggcgacaggctgaagctgctcgtatcaggcagaagtaccctgatagaataccggtgattgttgagaaagctgacagaagtgacatccctgacattgacaagaaaaagtatttggttcttgcggatctgactgttggccaatttgtgtatgttgttcgccagaggattaagctcagcgctgagaaggctatttttatctttgtgaagaatatcctcccccctacagctgccatgatgtctgccatttatgaggaacataaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27500" stop="24120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27200" g_stop="27172" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="85" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="138" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24662" g_stop="24544" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="257" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24458" g_stop="24420" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="296" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E566372" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27200" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24544"/>
          <exon e_start="24458" e_stop="24420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGAAGAACACTTTTGTAGTATCTGTTATTACTACTATGCCTTGAACAATTCCCGTTCTAATTTTTCTTCCACATTGTTACAGCTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATG</genome_strand>
        <mrna_strand>AAGCTCCTTCAAATTGGAACACCCGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGCAGAAGTACCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAAGCTGACAGAAGTGACATCCCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCTTGCGGATCTGACTGTTGGCCAATTTGTGTATGTTGTTCGCCAGAGGATTAAGCTCAGCGCTGAGAAGGCTATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG.....................................................................................CTGCCATGATGTCTGCCATTTATGAGGAACATAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284735" ref_strand="+" ref_description="SGN-E284735 [cLES-3-E23]">
      <seq>ttggttgcgttttccactctttttgtgatttgtttgtataccccaatttttttgttagatcattcttagatcaccatggccaaaagcttcttcaaattggaacaccctcttgagaggcgacaggctgaagctgctcgtatcagggagaagttccctgatagaataccggtgattgttgagaaggctgaaagaagtgacatacctgacattgacaagaaaaagtatttggttcccgcggatctgactgttggacaatttgtgtttgttgttcataagaggattaagctcaccgcttagaaggccatttttatctttgtagaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="27677" stop="24260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27377" g_stop="27341" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27246" g_stop="27172" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="112" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25544" g_stop="25489" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="168" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25387" g_stop="25335" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="221" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24662" g_stop="24560" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="325" r_length="104" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E284735" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27377" e_stop="27341"/>
          <exon e_start="27246" e_stop="27172"/>
          <exon e_start="25544" e_stop="25489"/>
          <exon e_start="25387" e_stop="25335"/>
          <exon e_start="24662" e_stop="24560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGCGTTTTCCACTCTTTTTGTGATTTGTTTGTGTAAGCTCTCTTTTCTCCTAAACTATAAACTCCGGATCTTTTTCCCCTTTTCTGCTAGAAAACCCTAATTTTATTTTCATATTTTGGTTTGCAGATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGGTAATTTTTCCTGTTTTTTTTTTTTAATTTTGTTTTTGGTTATAAGATCTGATATTTGAATTGTTCAATTGTGGAATTTCTTTAATCAGAGTGGTAATTGATGAATTATTGTGTTGGGGTGGGGGTGGAGATAGGGTGGTGTTTGGAGGTTTTGGGGGTTGGAGATAGGGTGGTGTTTGANGTTTGGGGGTGGAAATAGGGTGGGTGTTATGAGGTTTGGGAAGGAAATATTGGTGGGGGTGGGAAAAAAGGGTGGGGTTTTGAAGGTTGGGGGTGGAAAAAAGGGTGGGTGTTATTAAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGAGATAGGGGGTGGTTTTTGGGGGGTTTGGGGGTTGGGAGATAGGGGGTGGTTTTTGGAGGTTTGGGGGTGGGAATAGGGGTGGTGTTATGAGGTTTGGGAAGGGAGATATGTTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTGGGGGTGGAGATAGGGTGGTGCTATGAGGTTTTGGGAGAGAGATATGTGGGGGGTGGAGATAGGGTGTTTTTGTGAGGTTGGGGGTGGAGATAGGGTGGTGTTATGAGGTTTGGGAGGGAGATATGGTGGGGGTGGAGATAGGGTGGTGTTTTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTAGGAGGGAGATATGGTGGTGTTGTGAGGTTTGGAGGTGGAGATAGGGTGGTATTGTGAGGTTTGGTGGGGGTGGTGGGGGATTATACCATGAAACCCTGTTTATGCATATGTTTGATTCTTGTTTTTGGATTTGACTGTCTATTTGGTACAGTTGGAGGTTTTGGAATTCCTTTCTTTCAGTTAACGTTCTGTGTTGTTGCTCGAACTCTTCAAAAACTGTCTACACGGATGGGGGGTGGAGATAAGGTGGTTTTCTGAGGTTTGGTGGTCAATTATACCATAAAACCCTTTTTGTGCATGTGCCTGATTCTTGATTGTGGATTTGACAGTCTATTTGATACAATTGGAGGTTTTGGGATTCCCCTTTTAGTTAACAATTTATGTTGTTGTACGAACTCTTCGAAAATGTCAATGGTTGTGGAGTGTTCTACACGGATACGGCAATAATTTTGGAGAGTCTGAGCAACATAGGTTACAATTATGTGTGCCTATTTGTTCTATATTACTAGTAGCCTAGTACTTGTACTTGTTGCAATTATATAGATTTTGTGAGAAATTTGCCACTATATGGTGTACAAAGTTTAAGTATAAGAACATCGTACATGTAGTCTGGTAAAGAATTCTCTATTTGGTTGAAGTTGTTTGTTCTTATTGCTAATCATTTGATGTTCTCCCAATAACTTTTGGAGGGATATTGTTTGATGGATGAGCATGGGCTTCTTGTGGATACCTACTTACCTAGTGTATATTTCGTTTATGTGCTTCTAATACTTCTAGATTTATCTTTTGAATTTTCTTTTCCTTGTAACTTTCTTTTTCTGCAATTTTTGGATGTCGTCTTCATGTTATTTTAATTTGGTTTTGCATTCATGTAGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCGGTACAAATTTCATATATTCTCTTGCAATGCTCTTCTGGATGTGCTACAAAGTTTATATGCTTTTTATCCAACCTAATTCCTTGTTTCTTCTTGCTATTTAGGTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAAGTTAGTCTTTTATCTCCTTGATTTCATTTGACAATGTCCTTGCGTTTAGAGTGCTTTATTATCTCGTCACAAATGAGCTTTTGTTTCCCTGTGATGATGCCATAATAATGTACCTTTCTAGTTGTGCACTCGAGTAGTATGGTTACTATGATGTATATCTTCCCTTTCAACTATTATGTGGCGTTCGAGTTGTATGGTTACTATGGTGTATATCTTCCCTTCGAACTATGATGTTTCTCTCGAGTTGTATAGTTACTATGGTGTATAATTTCCCTTTGAACTATGATGTGACTGATTTAAGTTCTTGCCATATCTTTGCGCAGAATAACTTATTCAAGTATTTTTTTATTGTTGTCGAAACAATTTTTTGAGTCAGTAGTAGTAGTATTACCATTAATCAGACTGAAAGATCTTTAATTTGCTCTAGCAATGTGTTTATAGAAATGCAAGGCTAGTGTGAAAATTTGTTGTAGAATGTTGATATGAAATTTTTCTGGACGTGTTTCCTCTGTTCTTATAGAGTCGTCTGATGTTAAAGCAACTCAAACGATGATTTCTACTGCCAGAGAGGTTGAACAAAGTTCACTTAGCTAATCTTCCCATGCGCTCATGCTCTTTCTAAGTTCTACTTAGGTTTAACTGCAAATTGTTTGTTAATCGAAATACCTGCAGGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGT-GAAGAAT</genome_strand>
        <mrna_strand>TTGGTTGCGTTTTCCACTCTTTTTGTGATTTGTTTGT..............................................................................................ATACCCCAATTTTTTTGTTAGATCATTCTTAGATCACCATGGCCAAAAGCTTCTTCAAATTGGAACACCCTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTTCCCTGATAGAATACCG.....................................................................................................GTGATTGTTGAGAAGGCTGAAAGAAGTGACATACCTGACATTGACAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTTTGTTGTTCATAAGAGGATTAAGCTCACCGCTTAGAAGGCCATTTTTATCTTTGTAGAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392634" ref_strand="+" ref_description="SGN-E392634 [TUS-35-N10](-)">
      <seq>gaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagatcaagcccccccccacttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaggcgagaatgctttgtggaatgcatccttttgacaaaatccatcatttctccaatctctggaggctccaaaaatggttacacgaacactcgaaaaaacaagatgtatccgagaattctcagaaacattatataaactgtatcaatgggagagggaagagaggttgccactatatctgctccaaatattattagctaaggagagggatagtattgtagcaaccaatatgtgaagcaaaaagtgtaaagagtcattctttttagatgcttagattataataatttgttagtctttgtgagaggaaactatcaagtgtaatacttttgttgcttttgtatgaagttttgaaatgaaatttaccttttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="30766" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30466" g_stop="30424" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29550" g_stop="29057" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="538" r_length="495" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E392634" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30466" e_stop="30424"/>
          <exon e_start="29550" e_stop="29057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAG-CAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTACTTTGTTTCA</genome_strand>
        <mrna_strand>GAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGATCAAGCCCCCCCCCACTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378071" ref_strand="+" ref_description="SGN-E378071 [TUS-21-N20](-)">
      <seq>cgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaggcgagaatgctttgtggaatgcatccttttgacaaaatccatcatttctccaatctctggaggctccaaaaatggttacacgaacactcgaaaaaacaagatgtatccgagaattctcagaaacattatataaactgtatcaatgggagagggaagagaggttgccactatatctgctccaaatattattagctaaggagagggatagtattgtagcaaccaatatgtgaagcaaaaagtgtaaagagtcattctttttagatgcttagattataataatttgttagtctttgtgagaggaaactatcaagtgtaatacttttgttgcttttgtatgaagttttgaaatgaaatttaccttttattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="30982" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30682" g_stop="30618" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="175" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29550" g_stop="29059" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="667" r_length="492" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E378071" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30682" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTACTTTGTTT</genome_strand>
        <mrna_strand>CGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258304" ref_strand="-" ref_description="SGN-E258304 [cLEG-49-M12]">
      <seq>gattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaggcgagaatgctttgtggaatgcatccttttgacaaaatccatcatttctccaatctctggaggctccaaaaatggttacacgaacactcgaaaaaacaagatgtatccgagaattctcagaaacattatataaactgtatcaatgggagagggaagagaggttgccactatatctgctccaaatattattagctaaggagagggatagtattgtagcaaccaatatgtgaagcaaaaagtgtaaagagtcattctttttagatgcttagattataataatttgttagtctttgtgagaggaaactatcaagtgtaatacttttgttgcttttgtatgaagttttgaaatgaaatttaccttttattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="30777" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30477" g_stop="30424" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29550" g_stop="29063" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="542" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E258304" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30477" e_stop="30424"/>
          <exon e_start="29550" e_stop="29063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTACTTT</genome_strand>
        <mrna_strand>GATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375661" ref_strand="+" ref_description="SGN-E375661 [TUS-35-M11](-)">
      <seq>acagggcagttatatgccatttcaaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaggcgagaatgctttgtggaatgcatccttttgacaaaatccatcatttctccaatctctggaggctccaaaaatggttacacgaacactcgaaaaaacaagatgtatccgagaattctcagaaacattatataaactgtatcaatgggagagggaagagaggttgccactatatctgctccaaatattattagctaaggagagggatagtattgtagcaaccaatatgtgaagcaaaaagtgtaaagagtcattctttttagatgcttagattataataatttgttagtctttgtgagaggaaactatcaagtgtaatacttttgttgcttttgtatgaagttttgaaatgaaatttaccttttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="30973" stop="28767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30673" g_stop="30618" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="167" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29550" g_stop="29071" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="647" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="659"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E375661" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30673" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGCAGTTATATGCCATTTC-AAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTT</genome_strand>
        <mrna_strand>ACAGGGCAGTTATATGCCATTTCAAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715139" ref_strand="+" ref_description="SGN-E715139 [FB13BH02]">
      <seq>ctgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaggcgagaatgctttgtggaatgcatccttttgacaaaatccatcatttctccaatctctggaggctccaaaaatggttacacgaacactcgaaaaaacaagatgtatccgagaatcctcagaaacattatataaactgtatcaatgggagagggaagagaggttgccactatatctgctccaaatattattagctaaggagagggatagtattgtagcaaccaatatgtgaagcaaaaagtgtaaagagtcattctttttagatgcttagattataataatttgctagtctttgtgagaggaaactatcaagtgtaatacttttgttgcttttgtatgaagttttgaaatgaaatttaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="29782" stop="28772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29483" g_stop="29072" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E715139" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29483" e_stop="29072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTT</genome_strand>
        <mrna_strand>CTGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATCCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGCTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727681" ref_strand="+" ref_description="SGN-E727681 [LA15BF12]">
      <seq>agatccccgaattggcgaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgtgttgcttcctttgattgnagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaagcgagaatgctttgtggaatgcatcctttttgacaaatccatcatttctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32479" stop="29082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32179" g_stop="32069" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="248" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="369" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="457" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="583" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="693" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29550" g_stop="29382" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="862" r_length="169" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E727681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32179" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCA</genome_strand>
        <mrna_strand>AGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGNAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAAGCGAGAATGCTTTGTGGAATGCATCCTTTTTGACAAATCCATCATTTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730433" ref_strand="+" ref_description="SGN-E730433 [LA24AE03]">
      <seq>cgtttaaacactgccttcaacagccgaaagagaagagactcacttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtggggaaagcgagaatgctttgtggaatgcatccttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32431" stop="29101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32135" g_stop="32069" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="131" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="204" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="325" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="413" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="649" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29550" g_stop="29401" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="799" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E730433" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32135" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGAC</genome_strand>
        <mrna_strand>CGTTTAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCACTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAAGCGAGAATGCTTTGTGGAATGCATCCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208899" ref_strand="+" ref_description="SGN-E208899 [cLEC-51-B12]">
      <seq>acatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggggcaacatttgtgttgcttcctttgattggagctgcagcgggatatgcaggtccgtagataggattatggaggttcatcgacgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="31439" stop="29140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31139" g_stop="31021" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="207" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="333" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="443" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29550" g_stop="29440" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="556" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E208899" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31139" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCA--GGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTG</genome_strand>
        <mrna_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201430" ref_strand="+" ref_description="SGN-E201430 [cLEC-4-N6]">
      <seq>acatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatgatagaagattgtgttgtggaactccgccagattgtgagtggaaagctcaagcaggcaacatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="31439" stop="29216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31139" g_stop="31021" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="207" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="333" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30533" g_stop="30424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="443" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29550" g_stop="29516" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="478" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E201430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31139" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30424"/>
          <exon e_start="29550" e_stop="29516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAGGTAACAATTCATACAAATTATTTCTTGGAAATAGAAAATTTTCTAGAACTGTCAGTCTTAATCTTCCATGAAGTTTTGATCTTTGTATTCTGCATTAAATATTTTCAAACTTAGAGTATCATAATACATTTTTTCCACCTTTGATTGTTTTCCCGACCAAATAAGGCAGCCAGGCAGGAATTATAACGATAATGATCATTTGCTAATTTAGAAAGGTCATTGAGATCTGCCGACGAGATCAAGCAATTGATGTTAGAATTTCTCCAAGTACTTCATGATCTTTCCGATTTTGGTTAATTCAAAAGGCTTATATTTTGATTTGGTTGGCCTCATTATTTGGTTTACATGGTATTAGTCTATTAGAACAACCACGGTAACCGCAAGATGGTGGTTTACCCTGTGGTAGTTTATACACTATCAAGAAACAGTACATGATTCCTTCCCTTTTTTCATCATGACTGTTCTGTACTTCTTCACATGGTGCCCATTCAGGTAGTGTAGCTTTTTTCTCCCACATGGCTGCCTTGTCCTTTAATGCACATGGCACCAATCTGCTAGTTTGTTCCTCCTCCTTTATTGCCTCACGAGACGATTTTTTTTGCATCTATACTACTTTCATGGTTCGTTTGATTGAGAAAAAGTTCTTGAATTGCCTTTCCATTTTTCTTTTTTTACGCACTTCAGTATCCACTCGATTCAGAAAAATTCCCTTCCTTTCCATACATTAGATCCTTGAATGTGGGAAAATGGATAAAGAACAACTATATATATTCAAACCAGGAACGTTGACTCGGGAAGAAGAAGTTTGATTTGATTAATCTCTAAATGTTCCGAGATGACTAAATTTGATTTTGTCTATTGTAATTTCACCAGATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGT</genome_strand>
        <mrna_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689130" ref_strand="+" ref_description="SGN-E689130 [t3_tus_80_D19]">
      <seq>gtgaaaagtgaatccaaggataatttcggtgaagttacaaaaacacatcatgctatacaaaccctggataaaacaatttcaaacttagagatggaactagctgcagcaagggctttgcaagattctatactgagtgggtctccaataacagaagacataaagatccccgaattggcgaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattgganatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctntaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcantggattggatgtggaacatatagatgatagaagattgtgttgtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32741" stop="30132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32441" g_stop="32383" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32280" g_stop="32069" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="271" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="335" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="408" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="529" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="617" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="743" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30533" g_stop="30432" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="845" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E689130" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32441" e_stop="32383"/>
          <exon e_start="32280" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACAGTATGTTCTCATGCTTTTAACTTGTAGATTTGACGGATGTCATACTTTATTTTCCTCTGAAACAATGAATTCATAGGTTGTTGTCCTTGTACTAAAATACAGAACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAAC</genome_strand>
        <mrna_strand>GTGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACA......................................................................................................AACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGANATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTNTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCANTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207708" ref_strand="+" ref_description="SGN-E207708 [cLEC-32-C17]">
      <seq>acatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgttaatgaggatgtctcattgggttcatggctcattggattggatgtggaacatatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="31439" stop="30154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31139" g_stop="31021" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="207" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="333" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30533" g_stop="30454" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E207708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31139" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATG</genome_strand>
        <mrna_strand>ACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231763" ref_strand="+" ref_description="SGN-E231763 [cLED-4-J24]">
      <seq>agaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacaaggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagcatgttctacacaagtatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32456" stop="30212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32156" g_stop="32069" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="152" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="225" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="346" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="434" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30743" g_stop="30618" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="560" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30533" g_stop="30512" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="582" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E231763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32156" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30618"/>
          <exon e_start="30533" e_stop="30512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTTTTGTTGTTTCCTGATATACTTGGAATGTATTGTGTTGTTTTGCGTGATTATCAATTGTTGATCCTGATCATCCTAGGCATGTTCTACACAAGTATGTT</genome_strand>
        <mrna_strand>AGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAAGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA....................................................................................GCATGTTCTACACAAGTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204529" ref_strand="+" ref_description="SGN-E204529 [cLEC-24-E15]">
      <seq>cttgataaagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatctggtccagtccttgctcaaaagggagtgagatatcatgagcctgagcattggaaatttggtgaggatggaaacaaatattttcgacatgcaacagggcagttatatgccatttcaaaagatttagctacttatatatctttaaatcagtaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="31592" stop="30310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31292" g_stop="31239" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="175" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30906" g_stop="30819" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="263" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30743" g_stop="30610" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="397" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E204529" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31292" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30819"/>
          <exon e_start="30743" e_stop="30610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAAGTAAGCAGAAAAGTTCTACTTTTGACCGTAAACAATTCCTTAAAATTGCCTTGACTCACCTCTATTTTACCGCAGGGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTT</genome_strand>
        <mrna_strand>CTTGATAAAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA...........................................................................GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573205" ref_strand="+" ref_description="SGN-E573205 [32479]">
      <seq>tgacaggatgtggacagtgccagaagctaaaggcataacaaggacaacacagattgatgatcaaaagctaggggtagtttctgaggactgtgatcctaccaataaggatgtgaaaagcaaatccaaggacattttcggtgaagttacgaaaacacaccatgctatacaaaccttggataaaacaatttcaaacctagagatggaactagctgcagcaagggcgttgcaagattctatactgagtggttctccaataacagaagacataaagatccccgaattggccaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaagggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattctcgatagagcaattgaagcagaagacaagaagcatggagatttcttgaggctggaacatgttgagggatatcttgaattatctgccaagacaaagacatattttactactgctgttgctctgtgggatgctgatttctatattaaagttgacgatgatgtacatgtaaatataggtgcactgggagcaactctagctaggcatcanttcaaaactcgggtatatattggttgcatgaaatctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="33017" stop="30535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32717" g_stop="32615" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32614" i_stop="32448" i_length="167">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32447" g_stop="32383" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="168" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32280" g_stop="32069" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="380" r_length="212" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="444" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="517" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="638" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30906" g_stop="30835" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="710" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E573205" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32717" e_stop="32615"/>
          <exon e_start="32447" e_stop="32383"/>
          <exon e_start="32280" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGGATGTGGACAGTGCCAGAAGCTAAAGGCATAACAAGGACAACACAGATTGATGATCAAAAGCTAGGGGTAGTTTCTGAGGACTGTGATCCTACCAATGTGAGTATTAGATCGAAAAAGGTGGCAACAATTCGATAAATATTTTAAGTCATTCTAATTGAATGGAGAAATGGGGATTTATATAGATGATTTCAACTTGTTTGGGATTGAAGTATAGTTGTTGTTGTCATCAAAATAATGGCTTTTGGTGTTTTTGCTTTATTCAGAAGGATGTGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACAGTATGTTCTCATGCTTTTAACTTGTAGATTTGACGGATGTCATACTTTATTTTCCTCTGAAACAATGAATTCATAGGTTGTTGTCCTTGTACTAAAATACAGAACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTC</genome_strand>
        <mrna_strand>TGACAGGATGTGGACAGTGCCAGAAGCTAAAGGCATAACAAGGACAACACAGATTGATGATCAAAAGCTAGGGGTAGTTTCTGAGGACTGTGATCCTACCAAT.......................................................................................................................................................................AAGGATGTGAAAAGCAAATCCAAGGACATTTTCGGTGAAGTTACGAAAACACACCATGCTATACA......................................................................................................AACCTTGGATAAAACAATTTCAAACCTAGAGATGGAACTAGCTGCAGCAAGGGCGTTGCAAGATTCTATACTGAGTGGTTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCCAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAGGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTCGATAGAGCAATTGAAGCAGAAGACAAGAAGCATGGAGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTTGAATTATCTGCCAAGACAAAGACATATTTTACTACTGCTGTTGCTCTGTGGGATGCTGATTTCTATATTAAAGTTGACGATGATGTACATGTAAATATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCANTTCAAAACTCGGGTATATATTGGTTGCATGAAATCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250896" ref_strand="+" ref_description="SGN-E250896 [cLEG-13-O11]">
      <seq>catcatgctatacaaaccctggataaaagagtttctaacttagagatggagctagctgcagcaagggctttgcaagattctatactgagtgggtctccaataacagaagacataaagatccccgaattggcgaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtacatgtaaacataggtgcactgggagcaactctagctaggcatcattcgaaacctcgggtatatattggttgcatgaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32586" stop="30539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32396" g_stop="32383" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32280" g_stop="32069" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="226" r_length="212" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="290" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="363" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31141" g_stop="31021" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="484" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30906" g_stop="30839" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="552" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E250896" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32396" e_stop="32383"/>
          <exon e_start="32280" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31021"/>
          <exon e_start="30906" e_stop="30839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGCTATACAGTATGTTCTCATGCTTTTAACTTGTAGATTTGACGGATGTCATACTTTATTTTCCTCTGAAACAATGAATTCATAGGTTGTTGTCCTTGTACTAAAATACAGAACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAGGTAGGACCGTAGGACCTTCGTAGATCGTTCACAAAGACTTTTTATTACTACTACAAGTGCACTGCTATACTTATGCCATCACTCGTTTGAGAACATGCATTTTGGAAACTTCAGGTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCT</genome_strand>
        <mrna_strand>CATCATGCTATACA......................................................................................................AACCCTGGATAAAAGAGTTTCTAACTTAGAGATGGAGCTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG..................................................................................................................GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324847" ref_strand="+" ref_description="SGN-E324847 [cTOC-11-I16]">
      <seq>tgaaaagtgaatccaaggataatttcggtgaagttacaaaaacacatcatgctatacaaaccctggataaaacaatttcaaacttagagatggaactagctgcagcaagggctttgcaagattctatactgagtgggtctccaataacagaagacataaagatccccgaattggcgaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaagttgatgatgatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32740" stop="30732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32440" g_stop="32383" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32280" g_stop="32069" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="270" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="334" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="407" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31141" g_stop="31032" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="517" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E324847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32440" e_stop="32383"/>
          <exon e_start="32280" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACAGTATGTTCTCATGCTTTTAACTTGTAGATTTGACGGATGTCATACTTTATTTTCCTCTGAAACAATGAATTCATAGGTTGTTGTCCTTGTACTAAAATACAGAACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACA</genome_strand>
        <mrna_strand>TGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACA......................................................................................................AACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240777" ref_strand="+" ref_description="SGN-E240777 [cLED-24-I24]">
      <seq>ggaactagctgcagcaagggctttgcaagattctatactgagtgggtctccaataacagaagacataaagatccccgaattggcgaagaagagaaaatatcgaatggtcatagggataaacactgccttcaacagccgaaagagaagagactcagttcgtgctacttggatgccacaaggtgataagcgaaagaagctagaggaagaaaaaggcattgtaattcgttttgtaataggtcacagtgcaacatcaggtggcattcttgatagagcaattgaagcggaagacaagaagcatggtgatttcttgaggctggaacatgttgagggatatctggaattatctgctaagacaaagacatattttactactgctgttgctctatgggatgctgatttctatattaaaagtgatgatgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="32547" stop="30734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32247" g_stop="32069" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31965" g_stop="31902" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31311" g_stop="31239" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="316" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31141" g_stop="31034" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="424" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E240777" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32247" e_stop="32069"/>
          <exon e_start="31965" e_stop="31902"/>
          <exon e_start="31311" e_stop="31239"/>
          <exon e_start="31141" e_stop="31034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAGGTATTTGAGCTTCACTGTTTTGCTTTATTTTGAGTTACTTGTGGGGATTTTCCATTTGTTGGATGCATACCAAGCATTTTGATTATTGACTTGTGGAAAACAGGTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAGGTGAGTACTACAACTGACATCTGATATATTCTCAAGGTGTTGTGTTTCCAGTCTTCTTGATATCGTTGTTAGCTCATAATTATTTTCCAGTAGTGACCCATTGTCACCCATTCGTAACTTCTTGTGTTGTTGTAAAGGTGGCTTTCTTTGAAAATTTCCATCAACAGTTTCTTAGAGCATATATTAGAAATGACAAAAACATATATGTAGTTCACATTTTCACAATCTTGTCTAGTATAATTGAAGACTCAGTACTTAAAAAGATACTTCGAAGTTGGGGCAGCTGATATTTCATATTTATCCTATTACTACTTCCGTCTCAATTTGTTTGTCTAGTTTTGACTTGGCACAAAGTTTTAAGAAAATAAAGGAACTTTTAAATCTTGTGGTCTTAAATTTGTCATGTGAAGAGTTCGATTAAAGAGTTACCAAAAAAGTACAGAGGTATTCTTATTGAAACGGACTAAAAAGGAAAGTAATGCAAACAAATTAAAATGGAGGGAGTAATTTGGGAGGGGTTAATTTTCATACTTATTTACTTGTAATTTGATGTTCTTGTAGTCTTACTCATCTAATTTTCCAATAATCAGTGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTGGTAACAGTAACGCTTTTTAGTCTAGTCTTATATTAGATTCCATCTCACGGCTGTAAAACTATTCTAACTGTCAGACATGTTATTGTGACATCTGTAGGAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTA</genome_strand>
        <mrna_strand>GGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG.......................................................................................................GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG.................................................................................................GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAAGTGATGATGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395626" ref_strand="+" ref_description="SGN-E395626 [TUS-16-L6]">
      <seq>atcgagccatcgacgcgttgatgtgatatgtttacccctaaattctgctcacttgtaagaatcaagaccccaccccgcaccccacaaagggaagggagtcaactgtacatctcaacgattaggaggaactttacctgcatcagatcccgtgtttctagctcatccaagatgagcgtgtttgggtgaattgtgacctcgtacaatcgtgtcacctcaatgatcttcagaagaagtcttataccatgttttacacctagttgctaacttccaaatgctgccacagacacttcttaaagctatcttctgtgtttccattatgaggtagaatttgcaagctggagcaaagaaccaacacttcatatggatccaaatgcataagagcctcaggcgctctatcatagtcctagcaaatcaagaatattgattatgagaaatttgtaataatttgttagttacttttagtacgtatatatatatgagagtttaattcacaacgacaataacaatataaccaatggaatcccacaagtggggttttgggaaggtagaatgtacgcaaagcttacccctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="36516" stop="37689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36816" g_stop="37389" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E395626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36816" e_stop="37389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGCCATCGACGCGTTGATGTGATATGTTTACCCCTAAATTCTGCTCACTTGTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGAGGAACTTTACCTGCATCAGATCCCGTGTTTCTAGCTCATCCAAGATGAGCGTGTTTGGGTGAATTGTGACCTCGTACAATCGTGTCACCTCAATGATCTTCAGAAGAAGTCTTATACCATGTTTTACACCTAGTTGCTAACTTCCAAATGCTGCCACAGACACTTCTTAAAGCTATCTTCTGTGTTTCCATTATGAGGTAGAATTTGCAAGCTGGAGCAAAGAACCAACACTTCATATGGATCCAAATGCATAAGAGCCTCAGGCGCTCTATCATAGTCCTAGCAAATCAAGAATATTGATTATGAGAAATTTGTAATAATTTGTTAGTTACTTTTAGTACGTATATATATATGAGAGTTTAATTCACAACGACAATAACAATATAACCAATGGAATCCCACAAGTGGGGTTTTGGGAAGGTAGAATGTACGCAAAGCTTACCCCTAACT</genome_strand>
        <mrna_strand>ATCGAGCCATCGACGCGTTGATGTGATATGTTTACCCCTAAATTCTGCTCACTTGTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGAGGAACTTTACCTGCATCAGATCCCGTGTTTCTAGCTCATCCAAGATGAGCGTGTTTGGGTGAATTGTGACCTCGTACAATCGTGTCACCTCAATGATCTTCAGAAGAAGTCTTATACCATGTTTTACACCTAGTTGCTAACTTCCAAATGCTGCCACAGACACTTCTTAAAGCTATCTTCTGTGTTTCCATTATGAGGTAGAATTTGCAAGCTGGAGCAAAGAACCAACACTTCATATGGATCCAAATGCATAAGAGCCTCAGGCGCTCTATCATAGTCCTAGCAAATCAAGAATATTGATTATGAGAAATTTGTAATAATTTGTTAGTTACTTTTAGTACGTATATATATATGAGAGTTTAATTCACAACGACAATAACAATATAACCAATGGAATCCCACAAGTGGGGTTTTGGGAAGGTAGAATGTACGCAAAGCTTACCCCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206501" ref_strand="+" ref_description="SGN-E206501 [cLEC-23-J15]">
      <seq>gtgatatgtttacccctaaattctgctcacttgtaagaatcaagaccccaccccgcaccccacaaagggaagggagtcaactgtacatctcaacgattaggaggaactttacctgcatcagatcccgtgtttctagctcatccaagatgagcgtgtttgggtgaattgtgacctcgtacaatcgtgtcacctcaatgatcttcagaagaagtcttataccatgttttacacctagttgctaacttccaaatgctgccacagacacttcttaaagctatcttctgtgtttccattatgaggtagaatttgcaagctggagcaaagaaccaacacttcatatggatccaaatgcataagagcctcangcgctctatcatagtcctagcaaatcaagaatattgattatgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="36538" stop="37550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36838" g_stop="37250" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E206501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36838" e_stop="37250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATGTTTACCCCTAAATTCTGCTCACTTGTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGAGGAACTTTACCTGCATCAGATCCCGTGTTTCTAGCTCATCCAAGATGAGCGTGTTTGGGTGAATTGTGACCTCGTACAATCGTGTCACCTCAATGATCTTCAGAAGAAGTCTTATACCATGTTTTACACCTAGTTGCTAACTTCCAAATGCTGCCACAGACACTTCTTAAAGCTATCTTCTGTGTTTCCATTATGAGGTAGAATTTGCAAGCTGGAGCAAAGAACCAACACTTCATATGGATCCAAATGCATAAGAGCCTCAGGCGCTCTATCATAGTCCTAGCAAATCAAGAATATTGATTATGAGAAAT</genome_strand>
        <mrna_strand>GTGATATGTTTACCCCTAAATTCTGCTCACTTGTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGAGGAACTTTACCTGCATCAGATCCCGTGTTTCTAGCTCATCCAAGATGAGCGTGTTTGGGTGAATTGTGACCTCGTACAATCGTGTCACCTCAATGATCTTCAGAAGAAGTCTTATACCATGTTTTACACCTAGTTGCTAACTTCCAAATGCTGCCACAGACACTTCTTAAAGCTATCTTCTGTGTTTCCATTATGAGGTAGAATTTGCAAGCTGGAGCAAAGAACCAACACTTCATATGGATCCAAATGCATAAGAGCCTCANGCGCTCTATCATAGTCCTAGCAAATCAAGAATATTGATTATGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395625" ref_strand="+" ref_description="SGN-E395625 [TUS-16-L6](-)">
      <seq>tatttctttttgggggacataaattaagaagcgctccaagttgagagatagtcactcgcatccttacaccaggttaaagataaattgcaggaaaaaaaagcttcaaataaggttagcaaaacctagaaagaagacgatgaatggttattgaaggacagggaggagtgaggagtttccgtgccttgcattttagggttaccttggccagatgagcttattaataaacaacggtgacatttaccacgtgagcaattttcagaaggattgggccatttctttgcacagattgttaaaagctgtagatgtaagtaacagggagtgaggtaaatgtagttgttttagcatcagaattataatttttttattttgtaaaagttaaagtagaaaaggttggctatattaatttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="37213" stop="38221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37513" g_stop="37921" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="445"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E395625" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37513" e_stop="37921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTT-TTTTTGGAGGACATAAATTAAGAAGC-CATCAAGTTGAGAGATAGTCAATAGCATCTTTACACCAAGATAAAGATAAATTGCAGGACGAGAAAGCATCAAATAAGGTTAGCAAAACCTAGAAAGAAGACGATGAATGGTTATTGAAGGACAGGGAGGAGTGAGGAGTTTCCGTGCCTTGCATTTTAGGGCTACCTTGGCCAGATGAGCCTACTAATAAACAACGGTGACATCTACCACGTGAGCAATTCTCAGAAGGATTGGGCCATTTCTTTGCACAGATTGCTAAAAGCTGTAGATGTAAGTAACAGAGAGTGAGGTAAATGTAGTTGTCTTAGCATCAGAATTATAATTTTCTTATTCTGTAAAAGTTAAAGTAGAATATGTTGGCTATATTAACTCTTCCA</genome_strand>
        <mrna_strand>TATTTCTTTTTGGGGGACATAAATTAAGAAGCGCTCCAAGTTGAGAGATAGTCACTCGCATCCTTACACCAGGTTAAAGATAAATTGCAGGAAAAAAAAGCTTCAAATAAGGTTAGCAAAACCTAGAAAGAAGACGATGAATGGTTATTGAAGGACAGGGAGGAGTGAGGAGTTTCCGTGCCTTGCATTTTAGGGTTACCTTGGCCAGATGAGCTTATTAATAAACAACGGTGACATTTACCACGTGAGCAATTTTCAGAAGGATTGGGCCATTTCTTTGCACAGATTGTTAAAAGCTGTAGATGTAAGTAACAGGGAGTGAGGTAAATGTAGTTGTTTTAGCATCAGAATTATAATTTTTTTATTTTGTAAAAGTTAAAGTAGAAAAGGTTGGCTATATTAATTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245921" ref_strand="+" ref_description="SGN-E245921 [cLEF-51-E21]">
      <seq>acctgtgaagataggcataggtgcaaacagggccaatacagctgcctcttttctgaaaagatatggccacatcagcccttgtaagcacggtgacaagaatttggagaaacgtatctctgataacaaacatggaaattgttcttattctgaccaaatcgggatagcaatcctagatgatggaatgcagcatatcggtttgtggcgtgacatcgagattgtgatggtgaatgcaatgaatccatgggggaaccatcagttaatcccccttggaccattaagggaacctttgaccgcactcacacgtgcaaatatagttgtaatccatcatgcagacatggtctcagtaaaggatgttgaggccatagcatcagaaattcggaaagtaaaaagttctctttctatattcataagcagattgacgcctttgtactttcttaaagctggtaacatgtcttgtaaattggctttgagggatatccgcaatacacttgtcttatgtatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="39965" stop="38326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39665" g_stop="39479" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39478" i_stop="39078" i_length="401">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39077" g_stop="38928" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="337" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38927" i_stop="38793" i_length="135">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38792" g_stop="38626" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="504" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E245921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39665" e_stop="39479"/>
          <exon e_start="39077" e_stop="38928"/>
          <exon e_start="38792" e_stop="38626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGTGAAGATAGGCATAGGTGCAAACAGGGCCAATACAGCTGCCTCTTTTCTGAAAAGATATGGCCACATCAGCCCTTGTAAGCACGGTGACAAGAATTTGGAGAAACGTATCTCTGATAACAAACATGGAAATTGTTCTTATTCTGACCAAATCGGGATAGCAATCCTAGATGATGGAATGCAGGTCTGCCCCCAAAACTGCACGTTAACTGTTAATCACCTACTGATTGAACTGGAATTTTGTTGTTTATATTCAGTAAAACTAATTCATACTTCTTAGGTAAAAATTGTGTCCCATCTTTTGGTGGAATAAGAGTATGTTATACCTTCCCAATTCCTGTTGCTGTGCTTAATCACAATACTCCTTTTCTTTTCCTTTTGGATTATAATTATTTGAACTTCCAAGCAATTTAAAATTGGATATTCTTCTTATTTCAATCCTCAGACTTTATATCCTGACCTAAAAGTGGTCTAGCTTCTGTTTAGGATTTCACATTAGAAGTATGATTGTCGGCTCCTTTAAAATACTTGTTACCTAGAACTTTTGCTCACATTTTGACTTTTGTCAACTATGGATGAAAACAGCATATCGGTTTGTGGCGTGACATCGAGATTGTGATGGTGAATGCAATGAATCCATGGGGGAACCATCAGTTAATCCCCCTTGGACCATTAAGGGAACCTTTGACCGCACTCACACGTGCAAATATAGTTGTAATCCATCATGCAGACATGGTATTAACTCCATCTTTCTCCTGAGTATCTGAGACAACTTCTTGATACTTGTGAAGCATAAAACATTTGATTAGTCAAAATTGGAAAATCAAGTAGGACCTCTAACATCCAGTTTAATTTGTTTGAGTCACGCAGGTCTCAGTAAAGGATGTTGAGGCCATAGCATCAGAAATTCGGAAAGTAAAAAGTTCTCTTTCTATATTCATAAGCAGATTGACGCCTTTGTACTTTCTTAAAGCTGGTAACATGTCTTGTAAATTGGCTTTGAGGGATATCCGCAATACACTTGTCTTATGTATCTC</genome_strand>
        <mrna_strand>ACCTGTGAAGATAGGCATAGGTGCAAACAGGGCCAATACAGCTGCCTCTTTTCTGAAAAGATATGGCCACATCAGCCCTTGTAAGCACGGTGACAAGAATTTGGAGAAACGTATCTCTGATAACAAACATGGAAATTGTTCTTATTCTGACCAAATCGGGATAGCAATCCTAGATGATGGAATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................CATATCGGTTTGTGGCGTGACATCGAGATTGTGATGGTGAATGCAATGAATCCATGGGGGAACCATCAGTTAATCCCCCTTGGACCATTAAGGGAACCTTTGACCGCACTCACACGTGCAAATATAGTTGTAATCCATCATGCAGACATG.......................................................................................................................................GTCTCAGTAAAGGATGTTGAGGCCATAGCATCAGAAATTCGGAAAGTAAAAAGTTCTCTTTCTATATTCATAAGCAGATTGACGCCTTTGTACTTTCTTAAAGCTGGTAACATGTCTTGTAAATTGGCTTTGAGGGATATCCGCAATACACTTGTCTTATGTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273091" ref_strand="+" ref_description="SGN-E273091 [cLEM-24-G1]">
      <seq>gaggctccgtccactttccacactgcaattctctctcatccctcttctttcactagcttccactctttatggctttgttcttcctctccgccatcgcctttactgtcttggcctgcttcacaaagaccaggttgccggtgccagtgattagcgttggaaatttaacttggggaggtaatgggaagacaccaatggttgagtttcttgcagtttggttggctgctgctggaagttcacctcttatacctaacaaggggttatggtggtgcagatgaagcaaaaatgctccaaaggcatctgtgtagaacacctgtgaagataggcataggtgcaaacagggccaatacagctgcctcttttctgaaaagatatggccacatcagcccttgtaagcacggtgacaagaatttggagaaacgtatctctgataacaaacatggaaattgttcttattctgaccaaatcgggatagcaatcctagatgatggaatgcagcatatcggtttgtggcgtgacatcgagattgtgatggtgaatgcaatgaatccatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="41025" stop="38718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40726" g_stop="40598" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40597" i_stop="40419" i_length="179">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40418" g_stop="40295" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="255" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40294" i_stop="39719" i_length="576">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39718" g_stop="39479" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="495" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39478" i_stop="39078" i_length="401">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39077" g_stop="39018" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="555" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E273091" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40726" e_stop="40598"/>
          <exon e_start="40418" e_stop="40295"/>
          <exon e_start="39718" e_stop="39479"/>
          <exon e_start="39077" e_stop="39018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCTCCGTACACTTTCCACACTGCAATTCTCTCTCATCCCTCTTCTTTCACTAGCTTCCACTCTTTATGGCTTTGTTCTTCCTCTCCGCCATCGCCTTTACTGTCTTGGCCTGCTTCACAAAGA-CAGGTAAACAATATCTCTAATTATAAGTTGTATTTGGGTTTATTATGATTTTTTTGTAAGTGGGTATTTGTTTTTTATTGCTTTGATAGCTGTATTTGGGGGTTTTATTATGATTTTGTTGATTTGTTCTATGTGGGATTTTGTTTGCTTACCATACCTATGTAATCTATTTGAACTGTAAGGTTGCCGGTGCCAGTGATTAGCGTTGGAAATTTAACTTGGGGAGGTAATGGGAAGACACCAATGGTTGAGTTTCTTGCAGTTTGGTTGGCTGCTGCTGGAAGTTCACCTCTTATA-CTAACAAGGGTACTCTGATTTTTTTTTCCAGCGATTGCATTATGTTTGATGGTGGTTGATTGAATATGGAATTCGAGATGTAAGCACACGAGGATATGATGTTGTAGTTAATTAAGTGGGATGAGAATCATTGAGGTCTCGGGAGGTAAAAATAGTAGGTGGTTTCTTCTCATCCGTCTAAGCCTTAGGGACAAAGTTAACCTGTAGATATGCTGATGGGAGGTAGAAGTTAGGCAAGGTCCAGACACCATAGTTATAAAAGAAATGTTAACTTGACTTGTATTATATTAATGGTAGTAGAAGAAATATCTAAGTGAAAGTGAAATAGTTAAGAAGTTATTATCTCTTTGTATTAGTCTCGTATATGACCTTGTGATGATGTATTGTGGTCCAACATTTGTTGCATAAATCTTCCAAGATTGGAAGAAATATTTTGAGCCTCTTACTTGGTCTGTTTTGGTGTTTGTTTGTGATATTCAGTTGTTGCTTTTTTCTCATTTCTGATGTACTTTGGACCATTTTCGACTCCAATTCAACTATTTATGAACACAAGGCTAGTGTTACGGAAAATGTTTTCTTCTGTAGGGTTATGGTGGTGCAGATGAAGCAAAAATGCTCCAAAGGCATCTGTGTAGAACACCTGTGAAGATAGGCATAGGTGCAAACAGGGCCAATACAGCTGCCTCTTTTCTGAAAAGATATGGCCACATCAGCCCTTGTAAGCACGGTGACAAGAATTTGGAGAAACGTATCTCTGATAACAAACATGGAAATTGTTCTTATTCTGACCAAATCGGGATAGCAATCCTAGATGATGGAATGCAGGTCTGCCCCCAAAACTGCACGTTAACTGTTAATCACCTACTGATTGAACTGGAATTTTGTTGTTTATATTCAGTAAAACTAATTCATACTTCTTAGGTAAAAATTGTGTCCCATCTTTTGGTGGAATAAGAGTATGTTATACCTTCCCAATTCCTGTTGCTGTGCTTAATCACAATACTCCTTTTCTTTTCCTTTTGGATTATAATTATTTGAACTTCCAAGCAATTTAAAATTGGATATTCTTCTTATTTCAATCCTCAGACTTTATATCCTGACCTAAAAGTGGTCTAGCTTCTGTTTAGGATTTCACATTAGAAGTATGATTGTCGGCTCCTTTAAAATACTTGTTACCTAGAACTTTTGCTCACATTTTGACTTTTGTCAACTATGGATGAAAACAGCATATCGGTTTGTGGCGTGACATCGAGATTGTGATGGTGAATGCAATGAATCCATGGGGG</genome_strand>
        <mrna_strand>GAGGCTCCGTCCACTTTCCACACTGCAATTCTCTCTCATCCCTCTTCTTTCACTAGCTTCCACTCTTTATGGCTTTGTTCTTCCTCTCCGCCATCGCCTTTACTGTCTTGGCCTGCTTCACAAAGACCAG...................................................................................................................................................................................GTTGCCGGTGCCAGTGATTAGCGTTGGAAATTTAACTTGGGGAGGTAATGGGAAGACACCAATGGTTGAGTTTCTTGCAGTTTGGTTGGCTGCTGCTGGAAGTTCACCTCTTATACCTAACAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGGTGGTGCAGATGAAGCAAAAATGCTCCAAAGGCATCTGTGTAGAACACCTGTGAAGATAGGCATAGGTGCAAACAGGGCCAATACAGCTGCCTCTTTTCTGAAAAGATATGGCCACATCAGCCCTTGTAAGCACGGTGACAAGAATTTGGAGAAACGTATCTCTGATAACAAACATGGAAATTGTTCTTATTCTGACCAAATCGGGATAGCAATCCTAGATGATGGAATGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................CATATCGGTTTGTGGCGTGACATCGAGATTGTGATGGTGAATGCAATGAATCCATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737636" ref_strand="+" ref_description="SGN-E737636 [LC10CF06]">
      <seq>gagagggagcttcgtcggagtggacggcttcggaatgttaggtacgctttcgatatcgatgattaccttgacgacgatgagtactttgtcgaagacgatgaggatgagagaggcagagagaagaagctaaaacacttgcttaagctacagagcgatgaaatcggtgctgagtcaactccgagtcggactcgacgagtgtcagtagggcctgccacgtcagcttcgtcttccgacgatggggatgggagaaagccctctaaaaagagaaaaattaacggcgacgatgatagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="45229" stop="46123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45529" g_stop="45823" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E737636" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45529" e_stop="45823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCTTCGTCGGAGTGGACGGCGTCGGAATGTTAGGTACGCTTTCGATATCGATGATTACCTTGACGACGATGAGTACTTTGTCGAAGACGATGAGGATGAGAGAGGCAGAGAGAAGAAGCTAAAACACTTGCTTAAGCTACAGAGCGATGAAATCGGTGCTGAGTCAACTCCGAGTCGGACTCGACGAGTGTCAGTAGGGCCTGCCACGTCGGCTTCGTCTTCCGACGATGGGGATGGGAGAAAGCCCTCTAAAAAGAGAAAAATTAACGGCGACGATGATAGAGATG</genome_strand>
        <mrna_strand>GAGAGGGAGCTTCGTCGGAGTGGACGGCTTCGGAATGTTAGGTACGCTTTCGATATCGATGATTACCTTGACGACGATGAGTACTTTGTCGAAGACGATGAGGATGAGAGAGGCAGAGAGAAGAAGCTAAAACACTTGCTTAAGCTACAGAGCGATGAAATCGGTGCTGAGTCAACTCCGAGTCGGACTCGACGAGTGTCAGTAGGGCCTGCCACGTCAGCTTCGTCTTCCGACGATGGGGATGGGAGAAAGCCCTCTAAAAAGAGAAAAATTAACGGCGACGATGATAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358574" ref_strand="+" ref_description="SGN-E358574 [cLHT-22-B2]">
      <seq>cacgtactatccaagagttggctacaaagaaatttggggggctaataatcaagtatgaccgatctgaaaaggacgtcaagttagaacagaagacaaaatatggttctgttgtcaggaagcaaataaagaagccgatggtctcgatgttccaggaaaatgttggctctgatttctcatcaggtgccactcttgctgcagctggagatagtcactatcttaacaacactcctcttgctggagtgtctgtgaaaccttatggtgttgatgggcttgctgaaggaaattcttcactgatagatcaaaacgtagacaaggcagaagaatcactatcagggaagggtcctctatccagatttggaaggaaattaacggtgcctgatgagaatcgtcgtggaagttacaacatatctacacaaccagttggcaacacggactccatattttcaacgtttgaagatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="48886" stop="50182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49186" g_stop="49518" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49519" i_stop="49752" i_length="234">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49753" g_stop="49882" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="463" r_length="130" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E358574" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49186" e_stop="49518"/>
          <exon e_start="49753" e_stop="49882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTACCATCCAAGAGTTGGCTACAAAGAAATTTGAGAAGCTAAGAATCAAGTATGACCGATCTGAAAAGGACGTCAAGTTAGAACAGAAGACAAAATATGGTTCTGTTGTCAGGAAGCAAATAAAGAAGCCGATGGTCTCGATGTTCCAGGAAAATGTTGGCTCTGATTTCTCATCAGGTGCCACTCTTGCTGCAGCTGGAGATAGCCACTATCTTAACAACACTCCTCTTGCTGGAGTGTCGGTGAAACCTTATGGTGTTGATGGGCTTGCTGAAGGAAATTCTTCACTGATAGATCAAAATGTAGACAAGGCAGAAGAATCACTATCAGGTACCATATATTATTATGGATCTTCAACAATAACCAAGATGCTATATTTGCGTAGTAACAGGGTCGCTTCCGTTCTATGTATTTTGCATTCCTATTTTGGCTTTTGACAATTTGAGCTTGAATTAATTAAGTATTACTACTTACTAGCTGATATTCCTCTTTCAGCTTTTTCTTCCTTGTTCTTTGTTGCATGTGTTACTTGCTTTTTAAGTTTCTCTGCTTAACTTATTGCAGGGAAGGGTCCTCTATCCAGATTTGGAAGGAAATTAACTGTGCCTGATGAGAACCGTCGTGGAAGTTACAACATATCCACACAACCAGTTGGCAACACGGACTCCATATTTTCAACGTTTGAAGATGAAAG</genome_strand>
        <mrna_strand>CACGTACTATCCAAGAGTTGGCTACAAAGAAATTTGGGGGGCTAATAATCAAGTATGACCGATCTGAAAAGGACGTCAAGTTAGAACAGAAGACAAAATATGGTTCTGTTGTCAGGAAGCAAATAAAGAAGCCGATGGTCTCGATGTTCCAGGAAAATGTTGGCTCTGATTTCTCATCAGGTGCCACTCTTGCTGCAGCTGGAGATAGTCACTATCTTAACAACACTCCTCTTGCTGGAGTGTCTGTGAAACCTTATGGTGTTGATGGGCTTGCTGAAGGAAATTCTTCACTGATAGATCAAAACGTAGACAAGGCAGAAGAATCACTATCAG..........................................................................................................................................................................................................................................GGAAGGGTCCTCTATCCAGATTTGGAAGGAAATTAACGGTGCCTGATGAGAATCGTCGTGGAAGTTACAACATATCTACACAACCAGTTGGCAACACGGACTCCATATTTTCAACGTTTGAAGATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358695" ref_strand="+" ref_description="SGN-E358695 [cLHT-22-B14]">
      <seq>cacgtaccatccaagagttggctacaaagaaatttgagaagctaagaatcaagtatgaccgatctgaaaaggacgtcaagttagaacagaagacaaaatatggttctgttgtcaggaagcaaataaagaagccgatggtctcgatgttccaggaaaatgttggctctgatttctcatcaggtgccactcttgctgcagctggagatagtcactatcttaacaacactcctcttgctggagtgtctgtgaaaccttatggtgttgatgggcttgctgaaggaaattcttcactgatagatcaaaacgtagacaaggcagaagaatcactatcagggaagggtcctctatccagatttggaaggaaattaacggtgcctgatgagaatcgtcgtggaagttacaacatatctacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="48886" stop="50136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49186" g_stop="49518" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49519" i_stop="49752" i_length="234">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49753" g_stop="49836" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="417" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E358695" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49186" e_stop="49518"/>
          <exon e_start="49753" e_stop="49836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTACCATCCAAGAGTTGGCTACAAAGAAATTTGAGAAGCTAAGAATCAAGTATGACCGATCTGAAAAGGACGTCAAGTTAGAACAGAAGACAAAATATGGTTCTGTTGTCAGGAAGCAAATAAAGAAGCCGATGGTCTCGATGTTCCAGGAAAATGTTGGCTCTGATTTCTCATCAGGTGCCACTCTTGCTGCAGCTGGAGATAGCCACTATCTTAACAACACTCCTCTTGCTGGAGTGTCGGTGAAACCTTATGGTGTTGATGGGCTTGCTGAAGGAAATTCTTCACTGATAGATCAAAATGTAGACAAGGCAGAAGAATCACTATCAGGTACCATATATTATTATGGATCTTCAACAATAACCAAGATGCTATATTTGCGTAGTAACAGGGTCGCTTCCGTTCTATGTATTTTGCATTCCTATTTTGGCTTTTGACAATTTGAGCTTGAATTAATTAAGTATTACTACTTACTAGCTGATATTCCTCTTTCAGCTTTTTCTTCCTTGTTCTTTGTTGCATGTGTTACTTGCTTTTTAAGTTTCTCTGCTTAACTTATTGCAGGGAAGGGTCCTCTATCCAGATTTGGAAGGAAATTAACTGTGCCTGATGAGAACCGTCGTGGAAGTTACAACATATCCACACAAC</genome_strand>
        <mrna_strand>CACGTACCATCCAAGAGTTGGCTACAAAGAAATTTGAGAAGCTAAGAATCAAGTATGACCGATCTGAAAAGGACGTCAAGTTAGAACAGAAGACAAAATATGGTTCTGTTGTCAGGAAGCAAATAAAGAAGCCGATGGTCTCGATGTTCCAGGAAAATGTTGGCTCTGATTTCTCATCAGGTGCCACTCTTGCTGCAGCTGGAGATAGTCACTATCTTAACAACACTCCTCTTGCTGGAGTGTCTGTGAAACCTTATGGTGTTGATGGGCTTGCTGAAGGAAATTCTTCACTGATAGATCAAAACGTAGACAAGGCAGAAGAATCACTATCAG..........................................................................................................................................................................................................................................GGAAGGGTCCTCTATCCAGATTTGGAAGGAAATTAACGGTGCCTGATGAGAATCGTCGTGGAAGTTACAACATATCTACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478262" ref_strand="+" ref_description="SGN-E478262 [cSTD-3-J10]">
      <seq>acacggactccatattttcaacgtttgaagatgaaagcaagcacctggtcactgttgggctttattctgatcatgcatatgctaggagccttgcccggtttgctgcaactctcggtcctgttgcatggcgagttgcatcccagaaaattgaacaggcattacctcctggattcaagtttggccgtgggtgggttggggaatatgagccacttccaacccccgttttggtgcttgagaactataccttgaaggaacctccattcttctccaagtctgtacgtaagtttggagctcaaaagaatgagaaaacatccgaggacgcaattgctccaaaagataaacctctttctaggcctatgttagaaggaaaatcaccatatcttggttcagctaagggtaagtccatggagagtggtttgaatgtcttgattcccacgaaggaactatctcctagggaggtcaatctagaaggaaggtcatcgtttctttcttctggaaagaaacctgctgtttgtgctagccccagataccagcatcctgatttgcaatccagaaatttcaatgaacctgataaaaagatccatttcaaatctgaacctgagaaaaagatcaatttcaaaactgaacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="49546" stop="50834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49846" g_stop="49898" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49899" i_stop="49974" i_length="76">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49975" g_stop="50528" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="607" r_length="554" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E478262" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49846" e_stop="49898"/>
          <exon e_start="49975" e_stop="50528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGGACTCCATATTTTCAACGTTTGAAGATGAAAGCAAGCACCTGGTCACTGTGTGTACCACATAACTAGTTTTATTTCCATTTGGTTATTGTTTTCCTCTTTTGTAATTTTCCTCTGTGTATTTAGGTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTAGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATATGAGCCACTTCCAACCCCAGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCCGTACATAAGTTTGGAGCTCAAAAGAATGAGAAAACATCCGAGGACGCAATTGCTCCAAAAGATAAACCTCTTTCTAGGCCTCTATTAGGAGGAAAATCATCATATCTTGGTTCAACTAAGGGTAAGCCTATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAGCAATCTCCTAGGGAGGTCAATCTAGAAAGGAGGTCATCGTTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCTCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGCTAAAAAGATCCATTTCAAATCTGAACCTGATAAAAA</genome_strand>
        <mrna_strand>ACACGGACTCCATATTTTCAACGTTTGAAGATGAAAGCAAGCACCTGGTCACT............................................................................GTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTTGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATATGAGCCACTTCCAACCCCCGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCTGTACGTAAGTTTGGAGCTCAAAAGAATGAGAAAACATCCGAGGACGCAATTGCTCCAAAAGATAAACCTCTTTCTAGGCCTATGTTAGAAGGAAAATCACCATATCTTGGTTCAGCTAAGGGTAAGTCCATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAACTATCTCCTAGGGAGGTCAATCTAGAAGGAAGGTCATCGTTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCCCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGATAAAAAGATCCATTTCAAATCTGAACCTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441008" ref_strand="+" ref_description="SGN-E441008 [cSTA-28-J12]">
      <seq>gtttaggttgggctttattctgatcatgcatatgctaggagccttgcccggtttgctgcaactctcggtcctgttgcatggcgagttgcatcccagaaaattgaacaggcattacctcctggattcaagtttggccgtgggtgggttggggaatacgagccacttccaacccccgttttggtgcttgagaactataccttgaaggaacctccattcttctccaagtctgtacataagtttggagctcaaaagaatgagaaaacatctgaggatgcaattactccaaaagataaacctctttctaggcctatgttagaaggaaaatcaccatatcttggttcagctaagggtaagtccatggagagtggtttgaatgtcttgattcccacgaaggaacaatctcctagggaggtcaatctagaaggaaggtcatcatttctttcttctggaaagaaacctgctgtttgtgctagccccagataccagcatcctgatttgcaatccagaaatttcaatgaacctgataaaaagatccatttcaaatctgaagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="49670" stop="50822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49969" g_stop="50523" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E441008" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49969" e_stop="50523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGGTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTAGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATATGAGCCACTTCCAACCCCAGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCCGTACATAAGTTTGGAGCTCAAAAGAATGAGAAAACATCCGAGGACGCAATTGCTCCAAAAGATAAACCTCTTTCTAGGCCTCTATTAGGAGGAAAATCATCATATCTTGGTTCAACTAAGGGTAAGCCTATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAGCAATCTCCTAGGGAGGTCAATCTAGAAAGGAGGTCATCGTTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCTCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGCTAAAAAGATCCATTTCAAATCTGAACCTGAT</genome_strand>
        <mrna_strand>GTTTAGGTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTTGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATACGAGCCACTTCCAACCCCCGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCTGTACATAAGTTTGGAGCTCAAAAGAATGAGAAAACATCTGAGGATGCAATTACTCCAAAAGATAAACCTCTTTCTAGGCCTATGTTAGAAGGAAAATCACCATATCTTGGTTCAGCTAAGGGTAAGTCCATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAACAATCTCCTAGGGAGGTCAATCTAGAAGGAAGGTCATCATTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCCCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGATAAAAAGATCCATTTCAAATCTGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538519" ref_strand="+" ref_description="SGN-E538519 [TUS-57-M12]">
      <seq>ggagagcagtgaataacaacctagacactacaccagcagcgcatttaactgctgatagcgttccaaccgtgagaaaagttgcaggtttctttcaccaagaacaggagcagggccttagtgaccctgttcagttgatgagaatgttgtctgaaaaggctcaaaatcaacagaactctttgagtcagtccctaactgatgcttctccaatttcccctgtgactccatctgtgaggaaggatgattcaggaaatgccgccgccgccgctgcccgagcatggatgtcagttggggcaggaggtttcagacaaggcatggaaacatcaagcatgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaacatcacgagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtacctcatcctgcgagagtgggcagtgaagctcaatttcagaatcctcaaatgattttccgccaatcaatacctgcggacttgtctaggttccaggtacaacctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaaccgttttggttgattctcagcagccagacctggccttgcaattatgaaaccaagcaatttctgataaaaatatttgaacaggttcaaacatacaagagcctttggatcttttggctggcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50429" stop="51835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50729" g_stop="51535" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E538519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50729" e_stop="51535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGCAGTGAATAACAACCTAGACACTACACCAGCAGCGCATTTAACTGCTGATAGCGTTCCAACCGTGAGAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGT</genome_strand>
        <mrna_strand>GGAGAGCAGTGAATAACAACCTAGACACTACACCAGCAGCGCATTTAACTGCTGATAGCGTTCCAACCGTGAGAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329785" ref_strand="+" ref_description="SGN-E329785 [cTOD-3-I4]">
      <seq>agtgaataacaacctagacactacaccagcagcgcatttaactgctgatagcgttccaaccgtgagaaaagttgcaggtttctttcaccaagaacaggagcagggccttagtgaccctgttcagttgatgagaatgttgtctgaaaaggctcaaaatcaacagaactctttgagtcagtccctaactgatgcttctccaatttcccctgtgactccatctgtgaggaaggatgattcaggaaatgccgccgccgccgctgcccgagcatggatgtcagttggggcaggaggtttcagacaaggcatggaaacatcaagcatgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaacatcacgagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtacctcatcctgcgagagtgggcagtgaagctcaatttcagaatcctcaaatgattttccgccaatcaatacctgcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50436" stop="51576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50736" g_stop="51276" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E329785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50736" e_stop="51276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATAACAACCTAGACACTACACCAGCAGCGCATTTAACTGCTGATAGCGTTCCAACCGTGAGAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGAC</genome_strand>
        <mrna_strand>AGTGAATAACAACCTAGACACTACACCAGCAGCGCATTTAACTGCTGATAGCGTTCCAACCGTGAGAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271548" ref_strand="+" ref_description="SGN-E271548 [cLEM-23-K4]">
      <seq>gaaaagttgcaggtttctttcaccaagaacaggagcagggccttagtgaccctgttcagttgatgagaatgttgtctgaaaaggctcaaaatcaacagaactctttgagtcagtccctaactgatgcttctgcaattttccctgtgactccatctgtgagggaggatgattcttgaaatgccgccgccgccgctgcccgagcatggatgtcagttggggcaggaggtttcagacaaggcatggaaacatcaagcatgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtgcagccacaaacatcacgagttcggggtgaacatcctgcatcagccatgcactttcaggctgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50501" stop="51474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="51174" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E271548" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="51174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAAC</genome_strand>
        <mrna_strand>GAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTGCAATTTTCCCTGTGACTCCATCTGTGAGGGAGGATGATTCTTGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTGCAGCCACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCCATGCACTTTCAGGCTGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466639" ref_strand="+" ref_description="SGN-E466639 [cPRO-25-I18]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcactcatcaattggagtcactgcttcatttatttttttgggaatgtccgaggtattatttctcactggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50747" stop="52004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51047" g_stop="51715" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E466639" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51047" e_stop="51715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTAT</genome_strand>
        <mrna_strand>CAGCAAGCTTGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGC-ACTCATCAATTGGAGTC-ACTGCTTCATTTATTTTTTTGGGAATGTCCGAGGTATTATTTC-TCACTGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435604" ref_strand="+" ref_description="SGN-E435604 [STM-61-F24]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaaagtggcaactcatcaattggagtncactgcttcatttatttttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50747" stop="51983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51047" g_stop="51683" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E435604" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51047" e_stop="51683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGG</genome_strand>
        <mrna_strand>CAGCAAGCTTGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAAGTGGCAACTCATCAATTGGAGTNCACTGCTTCATTTATTTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466645" ref_strand="+" ref_description="SGN-E466645 [cPRO-25-K10]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50747" stop="51972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51047" g_stop="51672" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E466645" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51047" e_stop="51672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTT</genome_strand>
        <mrna_strand>CAGCAAGCTTGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466715" ref_strand="+" ref_description="SGN-E466715 [cPRO-25-J12]">
      <seq>cagcaagcttgcagaatagtcatatttctgctgattcattgtataacccttctcgcaatgtccagcaacaaatttcactagttcggggtgaacatcctgcatcagcaatgcactttcaggctgagaacagtagtccacttcatgcttttgtgcctcatcctgcaagagtgggcagtgaagctcaatttcagaatccgcaaatgattttccgccaatcaatacctgctgacttgtctaggttccaggtacaatctgcttggcaggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaanggcttgatatcgggtctcatttcgttgaactttaagtgggcactcatcaattggagtcaactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50747" stop="51967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51047" g_stop="51667" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E466715" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51047" e_stop="51667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTT</genome_strand>
        <mrna_strand>CAGCAAGCTTGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAATTTCACTAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTGCCTCATCCTGCAAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCGCAAATGATTTTCCGCCAATCAATACCTGCTGACTTGTCTAGGTTCCAGGTACAATCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAANGGCTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTGGGC-ACTCATCAATTGGAGTCAACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538518" ref_strand="+" ref_description="SGN-E538518 [TUS-57-M12](-)">
      <seq>tttccgccaatcaatacctgcggacttgtctaggttccaggtacaacctgcttgcagggggtttaatcaaccagcacagccaaggcagaagcaggattccctcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaaccgttttggttgattctcagcagccagacctggccttgcaattatgaaaccaagcaatttctgataaaaatatttgaacaggttcaaacatacaagagcctttggatcttttggctggcacgtctaaatcttctttttgggcatcactgcttcagcatactactagcatctacctgtaattgctgaaggctttgatatcggatctcatttcgttgaactttaagttggcaactcaacaattggagtcaactgcttcatttatttttttgggatgttccgaggtattatttctttatttgctatgttgtagtggtggagaaggcaatagatgtagttcaggtttaggataggcagcaggcacaactggaggatcactgtccaggtcacgaatcgtggatcgtttcatgtcaatcactgacttggaattgcgatttagatagctgaagaagtaagcatattacattaatactagttcgttcgtttgttccagtgtttgctatatggtcatttacggataggaatgctttaatttattgtacattggagtaaggtgggactgatctttggagtttttgtcatttttacttcaatcattgtagttctacctcagtttcctccttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50952" stop="52335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51252" g_stop="52033" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="783" polyA_stop="794"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E538518" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51252" e_stop="52033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATCATTGTAGTTCTACCTCAGTTTCCTCCTTA</genome_strand>
        <mrna_strand>TTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGCAGGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATCATTGTAGTTCTACCTCAGTTTCCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435605" ref_strand="-" ref_description="SGN-E435605 [STM-61-F24]">
      <seq>aggttccaggtacaatctgctnggcagggtttaatcaaccagcacagccaaggcagaagcaggattccttcccccctgacttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcatttatttttttgggatgttccgaggtattatttcttcactggctatgttgtagtgatggaaaaggcaatagatctagttcaggtttaggataggcagcaggcacaactggaggatcactgtccaggtcacaaatcgtggatcgtttcatgtcaatcactgacttggaattgcgatttagatagctgaagaagtaagcatattacattaatactagttcgttcgtttgttgcagtgtttgccatatggtcatttactgatagaaatgctttaattcattgtacattggagtaaggtggcactagtctttggagtttttgttatttttacttcaattattgtagttctacctcattttcctccttactcganctatatgtaatggcgtaaatttcagagaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="50983" stop="52380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51283" g_stop="52038" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="783" polyA_stop="795"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E435605" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51283" e_stop="52038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATCATTGTAGTTCTACCTCAGTTTCCTCCTTACACCA</genome_strand>
        <mrna_strand>AGGTTCCAGGTACAATCTGCTNGGCA-GGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCTTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTCACTGGCTATGTTGTAGTGATGGAAAAGGCAATAGATCTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACAAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTGCAGTGTTTGCCATATGGTCATTTACTGATAGAAATGCTTTAATTCATTGTACATTGGAGTAAGGTGGCACTAGTCTTTGGAGTTTTTGTTATTTTTACTTCAATTATTGTAGTTCTACCTCATTTTCCTCCTTACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617151" ref_strand="+" ref_description="SGN-E617151 [90625]">
      <seq>acttaaacattagtttccagtcatctgggtctcctggtcgtccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttgggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcatttatttttttgggatgttccgaggtattatttcttcactggctatgttgtagtgatggaaaaggcaatagatctagttcaggtttaggataggcagcaggcacaactggaggatcactgtccaggtcacaaatcgtggatcgtttcatgtcaatcactgacttggaattgcgatttagatagctgaagaagtaagcatattacattaatactagttcgttcgtttgttgcagtgtttgccatatggtcatttactgatagaaatgctttaattcattgtacattggagtaaggtgggactagtctttggagttttggttatttttacttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="51062" stop="52303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51362" g_stop="52004" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E617151" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51362" e_stop="52004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATC</genome_strand>
        <mrna_strand>ACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGAT-AAAATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTGGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTCACTGGCTATGTTGTAGTGATGGAAAAGGCAATAGATCTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACAAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTGCAGTGTTTGCCATATGGTCATTTACTGATAGAAATGCTTTAATTCATTGTACATTGGAGTAAGGTGGGACTAGTCTTTGGAGTTTTGGTTATTTTTACTTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576092" ref_strand="+" ref_description="SGN-E576092 [59255]">
      <seq>tccatcttcaactgttttggttgattctcagcagccagacctggccttgcaattatgagaccaagcaatttctgataaaatatttgaagaggtctgaacctacaagagcctttggatcttttggctggcatgtctgaatcttctttttcggcatcactgcttcagcaaactactagcatctgcctgtaattgctgaaggctttgatatcgggtctcatttcgttgaactttaagttggcaactcatcaattggagtcaactgcttcatttatttttttgggatgttccgaggtattatttcttcactggctatgttgtagtgatggaaaaggcaatagatctagttcaggtttaggataggcagcaggcacaactggaggatcactgtccaggtcacaaatcgtggatcgtttcatgtcaatcactgacttggaattgcgatttagatagctgaagaagtaagcatattacattaatactagttcgttcgtttgttgcagtgtttgccatatggtcatttactgatagaaatgctttaattcattgtacattggagtaaggtggcactagtctttggagttttgttatttttacttcaattattgtagttctacctcattttcctccttactcgactatatgtaatggcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="+" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="51102" stop="52338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51402" g_stop="52038" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="+" ref_id="SGN-E576092" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51402" e_stop="52038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATCATTGTAGTTCTACCTCAGTTTCCTCCTTACACCA</genome_strand>
        <mrna_strand>TCCATCTTCAACTGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAGACCAAGCAATTTCTGATAA-AATATTTGAAGAGGTCTGAACCTACAAGAGCCTTTGGATCTTTTGGCTGGCATGTCTGAATCTTCTTTTTCGGCATCACTGCTTCAGCAAACTACTAGCATCTGCCTGTAATTGCTGAAGGCTTTGATATCGGGTCTCATTTCGTTGAACTTTAAGTTGGCAACTCATCAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTCACTGGCTATGTTGTAGTGATGGAAAAGGCAATAGATCTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACAAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTGCAGTGTTTGCCATATGGTCATTTACTGATAGAAATGCTTTAATTCATTGTACATTGGAGTAAGGTGGCACTAGTCTTTGGAG-TTTTGTTATTTTTACTTCAATTATTGTAGTTCTACCTCATTTTCCTCCTTACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418161" ref_strand="+" ref_description="SGN-E418161 [STM-27-A13]">
      <seq>accaattctattgtttctctctgaaatttacgccattacatatagttgagaacccacggatgtaaggaggaaaatgaggtagaactacaataattgaagtaaaaatgacaaaaactccaaaggctagtcccaccttactccaatgtacaatgaattaaagcatttctatcagtaaatgaccatatagcaaacactggaacaaacgaacgactagtattaatgtaatatgcttacttcttcagctatctaaatcgcaattccaagtcagtgattgacatgaaacgatccacgatttgtgacctggacagtgatcctccagttgtgcctgctgcctatcctaaacctgaactagatctattgcctcttccaccactacaacataaccagtgaagaaataataccttggaacatcccaaaaaaataaatgaagcggttgactccaattgatgagttgccaacttaaagttcaacgaaatgagacccgatatcaaagccttcagcaattacaggcagatgctagtagtttgctgaagcagtgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="52380" stop="51252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52095" g_stop="51552" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E418161" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52095" e_stop="51552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATACTTTGGAATTTCTCTGAAATTTACGCCATTACATGTAGACGAGAACCCGCTGGTGTAAGGAGGAAACTGAGGTAGAACTACAATGATTGAAGTAAAAATGACAAAAACTCCAAAGATCAGTCCCACCTTACTCCAATGTACAATAAATTAAAGCATTCCTATCCGTAAATGACCATATAGCAAACACTGGAACAAACGAACGAACTAGTATTAATGTAATATGCTTACTTCTTCAGCTATCTAAATCGCAATTCCAAGTCAGTGATTGACATGAAACGATCCACGATTCGTGACCTGGACAGTGATCCTCCAGTTGTGCCTGCTGCCTATCCTAAACCTGAACTACATCTATTGCCTTCTCCACCACTACAACATAGCAAATAAAGAAATAATACCTCGGAACATCCCAAAAAAATAAATGAAGCAGTTGACTCCAATTGTTGAGTTGCCAACTTAAAGTTCAACGAAATGAGATCCGATATCAAAGCCTTCAGCAATTACAGGTAGATGCTAGTAGTATGCTGAAGCAGTGATGCC</genome_strand>
        <mrna_strand>ACCAATTCTATTGTTTCTCTCTGAAATTTACGCCATTACATATAGTTGAGAACCCACGGATGTAAGGAGGAAAATGAGGTAGAACTACAATAATTGAAGTAAAAATGACAAAAACTCCAAAGGCTAGTCCCACCTTACTCCAATGTACAATGAATTAAAGCATTTCTATCAGTAAATGACCATATAGCAAACACTGGAACAAACGAACG-ACTAGTATTAATGTAATATGCTTACTTCTTCAGCTATCTAAATCGCAATTCCAAGTCAGTGATTGACATGAAACGATCCACGATTTGTGACCTGGACAGTGATCCTCCAGTTGTGCCTGCTGCCTATCCTAAACCTGAACTAGATCTATTGCCTCTTCCACCACTACAACATAACCAGTGAAGAAATAATACCTTGGAACATCCCAAAAAAATAAATGAAGCGGTTGACTCCAATTGATGAGTTGCCAACTTAAAGTTCAACGAAATGAGACCCGATATCAAAGCCTTCAGCAATTACAGGCAGATGCTAGTAGTTTGCTGAAGCAGTGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714625" ref_strand="+" ref_description="SGN-E714625 [FB11DH10]">
      <seq>cggtgcctgagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggagttagtggtggagtaagcggcagcggaagaattggagctggtgtaggcggcagtggcggtgttggcgataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcattttaatttcatgttatgtgctttgtgaaatgttgtgagtaggatgtaatgatataatgtaatgttggttaataaattagtgtaatttaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="58208" stop="56580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57908" g_stop="57438" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57437" i_stop="57068" i_length="370">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57067" g_stop="57052" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="487" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E714625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57908" e_stop="57438"/>
          <exon e_start="57067" e_stop="57052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGAGCTTGATTAAATTAGAATTTGTATCGAAAAATTTCATATTAGAAGAAAAGTGATTCTTAATAAAGACGGCTCAAACCTGAAATCTCTTGATGAAGGATGTTATTCCATCACAACGATTAATTTCAGAGTTTATCTCCTTATTATATCAAGATAGTATTTTTTTAAAGATAAAAACTTAATTTAAAATAAATAGATCATAATTTTGAGAGTAAATTAAATGAAGTAAATAATTGATATATTAAAATAATAATATAGATATTGAAAATACAAAAAATATTATAAATTGAATTTTTATATTAATATAACAAAAAACACATATAAAATATCAATTAAAATGTATACTCTATAATTTAACTCAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CGGTGCCTGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTA..................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554882" ref_strand="+" ref_description="SGN-E554882 [cTSC-5-L19]">
      <seq>ccattagtggtggcgttagcgccggagtcggaggaaggttgggtatcggagctgggcccgtaagtggaggagctgaaggtagagttggcgttgggatcggtgccggagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggagttagtggtggagtaagcggcagcggaagaattggagctggtgtaggcggcagtggcggtgttggcgataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcattttaatttcatgttatgtgctttgtgaaatgttgtgagtaggatgtaatgatataatgtaatgttggttaataaattagtgtaatttaatttagtgtttggtatctaatataataaaaaacttatgcaagatgatctaatttttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="58305" stop="57126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58005" g_stop="57423" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E554882" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58005" e_stop="57423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGA</genome_strand>
        <mrna_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555563" ref_strand="+" ref_description="SGN-E555563 [cTSC-5-H1]">
      <seq>ccattagtggtggcgttagcgccggagtcggaggaaggttgggtatcggagctgggcccgtaagtggaggagctgaaggtagagttggcgttgggatcggtgccggagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggagttagtggtggagtaagcggcagcggaagaattggagctggtgtaggcggcagtggcggtgttggcgataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcattttaatttcatgttatgtgctttgtgaaatgttgtgagtaggatgtaatgatataatgtaatgttggttaataaattagtgtaatttaatttagtgtttggtatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="58305" stop="56572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58005" g_stop="57423" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="618"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E555563" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58005" e_stop="57423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGA</genome_strand>
        <mrna_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722468" ref_strand="+" ref_description="SGN-E722468 [FC17BE03]">
      <seq>aatcggccgaaatgaccaaaacttttattatattattatagttataactctttttggataatattaaatgtttaaattgctagaaaaaaatatgtgggctagaattttattacttctttttgtgttttcacttggagcttttcttgtttgtggtagaaatttaccaagtgaaaatgagtctcttgttgaaaaaaaatatggagttactgattatcaaggtggattaaatgataatattggagctggtggatttgctgctggtgagccaactgggccatctggaccaactgggccgggtctaggaggatccattagtggtggcgttagcgccggagtcggaggaaggttgggtatcggagctgggcccgtaagtggaggagctgaaggtagagttggcgttgggatcggtgccggagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggatttagtggtggagtaagcggcagcggaaaaattggagctggtgtaggcggcagtggcggtgttggcaataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcatttttaatttcatgttatgtgctttgtgaaatgttgtgagtaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59336" stop="57187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59030" g_stop="58788" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="260" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58787" i_stop="58054" i_length="734">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58053" g_stop="57487" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="828" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E722468" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59030" e_stop="58788"/>
          <exon e_start="58053" e_stop="57487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTGGTAATGGAATTTAGAAAACTTCATGTATAAAAGTACTTTGAAATTTTTAATATTTTACTAAAATCGAAGATAAATTTAAATTTTTTATAAATTAAGAGATATGATGGTTACAATCTCCAAAGAACCTTCTTTTAACTCGATATATTATTCGTGAGAGTTAGTGCAACACGTAATATTTAATAAGAAAGGTTAAAAATTTATTTTTTTGTCCATAAAAAAGATTAGAGATCGATTTTTTTTTATCTAACACTTGTTTAGTTGAGTTTGTTGCATCTAACTAGCCTGTAAATTACATTTTGTTAAGTTAGTGCTAATGATAGTATCTATAATTTGAAAGGTTAGAGATAGATTCTCCTTATTAACACTTTTTTTATTTGAGTTTGTTGCTTCGTATTAATATCGTTTCCGTTTCATTTTATATGTCACATTTCGGATTTCAAGAATTAAATAAGTCTATTTTTTATCGTATATTTTTCATAAATCTTTTCAATATTTTAAATTATCAATTATTATAATTTTTAATATTTTTTTACTTAATTTACAAATACATAAGTTTCATTTCAAGAAAATTAAAAATTTCATGCGCAAATTTTTGACTGACAAAATATAAAATATGTTATATAAATTGAGACAAAAAAAATATAATTTAGTTGCTACATTATTTTGTTAGCAATTAGACGATTTAACGATAAAATTCATAGCTAATTTCATAATTCGTTGTGTTTATGAAACAGGTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCA-TTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGAT</genome_strand>
        <mrna_strand>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAAATGATAATATTGGAGCTGGTGGATTTGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGATTTAGTGGTGGAGTAAGCGGCAGCGGAAAAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCAATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723385" ref_strand="+" ref_description="SGN-E723385 [FC20BD02]">
      <seq>ccaatcggccgaattcccatggggatccgatcattatcttcaaaattacaatcaaaaaatgattaactctaagttttttgttctcatagttctatattctctcttttgctttcttagtgtcacgaagtttgtctattctaaggtcgactcaaacgttgtaaagtctaccgcaaaaccatggacagattccaagaactacatgcttggagaagagaagtcatttcatcatcttgttgcctatgctgaaggacctagtggaggtattggggttgaaatgtcaagaggaggttctagttctgattctggttctggttatgatgaaggtggacaaggtggaggtgtaggtggaggaggaagtggtgaaggaagaggaaagggttcaggttatggttatggttatggggaagggtatggtgaaggcagtggggttggaggatatggaggtgggggtggagaaggaagtcgtgaatgaacaggagatggttatggttatggttctggggaagggtatggtgaaggagctagtggtgggggatatggaggtggtgaaggtagtgtcgagggatcaggatatggttatggttctggttctggggaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="65916" stop="64393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65614" g_stop="65493" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="154" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65492" i_stop="65140" i_length="353">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65139" g_stop="64693" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="601" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E723385" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65614" e_stop="65493"/>
          <exon e_start="65139" e_stop="64693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCTTCAAAATTACAATCAAAAAATGATTAACTCTAAGTTTTTTGTTCTCATAGTTCTATATTCTCTCTTTTGCTTTCTTAGTGTCACGAAGTTTGTCTATTCTAAGGTCGACTCAAACGTAAGCGCCACTAAAACTATCGTTTTAAGCACAAATATTTTTAAAATGTTATGAAATTTACTGTTGTTATATTGACTATGTGATGTGTATATATATAATTGTCATTAATAAGCTTTCAAATACATATTTGTAAATGTTCTTTTTCCTTTTTGGATATATATGGTGTAAACTTACATTACAAGCCTTGTTCTTCAACTTTTGAACTTTTTTCTCCTTTATGTGTGTGCATCAATTCATTTCATTTTTCTACTTTTAATGATCATATTGGCTTTAGTTTCATGTCGATGATTAATTACTTTTTCGACATTATGAGATAAATTCAAGATATTTTATTATTGTTTTACTTTATATAGGTTGTAAAGTCTACCGCAAAACCATGGACAGATTCCAAGAACTACATGCTTGGAGAAGAGAAGTCATTTCATCATCTTGTTGCCTATGCTGAAGGACCTAGTGGAGGTATTGGGGTTGAAATGTCAAGAGGAGGTTCTAGTTCTGATTCTGGTTCTGGTTATGATGAAGGTGGACGAGGTGGAGGTGTAGGTGGAGGAGGAAGTGGTGAAGGAAGAGGAAAGGGTTCAGGTTATGGTTATGGTTATGGGGAAGGGTATGGTGAAGGCAGTGGGGGTGGAGGATATGGAGGTGGGGGTGGAGAAGGAAGTCGTGAAGGAACAGGAGATGGTTATGGTTATGGTTCTGGGGAAGGGTATGGTGAAGGAGCTAGTGGTGGGGGATATGGAGGTGGTGAAGGTAGTGGCGAGGGATCAGGAGATGGTTATGGTTCTGGTTCTGGGGAAGGG</genome_strand>
        <mrna_strand>ATTATCTTCAAAATTACAATCAAAAAATGATTAACTCTAAGTTTTTTGTTCTCATAGTTCTATATTCTCTCTTTTGCTTTCTTAGTGTCACGAAGTTTGTCTATTCTAAGGTCGACTCAAAC.................................................................................................................................................................................................................................................................................................................................................................GTTGTAAAGTCTACCGCAAAACCATGGACAGATTCCAAGAACTACATGCTTGGAGAAGAGAAGTCATTTCATCATCTTGTTGCCTATGCTGAAGGACCTAGTGGAGGTATTGGGGTTGAAATGTCAAGAGGAGGTTCTAGTTCTGATTCTGGTTCTGGTTATGATGAAGGTGGACAAGGTGGAGGTGTAGGTGGAGGAGGAAGTGGTGAAGGAAGAGGAAAGGGTTCAGGTTATGGTTATGGTTATGGGGAAGGGTATGGTGAAGGCAGTGGGGTTGGAGGATATGGAGGTGGGGGTGGAGAAGGAAGTCGTGAATGAACAGGAGATGGTTATGGTTATGGTTCTGGGGAAGGGTATGGTGAAGGAGCTAGTGGTGGGGGATATGGAGGTGGTGAAGGTAGTGTCGAGGGATCAGGATATGGTTATGGTTCTGGTTCTGGGGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539446" ref_strand="+" ref_description="SGN-E539446 [TUS-59-D10](-)">
      <seq>gaagctgttcagtgattgtaaagaatatgtcattctcacctgtcaaagaagcaactgggttgacaaagttgacgaattgtgccaggtctacgagactgttgagacaatggtactcagcccagatgaagttataaggatcacctttcaacctgaagaaccttcagctgcacccgcgaatgaactaaaaagtcgattcaaaaggcttagcctcatattcagaaacaaggataagctatcaccgcgagaccagaagaaccaggaggagagtccattacgccaaccattctcatccatattttcaaagaaacctccaaagcccgacagttcatctccagataaacctgttacttccgtcgaaaatgactggacaattgtataatcacagttttttattgttgttcattgtgtaactataaatatatgttactagtttaggcagagacccgatgaatattccagcattgtgagtttcagctgatgcttgtgacgaaacagtttatggaagaaccttagagtattttatatgatggaaatttttttcagaaaaaaaagaaaaaaaaaaaactcgaggggggcccgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="70578" stop="68770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70278" g_stop="70194" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70193" i_stop="69537" i_length="657">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69536" g_stop="69071" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="549" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="564"/>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E539446" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70278" e_stop="70194"/>
          <exon e_start="69536" e_stop="69071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGTTCAGTGATTGTAAAGAATATGTCATTCTCACCTGTCAAAGAAGCAACTGGGTTGACAAAGTTGACGAATTGTGCCAGGTATGTTTTATCTAGCTTGGTGATGGTTAATAAGCTTGCTGACTCGTGGTGCTGGATACAAGCGCAAGTCTTGCGCCTGAGACATGTTTGTGCATTTGACTTCCTCTCACTTGTTTATAAAGAACTACTTGCTTTCAGCCCATAGGGCTTTAATTCTCTAGTAAGAGAACAACACATGTCGTGTAGGTTAGGTACATCATAAAAATACTGAAGTTGAAGCGGTGAATTTTACCAGCTCATTATCCACCGAGTTTTGAATTGTGTCCTTGGGGAATTTCTCAATTATAAATTTAAAGAAAAGAAGAAGAAAATATCTCAGGGATACAAGGTTCATACGGAATCCACCGAAACCTATTGATTCCTATATAGGACAGTTGCTAGGCAGCACCACTACTCCTATCCCATCAGAGTGGGTGGGTGGGGTGGGGTTGAGGGGTGAGACAGGGGTGGGGGGTAGGGATGGAGAAATGGAAGCAGCATTCTGGTGCTTGTTATACATTCTTTCTGCAATTTTATTAGCTTTATAGTGCTGGATGACGCTACATAAAATCATTGATTTGGACCCAAAATTTGCAAAAGTAGCATTTGTGAATGTCAGATTATTACTATAATTAAGTTGTTATGCCGTGATGAAGTTACAGTAGAACTTTTTACTAGGTCTACGAGACTGTTGAGACAATGGTACTCAGCCCAGATGAAGTTATAAGGATCACCTTTCAACCTGAAGAACCTTCAGCTGCACCCGCGAATGAACTAAAAAGTCGATTCAAAAGGCTTAGCCTCATATTCAGAAACAAGGATAAGCTATCACCGCGAGACCAGAAGAACCAGGAGGAGAGTCCATTACGCCAACCATTCTCATCCATATTTTCAAAGAAACCTCCAAAGCCCGACAGTTCATCTCCAGATAAACCTGTTACTTCCGTCGAAAATGACTGGACAATTGTATAATCACAGTTTTTTATTGTTGTTCATTGTGTAACTATAAATATATGTTACTAGTTTAGGCAGAGACCCGATGAATATTCCAGCATTGTGAGTTTCAGCTGATGCTTGTGACGAAACAGTTTATGGAAGAACCTTAGAGTATTTTATATGATGGAAATTATTTTTCATGAAAAAC</genome_strand>
        <mrna_strand>GAAGCTGTTCAGTGATTGTAAAGAATATGTCATTCTCACCTGTCAAAGAAGCAACTGGGTTGACAAAGTTGACGAATTGTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACGAGACTGTTGAGACAATGGTACTCAGCCCAGATGAAGTTATAAGGATCACCTTTCAACCTGAAGAACCTTCAGCTGCACCCGCGAATGAACTAAAAAGTCGATTCAAAAGGCTTAGCCTCATATTCAGAAACAAGGATAAGCTATCACCGCGAGACCAGAAGAACCAGGAGGAGAGTCCATTACGCCAACCATTCTCATCCATATTTTCAAAGAAACCTCCAAAGCCCGACAGTTCATCTCCAGATAAACCTGTTACTTCCGTCGAAAATGACTGGACAATTGTATAATCACAGTTTTTTATTGTTGTTCATTGTGTAACTATAAATATATGTTACTAGTTTAGGCAGAGACCCGATGAATATTCCAGCATTGTGAGTTTCAGCTGATGCTTGTGACGAAACAGTTTATGGAAGAACCTTAGAGTATTTTATATGATGGAAATT-TTTTTCA-GAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539448" ref_strand="+" ref_description="SGN-E539448 [TUS-59-D10]">
      <seq>ggtcttgtctcttatcaatttactgctagatgcaggacattttgctggaaggaaggttgattctgcaaatgcttcatctttgcctaaggatcttcatggtgctcctcctgaaagttttatcactaatcttgctgatgtaactggacgcatgaaatcattgcgtaaaatggcattattatggtgcaaaattgttgctgaattacggaggctgtggtctgaaggacaatatatccctggcattcctccagatcaaatcccggacctgaattcatgtcttttgtatcagcaactccaggttattaactgttgcatttccagaaaaaagcgacgcattgcagccactgaatcgttggattcggctgtcaggctaggaagttcaaaaacagatgttcttgctgatgacggcacccttcctgcaactcctgtcttgtatgctaaagttaacactggagaattaattcttcggctaggaatggacagcaaatctgatctaagaatgctggaaacgggtgaacctatatatacgccaataatgcaggaagaacctttgctaacggaagatctaattaaagaaacagaggagctggtgctccgaactgggagtcttggagctgggtgctctcaactcctatctgacatgcaggctttcaaggcagcaaaccctgngtgtatattagaagatttcgttagatggcattctcctcctgatttggatggatgtgatancattgatgggattaatgaaacccctgatgcntatgactcattgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="75447" stop="71772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75147" g_stop="75113" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75112" i_stop="74980" i_length="133">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74979" g_stop="74816" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="199" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74815" i_stop="73289" i_length="1527">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73288" g_stop="72950" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="538" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72949" i_stop="72860" i_length="90">
            <donor d_prob="0.327" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72859" g_stop="72795" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="603" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72794" i_stop="72356" i_length="439">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72355" g_stop="72307" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="652" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72306" i_stop="72193" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72192" g_stop="72072" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="773" r_length="121" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E539448" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75147" e_stop="75113"/>
          <exon e_start="74979" e_stop="74816"/>
          <exon e_start="73288" e_stop="72950"/>
          <exon e_start="72859" e_stop="72795"/>
          <exon e_start="72355" e_stop="72307"/>
          <exon e_start="72192" e_stop="72072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTCTCTTATCAATTTACTGCTAGATGCAGGTAGCTGCCAGTTTCTTCAATTATGTGGTGAAATATGATTCTGTATTAATTATAATAGTAATTTCTACTTGAACTATTTGGATTACCCTGTGTGATTTTAACTTCCACTGCAATATCTGCAAGATACTTTTAGGACATTTTGCTGGAAGGAAGGTTGATTCTGCAAATGCTTCATCTTTGCCTAAGGATCTTCATGGTGCTCCTCCTGAAAGTTTTATCACTAATCTTGCTGATGTAACTGGACGCATGAAATCATTGCGTAAAATGGCATTATTATGGTGCAAAATTGTTGCTGAAGTAAGTATACTCTACAAAACTATTTCATACTCAATTTTCTTAGCACAGAGGGATTCCTGCTGTCATTGGGGTATCTTTTGATCACTTCTCTACTTGTTGAATTACTTATATCACACACCAGCTTTTTCTTACATGAATATGCATTGAACTATCCGTCCTTTTGTTAAAGGAGTTGCTTCTGAAGAATACTAAAGCAGCATCACTTTTCACCCCTGATAGAATGTTTCAATTATATCATTCTGCTAAACTAGCTGGCTTTCTTGAGGGTAGTGAACTTGCCAAAAAGAAATTCTTCTGCAATGATCCTTGACCAGCAAGGCTTGTAGGGATTAGATTTTCATGTTTTGATGGTTAAGTTGGCTCTGTACTGCAAAATATTTAGTATATTAATGAATAACATCTTGATGGTCATCATGGTTAGAAGTAGTATGTTGTTGATTTAATTTATTTTATGCTTATTTTTATTTTCTTAGTGGTGATGATAGTGCTGGAGGTTGATTTTTTCTAGTAATTGATTACTATATTTGACCTGGAGTCAACTACTTATGACTAGGAGTGCACATGACTTCTTAAAAGATTGCAACCGGTTGATTTCTCTGGTAAAGTTCGGATTTATAATGTTAAAAGACAGTCCTTAAAATTATCTTATTTGTCCAAGTCTTGGTGGATAGAGTTAGCTGGTAACATGTGCTACTTCGAGGTAACAGGTGTCCCGTGGAATTAGTCGCGGTGCAGCAAGCTGGCCCAGACACCGTAGTTATAAAAATAATAAAAGAAGCCAATCTTTGGAATGACAAGATCCAAACCAACCAGAAAGACTTTCAACCTTTTTTCAACTTCTCTGTCCATTTACTCTAGGAAAAACCTAACTGCATTTGGACAAGACTTGCGAGTAGGAGTGACACTCTTCAAGCATAATTGTTGTAGAACAAACAAAGAAGACTCTGTTAAATTCTGCTCTTTATCCTTATTCCATTGTCTTTGTCTCAATAGCAAGAAAAACTGCCGACCCCTCCCCCCTCCCCAAACACAAATACCAACATACAAAGCTCCAAAGCTAATATATCTTGATAGTTAAGACTGCTAATCAAGTTGAATTTCATTTTCGAACCATAGTGATATACTATGACAGGTCTATATCCTTGTTTGAAAGTTTTTGCAAATTGAACCTCTTGTACTGTACTCCTCTTCTAATTTGTTTTTCTTTCTTTTCCTTTTTTTTTGTTAAGAAGGGTATAAGAGATCACTTGCATTCGTTACTATTTTATGGAGTTTATGGAACCCTTTTCAGATTTTGTAGCGTCTGCTAGTGCATTAATTCACTGGCCTCATTCTCTTAAGCTGCACTGACATAATTTCTTCACGAGTAGATATTGACCCCGTATTCAATTTGTCATAGATAGTGGATCCTTTTAAAAATAATATCATCATCTAGTTAGATCATTTCTAATTTAGTTGATGTGATGTGAACATAGTCTTGTAAATGCTCTAACTGAGTACCACATCTTCAATCTTCTTTGCATGCAGTTACGGAGGCTGTGGTCTGAAGGACAATATATCCCTGGCATTCCTCCAGATCAAATCCCGGACCTGAATTCATGTCTTTTGTATCAGCAACTCCAGGTTATTAACTGTTGCATTTCCAGAAAAAAGCGACGCATTGCAGCCACTGAATCGTTGGATTCGGCTGTCAGGCTAGGAAGTTCAAAAACAGATGTTCTTGCTGATGACGGCACCCTTCCTGCAACTCCTGTCTTGTATGCTAAAGTTAACACTGGAGAATTAATTCTTCGGCTAGGAATGGACAGCAAATCTGATCTAAGAATGCTGGAAACGGGTGAACCTATATATACGCCAATAATGCAGGTTCGTGGACAGGAGCAGATGTTGTGATACGAATTTGATACCTTCCACTTTAACTATTGATTGTTTATGACCATGAGCATATATATGCAGGAAGAACCTTTGCTAACGGAAGATCTAATTAAAGAAACAGAGGAGCTGGTGCTCCGAACTGGGAGGTAATGCCTTTAGTCTGTTTTGTTTTCAAGATCATGCTGCAAATGTCCATAAATGGAGACCAATCATTAATGGTAGCAGTTTAACACTTATTCTGCAAAAAACATTTACTTTACATATAACTTGCTTACACTAATATTTGCTCTCCACTAATCATCATTTTATCAACAAAAAAGAAAAGAAGCTGGCATTAATTATTGACGTTGTTCAAACTGTTCTCATTTGTCTTATTTTCTAGTTATTACAAATACATCAAGGAACTTACAGTTTTTTTTTTCTGTATTAAAGAATACAATCATCTGATTTCTTTTGTTCCTTGTTCTTCTCTTTGTTTCATACTTTTATGCTCACTGCTGCCCCTAATGCCTCAAATATTCCAACTTATACAAGTAGGATAATCTTGACCTTTTCATCTGAAATCCTCGTCTTTTCTGTTGTCAGTCTTGGAGCTGGGTGCTCTCAACTCCTATCTGACATGCAGGCTTTCAAGGTAAAGTTTCAGTAACAGAATCTGTAATTTAGAGTTTCGTGAAGTACCTTCACAAGCTGGCAATTTGGCAGTGTCTGACTGAAACTAACATGCAAATTTCCTGAACTCTACTAGGCAGCAAACCCTGGGTGTATATTAGAAGATTTCGTTAGATGGCATTCTCCTCCTGA-TTGGATGGAATGTGATACAATTGATGGAATTAATGAAACCCCTGATGCTAATGACTCATTGTCTG</genome_strand>
        <mrna_strand>GGTCTTGTCTCTTATCAATTTACTGCTAGATGCAG.....................................................................................................................................GACATTTTGCTGGAAGGAAGGTTGATTCTGCAAATGCTTCATCTTTGCCTAAGGATCTTCATGGTGCTCCTCCTGAAAGTTTTATCACTAATCTTGCTGATGTAACTGGACGCATGAAATCATTGCGTAAAATGGCATTATTATGGTGCAAAATTGTTGCTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGAGGCTGTGGTCTGAAGGACAATATATCCCTGGCATTCCTCCAGATCAAATCCCGGACCTGAATTCATGTCTTTTGTATCAGCAACTCCAGGTTATTAACTGTTGCATTTCCAGAAAAAAGCGACGCATTGCAGCCACTGAATCGTTGGATTCGGCTGTCAGGCTAGGAAGTTCAAAAACAGATGTTCTTGCTGATGACGGCACCCTTCCTGCAACTCCTGTCTTGTATGCTAAAGTTAACACTGGAGAATTAATTCTTCGGCTAGGAATGGACAGCAAATCTGATCTAAGAATGCTGGAAACGGGTGAACCTATATATACGCCAATAATGCAG..........................................................................................GAAGAACCTTTGCTAACGGAAGATCTAATTAAAGAAACAGAGGAGCTGGTGCTCCGAACTGGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGAGCTGGGTGCTCTCAACTCCTATCTGACATGCAGGCTTTCAAG..................................................................................................................GCAGCAAACCCTGNGTGTATATTAGAAGATTTCGTTAGATGGCATTCTCCTCCTGATTTGGATGG-ATGTGATANCATTGATGGGATTAATGAAACCCCTGATGCNTATGACTCATTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282306" ref_strand="+" ref_description="SGN-E282306 [cLER-18-A5]">
      <seq>gtcttgtctcttatcaatttactgctagatgcaggacattttgctggaaggaaggttgattctgcaaatgcttcatctttgcctaaggatcttcatggtgctcctcctgaaagttttatcactaatcttgctgatgtaactggacgcatgaaatcattgcgtaaaatggcattattatggtgcaaaattgttgctgaattaccgaggctgtggtctgaaggacaatatatccctggcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0175E07-3wAx7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0175E07.1" temp_strand="-" temp_description="C07HBa0175E07.1  AC216424.1 htgs_phase:1 submitted_to_sgn_as:gi|164498913|gb|AC216424.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0175E07, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="75446" stop="72944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75146" g_stop="75113" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75112" i_stop="74980" i_length="133">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74979" g_stop="74816" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="198" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74815" i_stop="73289" i_length="1527">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73288" g_stop="73244" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="243" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0175E07.1" gen_strand="-" ref_id="SGN-E282306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0175E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75146" e_stop="75113"/>
          <exon e_start="74979" e_stop="74816"/>
          <exon e_start="73288" e_stop="73244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTCTCTTATCAATTTACTGCTAGATGCAGGTAGCTGCCAGTTTCTTCAATTATGTGGTGAAATATGATTCTGTATTAATTATAATAGTAATTTCTACTTGAACTATTTGGATTACCCTGTGTGATTTTAACTTCCACTGCAATATCTGCAAGATACTTTTAGGACATTTTGCTGGAAGGAAGGTTGATTCTGCAAATGCTTCATCTTTGCCTAAGGATCTTCATGGTGCTCCTCCTGAAAGTTTTATCACTAATCTTGCTGATGTAACTGGACGCATGAAATCATTGCGTAAAATGGCATTATTATGGTGCAAAATTGTTGCTGAAGTAAGTATACTCTACAAAACTATTTCATACTCAATTTTCTTAGCACAGAGGGATTCCTGCTGTCATTGGGGTATCTTTTGATCACTTCTCTACTTGTTGAATTACTTATATCACACACCAGCTTTTTCTTACATGAATATGCATTGAACTATCCGTCCTTTTGTTAAAGGAGTTGCTTCTGAAGAATACTAAAGCAGCATCACTTTTCACCCCTGATAGAATGTTTCAATTATATCATTCTGCTAAACTAGCTGGCTTTCTTGAGGGTAGTGAACTTGCCAAAAAGAAATTCTTCTGCAATGATCCTTGACCAGCAAGGCTTGTAGGGATTAGATTTTCATGTTTTGATGGTTAAGTTGGCTCTGTACTGCAAAATATTTAGTATATTAATGAATAACATCTTGATGGTCATCATGGTTAGAAGTAGTATGTTGTTGATTTAATTTATTTTATGCTTATTTTTATTTTCTTAGTGGTGATGATAGTGCTGGAGGTTGATTTTTTCTAGTAATTGATTACTATATTTGACCTGGAGTCAACTACTTATGACTAGGAGTGCACATGACTTCTTAAAAGATTGCAACCGGTTGATTTCTCTGGTAAAGTTCGGATTTATAATGTTAAAAGACAGTCCTTAAAATTATCTTATTTGTCCAAGTCTTGGTGGATAGAGTTAGCTGGTAACATGTGCTACTTCGAGGTAACAGGTGTCCCGTGGAATTAGTCGCGGTGCAGCAAGCTGGCCCAGACACCGTAGTTATAAAAATAATAAAAGAAGCCAATCTTTGGAATGACAAGATCCAAACCAACCAGAAAGACTTTCAACCTTTTTTCAACTTCTCTGTCCATTTACTCTAGGAAAAACCTAACTGCATTTGGACAAGACTTGCGAGTAGGAGTGACACTCTTCAAGCATAATTGTTGTAGAACAAACAAAGAAGACTCTGTTAAATTCTGCTCTTTATCCTTATTCCATTGTCTTTGTCTCAATAGCAAGAAAAACTGCCGACCCCTCCCCCCTCCCCAAACACAAATACCAACATACAAAGCTCCAAAGCTAATATATCTTGATAGTTAAGACTGCTAATCAAGTTGAATTTCATTTTCGAACCATAGTGATATACTATGACAGGTCTATATCCTTGTTTGAAAGTTTTTGCAAATTGAACCTCTTGTACTGTACTCCTCTTCTAATTTGTTTTTCTTTCTTTTCCTTTTTTTTTGTTAAGAAGGGTATAAGAGATCACTTGCATTCGTTACTATTTTATGGAGTTTATGGAACCCTTTTCAGATTTTGTAGCGTCTGCTAGTGCATTAATTCACTGGCCTCATTCTCTTAAGCTGCACTGACATAATTTCTTCACGAGTAGATATTGACCCCGTATTCAATTTGTCATAGATAGTGGATCCTTTTAAAAATAATATCATCATCTAGTTAGATCATTTCTAATTTAGTTGATGTGATGTGAACATAGTCTTGTAAATGCTCTAACTGAGTACCACATCTTCAATCTTCTTTGCATGCAGTTACGGAGGCTGTGGTCTGAAGGACAATATATCCCTGGCATTCCT</genome_strand>
        <mrna_strand>GTCTTGTCTCTTATCAATTTACTGCTAGATGCAG.....................................................................................................................................GACATTTTGCTGGAAGGAAGGTTGATTCTGCAAATGCTTCATCTTTGCCTAAGGATCTTCATGGTGCTCCTCCTGAAAGTTTTATCACTAATCTTGCTGATGTAACTGGACGCATGAAATCATTGCGTAAAATGGCATTATTATGGTGCAAAATTGTTGCTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGAGGCTGTGGTCTGAAGGACAATATATCCCTGGCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>85</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="950" PGL_stop="56"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="950" e_stop="56"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="950" e_stop="56" e_length="895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="950" stop="285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="950" stop="317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="950" stop="328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="950" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="638" stop="56"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATGCCGAATAGTCATTATTTTTCCTGATTCCGTTTAATACCCTTTTTCCCAAAGTCCGGCAACAAACTTCACGAGTTCGGGGTGACCTTCCCTGCATCAGCAATGCATTTCAAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACTTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTCGCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTT</gDNA_template>
            <first_frame> A  C  R  I  V  I  I  F  P  D  S  V  *  Y  P  F  S  Q  S  P  A  T  N  F  T  S  S  G  *  P  S  L  H  Q  Q  C  I  S  R  L  R  T  V  V  H  F  M  L  L  Y  F  I  L  R  E  W  A  V  K  L  N  F  R  I  L  K  *  F  R  A  N  Q  Y  L  R  T  C  L  G  S  R  Y  N  L  L  G  R  G  L  I  N  Q  H  S  Q  G  R  S  R  I  P  S  P  L  T  *  T  L  V  S  S  H  L  G  L  L  V  V  H  L  Q  P  F  W  L  I  L  S  S  Q  T  W  P  C  N  Y  E  T  K  Q  F  L  I  K  I  F  E  Q  V  Q  T  Y  K  S  L  W  I  F  W  L  A  R  L  N  L  L  F  G  H  H  C  F  S  I  L  L  A  S  T  C  N  C  *  R  L  *  Y  R  I  S  F  R  *  T  L  S  W  Q  L  N  N  W  S  Q  L  L  H  L  F  F  W  D  V  P  R  Y  Y  F  F  I  C  Y  V  V  V  V  E  K  A  I  D  V  V  Q  V  *  D  R  Q  Q  A  Q  L  E  D  H  C  P  G  H  E  S  W  I  V  S  C  Q  S  L  T  W  N  C  D  L  D  S  *  R  S  K  H  I  T  L  I  L  V  R  S  F  V  P  V  F  A  I  W  S  F  T  D  R  N  A  L  I  </first_frame>
            <second_frame>  H  A  E  *  S  L  F  F  L  I  P  F  N  T  L  F  P  K  V  R  Q  Q  T  S  R  V  R  G  D  L  P  C  I  S  N  A  F  Q  G  *  E  Q  *  S  T  S  C  F  C  T  S  S  C  E  S  G  Q  *  S  S  I  S  E  S  S  N  D  F  A  P  I  N  T  C  G  L  V  *  V  P  G  T  T  C  L  A  G  V  *  S  T  S  T  A  K  A  E  A  G  F  P  P  P  *  L  K  H  *  F  P  V  I  W  V  S  W  S  S  I  F  N  R  F  G  *  F  S  A  A  R  P  G  L  A  I  M  K  P  S  N  F  *  *  K  Y  L  N  R  F  K  H  T  R  A  F  G  S  F  G  W  H  V  *  I  F  F  L  G  I  T  A  S  A  Y  Y  *  H  L  P  V  I  A  E  G  F  D  I  G  S  H  F  V  E  L  *  V  G  N  S  T  I  G  V  N  C  F  I  Y  F  F  G  M  F  R  G  I  I  S  L  F  A  M  L  *  W  W  R  R  Q  *  M  *  F  R  F  R  I  G  S  R  H  N  W  R  I  T  V  Q  V  T  N  R  G  S  F  H  V  N  H  *  L  G  I  A  I  *  I  A  E  E  V  S  I  L  H  *  Y  *  F  V  R  L  F  Q  C  L  L  Y  G  H  L  R  I  G  M  L  *  F </second_frame>
            <third_frame>   M  P  N  S  H  Y  F  S  *  F  R  L  I  P  F  F  P  K  S  G  N  K  L  H  E  F  G  V  T  F  P  A  S  A  M  H  F  K  A  E  N  S  S  P  L  H  A  F  V  L  H  P  A  R  V  G  S  E  A  Q  F  Q  N  P  Q  M  I  S  R  Q  S  I  P  A  D  L  S  R  F  Q  V  Q  P  A  W  Q  G  F  N  Q  P  A  Q  P  R  Q  K  Q  D  S  L  P  P  D  L  N  I  S  F  Q  S  S  G  S  P  G  R  P  S  S  T  V  L  V  D  S  Q  Q  P  D  L  A  L  Q  L  *  N  Q  A  I  S  D  K  N  I  *  T  G  S  N  I  Q  E  P  L  D  L  L  A  G  T  S  K  S  S  F  W  A  S  L  L  Q  H  T  T  S  I  Y  L  *  L  L  K  A  L  I  S  D  L  I  S  L  N  F  K  L  A  T  Q  Q  L  E  S  T  A  S  F  I  F  L  G  C  S  E  V  L  F  L  Y  L  L  C  C  S  G  G  E  G  N  R  C  S  S  G  L  G  *  A  A  G  T  T  G  G  S  L  S  R  S  R  I  V  D  R  F  M  S  I  T  D  L  E  L  R  F  R  *  L  K  K  *  A  Y  Y  I  N  T  S  S  F  V  C  S  S  V  C  Y  M  V  I  Y  G  *  E  C  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="921" stop="541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRLIPFFPKSGNKLHEFGVTFPASAMHFKAENSSPLHAFVLHPARVGSEAQFQNPQMISRQSIPADLSRFQVQPAWQGFNQPAQPRQKQDSLPPDLNISFQSSGSPGRPSSTVLVDSQQPDLALQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6381" PGL_stop="5135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6381" e_stop="6333"/>
            <exon e_start="6228" e_stop="6170"/>
            <exon e_start="5645" e_stop="5135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.494" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6381" e_stop="6333" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="6332" i_stop="6229" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6228" e_stop="6170" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.494" acc_prob="0.988">
            <gDNA_intron_boundary i_start="6169" i_stop="5646" i_length="524"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="5645" e_stop="5135" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6381" stop="6333"/>
              <exon start="6228" stop="6170"/>
              <exon start="5645" stop="5135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTCTTTTTTCTCTCTTCAACAAACACCAATTCATAGGATTTCTTAAG : ATAAAATTTTCTAGATCTTGAAGAAAGTTATTTGTTGCAAGTTTCAATTATAAAGAGAG : AAGATGTCATCGTCATCTGAAGGGAGGTACAATTTGTATAGTCAAGGTAGTAGTGGATGGACATCAATGAGGAATGAAGAATTTCAAGAAGAAGAAATTTGGGGAAATTTCATTAACGAAAGACGCGAATTTAGTTCAAATTTCAACAGAAACAAAGAGTCGTCGTCACCAATTTTTAGTCCTAGGAGGCTTCCCACCGCAGCCAAAATGATTCAGAGATCGAGCAAGAGTTCAATTCAGGAACCTAAAATAATTCAACATTCAGCTCCAGTAAACATACCTGATTGGTCAAAAATTTATGGAACAAATTTCAATAAAAACTTGTCACGTCGTGATGATTTTGATTATGATGATGATAATTACGATGGCGGAGGACATAATTTGACAAAAAATAGTTCGAAATTTGATGAAGAGGACGATGATGACGACGACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> D  S  F  F  S  L  Q  Q  T  P  I  H  R  I  S  *   : D  K  I  F  *  I  L  K  K  V  I  C  C  K  F  Q  L  *  R  E  :  K  M  S  S  S  S  E  G  R  Y  N  L  Y  S  Q  G  S  S  G  W  T  S  M  R  N  E  E  F  Q  E  E  E  I  W  G  N  F  I  N  E  R  R  E  F  S  S  N  F  N  R  N  K  E  S  S  S  P  I  F  S  P  R  R  L  P  T  A  A  K  M  I  Q  R  S  S  K  S  S  I  Q  E  P  K  I  I  Q  H  S  A  P  V  N  I  P  D  W  S  K  I  Y  G  T  N  F  N  K  N  L  S  R  R  D  D  F  D  Y  D  D  D  N  Y  D  G  G  G  H  N  L  T  K  N  S  S  K  F  D  E  E  D  D  D  D  D  D  E  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  T  L  F  S  L  F  N  K  H  Q  F  I  G  F  L  K  :  I  K  F  S  R  S  *  R  K  L  F  V  A  S  F  N  Y  K  E  R :   R  C  H  R  H  L  K  G  G  T  I  C  I  V  K  V  V  V  D  G  H  Q  *  G  M  K  N  F  K  K  K  K  F  G  E  I  S  L  T  K  D  A  N  L  V  Q  I  S  T  E  T  K  S  R  R  H  Q  F  L  V  L  G  G  F  P  P  Q  P  K  *  F  R  D  R  A  R  V  Q  F  R  N  L  K  *  F  N  I  Q  L  Q  *  T  Y  L  I  G  Q  K  F  M  E  Q  I  S  I  K  T  C  H  V  V  M  I  L  I  M  M  M  I  I  T  M  A  E  D  I  I  *  Q  K  I  V  R  N  L  M  K  R  T  M  M  T  T  T  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   L  F  F  L  S  S  T  N  T  N  S  *  D  F  L  R :   *  N  F  L  D  L  E  E  S  Y  L  L  Q  V  S  I  I  K  R   : E  D  V  I  V  I  *  R  E  V  Q  F  V  *  S  R  *  *  W  M  D  I  N  E  E  *  R  I  S  R  R  R  N  L  G  K  F  H  *  R  K  T  R  I  *  F  K  F  Q  Q  K  Q  R  V  V  V  T  N  F  *  S  *  E  A  S  H  R  S  Q  N  D  S  E  I  E  Q  E  F  N  S  G  T  *  N  N  S  T  F  S  S  S  K  H  T  *  L  V  K  N  L  W  N  K  F  Q  *  K  L  V  T  S  *  *  F  *  L  *  *  *  *  L  R  W  R  R  T  *  F  D  K  K  *  F  E  I  *  *  R  G  R  *  *  R  R  R  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6175" stop="6170"/>
                    <exon start="5645" stop="5136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKMSSSSEGRYNLYSQGSSGWTSMRNEEFQEEEIWGNFINERREFSSNFNRNKESSSPIFSPRRLPTAAKMIQRSSKSSIQEPKIIQHSAPVNIPDWSKIYGTNFNKNLSRRDDFDYDDDNYDGGGHNLTKNSSKFDEEDDDDDDEFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13215" PGL_stop="12568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13215" e_stop="12731"/>
            <exon e_start="12574" e_stop="12568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.976" e_score="0.998"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="13215" e_stop="12731" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.976">
            <gDNA_intron_boundary i_start="12730" i_stop="12575" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.857">
            <gDNA_exon_boundary e_start="12574" e_stop="12568" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13215" stop="12731"/>
              <exon start="12574" stop="12568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13193" stop="12775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13069" stop="12731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAAAAATTTACCAGTTATCTCACCGACAATGTCATCTCTCTGTTGACAAAAAAGAGAAACAGGTGTCCACCATTAAAAGTATAATAAGAAATTAGTACTAACTTAGATGGATTCTTGAACAAAGTGCTGTATTGTGGGTCTTATTTTCTTCAATTCCACATATTCAACACTTTCTTCTTCTATTTCACTCACCTGGGGAGCTTCTCCCATGTGAAAATAGAAACCCCTTTTGTTAAAAAAGGATTTTTTTTTTGAAATCTTGAAATTGCTACTGTTTTGGGGGTTCTTTGGTTTTTTGGGGTTGTTGAGTTGGGAACTGAAATGGGTGTTGTTTGAATTTGTTGTTAATTGGTTTAAGCAATGAAGAACACAATGAAAAGTAGAGGAGGAGGCGAATCAGCTGGAAAAGGTGTTTTTTCTAGGAAATTGACTGTTCTTCTGTGTATTGGATGCTTTTGTGTTGGGATGCTCTTCACTGACAG : CGGATGT</gDNA_template>
            <first_frame> L  Q  K  F  T  S  Y  L  T  D  N  V  I  S  L  L  T  K  K  R  N  R  C  P  P  L  K  V  *  *  E  I  S  T  N  L  D  G  F  L  N  K  V  L  Y  C  G  S  Y  F  L  Q  F  H  I  F  N  T  F  F  F  Y  F  T  H  L  G  S  F  S  H  V  K  I  E  T  P  F  V  K  K  G  F  F  F  *  N  L  E  I  A  T  V  L  G  V  L  W  F  F  G  V  V  E  L  G  T  E  M  G  V  V  *  I  C  C  *  L  V  *  A  M  K  N  T  M  K  S  R  G  G  G  E  S  A  G  K  G  V  F  S  R  K  L  T  V  L  L  C  I  G  C  F  C  V  G  M  L  F  T  D  S :   G  C </first_frame>
            <second_frame>  Y  K  N  L  P  V  I  S  P  T  M  S  S  L  C  *  Q  K  R  E  T  G  V  H  H  *  K  Y  N  K  K  L  V  L  T  *  M  D  S  *  T  K  C  C  I  V  G  L  I  F  F  N  S  T  Y  S  T  L  S  S  S  I  S  L  T  W  G  A  S  P  M  *  K  *  K  P  L  L  L  K  K  D  F  F  F  E  I  L  K  L  L  L  F  W  G  F  F  G  F  L  G  L  L  S  W  E  L  K  W  V  L  F  E  F  V  V  N  W  F  K  Q  *  R  T  Q  *  K  V  E  E  E  A  N  Q  L  E  K  V  F  F  L  G  N  *  L  F  F  C  V  L  D  A  F  V  L  G  C  S  S  L  T   : A  D   </second_frame>
            <third_frame>   T  K  I  Y  Q  L  S  H  R  Q  C  H  L  S  V  D  K  K  E  K  Q  V  S  T  I  K  S  I  I  R  N  *  Y  *  L  R  W  I  L  E  Q  S  A  V  L  W  V  L  F  S  S  I  P  H  I  Q  H  F  L  L  L  F  H  S  P  G  E  L  L  P  C  E  N  R  N  P  F  C  *  K  R  I  F  F  L  K  S  *  N  C  Y  C  F  G  G  S  L  V  F  W  G  C  *  V  G  N  *  N  G  C  C  L  N  L  L  L  I  G  L  S  N  E  E  H  N  E  K  *  R  R  R  R  I  S  W  K  R  C  F  F  *  E  I  D  C  S  S  V  Y  W  M  L  L  C  W  D  A  L  H  *  Q  :  R  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0175E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18611" PGL_stop="18235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18611" e_stop="18235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="18611" e_stop="18235" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="18235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNATGATGACGACGACGACGACGATGAAGGAGAAATGATGCCTCCACATGAATGGATTGCTAAAAAACTTGAAAGAAGTAAAATATCTTCTTTTTCAGTGTGTGAAGGTGTTGGAAGAACACTAAAAGGGAGAGATTTGAGTAGGGTGAGAAATGCAATATTAAGTAAAACAGGGTTCCTTGAATAGCATTAGGTCAAATGAATCGATAGTGAAAGATTTATATAGTCGATTCTGATTTATTTATGAGATATAGTTATTATTGTTGTTGTTGTATTATAATCGTGTAGATGATGTGGTGATTGGTTGATGATCGTAAGACATCAATAATAGAATTTGATTAGTAATTGAATTAATATGTTTAATTAGAATTAACA</gDNA_template>
            <first_frame> F  Y  D  D  D  D  D  D  D  E  G  E  M  M  P  P  H  E  W  I  A  K  K  L  E  R  S  K  I  S  S  F  S  V  C  E  G  V  G  R  T  L  K  G  R  D  L  S  R  V  R  N  A  I  L  S  K  T  G  F  L  E  *  H  *  V  K  *  I  D  S  E  R  F  I  *  S  I  L  I  Y  L  *  D  I  V  I  I  V  V  V  V  L  *  S  C  R  *  C  G  D  W  L  M  I  V  R  H  Q  *  *  N  L  I  S  N  *  I  N  M  F  N  *  N  *   </first_frame>
            <second_frame>  F  M  M  T  T  T  T  T  M  K  E  K  *  C  L  H  M  N  G  L  L  K  N  L  K  E  V  K  Y  L  L  F  Q  C  V  K  V  L  E  E  H  *  K  G  E  I  *  V  G  *  E  M  Q  Y  *  V  K  Q  G  S  L  N  S  I  R  S  N  E  S  I  V  K  D  L  Y  S  R  F  *  F  I  Y  E  I  *  L  L  L  L  L  L  Y  Y  N  R  V  D  D  V  V  I  G  *  *  S  *  D  I  N  N  R  I  *  L  V  I  E  L  I  C  L  I  R  I  N  </second_frame>
            <third_frame>   L  *  *  R  R  R  R  R  *  R  R  N  D  A  S  T  *  M  D  C  *  K  T  *  K  K  *  N  I  F  F  F  S  V  *  R  C  W  K  N  T  K  R  E  R  F  E  *  G  E  K  C  N  I  K  *  N  R  V  P  *  I  A  L  G  Q  M  N  R  *  *  K  I  Y  I  V  D  S  D  L  F  M  R  Y  S  Y  Y  C  C  C  C  I  I  I  V  *  M  M  W  *  L  V  D  D  R  K  T  S  I  I  E  F  D  *  *  L  N  *  Y  V  *  L  E  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0175E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20561" PGL_stop="19821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20561" e_stop="19821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="20561" e_stop="19821" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20561" stop="19859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20560" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20548" stop="20009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20540" stop="19849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20539" stop="19821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20538" stop="19938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20523" stop="20128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20522" stop="19958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20522" stop="20016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20522" stop="20049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20509" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20462" stop="19924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGCCTTATCCTAGCTCAATTCGTTTTCCTTTCGCACCTCGAATCCATCGCCGTCAAATCACAGCTTCTTCTTCGCCGGCGGCGGCTATGGCGTGTGTGCCTAATTCATCGATGACTCTTCTCTTCGTCGAAATGGGCGTCGGCTACGATCAACACGGTCAAGACGTAACCTCAGCTGCTATGCGAGCCTGTAAAAGTGCAATTTCATCCAATTCAATACCAGCGTTTAGAAGAGGATCTATACCTGGAGTTTCATTCGAGCAGATGAAATTGCAAATCAAATTAGGTGTTCCTCGGCCTCTACATCACACTCTAGATCTGGAGAAAGTGAAATCAGTGTTTCCTTATGGAAGAATCTCGAATGTTGAGGTCGTTGATGGCGGATTGATATGCTCCAGTGGTGTTCAAGTTGAAGAAATGGGAGATAAAAATGACGATTGTTACATCGTCAACGCTGCTGTCTATGTTGGTTACTGATCCATTTTCCAGATTATTCGAATAGTTGAACTGATAATTTCGTTCAAAATTAACGAAAGTTTACATTTTATAGCAATTTTATTCGATTAATGTATGTCTTTGATTTTAGATTATGTTATGGAGTTTGAGTTCGAATTTGAATTCTCATTATTGTTTACCAGTTTGAAGTCATTCGATTATCGAATGAGCTTGTAGTGAGATGGAAAAATCGAAAGATTAATACTCATGATTCGAAAGCATGAATATGAAAACCTATATTTGTG</gDNA_template>
            <first_frame> L  A  L  S  *  L  N  S  F  S  F  R  T  S  N  P  S  P  S  N  H  S  F  F  F  A  G  G  G  Y  G  V  C  A  *  F  I  D  D  S  S  L  R  R  N  G  R  R  L  R  S  T  R  S  R  R  N  L  S  C  Y  A  S  L  *  K  C  N  F  I  Q  F  N  T  S  V  *  K  R  I  Y  T  W  S  F  I  R  A  D  E  I  A  N  Q  I  R  C  S  S  A  S  T  S  H  S  R  S  G  E  S  E  I  S  V  S  L  W  K  N  L  E  C  *  G  R  *  W  R  I  D  M  L  Q  W  C  S  S  *  R  N  G  R  *  K  *  R  L  L  H  R  Q  R  C  C  L  C  W  L  L  I  H  F  P  D  Y  S  N  S  *  T  D  N  F  V  Q  N  *  R  K  F  T  F  Y  S  N  F  I  R  L  M  Y  V  F  D  F  R  L  C  Y  G  V  *  V  R  I  *  I  L  I  I  V  Y  Q  F  E  V  I  R  L  S  N  E  L  V  V  R  W  K  N  R  K  I  N  T  H  D  S  K  A  *  I  *  K  P  I  F  V </first_frame>
            <second_frame>  *  P  Y  P  S  S  I  R  F  P  F  A  P  R  I  H  R  R  Q  I  T  A  S  S  S  P  A  A  A  M  A  C  V  P  N  S  S  M  T  L  L  F  V  E  M  G  V  G  Y  D  Q  H  G  Q  D  V  T  S  A  A  M  R  A  C  K  S  A  I  S  S  N  S  I  P  A  F  R  R  G  S  I  P  G  V  S  F  E  Q  M  K  L  Q  I  K  L  G  V  P  R  P  L  H  H  T  L  D  L  E  K  V  K  S  V  F  P  Y  G  R  I  S  N  V  E  V  V  D  G  G  L  I  C  S  S  G  V  Q  V  E  E  M  G  D  K  N  D  D  C  Y  I  V  N  A  A  V  Y  V  G  Y  *  S  I  F  Q  I  I  R  I  V  E  L  I  I  S  F  K  I  N  E  S  L  H  F  I  A  I  L  F  D  *  C  M  S  L  I  L  D  Y  V  M  E  F  E  F  E  F  E  F  S  L  L  F  T  S  L  K  S  F  D  Y  R  M  S  L  *  *  D  G  K  I  E  R  L  I  L  M  I  R  K  H  E  Y  E  N  L  Y  L   </second_frame>
            <third_frame>   S  L  I  L  A  Q  F  V  F  L  S  H  L  E  S  I  A  V  K  S  Q  L  L  L  R  R  R  R  L  W  R  V  C  L  I  H  R  *  L  F  S  S  S  K  W  A  S  A  T  I  N  T  V  K  T  *  P  Q  L  L  C  E  P  V  K  V  Q  F  H  P  I  Q  Y  Q  R  L  E  E  D  L  Y  L  E  F  H  S  S  R  *  N  C  K  S  N  *  V  F  L  G  L  Y  I  T  L  *  I  W  R  K  *  N  Q  C  F  L  M  E  E  S  R  M  L  R  S  L  M  A  D  *  Y  A  P  V  V  F  K  L  K  K  W  E  I  K  M  T  I  V  T  S  S  T  L  L  S  M  L  V  T  D  P  F  S  R  L  F  E  *  L  N  *  *  F  R  S  K  L  T  K  V  Y  I  L  *  Q  F  Y  S  I  N  V  C  L  *  F  *  I  M  L  W  S  L  S  S  N  L  N  S  H  Y  C  L  P  V  *  S  H  S  I  I  E  *  A  C  S  E  M  E  K  S  K  D  *  Y  S  *  F  E  S  M  N  M  K  T  Y  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20557" stop="20084"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYPSSIRFPFAPRIHRRQITASSSPAAAMACVPNSSMTLLFVEMGVGYDQHGQDVTSAAMRACKSAISSNSIPAFRRGSIPGVSFEQMKLQIKLGVPRPLHHTLDLEKVKSVFPYGRISNVEVVDGGLICSSGVQVEEMGDKNDDCYIVNAAVYVGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27393" PGL_stop="24101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27393" e_stop="27341"/>
            <exon e_start="27246" e_stop="27172"/>
            <exon e_start="25544" e_stop="25489"/>
            <exon e_start="25387" e_stop="25335"/>
            <exon e_start="24662" e_stop="24544"/>
            <exon e_start="24458" e_stop="24101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.702" acc_prob="0.991" e_score="0.974"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="27393" e_stop="27341" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.702" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27340" i_stop="27247" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27246" e_stop="27172" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27171" i_stop="25545" i_length="1627"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25544" e_stop="25489" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25488" i_stop="25388" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25387" e_stop="25335" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25334" i_stop="24663" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24662" e_stop="24544" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="24458" e_stop="24101" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27393" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27378" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27377" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27367" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623579" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27367" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27367" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27365" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27353" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27350" stop="27341"/>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27246" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27203" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463258" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27200" stop="27172"/>
              <exon start="25544" stop="25489"/>
              <exon start="25387" stop="25335"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24646" stop="24544"/>
              <exon start="24458" stop="24203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24591" stop="24544"/>
              <exon start="24458" stop="24196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24443" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAAGAGAAAATTTTGGATGCGTTTTCCACTCTTTTTGTGATTTGTTTGT : ATACCCCAATTTTTTTGTTAGATCATTCTCAGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTG : AGAGGCGACAGGCTGAAGCTGCTCGTATCAGGGAGAAGTACCCTGATAGAATACCG : GTGATTGTTGAGAAGGCTGAAAGAAGTGACATCCCTGACATTGACAAGAAAAA : GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG : CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTCGTGTTCCTTGGTCACAAAAAATAGTCTGATGGTATCCTGTTTCTTCACATTTTCATGTGAAATATTGAATTTCAAAGTGTCATTTTAGGTTATAA</gDNA_template>
            <first_frame> K  Q  R  E  N  F  G  C  V  F  H  S  F  C  D  L  F  V :   Y  P  N  F  F  V  R  S  F  S  D  H  H  G  Q  K  L  L  Q  I  G  T  P  S  * :   E  A  T  G  *  S  C  S  Y  Q  G  E  V  P  *  *  N  T   : G  D  C  *  E  G  *  K  K  *  H  P  *  H  *  Q  E  K  :  V  F  G  S  R  G  S  D  C  W  T  I  C  V  C  C  S  Q  E  D  *  A  Q  R  *  E  G  H  F  Y  L  C  E  E  Y  P  P  P  Y  S :   C  H  D  V  C  H  L  *  G  T  Q  G  *  G  R  L  P  V  H  D  L  Q  W  R  E  Y  L  R  I  L  L  K  F  Q  A  E  R  P  Y  C  V  N  N  A  E  E  N  L  *  I  L  L  A  L  A  Y  S  S  E  L  S  F  Y  Q  D  A  V  L  G  *  H  *  L  V  Y  V  V  T  F  M  K  M  L  A  F  V  F  R  V  P  W  S  Q  K  I  V  *  W  Y  P  V  S  S  H  F  H  V  K  Y  *  I  S  K  C  H  F  R  L  * </first_frame>
            <second_frame>  N  K  E  K  I  L  D  A  F  S  T  L  F  V  I  C  L   : Y  T  P  I  F  L  L  D  H  S  Q  I  T  M  A  K  S  S  F  K  L  E  H  P  L   : E  R  R  Q  A  E  A  A  R  I  R  E  K  Y  P  D  R  I  P  :  V  I  V  E  K  A  E  R  S  D  I  P  D  I  D  K  K  K :   Y  L  V  P  A  D  L  T  V  G  Q  F  V  Y  V  V  R  K  R  I  K  L  S  A  E  K  A  I  F  I  F  V  K  N  I  L  P  P  T   : A  A  M  M  S  A  I  Y  E  E  H  K  D  E  D  G  F  L  Y  M  T  Y  S  G  E  N  T  F  G  S  F  *  S  F  K  R  R  D  R  T  V  *  I  T  L  K  K  T  C  K  Y  Y  L  R  *  P  T  L  L  N  Y  L  S  T  K  M  L  S  W  V  D  I  D  W  F  M  *  L  P  L  *  R  C  L  R  S  F  F  V  F  L  G  H  K  K  *  S  D  G  I  L  F  L  H  I  F  M  *  N  I  E  F  Q  S  V  I  L  G  Y   </second_frame>
            <third_frame>   T  K  R  K  F  W  M  R  F  P  L  F  L  *  F  V  C  :  I  P  Q  F  F  C  *  I  I  L  R  S  P  W  P  K  A  P  S  N  W  N  T  L  L  :  R  G  D  R  L  K  L  L  V  S  G  R  S  T  L  I  E  Y  R :   *  L  L  R  R  L  K  E  V  T  S  L  T  L  T  R  K   : S  I  W  F  P  R  I  *  L  L  D  N  L  C  M  L  F  A  R  G  L  S  S  A  L  R  R  P  F  L  S  L  *  R  I  S  S  P  L  Q  :  L  P  *  C  L  P  F  M  R  N  T  R  M  R  T  A  S  C  T  *  P  T  V  A  R  I  P  S  D  P  S  E  V  S  S  G  E  T  V  L  C  K  *  R  *  R  K  L  V  N  T  T  C  V  S  L  L  F  *  I  I  F  L  P  R  C  C  L  G  L  T  L  T  G  L  C  S  Y  L  Y  E  D  A  C  V  R  F  S  C  S  L  V  T  K  N  S  L  M  V  S  C  F  F  T  F  S  C  E  I  L  N  F  K  V  S  F  *  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27392" stop="27341"/>
                    <exon start="27246" stop="27172"/>
                    <exon start="25544" stop="25489"/>
                    <exon start="25387" stop="25335"/>
                    <exon start="24662" stop="24544"/>
                    <exon start="24458" stop="24364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKEKILDAFSTLFVICLYTPIFLLDHSQITMAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFGSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24761" e_stop="24755"/>
            <exon e_start="24662" e_stop="24544"/>
            <exon e_start="24458" e_stop="24196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.091" acc_prob="0.998" e_score="0.857"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.857">
            <gDNA_exon_boundary e_start="24761" e_stop="24755" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.091" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24754" i_stop="24663" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="24662" e_stop="24544" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24543" i_stop="24459" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24458" e_stop="24196" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24761" stop="24755"/>
              <exon start="24662" stop="24544"/>
              <exon start="24458" stop="24221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24646" stop="24544"/>
              <exon start="24458" stop="24203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24591" stop="24544"/>
              <exon start="24458" stop="24196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24443" stop="24215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAAA : GTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGCAAGAGGATTAAGCTCAGCGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAG : CTGCCATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGACGGCTTCCTGTACATGACCTACAGTGGCGAGAATACCTTCGGATCCTTCTGAAGTTTCAAGCGGAGAGACCGTACTGTGTAAATAACGCTGAAGAAAACTTGTAAATACTACTTGCGTTAGCCTACTCTTCTGAATTATCTTTCTACCAAGATGCTGTCTTGGGTTGACATTGACTGGTTTATGTAGTTACCTTTATGAAGATGCTTGCGTTCGTTTTTC</gDNA_template>
            <first_frame> E  Q   : S  I  W  F  P  R  I  *  L  L  D  N  L  C  M  L  F  A  R  G  L  S  S  A  L  R  R  P  F  L  S  L  *  R  I  S  S  P  L  Q  :  L  P  *  C  L  P  F  M  R  N  T  R  M  R  T  A  S  C  T  *  P  T  V  A  R  I  P  S  D  P  S  E  V  S  S  G  E  T  V  L  C  K  *  R  *  R  K  L  V  N  T  T  C  V  S  L  L  F  *  I  I  F  L  P  R  C  C  L  G  L  T  L  T  G  L  C  S  Y  L  Y  E  D  A  C  V  R  F   </first_frame>
            <second_frame>  N  K  :  V  F  G  S  R  G  S  D  C  W  T  I  C  V  C  C  S  Q  E  D  *  A  Q  R  *  E  G  H  F  Y  L  C  E  E  Y  P  P  P  Y  S :   C  H  D  V  C  H  L  *  G  T  Q  G  *  G  R  L  P  V  H  D  L  Q  W  R  E  Y  L  R  I  L  L  K  F  Q  A  E  R  P  Y  C  V  N  N  A  E  E  N  L  *  I  L  L  A  L  A  Y  S  S  E  L  S  F  Y  Q  D  A  V  L  G  *  H  *  L  V  Y  V  V  T  F  M  K  M  L  A  F  V  F  </second_frame>
            <third_frame>   T  K :   Y  L  V  P  A  D  L  T  V  G  Q  F  V  Y  V  V  R  K  R  I  K  L  S  A  E  K  A  I  F  I  F  V  K  N  I  L  P  P  T   : A  A  M  M  S  A  I  Y  E  E  H  K  D  E  D  G  F  L  Y  M  T  Y  S  G  E  N  T  F  G  S  F  *  S  F  K  R  R  D  R  T  V  *  I  T  L  K  K  T  C  K  Y  Y  L  R  *  P  T  L  L  N  Y  L  S  T  K  M  L  S  W  V  D  I  D  W  F  M  *  L  P  L  *  R  C  L  R  S  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24759" stop="24755"/>
                    <exon start="24662" stop="24544"/>
                    <exon start="24458" stop="24364"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFGSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32717" PGL_stop="29057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32717" e_stop="32615"/>
            <exon e_start="32447" e_stop="32383"/>
            <exon e_start="32280" e_stop="32069"/>
            <exon e_start="31965" e_stop="31902"/>
            <exon e_start="31311" e_stop="31239"/>
            <exon e_start="31141" e_stop="31021"/>
            <exon e_start="30906" e_stop="30819"/>
            <exon e_start="30743" e_stop="30618"/>
            <exon e_start="30533" e_stop="30424"/>
            <exon e_start="29550" e_stop="29057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.716" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.977" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="32717" e_stop="32615" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.716" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32614" i_stop="32448" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32447" e_stop="32383" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32280" e_stop="32069" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31965" e_stop="31902" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31311" e_stop="31239" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31141" e_stop="31021" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.328" acc_prob="0.948">
            <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30906" e_stop="30819" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30743" e_stop="30618" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="30617" i_stop="30534" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30533" e_stop="30424" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30423" i_stop="29551" i_length="873"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29550" e_stop="29057" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32717" stop="32615"/>
              <exon start="32447" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32441" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32440" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32396" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32247" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32179" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32156" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32135" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31139" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31139" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31139" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30618"/>
              <exon start="30533" stop="30454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30682" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30673" stop="30618"/>
              <exon start="30533" stop="30424"/>
              <exon start="29550" stop="29071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30477" stop="30424"/>
              <exon start="29550" stop="29063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30466" stop="30424"/>
              <exon start="29550" stop="29057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29483" stop="29072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAGGATGTGGACAGTGCCAGAAGCTAAAGGCATAACAAGGACAACACAGATTGATGATCAAAAGCTAGGGGTAGTTTCTGAGGACTGTGATCCTACCAAT : AAGGATGTGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACA : AACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG : GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG : TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG : GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG : GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA : GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCA : GCATGTTCTACACAAGTATGTTAATGAGGATGTCTCATTGGGTTCATGGCTCATTGGATTGGATGTGGAACATATAGATGATAGAAGATTGTGTTGTGGAACTCCGCCAG : ATTGTGAGTGGAAAGCTCAAGCAGGCAACATTTGTGTTGCTTCCTTTGATTGGAGCTGCAGCGGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGTGGAATGCATCCTTTTGACAAAATCCATCATTTCTCCAATCTCTGGAGGCTCCAAAAATGGTTACACGAACACTCGAAAAAACAAGATGTATCCGAGAATTCTCAGAAACATTATATAAACTGTATCAATGGGAGAGGGAAGAGAGGTTGCCACTATATCTGCTCCAAATATTATTAGCTAAGGAGAGGGATAGTATTGTAGCAACCAATATGTGAAGCAAAAAGTGTAAAGAGTCATTCTTTTTAGATGCTTAGATTATAATAATTTGTTAGTCTTTGTGAGAGGAAACTATCAAGTGTAATACTTTTGTTGCTTTTGTATGAAGTTTTGAAATGAAATTTACCTTTTATTACTTTGTTTCA</gDNA_template>
            <first_frame> L  *  D  V  D  S  A  R  S  *  R  H  N  K  D  N  T  D  *  *  S  K  A  R  G  S  F  *  G  L  *  S  Y  Q   : *  G  C  E  K  *  I  Q  G  *  F  R  *  S  Y  K  N  T  S  C  Y  T  :  N  P  G  *  N  N  F  K  L  R  D  G  T  S  C  S  K  G  F  A  R  F  Y  T  E  W  V  S  N  N  R  R  H  K  D  P  R  I  G  E  E  E  K  I  S  N  G  H  R  D  K  H  C  L  Q  Q  P  K  E  K  R  L  S  S  C  Y  L  D  A  T  R :   *  *  A  K  E  A  R  G  R  K  R  H  C  N  S  F  C  N  R  S  Q  :  C  N  I  R  W  H  S  *  *  S  N  *  S  G  R  Q  E  A  W  *  F  L  E  A   : G  T  C  *  G  I  S  G  I  I  C  *  D  K  D  I  F  Y  Y  C  C  C  S  M  G  C  *  F  L  Y  *  S  *  *  *  C  T  C  K  H  R :   C  T  G  S  N  S  S  *  A  S  F  E  T  S  G  I  Y  W  L  H  E  I  W  S  S  P  C  S  K  :  G  S  E  I  S  *  A  *  A  L  E  I  W  *  G  W  K  Q  I  F  S  T  C  N  R  A  V  I  C  H  F  K  R  F  S  Y  L  Y  I  F  K  S  :  A  C  S  T  Q  V  C  *  *  G  C  L  I  G  F  M  A  H  W  I  G  C  G  T  Y  R  *  *  K  I  V  L  W  N  S  A  R :   L  *  V  E  S  S  S  R  Q  H  L  C  C  F  L  *  L  E  L  Q  R  D  M  Q  V  R  R  *  D  Y  G  G  S  S  T  L  W  G  R  R  E  C  F  V  E  C  I  L  L  T  K  S  I  I  S  P  I  S  G  G  S  K  N  G  Y  T  N  T  R  K  N  K  M  Y  P  R  I  L  R  N  I  I  *  T  V  S  M  G  E  G  R  E  V  A  T  I  S  A  P  N  I  I  S  *  G  E  G  *  Y  C  S  N  Q  Y  V  K  Q  K  V  *  R  V  I  L  F  R  C  L  D  Y  N  N  L  L  V  F  V  R  G  N  Y  Q  V  *  Y  F  C  C  F  C  M  K  F  *  N  E  I  Y  L  L  L  L  C  F  </first_frame>
            <second_frame>  Y  R  M  W  T  V  P  E  A  K  G  I  T  R  T  T  Q  I  D  D  Q  K  L  G  V  V  S  E  D  C  D  P  T  N  :  K  D  V  K  S  E  S  K  D  N  F  G  E  V  T  K  T  H  H  A  I  Q :   T  L  D  K  T  I  S  N  L  E  M  E  L  A  A  A  R  A  L  Q  D  S  I  L  S  G  S  P  I  T  E  D  I  K  I  P  E  L  A  K  K  R  K  Y  R  M  V  I  G  I  N  T  A  F  N  S  R  K  R  R  D  S  V  R  A  T  W  M  P  Q   : G  D  K  R  K  K  L  E  E  E  K  G  I  V  I  R  F  V  I  G  H  S :   A  T  S  G  G  I  L  D  R  A  I  E  A  E  D  K  K  H  G  D  F  L  R  L  :  E  H  V  E  G  Y  L  E  L  S  A  K  T  K  T  Y  F  T  T  A  V  A  L  W  D  A  D  F  Y  I  K  V  D  D  D  V  H  V  N  I   : G  A  L  G  A  T  L  A  R  H  H  S  K  P  R  V  Y  I  G  C  M  K  S  G  P  V  L  A  Q  K :   G  V  R  Y  H  E  P  E  H  W  K  F  G  E  D  G  N  K  Y  F  R  H  A  T  G  Q  L  Y  A  I  S  K  D  L  A  T  Y  I  S  L  N  Q :   H  V  L  H  K  Y  V  N  E  D  V  S  L  G  S  W  L  I  G  L  D  V  E  H  I  D  D  R  R  L  C  C  G  T  P  P   : D  C  E  W  K  A  Q  A  G  N  I  C  V  A  S  F  D  W  S  C  S  G  I  C  R  S  V  D  R  I  M  E  V  H  R  R  C  G  E  G  E  N  A  L  W  N  A  S  F  *  Q  N  P  S  F  L  Q  S  L  E  A  P  K  M  V  T  R  T  L  E  K  T  R  C  I  R  E  F  S  E  T  L  Y  K  L  Y  Q  W  E  R  E  E  R  L  P  L  Y  L  L  Q  I  L  L  A  K  E  R  D  S  I  V  A  T  N  M  *  S  K  K  C  K  E  S  F  F  L  D  A  *  I  I  I  I  C  *  S  L  *  E  E  T  I  K  C  N  T  F  V  A  F  V  *  S  F  E  M  K  F  T  F  Y  Y  F  V  S </second_frame>
            <third_frame>   I  G  C  G  Q  C  Q  K  L  K  A  *  Q  G  Q  H  R  L  M  I  K  S  *  G  *  F  L  R  T  V  I  L  P  I :   R  M  *  K  V  N  P  R  I  I  S  V  K  L  Q  K  H  I  M  L  Y   : K  P  W  I  K  Q  F  Q  T  *  R  W  N  *  L  Q  Q  G  L  C  K  I  L  Y  *  V  G  L  Q  *  Q  K  T  *  R  S  P  N  W  R  R  R  E  N  I  E  W  S  *  G  *  T  L  P  S  T  A  E  R  E  E  T  Q  F  V  L  L  G  C  H  K  :  V  I  S  E  R  S  *  R  K  K  K  A  L  *  F  V  L  *  *  V  T   : V  Q  H  Q  V  A  F  L  I  E  Q  L  K  R  K  T  R  S  M  V  I  S  *  G  W :   N  M  L  R  D  I  W  N  Y  L  L  R  Q  R  H  I  L  L  L  L  L  L  Y  G  M  L  I  S  I  L  K  L  M  M  M  Y  M  *  T  *  :  V  H  W  E  Q  L  *  L  G  I  I  R  N  L  G  Y  I  L  V  A  *  N  L  V  Q  S  L  L  K   : R  E  *  D  I  M  S  L  S  I  G  N  L  V  R  M  E  T  N  I  F  D  M  Q  Q  G  S  Y  M  P  F  Q  K  I  *  L  L  I  Y  L  *  I   : S  M  F  Y  T  S  M  L  M  R  M  S  H  W  V  H  G  S  L  D  W  M  W  N  I  *  M  I  E  D  C  V  V  E  L  R  Q  :  I  V  S  G  K  L  K  Q  A  T  F  V  L  L  P  L  I  G  A  A  A  G  Y  A  G  P  *  I  G  L  W  R  F  I  D  V  V  G  K  A  R  M  L  C  G  M  H  P  F  D  K  I  H  H  F  S  N  L  W  R  L  Q  K  W  L  H  E  H  S  K  K  Q  D  V  S  E  N  S  Q  K  H  Y  I  N  C  I  N  G  R  G  K  R  G  C  H  Y  I  C  S  K  Y  Y  *  L  R  R  G  I  V  L  *  Q  P  I  C  E  A  K  S  V  K  S  H  S  F  *  M  L  R  L  *  *  F  V  S  L  C  E  R  K  L  S  S  V  I  L  L  L  L  L  Y  E  V  L  K  *  N  L  P  F  I  T  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32716" stop="32615"/>
                    <exon start="32447" stop="32383"/>
                    <exon start="32280" stop="32069"/>
                    <exon start="31965" stop="31902"/>
                    <exon start="31311" stop="31239"/>
                    <exon start="31141" stop="31021"/>
                    <exon start="30906" stop="30819"/>
                    <exon start="30743" stop="30618"/>
                    <exon start="30533" stop="30424"/>
                    <exon start="29550" stop="29402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRMWTVPEAKGITRTTQIDDQKLGVVSEDCDPTNKDVKSESKDNFGEVTKTHHAIQTLDKTISNLEMELAAARALQDSILSGSPITEDIKIPELAKKRKYRMVIGINTAFNSRKRRDSVRATWMPQGDKRKKLEEEKGIVIRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKTYFTTAVALWDADFYIKVDDDVHVNIGALGATLARHHSKPRVYIGCMKSGPVLAQKGVRYHEPEHWKFGEDGNKYFRHATGQLYAISKDLATYISLNQHVLHKYVNEDVSLGSWLIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSVDRIMEVHRRCGEGENALWNASF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29401" stop="29204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNPSFLQSLEAPKMVTRTLEKTRCIREFSETLYKLYQWEREERLPLYLLQILLAKERDSIVATNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32717" e_stop="32615"/>
            <exon e_start="32447" e_stop="32383"/>
            <exon e_start="32280" e_stop="32069"/>
            <exon e_start="31965" e_stop="31902"/>
            <exon e_start="31311" e_stop="31239"/>
            <exon e_start="31141" e_stop="31021"/>
            <exon e_start="30906" e_stop="30819"/>
            <exon e_start="30743" e_stop="30610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.716" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.977" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="32717" e_stop="32615" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.716" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32614" i_stop="32448" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32447" e_stop="32383" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32382" i_stop="32281" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32280" e_stop="32069" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32068" i_stop="31966" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31965" e_stop="31902" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31901" i_stop="31312" i_length="590"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31311" e_stop="31239" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.977">
            <gDNA_intron_boundary i_start="31238" i_stop="31142" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31141" e_stop="31021" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.328" acc_prob="0.948">
            <gDNA_intron_boundary i_start="31020" i_stop="30907" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30906" e_stop="30819" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="30818" i_stop="30744" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30743" e_stop="30610" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32717" stop="32615"/>
              <exon start="32447" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32440" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32396" stop="32383"/>
              <exon start="32280" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32247" stop="32069"/>
              <exon start="31965" stop="31902"/>
              <exon start="31311" stop="31239"/>
              <exon start="31141" stop="31034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31292" stop="31239"/>
              <exon start="31141" stop="31021"/>
              <exon start="30906" stop="30819"/>
              <exon start="30743" stop="30610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAGGATGTGGACAGTGCCAGAAGCTAAAGGCATAACAAGGACAACACAGATTGATGATCAAAAGCTAGGGGTAGTTTCTGAGGACTGTGATCCTACCAAT : AAGGATGTGAAAAGTGAATCCAAGGATAATTTCGGTGAAGTTACAAAAACACATCATGCTATACA : AACCCTGGATAAAACAATTTCAAACTTAGAGATGGAACTAGCTGCAGCAAGGGCTTTGCAAGATTCTATACTGAGTGGGTCTCCAATAACAGAAGACATAAAGATCCCCGAATTGGCGAAGAAGAGAAAATATCGAATGGTCATAGGGATAAACACTGCCTTCAACAGCCGAAAGAGAAGAGACTCAGTTCGTGCTACTTGGATGCCACAAG : GTGATAAGCGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTAATTCGTTTTGTAATAGGTCACAG : TGCAACATCAGGTGGCATTCTTGATAGAGCAATTGAAGCGGAAGACAAGAAGCATGGTGATTTCTTGAGGCTG : GAACATGTTGAGGGATATCTGGAATTATCTGCTAAGACAAAGACATATTTTACTACTGCTGTTGCTCTATGGGATGCTGATTTCTATATTAAAGTTGATGATGATGTACATGTAAACATAG : GTGCACTGGGAGCAACTCTAGCTAGGCATCATTCGAAACCTCGGGTATATATTGGTTGCATGAAATCTGGTCCAGTCCTTGCTCAAAA : GGGAGTGAGATATCATGAGCCTGAGCATTGGAAATTTGGTGAGGATGGAAACAAATATTTTCGACATGCAACAGGGCAGTTATATGCCATTTCAAAAGATTTAGCTACTTATATATCTTTAAATCAGTAAGTTT</gDNA_template>
            <first_frame> L  *  D  V  D  S  A  R  S  *  R  H  N  K  D  N  T  D  *  *  S  K  A  R  G  S  F  *  G  L  *  S  Y  Q   : *  G  C  E  K  *  I  Q  G  *  F  R  *  S  Y  K  N  T  S  C  Y  T  :  N  P  G  *  N  N  F  K  L  R  D  G  T  S  C  S  K  G  F  A  R  F  Y  T  E  W  V  S  N  N  R  R  H  K  D  P  R  I  G  E  E  E  K  I  S  N  G  H  R  D  K  H  C  L  Q  Q  P  K  E  K  R  L  S  S  C  Y  L  D  A  T  R :   *  *  A  K  E  A  R  G  R  K  R  H  C  N  S  F  C  N  R  S  Q  :  C  N  I  R  W  H  S  *  *  S  N  *  S  G  R  Q  E  A  W  *  F  L  E  A   : G  T  C  *  G  I  S  G  I  I  C  *  D  K  D  I  F  Y  Y  C  C  C  S  M  G  C  *  F  L  Y  *  S  *  *  *  C  T  C  K  H  R :   C  T  G  S  N  S  S  *  A  S  F  E  T  S  G  I  Y  W  L  H  E  I  W  S  S  P  C  S  K  :  G  S  E  I  S  *  A  *  A  L  E  I  W  *  G  W  K  Q  I  F  S  T  C  N  R  A  V  I  C  H  F  K  R  F  S  Y  L  Y  I  F  K  S  V  S   </first_frame>
            <second_frame>  Y  R  M  W  T  V  P  E  A  K  G  I  T  R  T  T  Q  I  D  D  Q  K  L  G  V  V  S  E  D  C  D  P  T  N  :  K  D  V  K  S  E  S  K  D  N  F  G  E  V  T  K  T  H  H  A  I  Q :   T  L  D  K  T  I  S  N  L  E  M  E  L  A  A  A  R  A  L  Q  D  S  I  L  S  G  S  P  I  T  E  D  I  K  I  P  E  L  A  K  K  R  K  Y  R  M  V  I  G  I  N  T  A  F  N  S  R  K  R  R  D  S  V  R  A  T  W  M  P  Q   : G  D  K  R  K  K  L  E  E  E  K  G  I  V  I  R  F  V  I  G  H  S :   A  T  S  G  G  I  L  D  R  A  I  E  A  E  D  K  K  H  G  D  F  L  R  L  :  E  H  V  E  G  Y  L  E  L  S  A  K  T  K  T  Y  F  T  T  A  V  A  L  W  D  A  D  F  Y  I  K  V  D  D  D  V  H  V  N  I   : G  A  L  G  A  T  L  A  R  H  H  S  K  P  R  V  Y  I  G  C  M  K  S  G  P  V  L  A  Q  K :   G  V  R  Y  H  E  P  E  H  W  K  F  G  E  D  G  N  K  Y  F  R  H  A  T  G  Q  L  Y  A  I  S  K  D  L  A  T  Y  I  S  L  N  Q  *  V  </second_frame>
            <third_frame>   I  G  C  G  Q  C  Q  K  L  K  A  *  Q  G  Q  H  R  L  M  I  K  S  *  G  *  F  L  R  T  V  I  L  P  I :   R  M  *  K  V  N  P  R  I  I  S  V  K  L  Q  K  H  I  M  L  Y   : K  P  W  I  K  Q  F  Q  T  *  R  W  N  *  L  Q  Q  G  L  C  K  I  L  Y  *  V  G  L  Q  *  Q  K  T  *  R  S  P  N  W  R  R  R  E  N  I  E  W  S  *  G  *  T  L  P  S  T  A  E  R  E  E  T  Q  F  V  L  L  G  C  H  K  :  V  I  S  E  R  S  *  R  K  K  K  A  L  *  F  V  L  *  *  V  T   : V  Q  H  Q  V  A  F  L  I  E  Q  L  K  R  K  T  R  S  M  V  I  S  *  G  W :   N  M  L  R  D  I  W  N  Y  L  L  R  Q  R  H  I  L  L  L  L  L  L  Y  G  M  L  I  S  I  L  K  L  M  M  M  Y  M  *  T  *  :  V  H  W  E  Q  L  *  L  G  I  I  R  N  L  G  Y  I  L  V  A  *  N  L  V  Q  S  L  L  K   : R  E  *  D  I  M  S  L  S  I  G  N  L  V  R  M  E  T  N  I  F  D  M  Q  Q  G  S  Y  M  P  F  Q  K  I  *  L  L  I  Y  L  *  I  S  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32716" stop="32615"/>
                    <exon start="32447" stop="32383"/>
                    <exon start="32280" stop="32069"/>
                    <exon start="31965" stop="31902"/>
                    <exon start="31311" stop="31239"/>
                    <exon start="31141" stop="31021"/>
                    <exon start="30906" stop="30819"/>
                    <exon start="30743" stop="30614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRMWTVPEAKGITRTTQIDDQKLGVVSEDCDPTNKDVKSESKDNFGEVTKTHHAIQTLDKTISNLEMELAAARALQDSILSGSPITEDIKIPELAKKRKYRMVIGINTAFNSRKRRDSVRATWMPQGDKRKKLEEEKGIVIRFVIGHSATSGGILDRAIEAEDKKHGDFLRLEHVEGYLELSAKTKTYFTTAVALWDADFYIKVDDDVHVNIGALGATLARHHSKPRVYIGCMKSGPVLAQKGVRYHEPEHWKFGEDGNKYFRHATGQLYAISKDLATYISLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="36816" PGL_stop="37389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36816" e_stop="37389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36816" e_stop="37389" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36816" stop="37389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36838" stop="37250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGAGCCATCGACGCGTTGATGTGATATGTTTACCCCTAAATTCTGCTCACTTGTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGAGGAACTTTACCTGCATCAGATCCCGTGTTTCTAGCTCATCCAAGATGAGCGTGTTTGGGTGAATTGTGACCTCGTACAATCGTGTCACCTCAATGATCTTCAGAAGAAGTCTTATACCATGTTTTACACCTAGTTGCTAACTTCCAAATGCTGCCACAGACACTTCTTAAAGCTATCTTCTGTGTTTCCATTATGAGGTAGAATTTGCAAGCTGGAGCAAAGAACCAACACTTCATATGGATCCAAATGCATAAGAGCCTCAGGCGCTCTATCATAGTCCTAGCAAATCAAGAATATTGATTATGAGAAATTTGTAATAATTTGTTAGTTACTTTTAGTACGTATATATATATGAGAGTTTAATTCACAACGACAATAACAATATAACCAATGGAATCCCACAAGTGGGGTTTTGGGAAGGTAGAATGTACGCAAAGCTTACCCCTAACT</gDNA_template>
            <first_frame> I  E  P  S  T  R  *  C  D  M  F  T  P  K  F  C  S  L  V  R  I  K  T  P  P  R  T  P  Q  R  E  G  S  Q  L  Y  I  S  T  I  R  R  N  F  T  C  I  R  S  R  V  S  S  S  S  K  M  S  V  F  G  *  I  V  T  S  Y  N  R  V  T  S  M  I  F  R  R  S  L  I  P  C  F  T  P  S  C  *  L  P  N  A  A  T  D  T  S  *  S  Y  L  L  C  F  H  Y  E  V  E  F  A  S  W  S  K  E  P  T  L  H  M  D  P  N  A  *  E  P  Q  A  L  Y  H  S  P  S  K  S  R  I  L  I  M  R  N  L  *  *  F  V  S  Y  F  *  Y  V  Y  I  Y  E  S  L  I  H  N  D  N  N  N  I  T  N  G  I  P  Q  V  G  F  W  E  G  R  M  Y  A  K  L  T  P  N  </first_frame>
            <second_frame>  S  S  H  R  R  V  D  V  I  C  L  P  L  N  S  A  H  L  *  E  S  R  P  H  P  A  P  H  K  G  K  G  V  N  C  T  S  Q  R  L  G  G  T  L  P  A  S  D  P  V  F  L  A  H  P  R  *  A  C  L  G  E  L  *  P  R  T  I  V  S  P  Q  *  S  S  E  E  V  L  Y  H  V  L  H  L  V  A  N  F  Q  M  L  P  Q  T  L  L  K  A  I  F  C  V  S  I  M  R  *  N  L  Q  A  G  A  K  N  Q  H  F  I  W  I  Q  M  H  K  S  L  R  R  S  I  I  V  L  A  N  Q  E  Y  *  L  *  E  I  C  N  N  L  L  V  T  F  S  T  Y  I  Y  M  R  V  *  F  T  T  T  I  T  I  *  P  M  E  S  H  K  W  G  F  G  K  V  E  C  T  Q  S  L  P  L  T </second_frame>
            <third_frame>   R  A  I  D  A  L  M  *  Y  V  Y  P  *  I  L  L  T  C  K  N  Q  D  P  T  P  H  P  T  K  G  R  E  S  T  V  H  L  N  D  *  E  E  L  Y  L  H  Q  I  P  C  F  *  L  I  Q  D  E  R  V  W  V  N  C  D  L  V  Q  S  C  H  L  N  D  L  Q  K  K  S  Y  T  M  F  Y  T  *  L  L  T  S  K  C  C  H  R  H  F  L  K  L  S  S  V  F  P  L  *  G  R  I  C  K  L  E  Q  R  T  N  T  S  Y  G  S  K  C  I  R  A  S  G  A  L  S  *  S  *  Q  I  K  N  I  D  Y  E  K  F  V  I  I  C  *  L  L  L  V  R  I  Y  I  *  E  F  N  S  Q  R  Q  *  Q  Y  N  Q  W  N  P  T  S  G  V  L  G  R  *  N  V  R  K  A  Y  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0175E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="37513" PGL_stop="37921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37513" e_stop="37921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="37513" e_stop="37921" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37513" stop="37921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTTTTTGGAGGACATAAATTAAGAAGCCATCAAGTTGAGAGATAGTCAATAGCATCTTTACACCAAGATAAAGATAAATTGCAGGACGAGAAAGCATCAAATAAGGTTAGCAAAACCTAGAAAGAAGACGATGAATGGTTATTGAAGGACAGGGAGGAGTGAGGAGTTTCCGTGCCTTGCATTTTAGGGCTACCTTGGCCAGATGAGCCTACTAATAAACAACGGTGACATCTACCACGTGAGCAATTCTCAGAAGGATTGGGCCATTTCTTTGCACAGATTGCTAAAAGCTGTAGATGTAAGTAACAGAGAGTGAGGTAAATGTAGTTGTCTTAGCATCAGAATTATAATTTTCTTATTCTGTAAAAGTTAAAGTAGAATATGTTGGCTATATTAACTCTTCCA</gDNA_template>
            <first_frame> Y  F  F  W  R  T  *  I  K  K  P  S  S  *  E  I  V  N  S  I  F  T  P  R  *  R  *  I  A  G  R  E  S  I  K  *  G  *  Q  N  L  E  R  R  R  *  M  V  I  E  G  Q  G  G  V  R  S  F  R  A  L  H  F  R  A  T  L  A  R  *  A  Y  *  *  T  T  V  T  S  T  T  *  A  I  L  R  R  I  G  P  F  L  C  T  D  C  *  K  L  *  M  *  V  T  E  S  E  V  N  V  V  V  L  A  S  E  L  *  F  S  Y  S  V  K  V  K  V  E  Y  V  G  Y  I  N  S  S  </first_frame>
            <second_frame>  I  F  F  G  G  H  K  L  R  S  H  Q  V  E  R  *  S  I  A  S  L  H  Q  D  K  D  K  L  Q  D  E  K  A  S  N  K  V  S  K  T  *  K  E  D  D  E  W  L  L  K  D  R  E  E  *  G  V  S  V  P  C  I  L  G  L  P  W  P  D  E  P  T  N  K  Q  R  *  H  L  P  R  E  Q  F  S  E  G  L  G  H  F  F  A  Q  I  A  K  S  C  R  C  K  *  Q  R  V  R  *  M  *  L  S  *  H  Q  N  Y  N  F  L  I  L  *  K  L  K  *  N  M  L  A  I  L  T  L  P </second_frame>
            <third_frame>   F  F  L  E  D  I  N  *  E  A  I  K  L  R  D  S  Q  *  H  L  Y  T  K  I  K  I  N  C  R  T  R  K  H  Q  I  R  L  A  K  P  R  K  K  T  M  N  G  Y  *  R  T  G  R  S  E  E  F  P  C  L  A  F  *  G  Y  L  G  Q  M  S  L  L  I  N  N  G  D  I  Y  H  V  S  N  S  Q  K  D  W  A  I  S  L  H  R  L  L  K  A  V  D  V  S  N  R  E  *  G  K  C  S  C  L  S  I  R  I  I  I  F  L  F  C  K  S  *  S  R  I  C  W  L  Y  *  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0175E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="40726" PGL_stop="38626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40726" e_stop="40598"/>
            <exon e_start="40418" e_stop="40295"/>
            <exon e_start="39718" e_stop="39479"/>
            <exon e_start="39077" e_stop="38928"/>
            <exon e_start="38792" e_stop="38626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="0.969"/>
          <exon-intron don_prob="0.914" acc_prob="0.996" e_score="0.984"/>
          <exon-intron don_prob="0.968" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.835" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="40726" e_stop="40598" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="40597" i_stop="40419" i_length="179"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="40418" e_stop="40295" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40294" i_stop="39719" i_length="576"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39718" e_stop="39479" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.967">
            <gDNA_intron_boundary i_start="39478" i_stop="39078" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39077" e_stop="38928" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.835">
            <gDNA_intron_boundary i_start="38927" i_stop="38793" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38792" e_stop="38626" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40726" stop="40598"/>
              <exon start="40418" stop="40295"/>
              <exon start="39718" stop="39479"/>
              <exon start="39077" stop="39018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39665" stop="39479"/>
              <exon start="39077" stop="38928"/>
              <exon start="38792" stop="38626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGCTCCGTACACTTTCCACACTGCAATTCTCTCTCATCCCTCTTCTTTCACTAGCTTCCACTCTTTATGGCTTTGTTCTTCCTCTCCGCCATCGCCTTTACTGTCTTGGCCTGCTTCACAAAGACAG : GTTGCCGGTGCCAGTGATTAGCGTTGGAAATTTAACTTGGGGAGGTAATGGGAAGACACCAATGGTTGAGTTTCTTGCAGTTTGGTTGGCTGCTGCTGGAAGTTCACCTCTTATACTAACAAGG : GGTTATGGTGGTGCAGATGAAGCAAAAATGCTCCAAAGGCATCTGTGTAGAACACCTGTGAAGATAGGCATAGGTGCAAACAGGGCCAATACAGCTGCCTCTTTTCTGAAAAGATATGGCCACATCAGCCCTTGTAAGCACGGTGACAAGAATTTGGAGAAACGTATCTCTGATAACAAACATGGAAATTGTTCTTATTCTGACCAAATCGGGATAGCAATCCTAGATGATGGAATGCAG : CATATCGGTTTGTGGCGTGACATCGAGATTGTGATGGTGAATGCAATGAATCCATGGGGGAACCATCAGTTAATCCCCCTTGGACCATTAAGGGAACCTTTGACCGCACTCACACGTGCAAATATAGTTGTAATCCATCATGCAGACATG : GTCTCAGTAAAGGATGTTGAGGCCATAGCATCAGAAATTCGGAAAGTAAAAAGTTCTCTTTCTATATTCATAAGCAGATTGACGCCTTTGTACTTTCTTAAAGCTGGTAACATGTCTTGTAAATTGGCTTTGAGGGATATCCGCAATACACTTGTCTTATGTATCTC</gDNA_template>
            <first_frame> *  A  P  Y  T  F  H  T  A  I  L  S  H  P  S  S  F  T  S  F  H  S  L  W  L  C  S  S  S  P  P  S  P  L  L  S  W  P  A  S  Q  R  Q  :  V  A  G  A  S  D  *  R  W  K  F  N  L  G  R  *  W  E  D  T  N  G  *  V  S  C  S  L  V  G  C  C  W  K  F  T  S  Y  T  N  K   : G  L  W  W  C  R  *  S  K  N  A  P  K  A  S  V  *  N  T  C  E  D  R  H  R  C  K  Q  G  Q  Y  S  C  L  F  S  E  K  I  W  P  H  Q  P  L  *  A  R  *  Q  E  F  G  E  T  Y  L  *  *  Q  T  W  K  L  F  L  F  *  P  N  R  D  S  N  P  R  *  W  N  A   : A  Y  R  F  V  A  *  H  R  D  C  D  G  E  C  N  E  S  M  G  E  P  S  V  N  P  P  W  T  I  K  G  T  F  D  R  T  H  T  C  K  Y  S  C  N  P  S  C  R  H   : G  L  S  K  G  C  *  G  H  S  I  R  N  S  E  S  K  K  F  S  F  Y  I  H  K  Q  I  D  A  F  V  L  S  *  S  W  *  H  V  L  *  I  G  F  E  G  Y  P  Q  Y  T  C  L  M  Y  L </first_frame>
            <second_frame>  R  L  R  T  L  S  T  L  Q  F  S  L  I  P  L  L  S  L  A  S  T  L  Y  G  F  V  L  P  L  R  H  R  L  Y  C  L  G  L  L  H  K  D  R :   L  P  V  P  V  I  S  V  G  N  L  T  W  G  G  N  G  K  T  P  M  V  E  F  L  A  V  W  L  A  A  A  G  S  S  P  L  I  L  T  R  :  G  Y  G  G  A  D  E  A  K  M  L  Q  R  H  L  C  R  T  P  V  K  I  G  I  G  A  N  R  A  N  T  A  A  S  F  L  K  R  Y  G  H  I  S  P  C  K  H  G  D  K  N  L  E  K  R  I  S  D  N  K  H  G  N  C  S  Y  S  D  Q  I  G  I  A  I  L  D  D  G  M  Q  :  H  I  G  L  W  R  D  I  E  I  V  M  V  N  A  M  N  P  W  G  N  H  Q  L  I  P  L  G  P  L  R  E  P  L  T  A  L  T  R  A  N  I  V  V  I  H  H  A  D  M  :  V  S  V  K  D  V  E  A  I  A  S  E  I  R  K  V  K  S  S  L  S  I  F  I  S  R  L  T  P  L  Y  F  L  K  A  G  N  M  S  C  K  L  A  L  R  D  I  R  N  T  L  V  L  C  I   </second_frame>
            <third_frame>   G  S  V  H  F  P  H  C  N  S  L  S  S  L  F  F  H  *  L  P  L  F  M  A  L  F  F  L  S  A  I  A  F  T  V  L  A  C  F  T  K  T   : G  C  R  C  Q  *  L  A  L  E  I  *  L  G  E  V  M  G  R  H  Q  W  L  S  F  L  Q  F  G  W  L  L  L  E  V  H  L  L  Y  *  Q  G :   V  M  V  V  Q  M  K  Q  K  C  S  K  G  I  C  V  E  H  L  *  R  *  A  *  V  Q  T  G  P  I  Q  L  P  L  F  *  K  D  M  A  T  S  A  L  V  S  T  V  T  R  I  W  R  N  V  S  L  I  T  N  M  E  I  V  L  I  L  T  K  S  G  *  Q  S  *  M  M  E  C  S :   I  S  V  C  G  V  T  S  R  L  *  W  *  M  Q  *  I  H  G  G  T  I  S  *  S  P  L  D  H  *  G  N  L  *  P  H  S  H  V  Q  I  *  L  *  S  I  M  Q  T  W :   S  Q  *  R  M  L  R  P  *  H  Q  K  F  G  K  *  K  V  L  F  L  Y  S  *  A  D  *  R  L  C  T  F  L  K  L  V  T  C  L  V  N  W  L  *  G  I  S  A  I  H  L  S  Y  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40598"/>
                    <exon start="40418" stop="40295"/>
                    <exon start="39718" stop="39479"/>
                    <exon start="39077" stop="38928"/>
                    <exon start="38792" stop="38628"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRTLSTLQFSLIPLLSLASTLYGFVLPLRHRLYCLGLLHKDRLPVPVISVGNLTWGGNGKTPMVEFLAVWLAAAGSSPLILTRGYGGADEAKMLQRHLCRTPVKIGIGANRANTAASFLKRYGHISPCKHGDKNLEKRISDNKHGNCSYSDQIGIAILDDGMQHIGLWRDIEIVMVNAMNPWGNHQLIPLGPLREPLTALTRANIVVIHHADMVSVKDVEAIASEIRKVKSSLSIFISRLTPLYFLKAGNMSCKLALRDIRNTLVLCI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="45529" PGL_stop="45823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45529" e_stop="45823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="45529" e_stop="45823" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45529" stop="45823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGGGAGCTTCGTCGGAGTGGACGGCGTCGGAATGTTAGGTACGCTTTCGATATCGATGATTACCTTGACGACGATGAGTACTTTGTCGAAGACGATGAGGATGAGAGAGGCAGAGAGAAGAAGCTAAAACACTTGCTTAAGCTACAGAGCGATGAAATCGGTGCTGAGTCAACTCCGAGTCGGACTCGACGAGTGTCAGTAGGGCCTGCCACGTCGGCTTCGTCTTCCGACGATGGGGATGGGAGAAAGCCCTCTAAAAAGAGAAAAATTAACGGCGACGATGATAGAGATG</gDNA_template>
            <first_frame> E  R  E  L  R  R  S  G  R  R  R  N  V  R  Y  A  F  D  I  D  D  Y  L  D  D  D  E  Y  F  V  E  D  D  E  D  E  R  G  R  E  K  K  L  K  H  L  L  K  L  Q  S  D  E  I  G  A  E  S  T  P  S  R  T  R  R  V  S  V  G  P  A  T  S  A  S  S  S  D  D  G  D  G  R  K  P  S  K  K  R  K  I  N  G  D  D  D  R  D  </first_frame>
            <second_frame>  R  G  S  F  V  G  V  D  G  V  G  M  L  G  T  L  S  I  S  M  I  T  L  T  T  M  S  T  L  S  K  T  M  R  M  R  E  A  E  R  R  S  *  N  T  C  L  S  Y  R  A  M  K  S  V  L  S  Q  L  R  V  G  L  D  E  C  Q  *  G  L  P  R  R  L  R  L  P  T  M  G  M  G  E  S  P  L  K  R  E  K  L  T  A  T  M  I  E  M </second_frame>
            <third_frame>   E  G  A  S  S  E  W  T  A  S  E  C  *  V  R  F  R  Y  R  *  L  P  *  R  R  *  V  L  C  R  R  R  *  G  *  E  R  Q  R  E  E  A  K  T  L  A  *  A  T  E  R  *  N  R  C  *  V  N  S  E  S  D  S  T  S  V  S  R  A  C  H  V  G  F  V  F  R  R  W  G  W  E  K  A  L  *  K  E  K  N  *  R  R  R  *  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45529" stop="45822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERELRRSGRRRNVRYAFDIDDYLDDDEYFVEDDEDERGREKKLKHLLKLQSDEIGAESTPSRTRRVSVGPATSASSSDDGDGRKPSKKRKINGDDDRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="49186" PGL_stop="50528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49186" e_stop="49518"/>
            <exon e_start="49753" e_stop="49898"/>
            <exon e_start="49975" e_stop="50528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="0.977"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="49186" e_stop="49518" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49519" i_stop="49752" i_length="234"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="49753" e_stop="49898" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49899" i_stop="49974" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="49975" e_stop="50528" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49186" stop="49518"/>
              <exon start="49753" stop="49882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49186" stop="49518"/>
              <exon start="49753" stop="49836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49846" stop="49898"/>
              <exon start="49975" stop="50528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGTACCATCCAAGAGTTGGCTACAAAGAAATTTGAGAAGCTAAGAATCAAGTATGACCGATCTGAAAAGGACGTCAAGTTAGAACAGAAGACAAAATATGGTTCTGTTGTCAGGAAGCAAATAAAGAAGCCGATGGTCTCGATGTTCCAGGAAAATGTTGGCTCTGATTTCTCATCAGGTGCCACTCTTGCTGCAGCTGGAGATAGCCACTATCTTAACAACACTCCTCTTGCTGGAGTGTCGGTGAAACCTTATGGTGTTGATGGGCTTGCTGAAGGAAATTCTTCACTGATAGATCAAAATGTAGACAAGGCAGAAGAATCACTATCAG : GGAAGGGTCCTCTATCCAGATTTGGAAGGAAATTAACTGTGCCTGATGAGAACCGTCGTGGAAGTTACAACATATCCACACAACCAGTTGGCAACACGGACTCCATATTTTCAACGTTTGAAGATGAAAGCAAGCACCTGGTCACT : GTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTAGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATATGAGCCACTTCCAACCCCAGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCCGTACATAAGTTTGGAGCTCAAAAGAATGAGAAAACATCCGAGGACGCAATTGCTCCAAAAGATAAACCTCTTTCTAGGCCTCTATTAGGAGGAAAATCATCATATCTTGGTTCAACTAAGGGTAAGCCTATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAGCAATCTCCTAGGGAGGTCAATCTAGAAAGGAGGTCATCGTTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCTCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGCTAAAAAGATCCATTTCAAATCTGAACCTGATAAAAA</gDNA_template>
            <first_frame> H  V  P  S  K  S  W  L  Q  R  N  L  R  S  *  E  S  S  M  T  D  L  K  R  T  S  S  *  N  R  R  Q  N  M  V  L  L  S  G  S  K  *  R  S  R  W  S  R  C  S  R  K  M  L  A  L  I  S  H  Q  V  P  L  L  L  Q  L  E  I  A  T  I  L  T  T  L  L  L  L  E  C  R  *  N  L  M  V  L  M  G  L  L  K  E  I  L  H  *  *  I  K  M  *  T  R  Q  K  N  H  Y  Q  :  G  R  V  L  Y  P  D  L  E  G  N  *  L  C  L  M  R  T  V  V  E  V  T  T  Y  P  H  N  Q  L  A  T  R  T  P  Y  F  Q  R  L  K  M  K  A  S  T  W  S  L :   L  G  F  I  L  I  M  H  M  L  G  A  L  P  G  L  L  Q  L  S  V  L  *  H  G  E  L  H  P  R  K  L  N  R  H  Y  L  L  D  S  S  L  A  V  G  G  L  G  N  M  S  H  F  Q  P  Q  F  W  C  L  R  T  I  P  *  R  N  L  H  S  S  P  S  P  Y  I  S  L  E  L  K  R  M  R  K  H  P  R  T  Q  L  L  Q  K  I  N  L  F  L  G  L  Y  *  E  E  N  H  H  I  L  V  Q  L  R  V  S  L  W  R  V  V  *  M  S  *  F  P  R  R  S  N  L  L  G  R  S  I  *  K  G  G  H  R  F  F  L  L  E  R  N  L  L  F  V  L  A  P  D  T  S  I  L  I  C  N  P  E  I  S  M  N  L  L  K  R  S  I  S  N  L  N  L  I  K  </first_frame>
            <second_frame>  T  Y  H  P  R  V  G  Y  K  E  I  *  E  A  K  N  Q  V  *  P  I  *  K  G  R  Q  V  R  T  E  D  K  I  W  F  C  C  Q  E  A  N  K  E  A  D  G  L  D  V  P  G  K  C  W  L  *  F  L  I  R  C  H  S  C  C  S  W  R  *  P  L  S  *  Q  H  S  S  C  W  S  V  G  E  T  L  W  C  *  W  A  C  *  R  K  F  F  T  D  R  S  K  C  R  Q  G  R  R  I  T  I  R :   E  G  S  S  I  Q  I  W  K  E  I  N  C  A  *  *  E  P  S  W  K  L  Q  H  I  H  T  T  S  W  Q  H  G  L  H  I  F  N  V  *  R  *  K  Q  A  P  G  H   : C  W  A  L  F  *  S  C  I  C  *  E  P  C  P  V  C  C  N  S  R  S  C  S  M  A  S  C  I  P  E  N  *  T  G  I  T  S  W  I  Q  V  W  P  W  V  G  W  G  I  *  A  T  S  N  P  S  F  G  A  *  E  L  Y  L  E  G  T  S  I  L  L  Q  V  R  T  *  V  W  S  S  K  E  *  E  N  I  R  G  R  N  C  S  K  R  *  T  S  F  *  A  S  I  R  R  K  I  I  I  S  W  F  N  *  G  *  A  Y  G  E  W  F  E  C  L  D  S  H  E  G  A  I  S  *  G  G  Q  S  R  K  E  V  I  V  S  F  F  W  K  E  T  C  C  L  C  *  L  Q  I  P  A  S  *  F  A  I  Q  K  F  Q  *  T  C  *  K  D  P  F  Q  I  *  T  *  *  K </second_frame>
            <third_frame>   R  T  I  Q  E  L  A  T  K  K  F  E  K  L  R  I  K  Y  D  R  S  E  K  D  V  K  L  E  Q  K  T  K  Y  G  S  V  V  R  K  Q  I  K  K  P  M  V  S  M  F  Q  E  N  V  G  S  D  F  S  S  G  A  T  L  A  A  A  G  D  S  H  Y  L  N  N  T  P  L  A  G  V  S  V  K  P  Y  G  V  D  G  L  A  E  G  N  S  S  L  I  D  Q  N  V  D  K  A  E  E  S  L  S   : G  K  G  P  L  S  R  F  G  R  K  L  T  V  P  D  E  N  R  R  G  S  Y  N  I  S  T  Q  P  V  G  N  T  D  S  I  F  S  T  F  E  D  E  S  K  H  L  V  T  :  V  G  L  Y  S  D  H  A  Y  A  R  S  L  A  R  F  A  A  T  L  G  P  V  A  W  R  V  A  S  Q  K  I  E  Q  A  L  P  P  G  F  K  F  G  R  G  W  V  G  E  Y  E  P  L  P  T  P  V  L  V  L  E  N  Y  T  L  K  E  P  P  F  F  S  K  S  V  H  K  F  G  A  Q  K  N  E  K  T  S  E  D  A  I  A  P  K  D  K  P  L  S  R  P  L  L  G  G  K  S  S  Y  L  G  S  T  K  G  K  P  M  E  S  G  L  N  V  L  I  P  T  K  E  Q  S  P  R  E  V  N  L  E  R  R  S  S  F  L  S  S  G  K  K  P  A  V  C  A  S  S  R  Y  Q  H  P  D  L  Q  S  R  N  F  N  E  P  A  K  K  I  H  F  K  S  E  P  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49188" stop="49518"/>
                    <exon start="49753" stop="49898"/>
                    <exon start="49975" stop="50526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTIQELATKKFEKLRIKYDRSEKDVKLEQKTKYGSVVRKQIKKPMVSMFQENVGSDFSSGATLAAAGDSHYLNNTPLAGVSVKPYGVDGLAEGNSSLIDQNVDKAEESLSGKGPLSRFGRKLTVPDENRRGSYNISTQPVGNTDSIFSTFEDESKHLVTVGLYSDHAYARSLARFAATLGPVAWRVASQKIEQALPPGFKFGRGWVGEYEPLPTPVLVLENYTLKEPPFFSKSVHKFGAQKNEKTSEDAIAPKDKPLSRPLLGGKSSYLGSTKGKPMESGLNVLIPTKEQSPREVNLERRSSFLSSGKKPAVCASSRYQHPDLQSRNFNEPAKKIHFKSEPDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49969" e_stop="50523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="49969" e_stop="50523" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49969" stop="50523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAGGTTGGGCTTTATTCTGATCATGCATATGCTAGGAGCCTTGCCCGGTTTGCTGCAACTCTCGGTCCTGTAGCATGGCGAGTTGCATCCCAGAAAATTGAACAGGCATTACCTCCTGGATTCAAGTTTGGCCGTGGGTGGGTTGGGGAATATGAGCCACTTCCAACCCCAGTTTTGGTGCTTGAGAACTATACCTTGAAGGAACCTCCATTCTTCTCCAAGTCCGTACATAAGTTTGGAGCTCAAAAGAATGAGAAAACATCCGAGGACGCAATTGCTCCAAAAGATAAACCTCTTTCTAGGCCTCTATTAGGAGGAAAATCATCATATCTTGGTTCAACTAAGGGTAAGCCTATGGAGAGTGGTTTGAATGTCTTGATTCCCACGAAGGAGCAATCTCCTAGGGAGGTCAATCTAGAAAGGAGGTCATCGTTTCTTTCTTCTGGAAAGAAACCTGCTGTTTGTGCTAGCTCCAGATACCAGCATCCTGATTTGCAATCCAGAAATTTCAATGAACCTGCTAAAAAGATCCATTTCAAATCTGAACCTGAT</gDNA_template>
            <first_frame> I  *  V  G  L  Y  S  D  H  A  Y  A  R  S  L  A  R  F  A  A  T  L  G  P  V  A  W  R  V  A  S  Q  K  I  E  Q  A  L  P  P  G  F  K  F  G  R  G  W  V  G  E  Y  E  P  L  P  T  P  V  L  V  L  E  N  Y  T  L  K  E  P  P  F  F  S  K  S  V  H  K  F  G  A  Q  K  N  E  K  T  S  E  D  A  I  A  P  K  D  K  P  L  S  R  P  L  L  G  G  K  S  S  Y  L  G  S  T  K  G  K  P  M  E  S  G  L  N  V  L  I  P  T  K  E  Q  S  P  R  E  V  N  L  E  R  R  S  S  F  L  S  S  G  K  K  P  A  V  C  A  S  S  R  Y  Q  H  P  D  L  Q  S  R  N  F  N  E  P  A  K  K  I  H  F  K  S  E  P  D </first_frame>
            <second_frame>  F  R  L  G  F  I  L  I  M  H  M  L  G  A  L  P  G  L  L  Q  L  S  V  L  *  H  G  E  L  H  P  R  K  L  N  R  H  Y  L  L  D  S  S  L  A  V  G  G  L  G  N  M  S  H  F  Q  P  Q  F  W  C  L  R  T  I  P  *  R  N  L  H  S  S  P  S  P  Y  I  S  L  E  L  K  R  M  R  K  H  P  R  T  Q  L  L  Q  K  I  N  L  F  L  G  L  Y  *  E  E  N  H  H  I  L  V  Q  L  R  V  S  L  W  R  V  V  *  M  S  *  F  P  R  R  S  N  L  L  G  R  S  I  *  K  G  G  H  R  F  F  L  L  E  R  N  L  L  F  V  L  A  P  D  T  S  I  L  I  C  N  P  E  I  S  M  N  L  L  K  R  S  I  S  N  L  N  L   </second_frame>
            <third_frame>   L  G  W  A  L  F  *  S  C  I  C  *  E  P  C  P  V  C  C  N  S  R  S  C  S  M  A  S  C  I  P  E  N  *  T  G  I  T  S  W  I  Q  V  W  P  W  V  G  W  G  I  *  A  T  S  N  P  S  F  G  A  *  E  L  Y  L  E  G  T  S  I  L  L  Q  V  R  T  *  V  W  S  S  K  E  *  E  N  I  R  G  R  N  C  S  K  R  *  T  S  F  *  A  S  I  R  R  K  I  I  I  S  W  F  N  *  G  *  A  Y  G  E  W  F  E  C  L  D  S  H  E  G  A  I  S  *  G  G  Q  S  R  K  E  V  I  V  S  F  F  W  K  E  T  C  C  L  C  *  L  Q  I  P  A  S  *  F  A  I  Q  K  F  Q  *  T  C  *  K  D  P  F  Q  I  *  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49975" stop="50523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLYSDHAYARSLARFAATLGPVAWRVASQKIEQALPPGFKFGRGWVGEYEPLPTPVLVLENYTLKEPPFFSKSVHKFGAQKNEKTSEDAIAPKDKPLSRPLLGGKSSYLGSTKGKPMESGLNVLIPTKEQSPREVNLERRSSFLSSGKKPAVCASSRYQHPDLQSRNFNEPAKKIHFKSEPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="50729" PGL_stop="52038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50729" e_stop="52038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50729" e_stop="52038" e_length="1310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50729" stop="51535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50736" stop="51276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50801" stop="51174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51047" stop="51715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51047" stop="51683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51047" stop="51672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51047" stop="51667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51252" stop="52033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51283" stop="52038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435605" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51362" stop="52004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51402" stop="52038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGAGCAGTGAATAACAACCTAGACACTACACCAGCAGCGCATTTAACTGCTGATAGCGTTCCAACCGTGAGAAAAGTTGCAGGTTTCTTTCACCAAGAACAGGAGCAGGGCCTTAGTGACCCTGTTCAGTTGATGAGAATGTTGTCTGAAAAGGCTCAAAATCAACAGAACTCTTTGAGTCAGTCCCTAACTGATGCTTCTCCAATTTCCCCTGTGACTCCATCTGTGAGGAAGGATGATTCAGGAAATGCCGCCGCCGCCGCTGCCCGAGCATGGATGTCAGTTGGGGCAGGAGGTTTCAGACAAGGCATGGAAACATCAAGCATGCAGAATAGTCATATTTCTGCTGATTCATTGTATAACCCTTCTCGCAATGTCCAGCAACAAACATCACGAGTTCGGGGTGAACATCCTGCATCAGCAATGCACTTTCAGGCTGAGAACAGTAGTCCACTTCATGCTTTTGTACCTCATCCTGCGAGAGTGGGCAGTGAAGCTCAATTTCAGAATCCTCAAATGATTTTCCGCCAATCAATACCTGCGGACTTGTCTAGGTTCCAGGTACAACCTGCTTGGCAGGGGTTTAATCAACCAGCACAGCCAAGGCAGAAGCAGGATTCCCTCCCCCCTGACTTAAACATTAGTTTCCAGTCATCTGGGTCTCCTGGTCGTCCATCTTCAACCGTTTTGGTTGATTCTCAGCAGCCAGACCTGGCCTTGCAATTATGAAACCAAGCAATTTCTGATAAAAATATTTGAACAGGTTCAAACATACAAGAGCCTTTGGATCTTTTGGCTGGCACGTCTAAATCTTCTTTTTGGGCATCACTGCTTCAGCATACTACTAGCATCTACCTGTAATTGCTGAAGGCTTTGATATCGGATCTCATTTCGTTGAACTTTAAGTTGGCAACTCAACAATTGGAGTCAACTGCTTCATTTATTTTTTTGGGATGTTCCGAGGTATTATTTCTTTATTTGCTATGTTGTAGTGGTGGAGAAGGCAATAGATGTAGTTCAGGTTTAGGATAGGCAGCAGGCACAACTGGAGGATCACTGTCCAGGTCACGAATCGTGGATCGTTTCATGTCAATCACTGACTTGGAATTGCGATTTAGATAGCTGAAGAAGTAAGCATATTACATTAATACTAGTTCGTTCGTTTGTTCCAGTGTTTGCTATATGGTCATTTACGGATAGGAATGCTTTAATTTATTGTACATTGGAGTAAGGTGGGACTGATCTTTGGAGTTTTTGTCATTTTTACTTCAATCATTGTAGTTCTACCTCAGTTTCCTCCTTACACCA</gDNA_template>
            <first_frame> G  E  Q  *  I  T  T  *  T  L  H  Q  Q  R  I  *  L  L  I  A  F  Q  P  *  E  K  L  Q  V  S  F  T  K  N  R  S  R  A  L  V  T  L  F  S  *  *  E  C  C  L  K  R  L  K  I  N  R  T  L  *  V  S  P  *  L  M  L  L  Q  F  P  L  *  L  H  L  *  G  R  M  I  Q  E  M  P  P  P  P  L  P  E  H  G  C  Q  L  G  Q  E  V  S  D  K  A  W  K  H  Q  A  C  R  I  V  I  F  L  L  I  H  C  I  T  L  L  A  M  S  S  N  K  H  H  E  F  G  V  N  I  L  H  Q  Q  C  T  F  R  L  R  T  V  V  H  F  M  L  L  Y  L  I  L  R  E  W  A  V  K  L  N  F  R  I  L  K  *  F  S  A  N  Q  Y  L  R  T  C  L  G  S  R  Y  N  L  L  G  R  G  L  I  N  Q  H  S  Q  G  R  S  R  I  P  S  P  L  T  *  T  L  V  S  S  H  L  G  L  L  V  V  H  L  Q  P  F  W  L  I  L  S  S  Q  T  W  P  C  N  Y  E  T  K  Q  F  L  I  K  I  F  E  Q  V  Q  T  Y  K  S  L  W  I  F  W  L  A  R  L  N  L  L  F  G  H  H  C  F  S  I  L  L  A  S  T  C  N  C  *  R  L  *  Y  R  I  S  F  R  *  T  L  S  W  Q  L  N  N  W  S  Q  L  L  H  L  F  F  W  D  V  P  R  Y  Y  F  F  I  C  Y  V  V  V  V  E  K  A  I  D  V  V  Q  V  *  D  R  Q  Q  A  Q  L  E  D  H  C  P  G  H  E  S  W  I  V  S  C  Q  S  L  T  W  N  C  D  L  D  S  *  R  S  K  H  I  T  L  I  L  V  R  S  F  V  P  V  F  A  I  W  S  F  T  D  R  N  A  L  I  Y  C  T  L  E  *  G  G  T  D  L  W  S  F  C  H  F  Y  F  N  H  C  S  S  T  S  V  S  S  L  H   </first_frame>
            <second_frame>  E  S  S  E  *  Q  P  R  H  Y  T  S  S  A  F  N  C  *  *  R  S  N  R  E  K  S  C  R  F  L  S  P  R  T  G  A  G  P  *  *  P  C  S  V  D  E  N  V  V  *  K  G  S  K  S  T  E  L  F  E  S  V  P  N  *  C  F  S  N  F  P  C  D  S  I  C  E  E  G  *  F  R  K  C  R  R  R  R  C  P  S  M  D  V  S  W  G  R  R  F  Q  T  R  H  G  N  I  K  H  A  E  *  S  Y  F  C  *  F  I  V  *  P  F  S  Q  C  P  A  T  N  I  T  S  S  G  *  T  S  C  I  S  N  A  L  S  G  *  E  Q  *  S  T  S  C  F  C  T  S  S  C  E  S  G  Q  *  S  S  I  S  E  S  S  N  D  F  P  P  I  N  T  C  G  L  V  *  V  P  G  T  T  C  L  A  G  V  *  S  T  S  T  A  K  A  E  A  G  F  P  P  P  *  L  K  H  *  F  P  V  I  W  V  S  W  S  S  I  F  N  R  F  G  *  F  S  A  A  R  P  G  L  A  I  M  K  P  S  N  F  *  *  K  Y  L  N  R  F  K  H  T  R  A  F  G  S  F  G  W  H  V  *  I  F  F  L  G  I  T  A  S  A  Y  Y  *  H  L  P  V  I  A  E  G  F  D  I  G  S  H  F  V  E  L  *  V  G  N  S  T  I  G  V  N  C  F  I  Y  F  F  G  M  F  R  G  I  I  S  L  F  A  M  L  *  W  W  R  R  Q  *  M  *  F  R  F  R  I  G  S  R  H  N  W  R  I  T  V  Q  V  T  N  R  G  S  F  H  V  N  H  *  L  G  I  A  I  *  I  A  E  E  V  S  I  L  H  *  Y  *  F  V  R  L  F  Q  C  L  L  Y  G  H  L  R  I  G  M  L  *  F  I  V  H  W  S  K  V  G  L  I  F  G  V  F  V  I  F  T  S  I  I  V  V  L  P  Q  F  P  P  Y  T  </second_frame>
            <third_frame>   R  A  V  N  N  N  L  D  T  T  P  A  A  H  L  T  A  D  S  V  P  T  V  R  K  V  A  G  F  F  H  Q  E  Q  E  Q  G  L  S  D  P  V  Q  L  M  R  M  L  S  E  K  A  Q  N  Q  Q  N  S  L  S  Q  S  L  T  D  A  S  P  I  S  P  V  T  P  S  V  R  K  D  D  S  G  N  A  A  A  A  A  A  R  A  W  M  S  V  G  A  G  G  F  R  Q  G  M  E  T  S  S  M  Q  N  S  H  I  S  A  D  S  L  Y  N  P  S  R  N  V  Q  Q  Q  T  S  R  V  R  G  E  H  P  A  S  A  M  H  F  Q  A  E  N  S  S  P  L  H  A  F  V  P  H  P  A  R  V  G  S  E  A  Q  F  Q  N  P  Q  M  I  F  R  Q  S  I  P  A  D  L  S  R  F  Q  V  Q  P  A  W  Q  G  F  N  Q  P  A  Q  P  R  Q  K  Q  D  S  L  P  P  D  L  N  I  S  F  Q  S  S  G  S  P  G  R  P  S  S  T  V  L  V  D  S  Q  Q  P  D  L  A  L  Q  L  *  N  Q  A  I  S  D  K  N  I  *  T  G  S  N  I  Q  E  P  L  D  L  L  A  G  T  S  K  S  S  F  W  A  S  L  L  Q  H  T  T  S  I  Y  L  *  L  L  K  A  L  I  S  D  L  I  S  L  N  F  K  L  A  T  Q  Q  L  E  S  T  A  S  F  I  F  L  G  C  S  E  V  L  F  L  Y  L  L  C  C  S  G  G  E  G  N  R  C  S  S  G  L  G  *  A  A  G  T  T  G  G  S  L  S  R  S  R  I  V  D  R  F  M  S  I  T  D  L  E  L  R  F  R  *  L  K  K  *  A  Y  Y  I  N  T  S  S  F  V  C  S  S  V  C  Y  M  V  I  Y  G  *  E  C  F  N  L  L  Y  I  G  V  R  W  D  *  S  L  E  F  L  S  F  L  L  Q  S  L  *  F  Y  L  S  F  L  L  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50731" stop="51459"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAVNNNLDTTPAAHLTADSVPTVRKVAGFFHQEQEQGLSDPVQLMRMLSEKAQNQQNSLSQSLTDASPISPVTPSVRKDDSGNAAAAAARAWMSVGAGGFRQGMETSSMQNSHISADSLYNPSRNVQQQTSRVRGEHPASAMHFQAENSSPLHAFVPHPARVGSEAQFQNPQMIFRQSIPADLSRFQVQPAWQGFNQPAQPRQKQDSLPPDLNISFQSSGSPGRPSSTVLVDSQQPDLALQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="52095" PGL_stop="51552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52095" e_stop="51552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="52095" e_stop="51552" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52095" stop="51552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATACTTTGGAATTTCTCTGAAATTTACGCCATTACATGTAGACGAGAACCCGCTGGTGTAAGGAGGAAACTGAGGTAGAACTACAATGATTGAAGTAAAAATGACAAAAACTCCAAAGATCAGTCCCACCTTACTCCAATGTACAATAAATTAAAGCATTCCTATCCGTAAATGACCATATAGCAAACACTGGAACAAACGAACGAACTAGTATTAATGTAATATGCTTACTTCTTCAGCTATCTAAATCGCAATTCCAAGTCAGTGATTGACATGAAACGATCCACGATTCGTGACCTGGACAGTGATCCTCCAGTTGTGCCTGCTGCCTATCCTAAACCTGAACTACATCTATTGCCTTCTCCACCACTACAACATAGCAAATAAAGAAATAATACCTCGGAACATCCCAAAAAAATAAATGAAGCAGTTGACTCCAATTGTTGAGTTGCCAACTTAAAGTTCAACGAAATGAGATCCGATATCAAAGCCTTCAGCAATTACAGGTAGATGCTAGTAGTATGCTGAAGCAGTGATGCC</gDNA_template>
            <first_frame> T  N  T  L  E  F  L  *  N  L  R  H  Y  M  *  T  R  T  R  W  C  K  E  E  T  E  V  E  L  Q  *  L  K  *  K  *  Q  K  L  Q  R  S  V  P  P  Y  S  N  V  Q  *  I  K  A  F  L  S  V  N  D  H  I  A  N  T  G  T  N  E  R  T  S  I  N  V  I  C  L  L  L  Q  L  S  K  S  Q  F  Q  V  S  D  *  H  E  T  I  H  D  S  *  P  G  Q  *  S  S  S  C  A  C  C  L  S  *  T  *  T  T  S  I  A  F  S  T  T  T  T  *  Q  I  K  K  *  Y  L  G  T  S  Q  K  N  K  *  S  S  *  L  Q  L  L  S  C  Q  L  K  V  Q  R  N  E  I  R  Y  Q  S  L  Q  Q  L  Q  V  D  A  S  S  M  L  K  Q  *  C  </first_frame>
            <second_frame>  P  I  L  W  N  F  S  E  I  Y  A  I  T  C  R  R  E  P  A  G  V  R  R  K  L  R  *  N  Y  N  D  *  S  K  N  D  K  N  S  K  D  Q  S  H  L  T  P  M  Y  N  K  L  K  H  S  Y  P  *  M  T  I  *  Q  T  L  E  Q  T  N  E  L  V  L  M  *  Y  A  Y  F  F  S  Y  L  N  R  N  S  K  S  V  I  D  M  K  R  S  T  I  R  D  L  D  S  D  P  P  V  V  P  A  A  Y  P  K  P  E  L  H  L  L  P  S  P  P  L  Q  H  S  K  *  R  N  N  T  S  E  H  P  K  K  I  N  E  A  V  D  S  N  C  *  V  A  N  L  K  F  N  E  M  R  S  D  I  K  A  F  S  N  Y  R  *  M  L  V  V  C  *  S  S  D  A </second_frame>
            <third_frame>   Q  Y  F  G  I  S  L  K  F  T  P  L  H  V  D  E  N  P  L  V  *  G  G  N  *  G  R  T  T  M  I  E  V  K  M  T  K  T  P  K  I  S  P  T  L  L  Q  C  T  I  N  *  S  I  P  I  R  K  *  P  Y  S  K  H  W  N  K  R  T  N  *  Y  *  C  N  M  L  T  S  S  A  I  *  I  A  I  P  S  Q  *  L  T  *  N  D  P  R  F  V  T  W  T  V  I  L  Q  L  C  L  L  P  I  L  N  L  N  Y  I  Y  C  L  L  H  H  Y  N  I  A  N  K  E  I  I  P  R  N  I  P  K  K  *  M  K  Q  L  T  P  I  V  E  L  P  T  *  S  S  T  K  *  D  P  I  S  K  P  S  A  I  T  G  R  C  *  *  Y  A  E  A  V  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0175E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="59030" PGL_stop="57052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59030" e_stop="58788"/>
            <exon e_start="58053" e_stop="57423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="59030" e_stop="58788" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58787" i_stop="58054" i_length="734"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="58053" e_stop="57423" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59030" stop="58788"/>
              <exon start="58053" stop="57487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58005" stop="57423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58005" stop="57423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTG : GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGA</gDNA_template>
            <first_frame> K  T  F  I  I  L  L  *  L  *  L  F  L  D  N  I  K  C  L  N  C  *  K  K  I  C  G  L  E  F  Y  Y  F  F  L  C  F  H  L  E  L  F  L  F  V  V  E  I  Y  Q  V  K  M  S  L  L  L  K  K  N  M  E  L  L  I  I  K  V  D  *  M  I  I  L  E  L  V  D  L  L  L  :  V  S  Q  L  G  H  L  D  Q  L  G  R  V  *  E  D  P  L  V  V  A  L  A  P  E  S  E  E  G  W  V  S  E  L  G  P  *  V  E  E  L  K  V  E  L  A  L  G  S  V  P  E  P  V  Q  V  S  A  L  V  L  A  A  W  A  V  A  L  P  A  V  H  L  A  L  A  *  V  A  V  A  E  L  V  V  E  *  A  A  A  E  E  L  E  L  V  *  A  A  V  A  V  L  A  I  M  L  A  V  E  Q  A  I  M  A  V  E  L  A  E  G  L  A  A  L  V  V  *  A  A  E  G  L  A  A  L  V  V  E  A  A  E  G  T  A  V  D  M  A  A  D  G  R  E  I  N  V  N  V  S  S  C  G  V  S  H  C  I  N  I  L  V  V  A  F  *  F  H  V  M  C  F  V  K  C  C  E  *  D  V  M  I  *  C  N  V  G  *  *  I  S  V  I  *  F  S  V  W  Y  Q  </first_frame>
            <second_frame>  K  L  L  L  Y  Y  Y  S  Y  N  S  F  W  I  I  L  N  V  *  I  A  R  K  K  Y  V  G  *  N  F  I  T  S  F  C  V  F  T  W  S  F  S  C  L  W  *  K  F  T  K  *  K  *  V  S  C  *  K  K  I  W  S  Y  *  L  S  R  W  I  R  *  *  Y  W  S  W  W  I  C  C  W :   *  A  N  W  A  I  W  T  N  W  A  G  S  R  R  I  H  *  W  W  R  *  R  R  S  R  R  K  V  G  Y  R  S  W  A  R  K  W  R  S  *  R  *  S  W  R  W  D  R  C  R  S  R  C  R  C  R  R  W  S  W  R  H  G  R  W  R  C  R  Q  S  T  W  H  W  H  R  W  Q  W  R  S  *  W  W  S  K  R  Q  R  K  N  W  S  W  C  R  R  Q  W  R  C  W  R  *  C  W  R  W  S  R  R  S  W  Q  W  N  W  R  R  V  W  R  P  W  *  C  K  R  R  R  V  W  R  P  W  *  W  K  R  R  R  V  R  Q  W  I  W  R  R  M  A  V  K  L  M  *  T  *  V  A  V  A  L  A  I  A  L  I  F  *  *  L  H  F  N  F  M  L  C  A  L  *  N  V  V  S  R  M  *  *  Y  N  V  M  L  V  N  K  L  V  *  F  N  L  V  F  G  I  R </second_frame>
            <third_frame>   N  F  Y  Y  I  I  I  V  I  T  L  F  G  *  Y  *  M  F  K  L  L  E  K  N  M  W  A  R  I  L  L  L  L  F  V  F  S  L  G  A  F  L  V  C  G  R  N  L  P  S  E  N  E  S  L  V  E  K  K  Y  G  V  T  D  Y  Q  G  G  L  D  D  N  I  G  A  G  G  F  A  A   : G  E  P  T  G  P  S  G  P  T  G  P  G  L  G  G  S  I  S  G  G  V  S  A  G  V  G  G  R  L  G  I  G  A  G  P  V  S  G  G  A  E  G  R  V  G  V  G  I  G  A  G  A  G  A  G  V  G  A  G  P  G  G  M  G  G  G  A  A  G  S  P  P  G  I  G  I  G  G  S  G  G  V  S  G  G  V  S  G  S  G  R  I  G  A  G  V  G  G  S  G  G  V  G  D  N  V  G  G  G  A  G  D  H  G  S  G  T  G  G  G  F  G  G  P  G  S  V  S  G  G  G  F  G  G  P  G  S  G  S  G  G  G  Y  G  S  G  Y  G  G  G  W  P  *  N  *  C  K  R  K  *  L  W  R  *  P  L  H  *  Y  F  S  S  C  I  L  I  S  C  Y  V  L  C  E  M  L  *  V  G  C  N  D  I  M  *  C  W  L  I  N  *  C  N  L  I  *  C  L  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58980" stop="58788"/>
                    <exon start="58053" stop="57593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFKLLEKNMWARILLLLFVFSLGAFLVCGRNLPSENESLVEKKYGVTDYQGGLDDNIGAGGFAAGEPTGPSGPTGPGLGGSISGGVSAGVGGRLGIGAGPVSGGAEGRVGVGIGAGAGAGVGAGPGGMGGGAAGSPPGIGIGGSGGVSGGVSGSGRIGAGVGGSGGVGDNVGGGAGDHGSGTGGGFGGPGSVSGGGFGGPGSGSGGGYGSGYGGGWP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59030" e_stop="58788"/>
            <exon e_start="58053" e_stop="57438"/>
            <exon e_start="57067" e_stop="57052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="59030" e_stop="58788" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58787" i_stop="58054" i_length="734"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="58053" e_stop="57438" e_length="616"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57437" i_stop="57068" i_length="370"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="57067" e_stop="57052" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59030" stop="58788"/>
              <exon start="58053" stop="57487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57908" stop="57438"/>
              <exon start="57067" stop="57052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTG : GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTA : TCAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> K  T  F  I  I  L  L  *  L  *  L  F  L  D  N  I  K  C  L  N  C  *  K  K  I  C  G  L  E  F  Y  Y  F  F  L  C  F  H  L  E  L  F  L  F  V  V  E  I  Y  Q  V  K  M  S  L  L  L  K  K  N  M  E  L  L  I  I  K  V  D  *  M  I  I  L  E  L  V  D  L  L  L  :  V  S  Q  L  G  H  L  D  Q  L  G  R  V  *  E  D  P  L  V  V  A  L  A  P  E  S  E  E  G  W  V  S  E  L  G  P  *  V  E  E  L  K  V  E  L  A  L  G  S  V  P  E  P  V  Q  V  S  A  L  V  L  A  A  W  A  V  A  L  P  A  V  H  L  A  L  A  *  V  A  V  A  E  L  V  V  E  *  A  A  A  E  E  L  E  L  V  *  A  A  V  A  V  L  A  I  M  L  A  V  E  Q  A  I  M  A  V  E  L  A  E  G  L  A  A  L  V  V  *  A  A  E  G  L  A  A  L  V  V  E  A  A  E  G  T  A  V  D  M  A  A  D  G  R  E  I  N  V  N  V  S  S  C  G  V  S  H  C  I  N  I  L  V  V  A  F  *  F  H  V  M  C  F  V  K  C  C  E  *  D  V  M  I  *  C  N  V  G  *  *  I  S  V  I  *  F   : I  K  K  K  K   </first_frame>
            <second_frame>  K  L  L  L  Y  Y  Y  S  Y  N  S  F  W  I  I  L  N  V  *  I  A  R  K  K  Y  V  G  *  N  F  I  T  S  F  C  V  F  T  W  S  F  S  C  L  W  *  K  F  T  K  *  K  *  V  S  C  *  K  K  I  W  S  Y  *  L  S  R  W  I  R  *  *  Y  W  S  W  W  I  C  C  W :   *  A  N  W  A  I  W  T  N  W  A  G  S  R  R  I  H  *  W  W  R  *  R  R  S  R  R  K  V  G  Y  R  S  W  A  R  K  W  R  S  *  R  *  S  W  R  W  D  R  C  R  S  R  C  R  C  R  R  W  S  W  R  H  G  R  W  R  C  R  Q  S  T  W  H  W  H  R  W  Q  W  R  S  *  W  W  S  K  R  Q  R  K  N  W  S  W  C  R  R  Q  W  R  C  W  R  *  C  W  R  W  S  R  R  S  W  Q  W  N  W  R  R  V  W  R  P  W  *  C  K  R  R  R  V  W  R  P  W  *  W  K  R  R  R  V  R  Q  W  I  W  R  R  M  A  V  K  L  M  *  T  *  V  A  V  A  L  A  I  A  L  I  F  *  *  L  H  F  N  F  M  L  C  A  L  *  N  V  V  S  R  M  *  *  Y  N  V  M  L  V  N  K  L  V  *  F  N  L  :  S  K  K  K  K  </second_frame>
            <third_frame>   N  F  Y  Y  I  I  I  V  I  T  L  F  G  *  Y  *  M  F  K  L  L  E  K  N  M  W  A  R  I  L  L  L  L  F  V  F  S  L  G  A  F  L  V  C  G  R  N  L  P  S  E  N  E  S  L  V  E  K  K  Y  G  V  T  D  Y  Q  G  G  L  D  D  N  I  G  A  G  G  F  A  A   : G  E  P  T  G  P  S  G  P  T  G  P  G  L  G  G  S  I  S  G  G  V  S  A  G  V  G  G  R  L  G  I  G  A  G  P  V  S  G  G  A  E  G  R  V  G  V  G  I  G  A  G  A  G  A  G  V  G  A  G  P  G  G  M  G  G  G  A  A  G  S  P  P  G  I  G  I  G  G  S  G  G  V  S  G  G  V  S  G  S  G  R  I  G  A  G  V  G  G  S  G  G  V  G  D  N  V  G  G  G  A  G  D  H  G  S  G  T  G  G  G  F  G  G  P  G  S  V  S  G  G  G  F  G  G  P  G  S  G  S  G  G  G  Y  G  S  G  Y  G  G  G  W  P  *  N  *  C  K  R  K  *  L  W  R  *  P  L  H  *  Y  F  S  S  C  I  L  I  S  C  Y  V  L  C  E  M  L  *  V  G  C  N  D  I  M  *  C  W  L  I  N  *  C  N  L  I  Y :   Q  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58980" stop="58788"/>
                    <exon start="58053" stop="57593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFKLLEKNMWARILLLLFVFSLGAFLVCGRNLPSENESLVEKKYGVTDYQGGLDDNIGAGGFAAGEPTGPSGPTGPGLGGSISGGVSAGVGGRLGIGAGPVSGGAEGRVGVGIGAGAGAGVGAGPGGMGGGAAGSPPGIGIGGSGGVSGGVSGSGRIGAGVGGSGGVGDNVGGGAGDHGSGTGGGFGGPGSVSGGGFGGPGSGSGGGYGSGYGGGWP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="65614" PGL_stop="64693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65614" e_stop="65493"/>
            <exon e_start="65139" e_stop="64693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65614" e_stop="65493" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65492" i_stop="65140" i_length="353"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="65139" e_stop="64693" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65614" stop="65493"/>
              <exon start="65139" stop="64693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATCTTCAAAATTACAATCAAAAAATGATTAACTCTAAGTTTTTTGTTCTCATAGTTCTATATTCTCTCTTTTGCTTTCTTAGTGTCACGAAGTTTGTCTATTCTAAGGTCGACTCAAAC : GTTGTAAAGTCTACCGCAAAACCATGGACAGATTCCAAGAACTACATGCTTGGAGAAGAGAAGTCATTTCATCATCTTGTTGCCTATGCTGAAGGACCTAGTGGAGGTATTGGGGTTGAAATGTCAAGAGGAGGTTCTAGTTCTGATTCTGGTTCTGGTTATGATGAAGGTGGACGAGGTGGAGGTGTAGGTGGAGGAGGAAGTGGTGAAGGAAGAGGAAAGGGTTCAGGTTATGGTTATGGTTATGGGGAAGGGTATGGTGAAGGCAGTGGGGGTGGAGGATATGGAGGTGGGGGTGGAGAAGGAAGTCGTGAAGGAACAGGAGATGGTTATGGTTATGGTTCTGGGGAAGGGTATGGTGAAGGAGCTAGTGGTGGGGGATATGGAGGTGGTGAAGGTAGTGGCGAGGGATCAGGAGATGGTTATGGTTCTGGTTCTGGGGAAGGG</gDNA_template>
            <first_frame> I  I  F  K  I  T  I  K  K  *  L  T  L  S  F  L  F  S  *  F  Y  I  L  S  F  A  F  L  V  S  R  S  L  S  I  L  R  S  T  Q  T :   L  *  S  L  P  Q  N  H  G  Q  I  P  R  T  T  C  L  E  K  R  S  H  F  I  I  L  L  P  M  L  K  D  L  V  E  V  L  G  L  K  C  Q  E  E  V  L  V  L  I  L  V  L  V  M  M  K  V  D  E  V  E  V  *  V  E  E  E  V  V  K  E  E  E  R  V  Q  V  M  V  M  V  M  G  K  G  M  V  K  A  V  G  V  E  D  M  E  V  G  V  E  K  E  V  V  K  E  Q  E  M  V  M  V  M  V  L  G  K  G  M  V  K  E  L  V  V  G  D  M  E  V  V  K  V  V  A  R  D  Q  E  M  V  M  V  L  V  L  G  K   </first_frame>
            <second_frame>  L  S  S  K  L  Q  S  K  N  D  *  L  *  V  F  C  S  H  S  S  I  F  S  L  L  L  S  *  C  H  E  V  C  L  F  *  G  R  L  K   : R  C  K  V  Y  R  K  T  M  D  R  F  Q  E  L  H  A  W  R  R  E  V  I  S  S  S  C  C  L  C  *  R  T  *  W  R  Y  W  G  *  N  V  K  R  R  F  *  F  *  F  W  F  W  L  *  *  R  W  T  R  W  R  C  R  W  R  R  K  W  *  R  K  R  K  G  F  R  L  W  L  W  L  W  G  R  V  W  *  R  Q  W  G  W  R  I  W  R  W  G  W  R  R  K  S  *  R  N  R  R  W  L  W  L  W  F  W  G  R  V  W  *  R  S  *  W  W  G  I  W  R  W  *  R  *  W  R  G  I  R  R  W  L  W  F  W  F  W  G  R  </second_frame>
            <third_frame>   Y  L  Q  N  Y  N  Q  K  M  I  N  S  K  F  F  V  L  I  V  L  Y  S  L  F  C  F  L  S  V  T  K  F  V  Y  S  K  V  D  S  N  :  V  V  K  S  T  A  K  P  W  T  D  S  K  N  Y  M  L  G  E  E  K  S  F  H  H  L  V  A  Y  A  E  G  P  S  G  G  I  G  V  E  M  S  R  G  G  S  S  S  D  S  G  S  G  Y  D  E  G  G  R  G  G  G  V  G  G  G  G  S  G  E  G  R  G  K  G  S  G  Y  G  Y  G  Y  G  E  G  Y  G  E  G  S  G  G  G  G  Y  G  G  G  G  G  E  G  S  R  E  G  T  G  D  G  Y  G  Y  G  S  G  E  G  Y  G  E  G  A  S  G  G  G  Y  G  G  G  E  G  S  G  E  G  S  G  D  G  Y  G  S  G  S  G  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65612" stop="65493"/>
                    <exon start="65139" stop="64693"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLQNYNQKMINSKFFVLIVLYSLFCFLSVTKFVYSKVDSNVVKSTAKPWTDSKNYMLGEEKSFHHLVAYAEGPSGGIGVEMSRGGSSSDSGSGYDEGGRGGGVGGGGSGEGRGKGSGYGYGYGEGYGEGSGGGGYGGGGGEGSREGTGDGYGYGSGEGYGEGASGGGYGGGEGSGEGSGDGYGSGSGEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="70278" PGL_stop="69071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70278" e_stop="70194"/>
            <exon e_start="69536" e_stop="69071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70278" e_stop="70194" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.820">
            <gDNA_intron_boundary i_start="70193" i_stop="69537" i_length="657"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="69536" e_stop="69071" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70278" stop="70194"/>
              <exon start="69536" stop="69071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTGTTCAGTGATTGTAAAGAATATGTCATTCTCACCTGTCAAAGAAGCAACTGGGTTGACAAAGTTGACGAATTGTGCCAG : GTCTACGAGACTGTTGAGACAATGGTACTCAGCCCAGATGAAGTTATAAGGATCACCTTTCAACCTGAAGAACCTTCAGCTGCACCCGCGAATGAACTAAAAAGTCGATTCAAAAGGCTTAGCCTCATATTCAGAAACAAGGATAAGCTATCACCGCGAGACCAGAAGAACCAGGAGGAGAGTCCATTACGCCAACCATTCTCATCCATATTTTCAAAGAAACCTCCAAAGCCCGACAGTTCATCTCCAGATAAACCTGTTACTTCCGTCGAAAATGACTGGACAATTGTATAATCACAGTTTTTTATTGTTGTTCATTGTGTAACTATAAATATATGTTACTAGTTTAGGCAGAGACCCGATGAATATTCCAGCATTGTGAGTTTCAGCTGATGCTTGTGACGAAACAGTTTATGGAAGAACCTTAGAGTATTTTATATGATGGAAATTATTTTTCATGAAAAAC</gDNA_template>
            <first_frame> E  A  V  Q  *  L  *  R  I  C  H  S  H  L  S  K  K  Q  L  G  *  Q  S  *  R  I  V  P   : G  L  R  D  C  *  D  N  G  T  Q  P  R  *  S  Y  K  D  H  L  S  T  *  R  T  F  S  C  T  R  E  *  T  K  K  S  I  Q  K  A  *  P  H  I  Q  K  Q  G  *  A  I  T  A  R  P  E  E  P  G  G  E  S  I  T  P  T  I  L  I  H  I  F  K  E  T  S  K  A  R  Q  F  I  S  R  *  T  C  Y  F  R  R  K  *  L  D  N  C  I  I  T  V  F  Y  C  C  S  L  C  N  Y  K  Y  M  L  L  V  *  A  E  T  R  *  I  F  Q  H  C  E  F  Q  L  M  L  V  T  K  Q  F  M  E  E  P  *  S  I  L  Y  D  G  N  Y  F  S  *  K   </first_frame>
            <second_frame>  K  L  F  S  D  C  K  E  Y  V  I  L  T  C  Q  R  S  N  W  V  D  K  V  D  E  L  C  Q  :  V  Y  E  T  V  E  T  M  V  L  S  P  D  E  V  I  R  I  T  F  Q  P  E  E  P  S  A  A  P  A  N  E  L  K  S  R  F  K  R  L  S  L  I  F  R  N  K  D  K  L  S  P  R  D  Q  K  N  Q  E  E  S  P  L  R  Q  P  F  S  S  I  F  S  K  K  P  P  K  P  D  S  S  S  P  D  K  P  V  T  S  V  E  N  D  W  T  I  V  *  S  Q  F  F  I  V  V  H  C  V  T  I  N  I  C  Y  *  F  R  Q  R  P  D  E  Y  S  S  I  V  S  F  S  *  C  L  *  R  N  S  L  W  K  N  L  R  V  F  Y  M  M  E  I  I  F  H  E  K  </second_frame>
            <third_frame>   S  C  S  V  I  V  K  N  M  S  F  S  P  V  K  E  A  T  G  L  T  K  L  T  N  C  A  R :   S  T  R  L  L  R  Q  W  Y  S  A  Q  M  K  L  *  G  S  P  F  N  L  K  N  L  Q  L  H  P  R  M  N  *  K  V  D  S  K  G  L  A  S  Y  S  E  T  R  I  S  Y  H  R  E  T  R  R  T  R  R  R  V  H  Y  A  N  H  S  H  P  Y  F  Q  R  N  L  Q  S  P  T  V  H  L  Q  I  N  L  L  L  P  S  K  M  T  G  Q  L  Y  N  H  S  F  L  L  L  F  I  V  *  L  *  I  Y  V  T  S  L  G  R  D  P  M  N  I  P  A  L  *  V  S  A  D  A  C  D  E  T  V  Y  G  R  T  L  E  Y  F  I  *  W  K  L  F  F  M  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70277" stop="70194"/>
                    <exon start="69536" stop="69243"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFSDCKEYVILTCQRSNWVDKVDELCQVYETVETMVLSPDEVIRITFQPEEPSAAPANELKSRFKRLSLIFRNKDKLSPRDQKNQEESPLRQPFSSIFSKKPPKPDSSSPDKPVTSVENDWTIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="75147" PGL_stop="72072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75147" e_stop="75113"/>
            <exon e_start="74979" e_stop="74816"/>
            <exon e_start="73288" e_stop="72950"/>
            <exon e_start="72859" e_stop="72795"/>
            <exon e_start="72355" e_stop="72307"/>
            <exon e_start="72192" e_stop="72072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.668" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.327" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75147" e_stop="75113" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.776">
            <gDNA_intron_boundary i_start="75112" i_stop="74980" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74979" e_stop="74816" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.668" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74815" i_stop="73289" i_length="1527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73288" e_stop="72950" e_length="339"/>
          </exon>
          <intron i_serial="3" don_prob="0.327" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72949" i_stop="72860" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72859" e_stop="72795" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.787">
            <gDNA_intron_boundary i_start="72794" i_stop="72356" i_length="439"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72355" e_stop="72307" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.511">
            <gDNA_intron_boundary i_start="72306" i_stop="72193" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="0.926">
            <gDNA_exon_boundary e_start="72192" e_stop="72072" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75147" stop="75113"/>
              <exon start="74979" stop="74816"/>
              <exon start="73288" stop="72950"/>
              <exon start="72859" stop="72795"/>
              <exon start="72355" stop="72307"/>
              <exon start="72192" stop="72072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75146" stop="75113"/>
              <exon start="74979" stop="74816"/>
              <exon start="73288" stop="73244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTTGTCTCTTATCAATTTACTGCTAGATGCAG : GACATTTTGCTGGAAGGAAGGTTGATTCTGCAAATGCTTCATCTTTGCCTAAGGATCTTCATGGTGCTCCTCCTGAAAGTTTTATCACTAATCTTGCTGATGTAACTGGACGCATGAAATCATTGCGTAAAATGGCATTATTATGGTGCAAAATTGTTGCTGAA : TTACGGAGGCTGTGGTCTGAAGGACAATATATCCCTGGCATTCCTCCAGATCAAATCCCGGACCTGAATTCATGTCTTTTGTATCAGCAACTCCAGGTTATTAACTGTTGCATTTCCAGAAAAAAGCGACGCATTGCAGCCACTGAATCGTTGGATTCGGCTGTCAGGCTAGGAAGTTCAAAAACAGATGTTCTTGCTGATGACGGCACCCTTCCTGCAACTCCTGTCTTGTATGCTAAAGTTAACACTGGAGAATTAATTCTTCGGCTAGGAATGGACAGCAAATCTGATCTAAGAATGCTGGAAACGGGTGAACCTATATATACGCCAATAATGCAG : GAAGAACCTTTGCTAACGGAAGATCTAATTAAAGAAACAGAGGAGCTGGTGCTCCGAACTGGGAG : TCTTGGAGCTGGGTGCTCTCAACTCCTATCTGACATGCAGGCTTTCAAG : GCAGCAAACCCTGGGTGTATATTAGAAGATTTCGTTAGATGGCATTCTCCTCCTGATTGGATGGAATGTGATACAATTGATGGAATTAATGAAACCCCTGATGCTAATGACTCATTGTCTG</gDNA_template>
            <first_frame> G  L  V  S  Y  Q  F  T  A  R  C  R :   T  F  C  W  K  E  G  *  F  C  K  C  F  I  F  A  *  G  S  S  W  C  S  S  *  K  F  Y  H  *  S  C  *  C  N  W  T  H  E  I  I  A  *  N  G  I  I  M  V  Q  N  C  C  *   : I  T  E  A  V  V  *  R  T  I  Y  P  W  H  S  S  R  S  N  P  G  P  E  F  M  S  F  V  S  A  T  P  G  Y  *  L  L  H  F  Q  K  K  A  T  H  C  S  H  *  I  V  G  F  G  C  Q  A  R  K  F  K  N  R  C  S  C  *  *  R  H  P  S  C  N  S  C  L  V  C  *  S  *  H  W  R  I  N  S  S  A  R  N  G  Q  Q  I  *  S  K  N  A  G  N  G  *  T  Y  I  Y  A  N  N  A   : G  R  T  F  A  N  G  R  S  N  *  R  N  R  G  A  G  A  P  N  W  E  :  S  W  S  W  V  L  S  T  P  I  *  H  A  G  F  Q   : G  S  K  P  W  V  Y  I  R  R  F  R  *  M  A  F  S  S  *  L  D  G  M  *  Y  N  *  W  N  *  *  N  P  *  C  *  *  L  I  V   </first_frame>
            <second_frame>  V  L  S  L  I  N  L  L  L  D  A   : G  H  F  A  G  R  K  V  D  S  A  N  A  S  S  L  P  K  D  L  H  G  A  P  P  E  S  F  I  T  N  L  A  D  V  T  G  R  M  K  S  L  R  K  M  A  L  L  W  C  K  I  V  A  E  :  L  R  R  L  W  S  E  G  Q  Y  I  P  G  I  P  P  D  Q  I  P  D  L  N  S  C  L  L  Y  Q  Q  L  Q  V  I  N  C  C  I  S  R  K  K  R  R  I  A  A  T  E  S  L  D  S  A  V  R  L  G  S  S  K  T  D  V  L  A  D  D  G  T  L  P  A  T  P  V  L  Y  A  K  V  N  T  G  E  L  I  L  R  L  G  M  D  S  K  S  D  L  R  M  L  E  T  G  E  P  I  Y  T  P  I  M  Q  :  E  E  P  L  L  T  E  D  L  I  K  E  T  E  E  L  V  L  R  T  G  S :   L  G  A  G  C  S  Q  L  L  S  D  M  Q  A  F  K  :  A  A  N  P  G  C  I  L  E  D  F  V  R  W  H  S  P  P  D  W  M  E  C  D  T  I  D  G  I  N  E  T  P  D  A  N  D  S  L  S  </second_frame>
            <third_frame>   S  C  L  L  S  I  Y  C  *  M  Q  :  D  I  L  L  E  G  R  L  I  L  Q  M  L  H  L  C  L  R  I  F  M  V  L  L  L  K  V  L  S  L  I  L  L  M  *  L  D  A  *  N  H  C  V  K  W  H  Y  Y  G  A  K  L  L  L  N :   Y  G  G  C  G  L  K  D  N  I  S  L  A  F  L  Q  I  K  S  R  T  *  I  H  V  F  C  I  S  N  S  R  L  L  T  V  A  F  P  E  K  S  D  A  L  Q  P  L  N  R  W  I  R  L  S  G  *  E  V  Q  K  Q  M  F  L  L  M  T  A  P  F  L  Q  L  L  S  C  M  L  K  L  T  L  E  N  *  F  F  G  *  E  W  T  A  N  L  I  *  E  C  W  K  R  V  N  L  Y  I  R  Q  *  C  R :   K  N  L  C  *  R  K  I  *  L  K  K  Q  R  S  W  C  S  E  L  G   : V  L  E  L  G  A  L  N  S  Y  L  T  C  R  L  S  R :   Q  Q  T  L  G  V  Y  *  K  I  S  L  D  G  I  L  L  L  I  G  W  N  V  I  Q  L  M  E  L  M  K  P  L  M  L  M  T  H  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0175E07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75146" stop="75113"/>
                    <exon start="74979" stop="74816"/>
                    <exon start="73288" stop="72950"/>
                    <exon start="72859" stop="72795"/>
                    <exon start="72355" stop="72307"/>
                    <exon start="72192" stop="72073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSLINLLLDAGHFAGRKVDSANASSLPKDLHGAPPESFITNLADVTGRMKSLRKMALLWCKIVAELRRLWSEGQYIPGIPPDQIPDLNSCLLYQQLQVINCCISRKKRRIAATESLDSAVRLGSSKTDVLADDGTLPATPVLYAKVNTGELILRLGMDSKSDLRMLETGEPIYTPIMQEEPLLTEDLIKETEELVLRTGSLGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWMECDTIDGINETPDANDSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 150 chains have been computed
$ 
$ memory statistics:
$ 169368 bytes spliced alignments in total
$ 85 spliced alignments have been stored
$ 1992 bytes was the average size of a spliced alignment
$ 27472 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1526 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 162 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:44:15
-->
