<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 05:33:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577669" ref_strand="+" ref_description="SGN-E577669 [LE15BF03]">
      <seq>gactttctgacaaacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctggtggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatgtgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcggcgactgatctctttcactcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2696" stop="5630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2996" g_stop="3171" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5330" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="715" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E577669" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2996" e_stop="3171"/>
          <exon e_start="4790" e_stop="5330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCC</genome_strand>
        <mrna_strand>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATGTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGGCGACTGATCTCTTTCACTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245118" ref_strand="+" ref_description="SGN-E245118 [cLEF-13-F16]">
      <seq>actttctgacaaacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcaatctgttggttatatttgtggccagcttcatggattctccacaggctgttgtgtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2697" stop="5140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2997" g_stop="3171" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="4840" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="226" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E245118" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2997" e_stop="3171"/>
          <exon e_start="4790" e_stop="4840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCA</genome_strand>
        <mrna_strand>ACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAATCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGCCAGCTTCATGGATTCTCCACAGGCTGTTGTGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707811" ref_strand="+" ref_description="SGN-E707811 [FA34AB09]">
      <seq>gacatacttccaaatccactatcatcattcttgttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgcctacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2704" stop="5765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3004" g_stop="3171" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5465" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="841" r_length="673" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E707811" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3004" e_stop="3171"/>
          <exon e_start="4790" e_stop="5465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTT</genome_strand>
        <mrna_strand>GACATACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCC-TACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300416" ref_strand="+" ref_description="SGN-E300416 [cLET-45-C10]">
      <seq>ttgattttattctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2737" stop="5591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3037" g_stop="3171" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5291" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="637" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E300416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3037" e_stop="3171"/>
          <exon e_start="4790" e_stop="5291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAG</genome_strand>
        <mrna_strand>TTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265454" ref_strand="+" ref_description="SGN-E265454 [cLEI-9-P13]">
      <seq>ctctgcaaatcacaattattctcatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2748" stop="5510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3048" g_stop="3171" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5210" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="545" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E265454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3048" e_stop="3171"/>
          <exon e_start="4790" e_stop="5210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGA</genome_strand>
        <mrna_strand>CTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719516" ref_strand="+" ref_description="SGN-E719516 [FC08AD05]">
      <seq>tcggccgaattgaaaatcacaattattcccatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcaaagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacaataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattaaaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2751" stop="5718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3054" g_stop="3171" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="131" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5418" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="758" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E719516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3054" e_stop="3171"/>
          <exon e_start="4790" e_stop="5418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGAT</genome_strand>
        <mrna_strand>AAATCACAATTATTCCCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAAAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACAATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAAAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721932" ref_strand="+" ref_description="SGN-E721932 [FC15CH04]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatcctttgcttcgttttaagagttgggttttcttcattttccataaaagatcactcttttgggtagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2771" stop="5777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3071" g_stop="3171" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="145" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5477" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="831" r_length="686" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E721932" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3071" e_stop="3171"/>
          <exon e_start="4790" e_stop="5477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGA</genome_strand>
        <mrna_strand>ATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266568" ref_strand="+" ref_description="SGN-E266568 [cLEI-5-P21]">
      <seq>tagatttttggcttgataatcagagactcagtctgttggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2834" stop="5650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3134" g_stop="3171" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618">
            <donor d_prob="0.287" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4790" g_stop="5350" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="597" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E266568" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3134" e_stop="3171"/>
          <exon e_start="4790" e_stop="5350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTGGTAAAGAATTGGGTTCTTGGACTTTTAGTTGTTTATGTTGTTATTCTTTGACTTTGTTCTGTTTTTTGCTTGTTTAGTTTCTGAGTTGAGACTGTTTTCTGTTCTTGATTTTGAGGTGTGTTTTGTGTTTTTTTTTTTGTCTTGAAGGGGAAAAGGGGTTAAAGATTGTAGCTTTGTTCATGTAGATTTGGTGCAGGATTTAAGTTGAATAGTTAAGGGGAAAGGTAAAGATTGTGGCTTTATGCATTCTCATGGGTGCTGCACAGTTAAAACACTTGTAGGTTTATATACTTTATCTTTGGTGTCTGAGTTTAGTTTTAACACTTTGTGAGGAAGTTAAAGATTGTAGCTTTATTTGCTTTTCTGAGGTGCTGAATGGTTAGTACTTTATGGGGGTTCTGTTTGTAGGTTTATTTATTTTATCTTTGGTGTCTGAGTTAAGTTTAACCCTTTGGTAGGATTGGAAGTTAAAGATTGTTATCTTTATTTGCTTCTCAGAGGTGCTGGATTAGTTAATACTTTATGGGGTTCTGTTTATTTTTAGGATCAGAGCTGTGTGATTTGTTTCTTTAAGGAGGGAACCTGAGTTTTGAAGTGATTCTTTTTGGTGTGTTTTGGGGTTTTGTCTCTCCTTCCTTTTAGCTTTTTTTCAGTTTGGTATGAGTAAAGCTGAATTCTTTTTGAAAATAGGAGAATAGATTGAGTTAACTAGTTGACTAGCTTGGAGCAACGGTAAAGTTGTATCAGTGTGACCTATAAGTGTTTGAGTGGTGGAATAACGAGTGATGATTGTAGCAGGGTAGACTGTCTACATCACACCTCTTAGGATGCTTTGTGCACTTGGCTTCTATTTTTTTTAGGAGGTTATTCTTTTGATTCTTTAGCATAATTTCGGTATATTTCCTGATTTTGACTGTTTCTGCCTTCTATGCTATATTATTCTTCATCTTAAAATCAATTAACATGATGCTCCAATCTCAATCTTTCACTTCAGGGTTATTTTTGTTCTATTCGAGGAAAAAGATTTCATTTTTGTTTCCATTTACTTCTTTCTGTAATGAATTGTACATGTGTGGAATTGTTCTTCTTCTTGACATGATCTTGTTGTTATCTTTGATCCTTTATTTGCCATGTTATCATTTATGAGCTCTGAATAATTGTCACTTGGTCCTAATATGTATCTGAGTTAGGTTAACGAGTTTATTCGTTAAGGTTTCACTTTAAATAAAGCTTCTAGTTCTTGTTTGATGGAGCATGTTACACAATAGGTAAATTCCACATTGAAATGAGAGATACGTACACATTTTGGCTCGATGATTGCATAGCCCAAGGGACAAATCCATAAGGTCTGTAGGGTCAAAGTGGACAATACGTATCATGGGTTTGGGCTGTGACATATAGTGTGGAGAGACCATTCGTTGGGAACTCCAGTATAGTTGTTGTGTGCTCCAAAACAAGTTTGTGTTAAACAAATATATTTCTACTCCTTCAATTACTAGCCGTTCCTCTGTTATAAGCTATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGT</genome_strand>
        <mrna_strand>TAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700383" ref_strand="+" ref_description="SGN-E700383 [FA12DH03]">
      <seq>atttaatttgtggagatcattcagtttttgttcatagctatgtgttcagtattagccgatgtgatatctgatattgatcttatccttcgattttcttaggttatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgaaaataatctcatggtctccgagtacttcaatatgccaagcagtaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4391" stop="5852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4691" g_stop="5552" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E700383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4691" e_stop="5552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCC</genome_strand>
        <mrna_strand>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAAAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273247" ref_strand="+" ref_description="SGN-E273247 [cLEM-24-B21]">
      <seq>tatatttgtggtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4492" stop="5731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4792" g_stop="5431" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E273247" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4792" e_stop="5431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAG</genome_strand>
        <mrna_strand>TATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553546" ref_strand="+" ref_description="SGN-E553546 [cTSC-1-H16]">
      <seq>gtcagcttcatggattctccacagtctgttgtgtcaccatttaagagttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgtttcaagtgaggctactaatttccaccaatatcctaagcgtgattcgccttctagcagcatatcaaccattgactctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4502" stop="6015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4802" g_stop="5715" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E553546" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4802" e_stop="5715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCA</genome_strand>
        <mrna_strand>GTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTTCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTTCTAGCAGCATATCAACCATTGACTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689537" ref_strand="+" ref_description="SGN-E689537 [LH_Ea01C15]">
      <seq>tagttcctccgttttcgcggactctgagaagcaaagcactgaatttttcagcaagaacgcctctggcctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtatgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaatgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctgtttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaggcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4547" stop="5899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4846" g_stop="5599" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E689537" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4846" e_stop="5599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACC</genome_strand>
        <mrna_strand>TAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCACTGAATTTTTCAGCAAGAACGCCTCTGGCCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTATGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAATGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTGTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAGGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310281" ref_strand="+" ref_description="SGN-E310281 [cTOA-1-I2]">
      <seq>ttcctccgttttcgcggactctgagaagcaaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4549" stop="5518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4849" g_stop="5218" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E310281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4849" e_stop="5218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTG</genome_strand>
        <mrna_strand>TTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708772" ref_strand="+" ref_description="SGN-E708772 [FA36CH09]">
      <seq>gcatagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctcccacagttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4576" stop="6026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4876" g_stop="5726" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E708772" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4876" e_stop="5726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCA</genome_strand>
        <mrna_strand>GCATAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCCACAGTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266348" ref_strand="+" ref_description="SGN-E266348 [cLEI-3-G23]">
      <seq>caaagcaatgaatttttcagcaagaacgcttctggtctatcccggggaatttctgctcatagagaggatgttgaaatctgcaacatggaggacttcattggtgttctcgacgtgtacgtacatcaggctagagatatccacaacatctgcatttaccataaacaagatgtttatgcaaaactttgccttacaagtgatcctgaaagtgcagtctccactcaaaccattaatggcggtgggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4577" stop="5725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4877" g_stop="5425" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E266348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4877" e_stop="5425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTC</genome_strand>
        <mrna_strand>CAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267784" ref_strand="+" ref_description="SGN-E267784 [cLEI-12-H18]">
      <seq>ggaaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccacatggaaaatgttccaagtgaggctactaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4815" stop="5957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5115" g_stop="5657" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E267784" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5115" e_stop="5657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTT</genome_strand>
        <mrna_strand>GGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCACATGGAAAATGTTCCAAGTGAGGCTACTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263543" ref_strand="+" ref_description="SGN-E263543 [cLEG-60-I12]">
      <seq>aaaagtccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagaccccaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4817" stop="6106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5117" g_stop="5806" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E263543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5117" e_stop="5806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAAT</genome_strand>
        <mrna_strand>AAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCCAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256907" ref_strand="+" ref_description="SGN-E256907 [cLEG-44-E5]">
      <seq>tccagtcttcaacgaaaatctaaagctcaatgttcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcggggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4822" stop="5882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5122" g_stop="5582" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E256907" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5122" e_stop="5582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTC</genome_strand>
        <mrna_strand>TCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCGGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206194" ref_strand="+" ref_description="SGN-E206194 [cLEC-29-K23]">
      <seq>tcgtacgataaaatgttctgttaaatgtgagatatggatgatgagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4855" stop="6045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5155" g_stop="5745" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E206194" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5155" e_stop="5745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCC</genome_strand>
        <mrna_strand>TCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706910" ref_strand="+" ref_description="SGN-E706910 [FA31CB03]">
      <seq>gagcagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagccatttactgagtcattggcaaagatgaagcttccgctggacatttgaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4897" stop="6308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5197" g_stop="6008" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E706910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5197" e_stop="6008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGG</genome_strand>
        <mrna_strand>GAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTC-A-ATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCCATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTTGAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254098" ref_strand="+" ref_description="SGN-E254098 [cLEG-34-N1]">
      <seq>cagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaagcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4900" stop="6136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5200" g_stop="5836" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E254098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5200" e_stop="5836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATG</genome_strand>
        <mrna_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAAGCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261317" ref_strand="+" ref_description="SGN-E261317 [cLEG-68-P10]">
      <seq>cagggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattcctcaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4900" stop="5917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5200" g_stop="5617" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E261317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5200" e_stop="5617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCG</genome_strand>
        <mrna_strand>CAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCCTCAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700122" ref_strand="+" ref_description="SGN-E700122 [FA12AG10]">
      <seq>ggcacgagggagcatggtgaggaattatttggaagaccaattgttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4897" stop="6190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5203" g_stop="5892" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="703" r_length="688" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E700122" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5203" e_stop="5892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTC</genome_strand>
        <mrna_strand>GGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCT-C-TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253705" ref_strand="+" ref_description="SGN-E253705 [cLEG-32-C5]">
      <seq>ttgggatttgcactagtccccttatctgaaatcctcatgaaaaatggaaagctagaaaaagagttctctctttcgtcgactgatctctttcactccccagcaggatttgtgcacttgtccctttcttacaatggaacttcacctgaagttattgaaattcctgcttttcccatattagaaactgatgcatctcggaccagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtaccttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgataccggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4931" stop="6046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5231" g_stop="5746" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E253705" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5231" e_stop="5746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGA-CAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTA-CTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATA-CGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCT</genome_strand>
        <mrna_strand>TTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGCTAGAAAAAGAGTTCTCTC--TTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACCAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACCTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACCGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712616" ref_strand="+" ref_description="SGN-E712616 [FB05BD05]">
      <seq>tgaaattcctgcttttcccatattagaaactgatgcatctcggacagacggcgaagcacgtgagtcccttccaaatgagtttgacaaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactanttaactttttgtctggtgaagacttgttttacttcagtacccttgtattaattaaaaacttctgttcctaatatatgctcagcaatttcccttggaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5085" stop="92349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5385" g_stop="6337" g_length="953"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="955" r_length="955" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6338" i_stop="6634" i_length="297">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.762" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6635" g_stop="6654" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="975" r_length="20" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E712616" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>973</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5385" e_stop="6337"/>
          <exon e_start="6635" e_stop="6654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTA-CCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGC-ATTTCCCTTGGAATAATTTTGAATATGTGCTGTGCTGTTTCATCCTTAGTGTAACTACAACATTCCAGTCTAGAGACAACTAACACCCCCTTCCCCCTCCCCCCTCCTCCCGGCCTTGTCGTGCCTGCCTTGAATGCCATTGTCTGATATTAGTTTCTGCAACAAGTAATCAGCTCGAGCTCGATGAAGAAAAATGCTGTTGTAGGCTGATTGTCAACATAAGAACACTTTTTATAAGATGAGTACTTATGAAACTTACATGAATAGTGTTTCTGCTTTCATCCACTCACTATGAATCTTTCACACAACTAGGCACACATTTCAGAAAAATA</genome_strand>
        <mrna_strand>TGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTANTTAACTTTTTGTCTGGTGAAGACTTGTTTTACTTCAGTACCCTTGTATTAATTAAAAACTTCTGTTCCTAATATATGCTCAGCAATTTCCCTTGGAATA.........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353721" ref_strand="+" ref_description="SGN-E353721 [cTOS-10-O9]">
      <seq>aaaattgagttcccagatcctaagattgtaaatgagaataatctcatggtctccgagtacttcaatatgccaagcagtaatccagattctcaaagctcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattanggagcagtctaaaaggataagtgaacactaaggattttatgaatgtggtggttatccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5170" stop="6508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5470" g_stop="6208" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E353721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5470" e_stop="6208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTA-GGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTT</genome_strand>
        <mrna_strand>AAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTANGGAGC-AGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGGTTATCCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351522" ref_strand="+" ref_description="SGN-E351522 [cTOS-12-O21]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttantgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctggtgaagacttgttttacttcagtacctttgtagtaattagaacttctgttcttatatatgctcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5266" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5566" g_stop="6323" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E351522" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5566" e_stop="6323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTA-TGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACC-TTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCA</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTANTGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGGTGAAGACTTGTTTTACTTCAGTACCTTTGTAG-TAATTAGAACTTCTGTTCTT-ATATATGCTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352477" ref_strand="+" ref_description="SGN-E352477 [cTOS-9-I23]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaagacttgttttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5266" stop="6574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5566" g_stop="6274" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E352477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5566" e_stop="6274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTT</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353604" ref_strand="+" ref_description="SGN-E353604 [cTOS-15-N10]">
      <seq>tcggatagcttggtctcttctgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgntctatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5266" stop="6390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5566" g_stop="6090" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E353604" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5566" e_stop="6090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGC</genome_strand>
        <mrna_strand>TCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGNTCTATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275268" ref_strand="+" ref_description="SGN-E275268 [cLEN-9-O8]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5286" stop="6457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5586" g_stop="6157" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E275268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5586" e_stop="6157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTA</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275068" ref_strand="+" ref_description="SGN-E275068 [cLEN-9-G9]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5286" stop="6398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5586" g_stop="6098" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E275068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5586" e_stop="6098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTT</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275056" ref_strand="+" ref_description="SGN-E275056 [cLEN-9-C9]">
      <seq>tgatacggaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5286" stop="6384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5586" g_stop="6084" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E275056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5586" e_stop="6084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTAT</genome_strand>
        <mrna_strand>TGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693377" ref_strand="+" ref_description="SGN-E693377 [LH_Ea01C15](-)">
      <seq>gaaaaccagctcagtctagaagtcgatgtccatatggaaaatgttccaagtgaggctactaatttccaccaatatcctaagcgtgattcgcctcctagcagcatatcaaccattgactctccaacagctttgcatcccgcaagctatcagtcctccgagacccaaggagcttccaagtcgccaggggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagcctcccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacacccagttctgataattggagttcagatcagacatcgcagacacccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5293" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5593" g_stop="6220" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E693377" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5593" e_stop="6220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATG</genome_strand>
        <mrna_strand>GAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGCTTTGCATCCCGCAAGCTATCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGGGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCTCCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACACCCAGTTCTGATAATTGGAGTTCAGATCAGACATCGCAGACACCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715376" ref_strand="+" ref_description="SGN-E715376 [FB14AD09]">
      <seq>caacagttttgcatcccgcaagctctcagtcctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaagacttgttttacttcagtaccttgtagttaattagaacttctgttcttaatatatgctcagcatttcccttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5414" stop="6638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5714" g_stop="6343" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E715376" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5714" e_stop="6343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</genome_strand>
        <mrna_strand>CAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732659" ref_strand="+" ref_description="SGN-E732659 [LB02DB06]">
      <seq>cttctccgagacccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgttaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5443" stop="6562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5742" g_stop="6260" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="534"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E732659" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5742" e_stop="6260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>CTTCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTTAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234629" ref_strand="+" ref_description="SGN-E234629 [cLEL-6-H19](-)">
      <seq>ccaaggagcttccaagtcgccagaggaagaatatgcatcagcttctaaagaatgtcccacaggtaaaaataatgttggaaatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5454" stop="6562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5754" g_stop="6260" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="523"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E234629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5754" e_stop="6260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>CCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235109" ref_strand="+" ref_description="SGN-E235109 [cLEL-6-H19](-)">
      <seq>aatgctgagagcaacatatcggaaagcaagccacccagtgcatttccaaagccagtggtcattgagccagagcagaaggttgtgcaacaggatattgtggatatgtacatgaaaagtatgcagcaatttactgagtcattggcaaagatgaagcttccgctggacattgaaaatgggacaaccagttctgataattcgagttcagatcagacatcgcagacgcccaagagcactagctcaagggtgttctatggcagcagagctttcttctaagcttttgtgaatggttctcgaataacttatagcgcgattaggagcaagtctaaaaggataagtgaacactaaggattttatgaatgtggtgtttatccattttatcttgtgaatgcttaaaatgctctgaactaattaactttttgtctgttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5533" stop="6562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5833" g_stop="6260" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E235109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5833" e_stop="6260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</genome_strand>
        <mrna_strand>AATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343660" ref_strand="+" ref_description="SGN-E343660 [cTOF-20-N14]">
      <seq>tgtgatataggttaagattggtgatttgggttttgcaactatagtagggaagagtcattcagcacattcggttcttggaaccccagagttcatggcaccggagttgtatgatgaggattataccgagctgattgatatctactcgtttgggatgtgtgttttggagatggtgacgttggaactaccttatagtgagtgtgataacgtggtgaagatatacaagaaggtaatatccggagtgaggcccaaggccatggacaaggttaaagatctcgaggtcaagaagttcattgagaagtgtcttgctcagcctagggttagaccctctgcttctgaactccttcaagaccctttctttaatgatattaatgatgatgacgaaaacgacgatgaagagtatactagtaacaactattggcatgcttaagtcagccatagctattatttgctagttgctattatattagttagttgtattaggttttgttgtgatatttttggtgttgatttgttacttatagtggtttttgccttttcttccaaaaagaagaaagaaaatggttttgctttttatgaaactattgtaaaagaaaaaacaatagaaaaaagagtgtatttttattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12248" stop="1425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11948" g_stop="11310" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E343660" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11948" e_stop="11310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGTACAT</genome_strand>
        <mrna_strand>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAG-AAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346308" ref_strand="+" ref_description="SGN-E346308 [cTOF-23-D22]">
      <seq>caactcagagatggaacaaactcctccggaggcttccgtcacaacgccgctggatcgaacggcggtgctaagtacaagctcatgactcctgctatgcttccgatctctaggtccgcctgtatcaccatacctcccggtctcagtccttcctccttcctcgaatctcctgttctcctttctaacatcaaagctgagccatctccgactacaggttccttctccaaatttcaaacagtgcaaggctctggtggggctgctgcattcttattgacaagaggttatgctagtggcaatacatacactgaaagaaaagcaagctgctttgaatacaaatatgccggtggatctagttctacatcaggatcattagcaactgaacatgtggtaatgctctattagaaaatattattgatgttggattagaaacaaaaagcaaatgaaacaagagcttttttattagcagtagccctctttaacaactgactgatgtttaatttagaaaaaatgaaagtttaactctgaggttcaggttcctgttcttgtgtctttctcttgatatggcatctatttgaggttaatgtcaaatgtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16873" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17173" g_stop="17361" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17362" i_stop="18562" i_length="1201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18563" g_stop="18965" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="592" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E346308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17173" e_stop="17361"/>
          <exon e_start="18563" e_stop="18965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAAGTCAGTTCTCAATCTCTATTTCTCTGTTATTTTTAACCATTAATACTGGACGAAATTTAAGCTTGTTTTGTTAGAATTGTAACACATTAGCTGAAGAAATGAAGTTATTTTGACTACGATGCTTTTTCTAATCGGAGAATTTTAGTAGATCCAGGATGTTGAGGTGATTATCAGCAATAATTAGCTGTTGTTATGTTCTGATTGATAAGAAAACGAAGGATAAGCTATAATGAAAAATAATTAGGGAATCTTAACAATTAATTAGTTTAAGTGTTGTTAAGAGTAAGGTGTATAGTTGTGCTGTCTTCAATTGAGTGAAATGCAAACTATTAGTAAAACTTTTTTCCTTTTTGATTGCGTCATAATATACTAATCAGTGGAGGATTTGAGGATTTTTTTGATGTGATTGTTGCTTTCTTAAAGTACGGTTTGAATTATTGATTAGATATTTGGTTCTTTTCATTGGCATTTGCAATTTGCAACTTGTTAGTTTGATTCTTCTGCATATAACTAAGTGCTCATTTAAGAATATAATATTTATCTGTAAATATAAGTTTGTTTATCTGTGCAAATTGTCACCGTTGGTTCTGATGCTTACATGAACAATGTACTGTATTGGTGCATATATCGTTTTTTAATAGAATTATGCTTGTGGCCTTTACCAGAATACATATTCTTCGTTCTTCTGCGTGGAAAAAGCTTAGTTAGGGATCAGTGTTGTTTTTTCACATAATGAATCTTCCTTTTTCACAAGGTGCTCAGCTTTTCCACTATGTTGTTCCTTGTGGAAAAAGATGTTTATTTTTTAGTGCTCAGTCCGTATAATGGCATCAGTAAATTCCCCTACATTGTTCTTCTGACCTACTTATATGCTTTTTAAAGCTTGCCTAAATTTTTGTCTTATTCGAACGTAAATGCTAATGTTCTGTTGCAGATAAATGATATTTTGCACTACTATAAGTAGCATCTATCTTCCTCCACCCAAATGAAAAGAAATGAACCTGAAGGTGACGTAAAAAAGAAAAAACTTTTCTCCCTCCTCAACGGAGCAGAAAACTGAGAAAGAGTAGTAAATATATGTACCATGTCTGTCAATGGATGAATGTGTTCCCCTTTGGAAAAGAAAATTGTGATCAATAACTTGAAAGTTTATTTCATTTACCTATCAAAACACTTAGTCTATTTCACTTATAACCTGCAGGCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</genome_strand>
        <mrna_strand>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237940" ref_strand="+" ref_description="SGN-E237940 [cLED-18-G6]">
      <seq>catctgaaagatcatcagatgatgggtataactggcgaaagtatggccagaaacttgttaaaggaagtgaatttccgagaagctattacaaatgtacatatccaaactgcgaagtgaaaaagatatttgagcggtcacctgaaggacaaataacagagattgtttataaaggttctcatgatcatcctaaaccccaactgagccgccgattttctcctggtgctctcatgtctgttcaagaagataaatgtgagaaagaagtgtgtttcagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="19835" stop="20708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20135" g_stop="20408" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E237940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20135" e_stop="20408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</genome_strand>
        <mrna_strand>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254842" ref_strand="+" ref_description="SGN-E254842 [cLEG-33-J13]">
      <seq>taaaactgagcctagtagtactcccgtatcacctcagcaagcggacactgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatgggaacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctggtatgatgctagtacagccagctgcagttgcagcgcgctatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20262" stop="22062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20562" g_stop="20690" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20691" i_stop="20759" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20760" g_stop="20915" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="285" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20916" i_stop="21413" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21414" g_stop="21762" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="634" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E254842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20562" e_stop="20690"/>
          <exon e_start="20760" e_stop="20915"/>
          <exon e_start="21414" e_stop="21762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATT</genome_strand>
        <mrna_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260171" ref_strand="+" ref_description="SGN-E260171 [cLEG-52-H17]">
      <seq>taaaactgagcctagtagtactcccgtatcacctcagcaagcggacactgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatggggacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctgggatgatgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20262" stop="22028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20562" g_stop="20690" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20691" i_stop="20759" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20760" g_stop="20915" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="285" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20916" i_stop="21413" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21414" g_stop="21728" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="600" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E260171" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20562" e_stop="20690"/>
          <exon e_start="20760" e_stop="20915"/>
          <exon e_start="21414" e_stop="21728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGT</genome_strand>
        <mrna_strand>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGGACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGGATGATGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707276" ref_strand="+" ref_description="SGN-E707276 [FA32CC01]">
      <seq>ctgatggtcttgaaggagcagggtcacagatgcatggcactaatgatgatatggatgaggatgatcaatttgcgaaaagaaggaaaatggatggtgggatggatataacaccagtgattaagcctatccgtgaaccacgcgttgttgttcaaacagtcagtgaagttgatatattggatgatgggtacaagtggcgcaaatatggacagaaggtggtccgaggcaatcctaatcctaggagctattacaagtgcaccaatgctggatgccctgtcaggaaacatgtggagagggcttctcatgatccaaaagctgttatcaccacatatgaaggaaaacataaccacgatgtacccgctgcaaaaaataataaccatgaaatgacaggatcctcgcctgtaaccggcagttcaaggatcagggcaggagagaccaactcacttagtctggatctaggcgttagtactggatatcgtcttgataatgggaacaacgggcaacttcacaccctccatcaccaagttcaagtttcacgttctggtatgatgctagtacagccagctgcagttgcagcgcgctatggtattgtacatggtggtatgagccgatttggagctatagataatcgtgttcaaggacctagttttgaaactttgcctttacaaccttctactcagtctctccaaaactatggaaagatacttcttggcccgtgaatcgtatctaccatcaactataagagcttaacaataagaagccaccatctatattttttcctgcatcttggtggattacaaagatatctctagttgaagtataaatacttctaggactcgtcgcgtgatgctgtataatacaccttcacctagtgttctttgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20309" stop="22357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20609" g_stop="20690" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20691" i_stop="20759" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20760" g_stop="20915" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="238" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20916" i_stop="21413" i_length="498">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21414" g_stop="22057" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="882" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E707276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20609" e_stop="20690"/>
          <exon e_start="20760" e_stop="20915"/>
          <exon e_start="21414" e_stop="22057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAGGTAAAACTGTTGGAACTCCTTCAGTTCATTCCTGCAATAGATCTAATAGATGGTTAAAATTTTACGCAGGAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAGGTATGTAATGTTTATGGTTTGTAGTTATCTGGACATGTGACCTCATGTCACATTATTGGCGTCTACACAGACCTGATTTATCTTGCTATGTAACAAGTATCTGACAAAAGTCATTACTGGTTGTTGGTTGTGTTGGCTATTTATGAAATAGTCATTTAAAATGTTCTGAGTTGTAGCCTAAGAAAGTCTGACACTTGTCATATATGAGCCTTCTCTTGATGAGAGGTAAGAGCCTAAAAGAGACAATGAAGTCTCTAGGATAGCAGATCCTTAATCCATCAATCCCAAGATCTTCTTCGTTGTAAGCCAACAGTCTATAGTTTGGAATTTAAGATGAATTAGAGACCATTTATCATTAAGTTCATCAAACATTCACACTCTTCATGATTCTAATAGATCTCTGGTAAGCTTTTGTATCATGCCAGAAGCTAGGGATTTCGAGCATTTTCTTATCCGAGTGGTCAATCTTTTCTCCTGATTTCATGTCATGTCATGCAGGAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</genome_strand>
        <mrna_strand>CTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG.....................................................................GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352981" ref_strand="+" ref_description="SGN-E352981 [cTOS-14-O19]">
      <seq>tttttttttttttttttttgagagataaaaaagacttcgattagtttctgatagaacagatcctagcaagattaaatgacctgtctttttaaattaatacaaacagaaaaaagaagaggtgccactatctgtctcaccattatcaagctacaagttacatgcacctaattacggtaggtaggatctacacagactttacctctacctttgcaggatagagagactgtttccgataagagattatttccatgcacaagaagcaactaaatctcgattcatccagccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1424" stop="22877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22220" g_stop="22241" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22242" i_stop="22311" i_length="70">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="22577" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="288" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E352981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22220" e_stop="22241"/>
          <exon e_start="22312" e_stop="22577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATAATTTTCATTTGATATACATCCTGAATGTGTTGTTTTATATCGCACAAACTGACCAAATGAACTATGAACATGAACAATGTGAGAGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGAG......................................................................AGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367924" ref_strand="+" ref_description="SGN-E367924 [TUS-22-B15](-)">
      <seq>gcgttggaactcaaaatcacagagacagacttctgaggatggttaaaagcttatctcccaagattgttaccttagtggagcaagagtccaacactaacacagcccaattcttccccaggttcttggagacactgaactactacctatctgttttcgaatcaatagacgtggctctacctagagaccataaggaacgaatcaacgttgagcaacactgcttagcccgtgaaattgtcaacatattagcatgtgaaggggcagagagagtggaacgacacgagctgcttgaaaggtggagatcacgatttgctgtggccgggtttaaaccatatccgttaagctcctcagtaaatgctactatcaagaccctgctggagaattactaccaaagttatacgcttaatgagagaaatggcgcgctctatcttggctggatgaatcgagatttagttgcttcttgtgcatggaaataatctcttatcggaaacagtctctctatcctgcaaaggtagaggtaaagtctgtgtagatcctacctaccgtaattaggtgcatgtaacttgtagcttgataatggtgagacagatagtggcacctcttcttttttctgtttgtattaatttaaaaagacaggtcatttaatcttgctaggatctgttctatcagaaactaatcgaagtcttttttatctctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23302" stop="22006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23002" g_stop="22307" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E367924" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23002" e_stop="22307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTTAGTGGAGCAAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATATCCGTTAAGCTCCTCAGTAAATGCTACTATCAAGACCCTGCTGGAGAATTACTACCAAAGTTATACGCTTAATGAGAGAAATGGCGCGCTCTATCTTGGCTGGATGAATCGAGATTTAGTTGCTTCTTGTGCATGGAAATAATCTCTTATCGGAAACAGTCTCTCTATCCTGCAAAGGTAGAGGTAAAGTCTGTGTAGATCCTACCTACCGTAATTAGGTGCATGTAACTTGTAGCTTGATAATGGTGAGACAGATAGTGGCACCTCTTCTTTTTTCTGTTTGTATTAATTTAAAAAGACAGGTCATTTAATCTTGCTAGGATCTGTTCTATCAGAAACTAATCGAAGTCTTTTTTATCTCTCAC</genome_strand>
        <mrna_strand>GCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTTAGTGGAGCAAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATATCCGTTAAGCTCCTCAGTAAATGCTACTATCAAGACCCTGCTGGAGAATTACTACCAAAGTTATACGCTTAATGAGAGAAATGGCGCGCTCTATCTTGGCTGGATGAATCGAGATTTAGTTGCTTCTTGTGCATGGAAATAATCTCTTATCGGAAACAGTCTCTCTATCCTGCAAAGGTAGAGGTAAAGTCTGTGTAGATCCTACCTACCGTAATTAGGTGCATGTAACTTGTAGCTTGATAATGGTGAGACAGATAGTGGCACCTCTTCTTTTTTCTGTTTGTATTAATTTAAAAAGACAGGTCATTTAATCTTGCTAGGATCTGTTCTATCAGAAACTAATCGAAGTCTTTTTTATCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239943" ref_strand="+" ref_description="SGN-E239943 [cLED-29-B9]">
      <seq>aagagtccaacactaacacagcccaattctttcccaggttcttggagacactgaactactacctatctgttttcgaatcaatagacgtggctctacctagagaccataaggaacgaatcaacgttgagcaacactgcttagcccgtgaaattgtcaacatattagcatgtgaaggggcagagagagtggaacgacacgagctgcttgaaaggtggagatcacgatttgctgtggccgggtttaaaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23221" stop="22372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22921" g_stop="22672" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E239943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22921" e_stop="22672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATA</genome_strand>
        <mrna_strand>AAGAGTCCAACACTAACACAGCCCAATTCTTTCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367925" ref_strand="+" ref_description="SGN-E367925 [TUS-22-B15]">
      <seq>aatagcggagaataatttgatcacagctgaatggttaatgtcagaactacgcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggngaaccattggctgttaactttgcgctcgtcttgcaccatatgcctgatgagagcgttggaactcaaaatcacagagacagacttctgaggatggttaaaagcttatctcccaagattgttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23913" stop="22630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23613" g_stop="22930" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E367925" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23613" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTT</genome_strand>
        <mrna_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGNGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313535" ref_strand="+" ref_description="SGN-E313535 [cTOA-12-I6]">
      <seq>ttaatgtcagaactactcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctactcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcatcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggggaaccattggctgttaactttgcgctcgtcttgcaccatatgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23879" stop="22707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23579" g_stop="23007" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E313535" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23579" e_stop="23007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGAT</genome_strand>
        <mrna_strand>TTAATGTCAGAACTACTCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTACTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCATCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313537" ref_strand="+" ref_description="SGN-E313537 [cTOA-12-I20]">
      <seq>ttaatgtcttaactactcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgtccagatattgagattgagcatcttaaggttcttcccggggaaccattggctgttaactttgcgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23879" stop="22726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23579" g_stop="23026" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E313537" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23579" e_stop="23026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGT</genome_strand>
        <mrna_strand>TTAATGTCTTAACTACTCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238467" ref_strand="+" ref_description="SGN-E238467 [cLED-17-C7]">
      <seq>aatagcggagaataatttgatcacagctgaatggttaatgtcagaactacgcacggtggtatctgtttgtgggtctcccatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctcgggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctcttgcagcacggcctggtggacctccaagaatccgcatcacagggattgatgactctacatcagcttacgccagaggaggagggattgaaatcgtaggtcgaagactgtcaagcattgctgcatcttgcaatgtacctttcgaatttcatcccgtgtctgcttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23913" stop="22794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23613" g_stop="23094" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E238467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23613" e_stop="23094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGT</genome_strand>
        <mrna_strand>AATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319109" ref_strand="+" ref_description="SGN-E319109 [cTOB-16-C5]">
      <seq>aagagcctactagtgtcgagctattctcgtacatgcacttgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggtgcaattgttgatgccatgaaagatgagaactcaattcatataatcgatttccacattgctcacggtagccagtggatcaccttaatccatgctcttgcatcacggcctggtggacctccaataatccgcatcacagggattgatgactctacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23746" stop="22900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23446" g_stop="23200" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E319109" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23446" e_stop="23200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATC</genome_strand>
        <mrna_strand>AAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCACATTGCTCACGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCATCACGGCCTGGTGGACCTCCAATAATCCGCATCACAGGGATTGATGACTCTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365695" ref_strand="+" ref_description="SGN-E365695 [cLPT-8-M3]">
      <seq>gaggtgcttgtgctaaagcaatagcggagaataatttgatcacagctgaatggttaatgtcagaactacgcacggtggtatctgtttgtgggtctccgatacaacgtttaggtgcttatatgctggaaggtttagttgctagattggcctcctccggaagctccatctacaaggccttaaggtgcaaagagcctactagtgtcgagctattctcgtacatgcacctgctttatgaaatctgtccatacttcaagtttggatatttgtcagcaaatggcgcaattgttgatgccatgaaagatgagaactcgattcatataatcgatttccagattgctcagggtagccagtggatcaccttaatccatgctctcgcagcgcggcctggtggacctccaagaatccgcatcacagggattgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23928" stop="22908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23632" g_stop="23208" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E365695" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23632" e_stop="23208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGAC</genome_strand>
        <mrna_strand>GAGGTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCGATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCCGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACCTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGCGCAATTGTTGATGCCATGAAAGATGAGAACTCGATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTCGCAGCGCGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554466" ref_strand="+" ref_description="SGN-E554466 [cTSC-4-G16]">
      <seq>ttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgtaacgaggcggggtgtatgctggaaatgtttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcttggaatcatttaataatactatccctgtgactgcagccaatcaagttccatcagagtcggataaattggttggaatgatggagatgatgcctagcggagacttgaaagaagttctaattgcttgtgctaaagcaatagcggagaataattttgatcacagctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25854" stop="23282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25554" g_stop="25540" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25539" i_stop="24297" i_length="1243">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24296" g_stop="23582" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="731" r_length="716" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E554466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25554" e_stop="25540"/>
          <exon e_start="24296" e_stop="23582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAA-TTTGATCACAGCTGAAT</genome_strand>
        <mrna_strand>TTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTTGATCACAGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334555" ref_strand="+" ref_description="SGN-E334555 [cTOD-23-N22]">
      <seq>tgaaaatgaagtttgattttttttttctctgactttctttttagtattttcttcaccactagtggcttactaaaaatggaatatgcgttgtctaaagttaagctttttttctctgattatttcattaaccatgttcttcaatctttttgcttaagatttcttctctgagtatcaggatagttggatctttgaaatgtgttatggatgtgaatgttaaagcttggagctggtgaactttttgtaacgaggcggggtgtatgctggaaatgtttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctgaagcacaagttaagggaacttgaaactgcaatgctggggccagattcagaaagcttggaatcatttaataatactatccctgtgactgcagccaatcaagttccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="26014" stop="23395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25714" g_stop="25540" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25539" i_stop="24297" i_length="1243">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24296" g_stop="23695" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="777" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E334555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25714" e_stop="25540"/>
          <exon e_start="24296" e_stop="23695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAAGTTATAATTGTTGTAAAAAGTTGAATCTTTTTGTGTTAACTTGATAGAAATTGAATTCTTTTGTATGAACTTGGAACCCCTTTTCATTCTTGAAAAAAAATTTGGATCTTTTTGTATAAACTTGAAAAAAAAAATTGAATCTTTTTGTATTAACTTGAAACCTATTTCATTCTTGGAAAAAAAATGGATCTTTTTGTTTTTCTTGTTTTAGTTTTTTGTTGTTGGGGTGGGGGTTCTTTATGTTTAGCTAATTCTGGTGTTAGGATGCAAGTGGTAAGCTTCAGTTCTTTATGTTTAGCTAAATTCTGGTGTTAAGATGCAAGTGGTAAGCTTCATTTCTTTGTAATTTTTAGAAAGCATTTGAGACATTTTAATTTTTTGGGTTTTGTGGATGGGAATAGTTTGTTTGCCAGTAAATCTGAGAGAAATTCAGTGAATTCTTTTTTGTTATGATGAAAATTAGGGGTTTCATTCTCTATATAGAAGATCTATAAGGCTAAGGCAGTGGGCAGTGGGTAGTGGGGACCTAACCCTTCAGCCTAGACCTTTTTAAAGTGCTTTGGTAAAAGATTGCAACTATGGTTAAAGTGCTTTTTTTTTATATGATGAAGGGTATGGGTTGAGGTTAAATGAGCTGACCCAACTTGTTTGGGTCTGAGAGTTCAGTTTTTTTCTTTTCACCCTTCCCTAGGAGCTCCGACCTTTTGGTTCCTTGGTGAGTCGAATCCGCAACCTTAAGATTGGAGGTGGAGGGTGCTTACCATCTAGGCCACCCCTCTTGTCGAGAGATAGTTGTTTGATTAAAGTGCTTTTATTTGATATGATGAAGGGTATGAATTGAGCTTAAATGAAGCTATGAGGATTCAATTAGCCGACCTTAACTTGTTTGGGACTGAGAGGTAGTTTTTTTTTTTCACCCCATGTCTAGGAGCTCCCGCCTTTTGCTCCGTTGGTGACGCAATGCTCTAACCTTAAGGTTGGAGTTGGAGGGTGTTTCCCATCTGAGCAATCCCCACTTGTCGAGAGGTAGTTACTAACTTATTATATTGGTTACAGTGCTGTTAGGACTATGAACAAAAGCGTTTGTCCAACACTTGCACTAAATTAAGTTCAAGCTGTTCTTTATAAATTGGTGTTCTTTTGATTTCTCATTAGTAACAATTGCTATGGTATTTGTTTAACTTCTCCACAGGATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATC</genome_strand>
        <mrna_strand>TGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302896" ref_strand="+" ref_description="SGN-E302896 [cLEW-26-A18]">
      <seq>agctggtgaactttttggaacgaggcccggtgtatgctggaaatgcttctgttgtcttctggatatctatgatgtgctaaacggttagataatatttcacgatgaggccttctcagaaccctgaggaaatcaacgagttcaacaaattctataaccaacccatagagtatcaagaatcctatttcctgccttccgttaacaatccgaacaacaaccaatcgttctatgctgatgtctctgccttaaaacccgcccaacactgttatgttgaatcatccgcgggaaattctagtgaacttgtttctgattcacctcctattgttaatttcaaccccatgatgaaccaaggttctgattcgtgtcgttcagacatgcatcattctcctgatgatacatttcagtcgtcgggtaacagttcgtgctacactagtgatgttactgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24547" stop="23501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24247" g_stop="23801" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E302896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24247" e_stop="23801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGA</genome_strand>
        <mrna_strand>AGCTGGTGAACTTTTTGGAACGAGGCCCGGTGTATGCTGGAAATGCTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721672" ref_strand="+" ref_description="SGN-E721672 [FC14DD03]">
      <seq>ggagtatccgccgccggctagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattccccccccaagggggccccctttttttttttttggggccccaaaaaaagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30463" stop="1421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30163" g_stop="29959" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29168" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="504" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29167" i_stop="25886" i_length="3282">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25885" g_stop="25803" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="587" r_length="83" r_score="0.530"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25802" i_stop="25521" i_length="282">
            <donor d_prob="0.585" d_score="0.42"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25520" g_stop="25489" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="619" r_length="32" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E721672" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30163" e_stop="29959"/>
          <exon e_start="29466" e_stop="29168"/>
          <exon e_start="25885" e_stop="25803"/>
          <exon e_start="25520" e_stop="25489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACATGTTTGGGACTCAAGATTCGCTGTTGTTATTTTTTAATCAAGTGGATCATATGCTTCACATTCTTTATGCCACCAATTGATCATAGACTGATAGAAGTATATTGGAGTTTCATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTATTATCAGTGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCATCTCCATAGTAACTTATCGTCACAAGTAAAACAGAAGCTTTTGTAGGGAATCAGTTAATTAAGAAGCAGGCATGGTTCTGGAGGAGGGTAGCATTGCAAGTAATGACTTGCTTGAAGTTGTTGATGTTAACTCTTTGCAATGCAGGCTGGATATAGCAGCAAGTGCTTACCCTTGTTGTCCCTTTTGTAGTTTCCGGGGATATTATGAAAATAGTGGGCATTTCTCACTTCTATATCACTACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACTGACTTATTACGGTTACTATGAATCATGGCTTCTCCTGACTTGCTAATAATGATGAGTTGACTATGCATTTTTTTAGTGTGATGATGTTATGAAATGAACTTAAATGAGAGAATTGAGATTCATATAGCCGACCCCAACTTGTTTGGGACTTGGGCGTAGTAGTTGTTAAATTTGAATTAATTAGATCTTATACTTCACATTCTTTATGCCACCAATTGATCATAGAAGTATAACGGAGTTGAATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTAAATGAAGTGCAAGGATTCATATAGCTGACCCCAACTTGTTTGGGATTGAGCATAGTTGTTGTTGTGTTTTCTTTTCTGAAAGAGAGGGATAGGATGGGAACAAGGTGGAATCCTATCAAGCAGGTTCACTTGAGTTATGCTAGTAATATCGGTCTTTTGATTCTGATTCTTACTGTCATACCCTTACTTAGCTTCTTGAAGCTGAAACATTCAATTTGTTTCATGATTAGATATACCCTAAGTTTAAAACATTTTCTCCTATAAAGCCGCAACTTAGCTACAAATTATTTTATTTTCTAGGAAAGTAACATTCCTGTGAAAGTTTCTTTTTAGATGGGGGGAAATGCAAATAGAGAATGCCCTAAGTTTACGCATTTCCTCCCATAAAGCCGCAACTTAGCTATAAATTATTTTATTTTCCAGGAAAGTAACATTCCTGTGAAAGTTTCTTTTTATATGTGGGGAAAATGCAAATAGAGAATATGAATGACAACAGAAATGATATCATGTGCAAGCTGTAAAAATACTTTTCATACTTAGCTTTGTGATGACAGACAAGCTAAATTTGATAAGGCAGTTGTAGAATTTCAAACAAGCAATAAATCTGAACCTAGAGGCTATGACACTGAAAAACTCTTTGTTTGCATAGTAACTCATTTCACAAGTAAAAAACATAGCTTCATGTTTCTGGAGGACGGGAGCATTGCAAGTGATGACTTGCTTGAAGTTCTTGATGTCAACTTTTTCAATGCAGATTGTATACAGTAGCAAGTGCTTACCCTTGTCGAAAATGTTATCAAGCAACAAATTACAGGATGTCCTAAGTATTCAACTAGATGCTTCTTTTGTTGTTCGCATACCTCCAGAAATGTGTTTGTTGAACAGGAGACGATGTTGTTAACTCTTTCAATGCAGGTTGGATATTGTAACAGATGCTTATCATTGTCGAGAATGATGTCAACCAACAAAGGAGAGGAAGTCTCAATTATTCAACTAGATGTTTCATCTTTATATTGTTGTTGAAGTTTTGTTGTTGCATTCTGGTAACTTTTACTTCTAGAAATGTGTTTGTTGAATAGGGATCGATGTGTTGCTCTCGTTATCTGGTTGCTTTATTGGCCTTCTTTAGTTACATGTTGCATCTGTATGAGCTGCATTTAACTGTTTTTGTTGGCTCTGTGTGGCTGTGGAAGGCCTTCGCGGCTAAACATTACATTGTGTTTATGATCAAACCTATCGTTCAGAAAGTCCTTAAGAACGAGACAGTAATTTCCTTGAAACTACAGTGAAAATGCCTCGTTAAGATTATACAACACCCAAGAAGACTCTTTTACCTTAGGTGTGTGATGAGAGTGTAACATTTGGAGAGTGCAAGTGAAGAACGCAAGCACTCATGATTAACTGGAGTGTGACATTAAGAAAAGGAATGAATCTAACTTTGATGCCACGAAGATAAATGAAATTTGAGTCTAGCTCTACTTCAAATATTAGCTTACGAGGCTCTCGTATATGTAATTATTTGTATAGTCATTGTCTAATAAAATGACTGAATAGTGATAGGCGCAATTGAGTACATCAAGAGAATTATAACTACCGTTAATCAAGGATTAATGAACGCTTAAACATTATACCAATTGAAATTTATTCACTAATCACTTTTCTCATGTTTCAAGCTTGAAGTACCTTAATAATTTGTCCACGTGTAAGTACTCTCCCCATTAATATTGACAAATAGACTTTATATTATAAACAATAATAATATATAGTCTTTTATCTTAAAAAGGACTACAACTTTTTGTTGATAATTGTAATGAGAAAAATGTCATTTAAAAAAAATCAAATTTTAAGATATGTACTAGAAAAGAATTTAAGATGGTCAATTATAGATGACAAAAGGATGTTGTGTAACGTAGAATGTTATTTAATGAAGTAGATGGCGTTTATTTTATTTGCCAGTAATAATAAATTCAATATTTAGATATTGGGTTATCCGTAACAGTTACAAGGCTCCAACAATTTATATTTATGTTTATTTATTTTTAATCCAAAATATATTAATTTGATTATTCATATTCCCATTTCCAAAATTTGAAATTAAAACGCTAATTAAGTACGTAATAGTTCACCCACATATTCTACAATACCAAAAGATATTATAAAGCATTATCAACTTGTAACATCTTAGAAAATTTCAAAATTTGATCTAACATCTCCTCACTAAGTTTTTAATTCGTTTAAAGAAAAGATCAGATCTTAATTTAAGGTAACAAGAACATATTTACAAATACTTTTATATCAATAAAAATTTATCTTATACAATATAAAATAAAAAAATGTTAATTATAAAAAAGTCATTTTTTCAAAATAAAAATTAATTAAAAAAGAACTACAATATGAAGTCAAATAGACTATTATGATTGTACTCCCACCAAAAAGAATTAATGGTGACTAATAAAATATCTTCCCAACCTAAGTCGAGGACAAAAATTTCAGCTTCAACTATTTTTTTTTTCCTGAATTTTATTACAATGTTGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAGGTATGCTTTCTTTCACTGTTTTTTTTTTTTGATAATCTGAAGATATGGGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCTAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCCCCCCCAAGGGGGCCCCCTT..........................................................................................................................................................................................................................................................................................TTTTTTTTTTTGGGGCCCCAAAAAAAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722488" ref_strand="+" ref_description="SGN-E722488 [FC17BF12]">
      <seq>ggcggccaaatcggccgaattgatcgtaaaattcaacccgagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgatttcttgtgttgcgatgaatcatgtattattgttacttgctaataatgatgtgttgactatgcattatttagtatgataatgttttgaaatcagcttaaatgagagaattgagatttatgtagccnannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30480" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30180" g_stop="29959" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="243" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29033" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="677" r_length="434" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29032" i_stop="28882" i_length="151">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.36"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28881" g_stop="28807" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="752" r_length="75" r_score="0.413"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E722488" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30180" e_stop="29959"/>
          <exon e_start="29466" e_stop="29033"/>
          <exon e_start="28881" e_stop="28807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACATGTTTGGGACTCAAGATTCGCTGTTGTTATTTTTTAATCAAGTGGATCATATGCTTCACATTCTTTATGCCACCAATTGATCATAGACTGATAGAAGTATATTGGAGTTTCATTCTCTTCTTTTGGCTTGTCCTGTGTGTTCTTATTATCAGTGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCA</genome_strand>
        <mrna_strand>GATCGTAAAATTCAACCCGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCNANNN.......................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721274" ref_strand="+" ref_description="SGN-E721274 [FC13BC01]">
      <seq>ggccaaatcggccgaattggatcgtaaaattcaactggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30480" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30200" g_stop="29959" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29181" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="527" r_length="286" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29180" i_stop="29069" i_length="112">
            <donor d_prob="0.614" d_score="0.82"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29068" g_stop="29033" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="563" r_length="36" r_score="0.389"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E721274" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30200" e_stop="29959"/>
          <exon e_start="29466" e_stop="29181"/>
          <exon e_start="29068" e_stop="29033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAACTTTGCATTTTCCGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT</genome_strand>
        <mrna_strand>GGCCAAA-TCGGCCGAATTGGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAAAAAAAAAAAA................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541646" ref_strand="+" ref_description="SGN-E541646 [TUS-62-I19](-)">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30463" stop="28863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30163" g_stop="29959" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29167" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29068" g_stop="29055" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E541646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30163" e_stop="29959"/>
          <exon e_start="29466" e_stop="29167"/>
          <exon e_start="29068" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548584" ref_strand="+" ref_description="SGN-E548584 [TUS-62-I19]">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30463" stop="28863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30163" g_stop="29959" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29167" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29068" g_stop="29055" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E548584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30163" e_stop="29959"/>
          <exon e_start="29466" e_stop="29167"/>
          <exon e_start="29068" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299400" ref_strand="+" ref_description="SGN-E299400 [cLET-43-E24]">
      <seq>gagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30462" stop="28863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30162" g_stop="29959" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29167" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="504" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29068" g_stop="29055" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="518" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E299400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30162" e_stop="29959"/>
          <exon e_start="29466" e_stop="29167"/>
          <exon e_start="29068" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711535" ref_strand="+" ref_description="SGN-E711535 [FB02BB01]">
      <seq>agtcccttaaagaagagcagctaagaaggaagatgaatactgatatcccagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgatttcttgtgttgcgatgaatcatgtattattgttacttgctaataatgatgtgttgactatgcattatttagtatgataatgttttgaaatcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30435" stop="28769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30144" g_stop="29959" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29059" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="594" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E711535" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30144" e_stop="29959"/>
          <exon e_start="29466" e_stop="29059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAG</genome_strand>
        <mrna_strand>AGTCCCTTAAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCCCAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714968" ref_strand="+" ref_description="SGN-E714968 [FB12DH01]">
      <seq>atactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30408" stop="28870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30108" g_stop="29959" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29170" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="447" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E714968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30108" e_stop="29959"/>
          <exon e_start="29466" e_stop="29170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTT</genome_strand>
        <mrna_strand>ATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720723" ref_strand="+" ref_description="SGN-E720723 [FC11CF08]">
      <seq>atcgaaacccaccgtttactaataccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattaaagggccaacgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcaaaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataaccagtctctggtttaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30363" stop="28872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30063" g_stop="29959" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29466" g_stop="29172" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="401" r_length="296" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E720723" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30063" e_stop="29959"/>
          <exon e_start="29466" e_stop="29172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGG-TTACCAAC</genome_strand>
        <mrna_strand>ATCGAAACCCACCGTTTACTAATACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAAAGGGCCAACGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAAAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAACCAGTCTCTGGTTTACCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370925" ref_strand="+" ref_description="SGN-E370925 [TUS-27-J11]">
      <seq>ggaatgctaaaactcctcggcttgaaaggaagaagtgaaccatatgtcactgaggatgaattgaagttgatgctgcgtggggcggagttaagtggcgcaattgaggaggaagagcaggatatgattgaaaatgtgttggagattaaagacactcatgtcacggaggtaatgacacctcttgttgatgttgttgcaatcgatgccagtgcaacgttagttgatttccatagtttgtgggtgacacatcagtactccagggtgcccgtttttgagcaacgcatagataatattgttggcattgcatatgccatggatctcctagattatgtacaaaagggagaactgctggaaagttctattgtgggagacattgcacatagacctgcatactttgttcccgattctatgtcagtgtggaaccttcttagagagttccgcatcagaaaggtacacatggctgttgctcttaatgaatatggaggaaccataggaattgtaacccttgaagatgtggtcgaggaaattgttggcgaaatctttgacgaaaatgattcataagaggaaatccacaaaatgactggctatattgtcatgcgggctgaaggaatatacgatgttgatgcacatacctccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50851" stop="45831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50551" g_stop="50517" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50516" i_stop="49426" i_length="1091">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49425" g_stop="49344" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49343" i_stop="47598" i_length="1746">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47597" g_stop="47458" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47457" i_stop="47371" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47370" g_stop="47292" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="336" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47291" i_stop="47184" i_length="108">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47183" g_stop="47120" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="400" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47119" i_stop="46651" i_length="469">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46650" g_stop="46559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="492" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46558" i_stop="46425" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46424" g_stop="46359" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="558" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46358" i_stop="46211" i_length="148">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46210" g_stop="46131" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="637" r_length="79" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E370925" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50551" e_stop="50517"/>
          <exon e_start="49425" e_stop="49344"/>
          <exon e_start="47597" e_stop="47458"/>
          <exon e_start="47370" e_stop="47292"/>
          <exon e_start="47183" e_stop="47120"/>
          <exon e_start="46650" e_stop="46559"/>
          <exon e_start="46424" e_stop="46359"/>
          <exon e_start="46210" e_stop="46131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGGTAGGGTGATCATAAATCAAGTCTTGCTATTTTTCATGAGCTCTGCCTCACAGTGTTAATCTTTTTTACTATTCTTTCAGTTGGAATATGTATATCATAATTTATATTTTTGTGAGCATATTTACGAAACACACTCTTATAATATTTCTAATCGATCATGTAATTCTGAATATGGCAAGTTCACATGCATGTCTTATTTGAAAGGCTATCTACATTATACATGCTTATCCTTAGAAATCATTGTGAGCAATCTGCTGTTTTTTTTTTAATTACATAAATGCATTATTGTCAAAAGATACATGAAAAGCATAAGGTTTTCTCTCCACATAATTTAGATTTCCAAGGGCCCGTTTAGACATGATTTGATGATTTGAAATTGAAATTTTGCTTGGACATGTCATTTGGGTTTCTTAAGTTGTATTTTTTCTCATAAACATAACGAGAACCCAACAATTTGTGGAAATTATCTTGGGTAATCCTCTCCCCATGAGCTAACTTTAGGGGTTGAGTTAGACCCAAAATTCATTTCTTATCGTGAATTAGAGTCGATGTGAGCCCCCTGTTAGTTTTCACGCCCATGGACCAGATAGAGTCGGGCAGATGGGATGGGGGTGGGGGTGATGGAATGAATCCCACATCAAAGGTGAACGAATTGAATTGGGGTCTCATATGGTCAGTGCAATCTTCCTCTTTGAGCAGCTTTTGGGTTGAGTAAAATAAACTGAAATCCTACTTTTTCGAGCCCCAAATCCTATGGCCAAACAACTATTAAGCGTTCTCATCCATAATAACTTGTAGAAAAGTTAAAACTATGTTTATAAATACAATATGTGAAAAGTCTTGGGGTCTCACATTGGTTGAGGGTATGGGCAATAGTCTCAGTCCAAATATTTTATTTTGATAAAATATATATTATTAGAAAAGGAACCAGTACTCTTGGTACTGAAATTACAAACAAGCTGACAGAAGTTAGTTGGATCCTCCTTCACTTTTGTCTCTAACCATTCTAAATCCAGCATTGATTTTACATCATTCTCATTTGCCAAAACTTTAAGTTGCGTCACTAAATTTATATTCATTTTGGTATCTAGTGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAGGTGAGTTCATGTGTTTTCTGGGTTTCTGTTTTTTATGCTTGAACCTCAACTGTTACCAAATATGAACCAGTGAAGCACATGCATATTCTAATCATACATAAGCTTGTCTAGTTCACATAGAATTTGTTGTCCATTAGAATAGCCTTCATGTATGTGACCATTGTACCAAATGCAGCATCTTGAGATGTGTTTATCATGTCCATTTGAATGAGCACTATTTTAGCACTCTCTGTGTTTTGTTCTTATCTTGCATGTTATTATTGGAGATTCATGGTGACATAGTTGGAAGTCGATGGAGCCAGTGTTATCAAAGGCGAAAAATGCAAAAAAACAAAACTAAGGTCTATTGGTGCTTTGAGCACAAATAAAGCATGGACCTTGAAGAAGAAAGAAGTGAGTGGAAAAAAATACAAATATGTTTGCATGGTCCAAGACTAATAATTGTAAGCATGAATAACAAATCTAAGAACAAAGAAATTGAAAAATGTTTACGACGAAGTGAAATATCACTTGTGTAGTATCAGCTCTTCAGGGTTACACGAATTGTCAAGGAGAAGTGCCTTAGATCCTTGATGTTGAGACTGAAGCACAGGTAAAGCGTGGCTGACCGCACTTTAGGCGCGCTTTGACAACACTGAATGTAGCTACATACAAGTGTATTATTTTACTCTCTTTAAAAGACAACAAAATATATGACCTAAACATTAATGAGAGAGTTATGCTAATGATTTTTTCTTGGGAAGAACTGTCAAACAAACATAACATCCAAAACATGAAGAAATGATTGACAAAAAATTTCACCCTGCTTCTTCTATGCACCACCTTACTCATGCCCTCCAATGTTACATCTGCTGTATAATTGGTGCTGAAGCCAGTGCTTTGTGCCTTGGCTCGTCTTCTCTGGAAGAGGAAGGCTTTGTTCGATTTTGCCTTGACATGCATCTTCAGCCTACCACATTGTTTCCCTTGGCCAAAAAAATGACTTTGTGGTTTAAGACACAGCTGCCACCTTTTACAGGAATTTAGCATGCCATCTTTGATGGATTTTTTTTGGAGCTTAAAAACAGTTGGATTAAGCAGTTTTGGTTTAAATAAGCCAAAAATGCTTAAAAGTTGATTTGACCAGCTTTGAATATATTTCTCTGATTTTTCTTACTTTGTTGATTTCCATGCAGAAGTAGGTATCTTTTGTAACTTACTCGTGCGTTGGTTTGCACTTGTAGTATTTTGTTGTACTATCAGTTTTATCATCTTTCCCTTTACAAATTAATTCTCATTCTTTTAGACACAACTATGGGAACACAATCTATCTCAAATAAATAATACGTTGATTCCTGCATAACTTATGCAAGTATTATTTATGAGGAAAACAAAAAGGAGCAACCAAATGTTGATTTTATGACTTTCTGTGAGACTAAATCTCCTCAAATCTTAACCAAACACTATCATCTTTTGCTTGCTTTTATGGGGAGATAATATCTCCTAAAATAAAGCCTGACCCATTAATGTCTGTCCTCTTGCAGGACATGGCTGAAAATGTGTTGTCTTGCAAGTGACATGAGTTCTGCTGTAATTTTTTTAATTTTATTTTGGTTTGGTAATGACAGTGACATGAGTTGTGCTTAAATGGAGACGTGAGGATTCATATAGCCAATCCCAACTTGTTTGGGACTGGGGCAGAGCAATTGATATATATCTCCTAAAACTTAATTCAGATGAACCTTCTATGGCTCTGTTTTCTTGCAGGATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAGGTCTGATAGACTTTTAATTGCTTGTTTTTGCATAGAGAAGAAGTTTCCTTCAAAAGGTGCTAAAAGAGTTTGGCTATGAATTTTCAGGGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGTTTAGCATCCACAACTTCAGCCAGTCTCTTTCAAAATTATCGTGGTGTCATTTCTAATTGAACACATAAATTTCATAGCATGCTGAAAATTCTCTTTAATTTTGAAGGGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCGGTAATTTACATTTCTTCCTGATGTTGACTGATGTATAAATAAGAAATTGTAGTTCTATGTCACCTAAACCATGGATCTGCAAAGTCAATAATTTAAATTACTGATATAAGTTGCTGATCAGTAGGTATTTTAAGTACCACTTCATATCCTTATCAGAGACGTCATGTACTGTCTACCATAACTAAATCAACAAATAGATGTACATACTTTTTAGTATAATTAACAATACCGAAGCCACTTTGCTGACTGTAGTACTGCCTTTCAGATTCTCACACTGTTGAGATGTGATTTATTCCTATTTAACCAGCTGCCATCGGCGGGAATCATTCTTATTTCCTAGAATCTGTCTCCCTTAAAACATTATGATTTTATGCTTTATGCTTATAAAATGCATAAACATTGCTCGTGTTTTCTTTCCACTCACAATAGTACCCAAGGAGGCAAACAAAGTAATCTTGTAACAATGCAGATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGAGTAAGTTTTCTCTCTCATCGTTTCTGTTTCTTGGTTGTAGTGCTTTGTTAATTCCATCAAAATTTCTTATCCACTGTGTGTATCTATCATTTAATTATCTATAACAATGTCTTCACATTATCTCTATGAAACAGATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAAGTAAGACTTATGAGTCCCTCTTTCCACTTCTCTGAACAGCTAGTTATTTGTAGGTTCATAGTTACCTCTGATGGATACCCCTCTTCAGTTATAGAATACATAGATATTTAGTATGTGGAAGTATATGTATTTTCTTGTTGCGTGACAGGAGGAAATCCAAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</genome_strand>
        <mrna_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCACGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG.......................................................................................GGTGCCCGTTTTTGAGCAACGCATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG............................................................................................................GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAGACCTGCATACTTTGTTCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGCTCTTAATGAATATGGAGGAACCATAGGA......................................................................................................................................ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCATAA....................................................................................................................................................GAGGAAATCC-ACAAAATGACTGGCTATATTGTCATGCGGGCTGAAGGAATATACGATGTTGATGCACATACCTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271173" ref_strand="+" ref_description="SGN-E271173 [cLEM-5-C13]">
      <seq>ggaatgctaaaactcctcggcttgaaaggaagaagtgaaccatatgtcactgaggatgaattgaagttgatgctgcgtggggcggagttaagtggcgcaattgaggaggaagagcaggatatgattgaaaatgtgttggagattaaagacactcatgtcagggaggtaatgacacctcttgttgatgttgttgcaatcgatgccagtgcaacgttagttgatttccatagtttgtgggtgacacatcagtactccagggtgcccgtttttgagcaacgtatagataatattgttggcattgcatatgccatggatctcctagattatgtacaaaagggagaactgctggaaagttctattgtgggagacattgcacataaacctgcatactttgttcccgattctatgtcagtgtggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50851" stop="46330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50551" g_stop="50517" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50516" i_stop="49426" i_length="1091">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49425" g_stop="49344" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49343" i_stop="47598" i_length="1746">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47597" g_stop="47458" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47457" i_stop="47371" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47370" g_stop="47292" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="336" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47291" i_stop="47184" i_length="108">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47183" g_stop="47120" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="400" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47119" i_stop="46651" i_length="469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46650" g_stop="46630" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="421" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E271173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50551" e_stop="50517"/>
          <exon e_start="49425" e_stop="49344"/>
          <exon e_start="47597" e_stop="47458"/>
          <exon e_start="47370" e_stop="47292"/>
          <exon e_start="47183" e_stop="47120"/>
          <exon e_start="46650" e_stop="46630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGGTAGGGTGATCATAAATCAAGTCTTGCTATTTTTCATGAGCTCTGCCTCACAGTGTTAATCTTTTTTACTATTCTTTCAGTTGGAATATGTATATCATAATTTATATTTTTGTGAGCATATTTACGAAACACACTCTTATAATATTTCTAATCGATCATGTAATTCTGAATATGGCAAGTTCACATGCATGTCTTATTTGAAAGGCTATCTACATTATACATGCTTATCCTTAGAAATCATTGTGAGCAATCTGCTGTTTTTTTTTTAATTACATAAATGCATTATTGTCAAAAGATACATGAAAAGCATAAGGTTTTCTCTCCACATAATTTAGATTTCCAAGGGCCCGTTTAGACATGATTTGATGATTTGAAATTGAAATTTTGCTTGGACATGTCATTTGGGTTTCTTAAGTTGTATTTTTTCTCATAAACATAACGAGAACCCAACAATTTGTGGAAATTATCTTGGGTAATCCTCTCCCCATGAGCTAACTTTAGGGGTTGAGTTAGACCCAAAATTCATTTCTTATCGTGAATTAGAGTCGATGTGAGCCCCCTGTTAGTTTTCACGCCCATGGACCAGATAGAGTCGGGCAGATGGGATGGGGGTGGGGGTGATGGAATGAATCCCACATCAAAGGTGAACGAATTGAATTGGGGTCTCATATGGTCAGTGCAATCTTCCTCTTTGAGCAGCTTTTGGGTTGAGTAAAATAAACTGAAATCCTACTTTTTCGAGCCCCAAATCCTATGGCCAAACAACTATTAAGCGTTCTCATCCATAATAACTTGTAGAAAAGTTAAAACTATGTTTATAAATACAATATGTGAAAAGTCTTGGGGTCTCACATTGGTTGAGGGTATGGGCAATAGTCTCAGTCCAAATATTTTATTTTGATAAAATATATATTATTAGAAAAGGAACCAGTACTCTTGGTACTGAAATTACAAACAAGCTGACAGAAGTTAGTTGGATCCTCCTTCACTTTTGTCTCTAACCATTCTAAATCCAGCATTGATTTTACATCATTCTCATTTGCCAAAACTTTAAGTTGCGTCACTAAATTTATATTCATTTTGGTATCTAGTGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAGGTGAGTTCATGTGTTTTCTGGGTTTCTGTTTTTTATGCTTGAACCTCAACTGTTACCAAATATGAACCAGTGAAGCACATGCATATTCTAATCATACATAAGCTTGTCTAGTTCACATAGAATTTGTTGTCCATTAGAATAGCCTTCATGTATGTGACCATTGTACCAAATGCAGCATCTTGAGATGTGTTTATCATGTCCATTTGAATGAGCACTATTTTAGCACTCTCTGTGTTTTGTTCTTATCTTGCATGTTATTATTGGAGATTCATGGTGACATAGTTGGAAGTCGATGGAGCCAGTGTTATCAAAGGCGAAAAATGCAAAAAAACAAAACTAAGGTCTATTGGTGCTTTGAGCACAAATAAAGCATGGACCTTGAAGAAGAAAGAAGTGAGTGGAAAAAAATACAAATATGTTTGCATGGTCCAAGACTAATAATTGTAAGCATGAATAACAAATCTAAGAACAAAGAAATTGAAAAATGTTTACGACGAAGTGAAATATCACTTGTGTAGTATCAGCTCTTCAGGGTTACACGAATTGTCAAGGAGAAGTGCCTTAGATCCTTGATGTTGAGACTGAAGCACAGGTAAAGCGTGGCTGACCGCACTTTAGGCGCGCTTTGACAACACTGAATGTAGCTACATACAAGTGTATTATTTTACTCTCTTTAAAAGACAACAAAATATATGACCTAAACATTAATGAGAGAGTTATGCTAATGATTTTTTCTTGGGAAGAACTGTCAAACAAACATAACATCCAAAACATGAAGAAATGATTGACAAAAAATTTCACCCTGCTTCTTCTATGCACCACCTTACTCATGCCCTCCAATGTTACATCTGCTGTATAATTGGTGCTGAAGCCAGTGCTTTGTGCCTTGGCTCGTCTTCTCTGGAAGAGGAAGGCTTTGTTCGATTTTGCCTTGACATGCATCTTCAGCCTACCACATTGTTTCCCTTGGCCAAAAAAATGACTTTGTGGTTTAAGACACAGCTGCCACCTTTTACAGGAATTTAGCATGCCATCTTTGATGGATTTTTTTTGGAGCTTAAAAACAGTTGGATTAAGCAGTTTTGGTTTAAATAAGCCAAAAATGCTTAAAAGTTGATTTGACCAGCTTTGAATATATTTCTCTGATTTTTCTTACTTTGTTGATTTCCATGCAGAAGTAGGTATCTTTTGTAACTTACTCGTGCGTTGGTTTGCACTTGTAGTATTTTGTTGTACTATCAGTTTTATCATCTTTCCCTTTACAAATTAATTCTCATTCTTTTAGACACAACTATGGGAACACAATCTATCTCAAATAAATAATACGTTGATTCCTGCATAACTTATGCAAGTATTATTTATGAGGAAAACAAAAAGGAGCAACCAAATGTTGATTTTATGACTTTCTGTGAGACTAAATCTCCTCAAATCTTAACCAAACACTATCATCTTTTGCTTGCTTTTATGGGGAGATAATATCTCCTAAAATAAAGCCTGACCCATTAATGTCTGTCCTCTTGCAGGACATGGCTGAAAATGTGTTGTCTTGCAAGTGACATGAGTTCTGCTGTAATTTTTTTAATTTTATTTTGGTTTGGTAATGACAGTGACATGAGTTGTGCTTAAATGGAGACGTGAGGATTCATATAGCCAATCCCAACTTGTTTGGGACTGGGGCAGAGCAATTGATATATATCTCCTAAAACTTAATTCAGATGAACCTTCTATGGCTCTGTTTTCTTGCAGGATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAGGTCTGATAGACTTTTAATTGCTTGTTTTTGCATAGAGAAGAAGTTTCCTTCAAAAGGTGCTAAAAGAGTTTGGCTATGAATTTTCAGGGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGTTTAGCATCCACAACTTCAGCCAGTCTCTTTCAAAATTATCGTGGTGTCATTTCTAATTGAACACATAAATTTCATAGCATGCTGAAAATTCTCTTTAATTTTGAAGGGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCGGTAATTTACATTTCTTCCTGATGTTGACTGATGTATAAATAAGAAATTGTAGTTCTATGTCACCTAAACCATGGATCTGCAAAGTCAATAATTTAAATTACTGATATAAGTTGCTGATCAGTAGGTATTTTAAGTACCACTTCATATCCTTATCAGAGACGTCATGTACTGTCTACCATAACTAAATCAACAAATAGATGTACATACTTTTTAGTATAATTAACAATACCGAAGCCACTTTGCTGACTGTAGTACTGCCTTTCAGATTCTCACACTGTTGAGATGTGATTTATTCCTATTTAACCAGCTGCCATCGGCGGGAATCATTCTTATTTCCTAGAATCTGTCTCCCTTAAAACATTATGATTTTATGCTTTATGCTTATAAAATGCATAAACATTGCTCGTGTTTTCTTTCCACTCACAATAGTACCCAAGGAGGCAAACAAAGTAATCTTGTAACAATGCAGATTCTATGTCAGTGTGGAACC</genome_strand>
        <mrna_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG.......................................................................................GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG............................................................................................................GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTCAGTGTGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378991" ref_strand="+" ref_description="SGN-E378991 [TUS-1-H10]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttcctttattgtaaagtagtanaactttttgtattgagttggaagtgaacttacnagtgtttngatttttctctacnagcaaaactgaaatactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55019" stop="53687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54719" g_stop="54621" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="53987" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="651" r_length="552" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E378991" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54719" e_stop="54621"/>
          <exon e_start="54538" e_stop="53987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCC-TTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTTATTGT-AAAGTAGTANAACTTTTTGTATTGAGTTGGAAGTGAACTTACNAGTGTTTNGATTTTTCTCTACNAGCAAAACTGAAATACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379181" ref_strand="+" ref_description="SGN-E379181 [TUS-1-H10](-)">
      <seq>caaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttccttattgtaaaagtagtaaaactgattgtattgagttggaagtgtccttacaantattagaattttctctacaagcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55020" stop="53700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54720" g_stop="54621" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="54000" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="638" r_length="538" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E379181" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54720" e_stop="54621"/>
          <exon e_start="54538" e_stop="54000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAAC</genome_strand>
        <mrna_strand>CAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTGATTGTATTGAGTTGGAAGTGTCCTTACAANTATTAGAA-TTTTCTCTACAAGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213980" ref_strand="-" ref_description="SGN-E213980 [cLEC-80-M18]">
      <seq>cgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttccttattgtaaaagtagtaaaactttttgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55104" stop="53748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54804" g_stop="54621" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="54048" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="675" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E213980" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213980" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54804" e_stop="54621"/>
          <exon e_start="54538" e_stop="54048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGA</genome_strand>
        <mrna_strand>CGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380067" ref_strand="+" ref_description="SGN-E380067 [TUS-3-N24](-)">
      <seq>agaatggagagaactggagcgtaggccaaaggcagctggtctgtcttggccgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgagaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgaatagttagttaagagtgctcggattttgttgacttattgtaaaagtagtaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55154" stop="53758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54854" g_stop="54621" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="54058" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="716" r_length="482" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E380067" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54854" e_stop="54621"/>
          <exon e_start="54538" e_stop="54058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTT-CCTTATTGTAAAAGTAGTAAAACTT</genome_strand>
        <mrna_strand>AGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGAGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGAATAGTTAGTTAAGAGTGCTCGGATTTTGTTGACTTATTGTAAAAGTAGTAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204270" ref_strand="+" ref_description="SGN-E204270 [cLEC-13-H2]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55019" stop="53852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54719" g_stop="54621" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="54152" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="486" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E204270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54719" e_stop="54621"/>
          <exon e_start="54538" e_stop="54152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTAT</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375381" ref_strand="+" ref_description="SGN-E375381 [TUS-15-F4]">
      <seq>aaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55019" stop="54039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54719" g_stop="54621" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54538" g_stop="54339" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="299" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E375381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54719" e_stop="54621"/>
          <exon e_start="54538" e_stop="54339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTT</genome_strand>
        <mrna_strand>AAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379805" ref_strand="+" ref_description="SGN-E379805 [TUS-3-N24]">
      <seq>catctcgtggagaggttgagttcaacaatcttcaggtccgatatgctccacacatgcctctcgtgttacgaggacttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcaactttaatacagacccttttccgcatagttgatcctgttgttggacaaataaagatagatggtaccaacatctccacaattggtctgcatgatctgcggtctagattgagtatcattccgcaggatccgactatgtttgagggaactgtacgcagcaacctagatccgctcgaagagcattcagatgatcaaatttgggaggcgctggacaaatgtcaactaggagacgaagttaggaagaaggaaggcaagctatattctacagtatctgagaatggagagaactggagcgtaggccaaaggcagctggtctgtcttggccgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctngaatatgacactccaggcagttattagagaacgaatcctcgntgtttgccaagctcgtggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55832" stop="54164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55532" g_stop="55498" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55497" i_stop="55409" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55408" g_stop="55103" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="341" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55102" i_stop="55007" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55006" g_stop="54943" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="405" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54942" i_stop="54861" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54860" g_stop="54621" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="645" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54538" g_stop="54464" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="720" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E379805" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55532" e_stop="55498"/>
          <exon e_start="55408" e_stop="55103"/>
          <exon e_start="55006" e_stop="54943"/>
          <exon e_start="54860" e_stop="54621"/>
          <exon e_start="54538" e_stop="54464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAGGTAACAGCTTAGTTTGCCTATTTCTAGAATTTTGGTTTCACATTGGAAAATGAAACTTTTATGTATTGAGAAACTTTATTCAATTTTATGTTTCAGGCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAGGTTAGAACCACATCATGTTCCGATGATTTCCACATTTAAAGCTGTGACACTTATAATGCTTATATTCTTTGGATTGCTGCAGTATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCT-GAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTG</genome_strand>
        <mrna_strand>CATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG.........................................................................................GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG................................................................................................GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG..................................................................................TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTNGAATATGACACTCCAGGC-AGTTATTAGAGAACGAATCCTCGNTGTTTGCCAAGCTCGTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209403" ref_strand="+" ref_description="SGN-E209403 [cLEC-53-D23]">
      <seq>ggccatctcgtggagaggttgagttcaacaatcttcaggtccgatatgctccacacatgcctctcgtgttacgaggacttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcaactttaatacagacccttttccgcatagttgatcctgttgttggacaaataaagatagatggtaccaacatctccacaattggtctgcatgatctgcggtctagattgagtatcattccgcaggatccgactatgtttgagggaactgtacgcagcaacctagatccgctcgaagagcattcagatgatcaaatttgggaggcgctggacaaatgtcaactaggagacgaagttaggaagaaagaaggcaagctatattctacagtatctgagaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55835" stop="54546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55535" g_stop="55498" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55497" i_stop="55409" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55408" g_stop="55103" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="344" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55102" i_stop="55007" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55006" g_stop="54943" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="408" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54942" i_stop="54861" i_length="82">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54860" g_stop="54846" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="423" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E209403" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55535" e_stop="55498"/>
          <exon e_start="55408" e_stop="55103"/>
          <exon e_start="55006" e_stop="54943"/>
          <exon e_start="54860" e_stop="54846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAGGTAACAGCTTAGTTTGCCTATTTCTAGAATTTTGGTTTCACATTGGAAAATGAAACTTTTATGTATTGAGAAACTTTATTCAATTTTATGTTTCAGGCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAGGTTAGAACCACATCATGTTCCGATGATTTCCACATTTAAAGCTGTGACACTTATAATGCTTATATTCTTTGGATTGCTGCAGTATCTGAGAATGGAG</genome_strand>
        <mrna_strand>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG.........................................................................................GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG................................................................................................GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAAGAAGGCAAGCTATATTCTACAG..................................................................................TATCTGAGAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206721" ref_strand="+" ref_description="SGN-E206721 [cLEC-31-I8]">
      <seq>atcattgcagtaatgtcacaagtcgcatggcagatcttcatagtctttatcccagtcattgcaatttgcatttggttggagcaatattacatccctgcagcacgagaactggcacgtctaaatgggacatgcaaagctccagtaatacagcattttgctgaaacaatttcaggatcaagcacaattcgaagtttcgatcaagaatctagattccaggatgcaagcatgagattaatagacaattattctcggcctaagtttcacacagctgctgcgatggagtggctttgcatgcgtttggatatgttatctctgattacttttgctttcgcgttgattttcttgatctctcttcctgttggaacaatcgatccaagtgttgctggcttagctgttacatatggacttaatctaaacgtactgcaagcttgggttgtatggaatctttgtatgatggaaaataaaattatttccgtcgaaagaatacttcagtatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="56591" stop="55290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56291" g_stop="56211" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56210" i_stop="56111" i_length="100">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56110" g_stop="55816" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="376" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55815" i_stop="55713" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55712" g_stop="55590" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="499" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E206721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56291" e_stop="56211"/>
          <exon e_start="56110" e_stop="55816"/>
          <exon e_start="55712" e_stop="55590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAGGTTGCTACTTTGCTTTTTTCTATTCTCTGAATTTTATTACTTTAGTGGCGTATGTGAACATGAATTATATAATTAAGTGGTGTGTTTTGTTTAATTGCAGCAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAAGTGAGTGCTCTATCTTCATCAGGTTTTCATTCCATCAAATTTGTTAAATAGTTCTAAAGAGTACAATCTCACCTATGTTTTCACCTTGTTCCTGCCCTTACAGGTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</genome_strand>
        <mrna_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG....................................................................................................CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA.......................................................................................................GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710850" ref_strand="+" ref_description="SGN-E710850 [FA57AA11]">
      <seq>ccataaaagaagagagaatatgaacttgtctcttcttcttgccgttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58127" stop="56839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57829" g_stop="57068" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E710850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57829" e_stop="57068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCATAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGCCGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709904" ref_strand="+" ref_description="SGN-E709904 [FA53CD10]">
      <seq>cgataaaaaaaaagaagagagaatatgaacttgtctcttcttcttgaagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaaaaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttaaatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccaaatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataaaacgagtcagggaattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58134" stop="56839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57834" g_stop="57083" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E709904" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57834" e_stop="57083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CGATAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGAAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAAAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAAATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAAATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAAACGAGTCAGGGAATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270929" ref_strand="+" ref_description="SGN-E270929 [cLEM-6-H18]">
      <seq>aaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57964" stop="56853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57664" g_stop="57153" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E270929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57664" e_stop="57153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</genome_strand>
        <mrna_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329265" ref_strand="+" ref_description="SGN-E329265 [cTOD-2-H2]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttcgttgctgggcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaagctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58114" stop="56896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57814" g_stop="57196" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E329265" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57814" e_stop="57196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCGTTGCTGGGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAAGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326870" ref_strand="+" ref_description="SGN-E326870 [cTOC-25-G16]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58114" stop="56905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57814" g_stop="57205" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E326870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57814" e_stop="57205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325377" ref_strand="+" ref_description="SGN-E325377 [cTOC-1-I7]">
      <seq>tcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58096" stop="56936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57796" g_stop="57236" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E325377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57796" e_stop="57236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</genome_strand>
        <mrna_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324027" ref_strand="+" ref_description="SGN-E324027 [cTOC-3-C9]">
      <seq>aaaaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58129" stop="56973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57829" g_stop="57273" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E324027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57829" e_stop="57273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</genome_strand>
        <mrna_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337233" ref_strand="+" ref_description="SGN-E337233 [cTOE-7-C12]">
      <seq>agaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58115" stop="56988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57815" g_stop="57288" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E337233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57815" e_stop="57288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</genome_strand>
        <mrna_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325882" ref_strand="+" ref_description="SGN-E325882 [cTOC-12-C9]">
      <seq>aaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58127" stop="57005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57827" g_stop="57305" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E325882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57827" e_stop="57305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</genome_strand>
        <mrna_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319323" ref_strand="+" ref_description="SGN-E319323 [cTOB-16-P12]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacaaagatggctgttactggtccgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58114" stop="57047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57814" g_stop="57347" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E319323" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57814" e_stop="57347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACAAAGATGGCTGTTACTGGTCCGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268379" ref_strand="+" ref_description="SGN-E268379 [cLEI-13-I16]">
      <seq>gtctgttcttcttgtaattatttctctttgctttgcgtctccttcactatcagtaggatgcaatccgtaagacaaaaaagtccttctacaaataaagaaagactgaggcaatccttaccatttagctttatgggatccaaacacagattgctgctactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttgcaagccaatatctccggccaaattccggcagccgccggagaccttccatatctcgaaacattggaatttcatcatgtgactaatctcaccggaacaatttcacctgcaattgcgaagctcacaaatgtcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatctgacgttgctcgagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58102" stop="57071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57802" g_stop="57371" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E268379" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57802" e_stop="57371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAA</genome_strand>
        <mrna_strand>GTCTGTTCTTCTTGTAATTATTTCTCTTTGCTTTGCGTCTCCTTCACTATCAGTAGGATGCAATCCGTAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTGAGGCAATCCTTACCATTTAGCTTTATGGGATCCAAACACAGATTGCTGCTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTGCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGCCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTGACTAATCTCACCGGAACAATTTCACCTGCAATTGCGAAGCTCACAAATGTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATCTGACGTTGCTCGAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365401" ref_strand="+" ref_description="SGN-E365401 [cLPT-2-G15]">
      <seq>taagttataatataatattgttcataaacaaaaaaacatgaatatgaatttgcctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccaaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgccctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaattccatcatgttactaatctcactggaacaattccacctgcaattgctaaactcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaatttcttagtcagctgaagaatttgacgttgctcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="58131" stop="57076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57862" g_stop="57376" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E365401" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57862" e_stop="57376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAG</genome_strand>
        <mrna_strand>TAAGTTATAATATAATATTGTTCATAAACAAAAA--------AACA-TGAATATGAATTTGCCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCAAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCCCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTCCATCATGTTACTAATCTCACTGGAACAATTCCACCTGCAATTGCTAAACTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTTCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352019" ref_strand="+" ref_description="SGN-E352019 [cTOS-13-I12]">
      <seq>caaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttattcgttaatgtattttttcttacacgcaccaactataataattgtgcctcgatccctagtaagttgggaatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64991" stop="66215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65291" g_stop="65918" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E352019" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65291" e_stop="65918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</genome_strand>
        <mrna_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349642" ref_strand="+" ref_description="SGN-E349642 [cTOS-3-A11]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64992" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65292" g_stop="65822" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="543"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E349642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65292" e_stop="65822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351517" ref_strand="+" ref_description="SGN-E351517 [cTOS-12-O1]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaaagttgacatttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64992" stop="66073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65292" g_stop="65773" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E351517" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65292" e_stop="65773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAAGTTGACA-TTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357041" ref_strand="+" ref_description="SGN-E357041 [cTOS-22-G20]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64995" stop="66125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65295" g_stop="65825" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="541"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E357041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65295" e_stop="65825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356545" ref_strand="+" ref_description="SGN-E356545 [cTOS-21-E2]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctatagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaatttgttcgcttcactttgtgaagtttgacattttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64995" stop="66073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65295" g_stop="65773" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E356545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65295" e_stop="65773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTATAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTTGTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351656" ref_strand="+" ref_description="SGN-E351656 [cTOS-8-I7]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaagggtcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggaatttaatgcgtatgctaaagaaatggtgggactaattaagaaaaaagaacatgtatttttacctgaatttgttttgaattggttcgcctcactttgtgaagattgacatttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64995" stop="66071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65295" g_stop="65771" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E351656" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65295" e_stop="65771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGGTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGAATTTAATGCGTATGCTAAAGAAATGGTGGGACTAATTAAGAAAAAAGAACATGTATTTTTACCTGAATTTGTTTTGAATTGGTTCGCCTCACTTTGTGAAGATTGACATTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354271" ref_strand="+" ref_description="SGN-E354271 [cTOS-16-L17]">
      <seq>tggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64996" stop="66140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65296" g_stop="65839" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="557"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E354271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65296" e_stop="65839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</genome_strand>
        <mrna_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352263" ref_strand="+" ref_description="SGN-E352263 [cTOS-13-H16]">
      <seq>gctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="64998" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65298" g_stop="65825" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E352263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65298" e_stop="65825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354135" ref_strand="+" ref_description="SGN-E354135 [cTOS-16-F16]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65000" stop="66134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65300" g_stop="65831" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E354135" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65300" e_stop="65831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349272" ref_strand="+" ref_description="SGN-E349272 [cTOS-2-D14]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65000" stop="66134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65300" g_stop="65831" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E349272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65300" e_stop="65831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213293" ref_strand="-" ref_description="SGN-E213293 [cLEC-71-G12]">
      <seq>tttttttgctttttgcactgattatcacagttcaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaactggagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65020" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65320" g_stop="65822" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="521"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E213293" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65320" e_stop="65822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTTCAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341926" ref_strand="+" ref_description="SGN-E341926 [cTOF-9-J13]">
      <seq>ttttttgccttttgcaccgactctcacagtacaaattgcaaccaataaatgcctgcagaaacaccagaagttacttgcaaggtcacaatcaatgaccttatgctatgtttaccctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttgggggttccggttnnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65021" stop="66139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65321" g_stop="65831" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="545"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E341926" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65321" e_stop="65831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAA-CAATAAATG-CTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTA-CCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TTTTTTGCCTTTTGCACCGACTCTCACAGTACAAATTGCAACCAATAAATGCCTGCAGAAACACCAGAAGTTACTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350476" ref_strand="+" ref_description="SGN-E350476 [cTOS-5-C5]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65046" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65346" g_stop="65823" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E350476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65346" e_stop="65823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353813" ref_strand="+" ref_description="SGN-E353813 [cTOS-10-I6]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgtttttgattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctgggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65046" stop="66096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65346" g_stop="65798" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E353813" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65346" e_stop="65798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTTGATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722721" ref_strand="+" ref_description="SGN-E722721 [FC18AD12]">
      <seq>gggcgattggcggccaatcggccgaattggcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgggcgtttgaaatttcgggtatttgaaaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65091" stop="92350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65400" g_stop="65834" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="469" r_length="435" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65835" i_stop="69161" i_length="3327">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.005" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69162" g_stop="69217" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="525" r_length="56" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E722721" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65400" e_stop="65834"/>
          <exon e_start="69162" e_stop="69217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAA</genome_strand>
        <mrna_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGGGCGTTTGAAATTTCGGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552293" ref_strand="+" ref_description="SGN-E552293 [cTSB-3-H16]">
      <seq>acaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65103" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65403" g_stop="65822" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E552293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65403" e_stop="65822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715121" ref_strand="+" ref_description="SGN-E715121 [FB13BF05]">
      <seq>aatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgaaatttctggtatttgaaaatttaaataaactttctttgagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65105" stop="66126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65405" g_stop="65825" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E715121" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65405" e_stop="65825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGAAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553151" ref_strand="-" ref_description="SGN-E553151 [cTSB-1-P15]">
      <seq>ctttttttttaaaaagggccccccaaattttatttaactcccctttagggggaaagggggccccccccccccccccaagtttttttttttttttttttttttttttttttttttttttttttttttttactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcggaggtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="92352" stop="65144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73342" g_stop="73328" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73327" i_stop="72786" i_length="542">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72785" g_stop="72763" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="36" r_length="22" r_score="0.652"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72762" i_stop="72060" i_length="703">
            <donor d_prob="0.333" d_score="0.00"/>
            <acceptor a_prob="0.678" a_score="0.36"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72059" g_stop="71996" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="100" r_length="64" r_score="0.469"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71995" i_stop="70103" i_length="1893">
            <donor d_prob="0.000" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70102" g_stop="70074" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="129" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70073" i_stop="65824" i_length="4250">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65823" g_stop="65444" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="509" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E553151" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73342" e_stop="73328"/>
          <exon e_start="72785" e_stop="72763"/>
          <exon e_start="72059" e_stop="71996"/>
          <exon e_start="70102" e_stop="70074"/>
          <exon e_start="65823" e_stop="65444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATTCTTAAAAGTAAACTAACAACTTACACTCATATTCTCTAAATATACAATATATGTTCTACTTCTTAATACTATAATATAAAGTGATCAATTTATAATTAAGATGAACATGTAGTGTCAACATCATCCATAATAAGCAAATAAACTTTAAATATCTTTAATGAAAGTTTGCACCACATTTGCCATACCAAGTGATTATGATTTATGATCCAAAGGCAAAAGTACTACCACTACTAGCTACTCTAAAAGGGGAAAAAAATGCTTACTATATATATGCCTTTACAAACTTCAATGATTCAAGTATTTATATAATATGTGAATGAAGAGTTCCATTGTAATTTTTTTTTGTTTACTATCCCGTCTTCGATATTCTGGAGTTTGCTTAAAGAAATTTCACTTTAAAAAATAAATATTTTTTATTAGAAAAAGATAAACTAATCAATTATTTAAATAGTCATCAAACTTATAGCTTTTTTATTATCTTAGCTATTTAATTTTTTTTTTATCATTATAAACTACTCGATTTATAGGTTGTTTTTTCAAAAAAATAAGTGTGATCCCAAAAATTGATCTTAGCTAGTGTAAGTTTCAAACTTCGGATTTGAATATAAAAAATTAATGAGAATTAAGAATAAAACAAAATAAAATAGAGTTGACCAATTATTATTCAACATTACCATGGATGCTCATCGTAATCCTTTTTTTAAAAAAAGTGTTTCATCTAACTTCTCTAGATAAAAATAATAAATAAGTTTTGAGAATTATTTTTTGTGGTTATTGAATAAGCAATGGTCGGTCAGAAGACTCAACTTTGTATTATTTTTTTAAAAATAAAAAATGAATATTGTTGACGGGTACAACGGTTGGTGAGTAGATTTTGCACAAAATATTATGAATTCATCACTTTATTAATCTAAACCATAGATATATAATATCACATAATATTTTAAAATATGATTATTATTAATGGATGGAGCATAAAGTTATATTCTAATTCTATCTAATTACGTGCATAGTATTTTGTACAAATGACATAGTGGGCACCAAGTCACTTATAAACATAAAATTAAAATACTAAAGATTATGCACCAATATCGACAAGTCCAGTTAAGATGTTTTTGTAAAAAAAAAAAAAAGAGAGAGAGGATATTTTAGTTCTAATAATAATTTATGTCTATTAGTACAAAACAAAATATTTGAAAAAATGCATGTGGACAATAGTTAAAATAAATTGGTGAACTCGAGACAAATCTAACGAATTTTTGTAAAATTTTGTAGTTTAATTAATCTATGGACTTGGAAACTGGACTAGATACACAAGTGATTTATTTGATTTTTTTTTAATTATATAAATTTTTATTAGTAAATATTGAATTTGTTTAATTTATTTATAAAAAAATAATTAAAAAATTTCTGACTCGATCATGATATTTTTGCAATTGGCAAGGTTGTTGGATTTAGGAAGTCGGAAACACTTGTCTCTTATGGATTAGCATATCTTAGTAGTTATTAGTGGTAAATATGTTCTTTATTCAATTTACAGTCAAACAAGAGTTTGAATCAAAGTAAATAATTAGTTATCTTAATCTCTATTTAATAAAAAAATGTTCTGAAACAAAACTCTTAGCTAGCGTTTGGCCATAGATTTTCAAATATTCTTGGCAAATATTATTTGAGTGAAAATTTGGGTGAAATTTCACCATGTGTTTGGCCATAAAATTTGGGAAATATATTTCACCTTTTTAGAAAAATATGATTTATACACACAAGTTTTAAAAACTATCAAAACTAACTAAAAGTTTGTATTACAAGTCAATTGAATGTTAGTTACAATAATAACAAATAATGTCCATGACACTGAAGCAATGTGGTAATTTGGAGTGAGTGCAACAAGAATTATTCTATACATCGTGAAGTAGATAAAGTACATGACTTTGTTACCTAGAGCCAATTTTTAATAATTTTCATCAACAATCATATCATTATTTAATATTCACTAAATATTTCACCACTATTTTGGTGTTCACGTAAAAAAATGATGTAATACAACGCAAGCAACTACTAGAGAGGGTGTTTTTGTAAAAAATAAAAGATTGAGGTAAAATTTTTATTTTTAAAATATCCCAAATAATGGTATTTGGCCCAAATACTAGAAAAAACTAGTATTTGGAAATTTGGGATATTTGCCAAAAATATTTGCCAAATAATGACAAATTGTATGGACAAACATTATTTTGCCAAATTTTTCCCAAATATTATTTGGAAAATTTATGGCCAAACGGGCCTTAAAATAGTCATTTTAGCATTGTCTTGAACCTTATTATATAATTCTCTATAAATAATAATAATAAATTTTTTTTTAGAAAAATCGATACCTTATGCTAAATATGTCACTAATTCTAATTAACAACACACTAGCTAGCAACGAATTAGCTAGTGATAAATTCTAATTACTATCTGAATTATAGTGAGCATATTATTATTATTATAAAGTAAAAGTATTGAAAGTATTTTAAGGATTTCAGATTCGAACCTTAGGTATGGAGAAAAATGATTAAAACCTTCATTTTTGAATAAGTCAAGCAATGTGCGACCTAAATTCAATTAGAGTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTTATCTCATATTATACATTAAATTCGAAAACCATAAAATCATATTATATGTTTATTAACTTAATTATAAGTAGTTACAATGACACTAAAATAAAAAAATGTCACAAAATTAATTTATTTTATAAGAAAGTTCCTAGGTGGGAACTAATAAGGCATATGGCCGCACATGGCCACGAATTAGCAAATTGGAGAGACGGCTCTCTAATAATTGAATAAAATTTACAAATTAAACTTTTAAATCATTATAATCGAAAAATAGTCATTGTTATCATGTTTTATTAGTAAAATTTAAAACTCTACGATATTAATTATTATTTTTTAAGAAAAAGACTGAAAAGTGACGTGAACAATATTTCTACATAATATATGTACGTTTTTGTGTATTTCTTTTTATTGAGTCCAAAGACTTGATCAAGATATATATATTATCACTAGCAAAGTAACAAATGTATTGTTGGATACAAAATAAGAATTAAATACAGATCGACAATTGCATAACGCGTATAACTTATATCTTGTTATTTTAGATATTTCATTTCTTATTATAAAAATCCTAAGAGAGTAATCAGATAAAATTAAATTTTTGTTTTTATTTTTGTTTTTGTTTTTAATCAAATATTCGATATTTATTTTAAATTTTTTGATTAACTTTTTAAATGCGTGCTTTCTGAAAGAAAATTTTCAAAATTGAAACTCAACTAAACTAAATTAAATAGGAAAGTCTCTTAAAAAGTCTACAAAAATTAAATATATGAAAGTTAAGTTTAAGAAAAATTTTATTATTATGAGGTCTCATTAACTAATTAAAAGTCTACTTTATTGTTTCTTTATGAAAATTATGAAACGAAATTCTTAAAGTGAAGTTGTCACTTTTTCGGTCAATCTCGCTAAACAAAAGAATCAACTGCTTCTTTTGTCCCTTTTAGCATGTTACAATTTAAATATAATAAATTTAATAAATTATAATATTAGGAGCTAAGTGATAAATTATCTTTTAATATTTTAATCTGAACAAATAAAAAATATATATATATATAGAGAGAGAGAGAATTGTGCATTAAATCCAATCCCCAATTTTGATCTTTCCAAATCCAAACCAAAAAAAAAAGGCCCAAAAATTTTTGAACATCAAGTTGCCGTTAGAATATATCACTAATATAATCGCACCGAATTGTAGTGAAATGAATAAAATTTTTCATTTTTAATAATAAATCTCAAGATTAAGTTTGAGCATTAAAAATATTTCAATAGAACACGTTATTTTTTTAAATAAGTCTTACATGATACAAATTTAAATTAGTGGAAACTCAAAACAGATATCAAATATCGAACTGAAACGAAAGAAAAGGTCATATCAACAGTACGCGTTTGTGTGGCCTTAAGAATTGTTTAAAAAAAAAAAGACGTTGTAGTTGTTTGCACGATGATGTAATTTATTACACATTCAATTTATGCCTTTTGCAACTTTTTTGTTATCTTGTCAATTACTTCCTAGTATTATTGTATCTCTTGTTTTTTTTTTCTATTGGTCAAATCATATTCACTATAATTTAATTACTACTATATAATAAATACTACCATATAATACCAATGAAGACTTGACTTCTTGATTTTGGAATATTCGTTCTAAAGTCAAGTTTTAAATGAACGTTTAAAATAGTAGACAAAATTTTCGCTTTTTTGGACGGCTATTTAGTCTATTGACATAAGAATTTTATTTGCTTAAATTGAAAATTCTATGAGAAAACGTTAGATGATATTCTGAATTTTTTTAAAATGTTAGACGATAATATAATGTTTTGTCGATCTCGAAGGTTATATACTGGAATTTTTTTTAAATAAGAATAAAATCTAAAGGGGTATAAAAGGAATATTTGCATAAATCAGCCAATAATATATGTTCGTATAAATATAAGGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTACTAATTACAAAAAATCTCTTAAATTTGTTGAGCCGTGATACTTTAGACTGTAGTGATACATGGTAATTTAAAACTGTTAAGAAAAAATAGGGGAGAAAAACGGTAAAGTTAATGTTGTTACTAAAACAGCTTAATTTGTGGTAACAGATCATTAATTTGCATTAAATCAGCACTTAATTGGATATTAATTTTAAAATTTGAAAATCAAAGATTATATCATCTATTTTGAATATGCTATTCAATTTACCTAAATATCAAAGATTATATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACTTACAAACATGTGGTAATTAAATATTGAAGTCGTGCTTTTGATTATAAATACTTTGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTAAATATAAAATTTTATAAATCTTATGCTACAGTAAGATACATAAATTTAAGAATCATTAGGTAACATAATGTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTATCTAATGTATCATGTACTTTTTAGTGTGTATCATTGGTTTGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTACTTTACAATGACTATAAATCATGTATGATGTGAATTTATATAATTTAACTTGTGTAATGCTTTTTTTGTTATGCTTTTCTTGAAATATACAGTAAATAACTTTACTTTTAAAAAATAATACCAATTCATATGAATATGCTATTCAATTACCTAAATATCATGTAAAATTTAAGGATTATAGGGTAACATATTGTACATGATACATACGGTTTAGCCAATGTATCAGTTATTTTTAGTGTGTGTTTGATATATATGTATCATTTCGTTTTGCCAAAATACTAACCCGAGACAAGGTAGGCTTAACAATAATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</genome_strand>
        <mrna_strand>CTTTT-TTTTTAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCCCCCAAATTTTAT-TTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCTTTAGGGGGAAAGGGGGCCCCCCCCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551630" ref_strand="+" ref_description="SGN-E551630 [cTSB-1-F20]">
      <seq>gaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatggggggggggggggggggccccctttcccccaataggggggtaaaaaaaatttcggggggggttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65144" stop="92350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65444" g_stop="65825" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65826" i_stop="67429" i_length="1604">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67430" g_stop="67446" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="399" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67447" i_stop="67521" i_length="75">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67522" g_stop="67549" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="427" r_length="28" r_score="0.786"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67550" i_stop="68340" i_length="791">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.333" a_score="0.40"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68341" g_stop="68390" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="475" r_length="48" r_score="0.400"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68391" i_stop="69602" i_length="1212">
            <donor d_prob="0.829" d_score="0.40"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69603" g_stop="69627" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="500" r_length="25" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69628" i_stop="69764" i_length="137">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69765" g_stop="69771" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="507" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E551630" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65444" e_stop="65825"/>
          <exon e_start="67430" e_stop="67446"/>
          <exon e_start="67522" e_stop="67549"/>
          <exon e_start="68341" e_stop="68390"/>
          <exon e_start="69603" e_stop="69627"/>
          <exon e_start="69765" e_stop="69771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAAGTTGCAAAAGGCATAAATTGAATGTGTAATAAATTACATCATCGTGCAAACAACTACAACGTCTTTTTTTTTTTAAACAATTCTTAAGGCCACACAAACGCGTACTGTTGATATGACCTTTTCTTTCGTTTCAGTTCGATATTTGATATCTGTTTTGAGTTTCCACTAATTTAAATTTGTATCATGTAAGACTTATTTAAAAAAATAACGTGTTCTATTGAAATATTTTTAATGCTCAAACTTAATCTTGAGATTTATTATTAAAAATGAAAAATTTTATTCATTTCACTACAATTCGGTGCGATTATATTAGTGATATATTCTAACGGCAACTTGATGTTCAAAAATTTTTGGGCCTTTTTTTTTTGGTTTGGATTTGGAAAGATCAAAATTGGGGATTGGATTTAATGCACAATTCTCTCTCTCTCTATATATATATATATTTTTTATTTGTTCAGATTAAAATATTAAAAGATAATTTATCACTTAGCTCCTAATATTATAATTTATTAAATTTATTATATTTAAATTGTAACATGCTAAAAGGGACAAA</genome_strand>
        <mrna_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA...........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGGGGGGGGGGGGGGGGCCC-CCTTTCCCCCAAT-AGGGGGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATTTCGGGGGGGGTTTTTT.........................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554989" ref_strand="+" ref_description="SGN-E554989 [cTSC-6-B10]">
      <seq>ccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaangggggggggggggggggcccccccccccccctttaagagaaaatataaaattccggggggggggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65154" stop="92350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65454" g_stop="65831" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65832" i_stop="67515" i_length="1684">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67516" g_stop="67549" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="412" r_length="34" r_score="0.735"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67550" i_stop="69161" i_length="1612">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.005" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69162" g_stop="69218" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="469" r_length="57" r_score="0.649"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69219" i_stop="69602" i_length="384">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69603" g_stop="69627" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="494" r_length="25" r_score="0.400"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69628" i_stop="70743" i_length="1116">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.638" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70744" g_stop="70776" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="527" r_length="33" r_score="0.424"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70777" i_stop="72966" i_length="2190">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.431" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72967" g_stop="72996" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="556" r_length="29" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E554989" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65454" e_stop="65831"/>
          <exon e_start="67516" e_stop="67549"/>
          <exon e_start="69162" e_stop="69218"/>
          <exon e_start="69603" e_stop="69627"/>
          <exon e_start="70744" e_stop="70776"/>
          <exon e_start="72967" e_stop="72996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGTATGTTGTATAGTGTGGAAACATCATGAAAAAGTACGTTGTATAGGTGATGCTTCATCGCAAATTGACTAATTTTATACGAACCGATAAGGCGATTACCGTGTGTATATCCTCTTTTATTCAAGCTGAAGATCGGTAATATGAGCCTTGTTTGTTGACATTGAATCGTCATTCAAATGGAAGCCCAACTCATCATGGGCCCAATGGGCTTTATGAGAAGTTGAAAACCCACTTTGAAAATTGATAAAACTATTAGAACATGTAGGAAAAATAACTTAAATACACAACTATAATTTTTATATTCTCCAATTTTTCCTACTTTTTTTAAATATTACATAATTTTCTTTTTTTTTATTTTATTGTAAGTTTTTAGATACATTACATTCTCTCTCTTATAATACACATTTACCCATTTTAATGCCTATTTTTTCTCCATTAAAACACTCAACCTCTTAAATCAGTTTTTTAATTTTAAATTTTATCCATTTAAACACTCAACTTTTTAATCAGCTTTTTGATTTTGAATTTTTAAATTTTTAAATTTAATTAATTTTAATTAAAAGACCAAATTTTGAAATTTTGAATTTCAAAATTTGAAAAATTTGAAAATTAAAAAAGTAAAAATATTAGGAAGCAGGACAACTTCCATTAACTTCTACCGTCTTCTTCTTACTCCATCAAGTTTCAGTTCTTTTTTTTTCCTTAATCATCTTCATTCATCTTAATCCATTACATTTTTTTCTTTTCTTCTTTTTATTCTTAATCCATCATCGTCTATTTCTTCCTAATCTGTAATAGTTTGAACCCAGCATCTTTTTATTATTAATCCATCATCAATTCGTATATTCTTCTCTTTTTTATTTTTGTTAATTGTTCTATTACATCATAGTAATGGATCCGTTAATTAATAGAAGGATATATGATTCCGACGATGAAAATTGGAAAGAAAATAGAAAAAAGTCTTTGCATGATTCTATGAATCTTCAGAAGGATTCAAACGAAAACTCTGGCGAAACATCGAATCAAAGGTTGTCAAAATACAACAAAAAAAGGAAAAAAGAAGCAACAAACATTATTGTTAAGCCTACCTTGTCTCGGGTTAGTATTTTGGCAAAACGAAATGATACATATATATCAAACACACACTAAAAATAACTGATACATTGGCTAAACCGTATGTATCATGTACAATATGTTACCCTATAATCCTTAAATTTTACATGATATTTAGGTAATTGAATAGCATATTCATATGAATTGGTATTATTTTTTAAAAGTAAAGTTATTTACTGTATATTTCAAGAAAAGCATAACAAAAAAAGCATTACACAAGTTAAATTATATAAATTCACATCATACATGATTTATAGTCATTGTAAAGTACACAATAACCTCAATAATATTTTTGTATTTTTTATCTAATGGAGATGTATCATTGTGCAAACCAATGATACACACTAAAAAGTACATGATACATTAGATAAACAATGTGTACCAAAAACACACAATAAAAGTACATGATACACTAGATAAACCATATGTATCATGTACATTATGTTACCTAATGATTCTTAAATTTATGTATCTTACTGTAGCATAAGATTTATAAAATTTTATATTTAAAACAAATATTGACACAAGTATATTTATCAACACCAATAATAACAAAGTATTTATAATCAAAAGCACGACTTCAATATTTAATTACCACATGTTTGTAAGTTTATTTATCTAAACACAAAGTGTTCAATTTGCAGTTGTAATGAAAACTGAAATTCATTAAAATGTTTACGTTATAAATTATTCTTGATATCATAGAAACATTACGACTAATTCACTTCTCTTTTGGGTAGAAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACAGTTTGTGTTCAAAATCTTTTCATTTGCATTCTTTCTTCTTCTTTTTCTTGGTCGTCCAGATGATATAATCTTTGATATTTAGGTAAATTGAATAGCATATTCAAAATAGATGATATAATCTTTGATTTTCAAATTTTAAAATTAATATCCAATTAAGTGCTGATTTAATGCAAATTAATGATCTGTTACCACAAATTAAGCTGTTTTAGTAACAACATTAACTTTACCGTTTTTCTCCCCTATTTTTTCTTAACAGTTTTAAATTACCATGTATCACTACAGTCTAAAGTATCACGGCTCAACAAATTTAAGAGATTTTTTGTAATTAGTAAACTTATCGGGACAGAATGTAATTATTGAATTACACTATGGGATTCCTTATATTTATACGAACATATATTATTGGCTGATTTATGCAAATATTCCTTTTATACCCCTTTAGATTTTATTCTTATTTAAAAAAAATTCCAGTATATAACCTTCGAGATCGACAAAACATTATATTATCGTCTAACATTTTAAAAAAATTCAGAATATCATCTAACGTTTTCTCATAGAATTTTCAATTTAAGCAAATAAAATTCTTATGTCAATAGACTAAATAGCCGTCCAAAAAAGCGAAAATTTTGTCTACTATTTTAAACGTTCATTTAAAACTTGACTTTAGAACGAATATTCCAAAATCAAGAAGTCAAGTCTTCATTGGTATTATATGGTAGTATTTATTATATAGTAGTAATTAAATTATAGTGAATATGATTTGACCAATAGAAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAAGTTGCAAAAGGCATAAATTGAATGTGTAATAAATTACATCATCGTGCAAACAACTACAACGTCTTTTTTTTTTTAAACAATTCTTAAGGCCACACAAACGCGTACTGTTGATATGACCTTTTCTTTCGTTTCAGTTCGATATTTGATATCTGTTTTGAGTTTCCACTAATTTAAATTTGTATCATGTAAGACTTATTTAAAAAAATAACGTGTTCTATTGAAATATTTTTAATGCTCAAACTTAATCTTGAGATTTATTATTAAAAATGAAAAATTTTATTCATTTCACTACAATTCGGTGCGATTATATTAGTGATATATTCTAACGGCAACTTGATGTTCAAAAATTTTTGGGCCTTTTTTTTTTGGTTTGGATTTGGAAAGATCAAAATTGGGGATTGGATTTAATGCACAATTCTCTCTCTCTCTATATATATATATATTTTTTATTTGTTCAGATTAAAATATTAAAAGATAATTTATCACTTAGCTCCTAATATTATAATTTATTAAATTTATTATATTTAAATTGTAACATGCTAAAAGGGACAAAAGAAGCAGTTGATTCTTTTGTTTAGCGAGATTGACCGAAAAAGTGACAACTTCACTTTAAGAATTTCGTTTCATAATTTTCATAAAGAAACAATAAAGTAGACTTTTAATTAGTTAATGAGACCTCATAATAATAAAATTTTTCTTAAACTTAACTTTCATATATTTAATTTTTGTAGACTTTTTAAGAGACTTTCCTATTTAATTTAGTTTAGTTGAGTTTCAATTTTGAAAATTTTCTTTCAGAAAGCACGCATTTAAAAAGTTAATCAAAAAATTTAAAATAAATATCGAATATTTGATTAAAAACAAAAACAAAAATAAAAACAAAAATTTAATTTTATCTGATTACTCTCTTAGGATTTTTATAATAAGAAATGAAATATCTAAAATAACAAGATATAAGTTATACGCGTTATGCAATTGTCGATCTGTATTTAATTCTTATTTTGTATCCAACAATACATTTGTTACTTTGCTAGTGATAATATATATATCTTGATCAAGTCTTTGGACTCAATAAAAAGAAATACACAAAAACGTACATATATTATGTAGAAATATTGTTCACGTCACTTTTCAGTCTTTTTCTTAAAAAATAATAATTAATATCGTAGAGTTTTAAATTTTACTAATAAAACATGATAACAATGACTATTTTTCGATTATAATGATTTAAAAGTTTAATTTGTAAATTTTATTCAATTATTAGAGAGCCGTCTCTCCAATTTGCTAATTCGTGGCCATGTGCGGCCATATGCCTTATTAGTTCCCACCTAGGAACTTTCTTATAAAATAAATTAATTTTGTGACATTTTTTTATTTTAGTGTCATTGTAACTACTTATAATTAAGTTAATAAACATATAATATGATTTTATGGTTTTCGAATTTAATGTATAATATGAGATAAGCTCTTGCATCATATTTTTATCGGGGTTTGGTATTTATATTGAAACTCTAATTGAATTTAGGTCGCACATTGCTTGACTTATTCAAAAATGAAGGTTTTAATCATTTTTCTCCATACCTAAGGTTCGAATCTGAAATCCTTAAAATACTTTCAATACTTTTACTTTATAATAATAATAATATGCTCACTATAATTCAGATAGTAATTAGAATTTATCACTAGCTAATTCGTTGCTAGCTAGTGTGTTGTTAATTAGAATTAGTGACATATTTAGCATAAGGTATCGATTTTTCTAAAAAAAAATTTATTATTATTATTTATAGAGAATTATATAATAAGGTTCAAGACAATGCTAAAATGACTATTTTAAGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGGCAAAATAATGTTTGTCCATACAATTTGTCATTATTTGGCAAATATTTTTGGCAAATATCCCAAATTTCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATACCATTATTTGGGATATTTTAAAAATAAAAATTTTACCTCAATCTTTTATTTTTTACAAAAACACCCTCTCTAGTAGTTGCTTGCGTTGTATTACATCATTTTTTTACGTGAACACCAAAATAGTGGTGAAATATTTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTAAAAATTGGCTCTAGGTAACAAAGTCATGTACTTTATCTACTTCACGATGTATAGAATAATTCTTGTTGCACTCACTCCAAATTACCACATTGCTTCAGTGTCATGGACATTATTTGTTATTATTGTAACTAACATTCAATTGACTTGTAATACAAACTTTTAGTTAGTTTTGATAGTTTTTAAAACTTGTGTGTATAAATCATATTTTTCTAAAAAGGTGAAATATATTTCCCAAATTTTATGGCCAAACACATGGTGAAATTTCACCCAAATTTTCACTCAAATAATATTTGCCAAGAATATTTGAAAATCTATGGCCAAACGCTAGCTAAGAGTTTTGTTTCAGAACATTTTTTTATTAAATAGAGATTAAGATAACTAATTATTTACTTTGATTCAAACTCTTGTTTGACTGTAAATTGAATAAAGAACATATTTACCACTAATAACTACTAAGATATGCTAATCCATAAGAGACAAGTGTTTCCGACTTCCTAAATCCAACAACCTTGCCAATTGCAAAAATATCATGATCGAGTCAGAAATTTTTTAATTATTTTTTTATAAATAAATTAAACAAATTCAATATTTACTAATAAAAATTTATATAATTAAAAAAAAATCAAATAAATCACTTGTGTATCTAGTCCAGTTTCCAAGTCCATAGATTAATTAAACTACAAAATTTTACAAAAATTCGTTAGATTTGTCTCGAGTTCACCAATTTATTTTAACTATTGTCCACATGCATTTTTTCAAATATTTTGTTTTGTACTAATAGACATAAATTATTATTAGAACTAAAATATCCTCTCTCTCTTTTTTTTTTTTTTACAAAAACATCTTAACTGGACTTGTCGATATTGGTGCATAATCTTTAGTATTTTAATTTTATGTTTATAAGTGACTTGGTGCCCACTATGTCATTTGTACAAAATACTATGCACGTAATTAGATAGAATTAGAATATAACTTTATGCTCCATCCATTAATAATAATCATATTTTAAAATATTATGTGATATTATATATCTATGGTTTAGATTAATAAAGTGATGAATTCATAATATTTTGTGCAAAATCTACTCACCAACCGTTGTACCCGTCAACAATATTCATTTTTTATTTTTAAAAAAATAATACAAAGTTGAGTCTTCTGACCGACCATTGCTTATTCAATAACCACAAAAAATAATTCTCAAAACTTATTTATTATTTTTATCTAGAGAAGTTAGATGAAACACTTTTTTTAAAAAAAGGATTACGATGAGCATCCATGGTAATGTTGAATAATAATTGGTCAACTCTATTTTATTTTGTTTTATTCTTAATTCTCATTAATTTTTTATATTCAAATCCGAAGTTTGAAACTTACACTAGCTAAGATCAATTTTTGGGATCACACTTATTTTTTTGAAAAAACAACCTATAAATCGAGTAGTTTATAATGATAAAAAAAAAATTAAATAGCTAAGATAATAAAAAAGCTATAAGTTTGATGACTATTTAAATAATTGATTAGTTTATCTTTTTCTAATAAAAAATATTTATTTTTTAAAGTGAAATTTCTTTAAGCAAACTCCAGAATATCGAAGACGGGATAGTAAACAAAAAA</genome_strand>
        <mrna_strand>CCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTTGTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAANGGGGGGGGGGGGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCCCCCCCCCCTTTAAGAGAAAATATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCGGGGGGGGGGT-TTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555084" ref_strand="-" ref_description="SGN-E555084 [cTSC-6-F7]">
      <seq>ttttttttttaaacccccccccccgaaaaaaatatcccccccccctggggaagggggggcccccccccccccccccccttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaccccaacaactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="92350" stop="65154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70728" g_stop="70681" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.521"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70680" i_stop="70532" i_length="149">
            <donor d_prob="0.000" d_score="0.52"/>
            <acceptor a_prob="0.575" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70531" g_stop="70504" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="76" r_length="28" r_score="0.357"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70503" i_stop="70106" i_length="398">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70105" g_stop="70075" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="107" r_length="31" r_score="0.806"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70074" i_stop="69189" i_length="886">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69188" g_stop="69160" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="136" r_length="29" r_score="0.724"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69159" i_stop="67558" i_length="1602">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67557" g_stop="67522" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="172" r_length="36" r_score="0.750"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67521" i_stop="65835" i_length="1687">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65834" g_stop="65454" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="553" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E555084" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70728" e_stop="70681"/>
          <exon e_start="70531" e_stop="70504"/>
          <exon e_start="70105" e_stop="70075"/>
          <exon e_start="69188" e_stop="69160"/>
          <exon e_start="67557" e_stop="67522"/>
          <exon e_start="65834" e_stop="65454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTTATCTCATATTATACATTAAATTCGAAAACCATAAAATCATATTATATGTTTATTAACTTAATTATAAGTAGTTACAATGACACTAAAATAAAAAAATGTCACAAAATTAATTTATTTTATAAGAAAGTTCCTAGGTGGGAACTAATAAGGCATATGGCCGCACATGGCCACGAATTAGCAAATTGGAGAGACGGCTCTCTAATAATTGAATAAAATTTACAAATTAAACTTTTAAATCATTATAATCGAAAAATAGTCATTGTTATCATGTTTTATTAGTAAAATTTAAAACTCTACGATATTAATTATTATTTTTTAAGAAAAAGACTGAAAAGTGACGTGAACAATATTTCTACATAATATATGTACGTTTTTGTGTATTTCTTTTTATTGAGTCCAAAGACTTGATCAAGATATATATATTATCACTAGCAAAGTAACAAATGTATTGTTGGATACAAAATAAGAATTAAATACAGATCGACAATTGCATAACGCGTATAACTTATATCTTGTTATTTTAGATATTTCATTTCTTATTATAAAAATCCTAAGAGAGTAATCAGATAAAATTAAATTTTTGTTTTTATTTTTGTTTTTGTTTTTAATCAAATATTCGATATTTATTTTAAATTTTTTGATTAACTTTTTAAATGCGTGCTTTCTGAAAGAAAATTTTCAAAATTGAAACTCAACTAAACTAAATTAAATAGGAAAGTCTCTTAAAAAGTCTACAAAAATTAAATATATGAAAGTTAAGTTTAAGAAAAATTTTATTATTATGAGGTCTCATTAACTAATTAAAAGTCTACTTTATTGTTTCTTTATGAAAATTATGAAACGAAATTCTTAAAGTGAAGTTGTCACTTTTTCGGTCAATCTCGCTAAACAAAAGAATCAACTGCTTCTTTTGTCCCTTTTAGCATGTTACAATTTAAATATAATAAATTTAATAAATTATAATATTAGGAGCTAAGTGATAAATTATCTTTTAATATTTTAATCTGAACAAATAAAAAATATATATATATATAGAGAGAGAGAGAATTGTGCATTAAATCCAATCCCCAATTTTGATCTTTCCAAATCCAAACCAAAAAAAAAAGGCCCAAAAATTTTTGAACATCAAGTTGCCGTTAGAATATATCACTAATATAATCGCACCGAATTGTAGTGAAATGAATAAAATTTTTCATTTTTAATAATAAATCTCAAGATTAAGTTTGAGCATTAAAAATATTTCAATAGAACACGTTATTTTTTTAAATAAGTCTTACATGATACAAATTTAAATTAGTGGAAACTCAAAACAGATATCAAATATCGAACTGAAACGAAAGAAAAGGTCATATCAACAGTACGCGTTTGTGTGGCCTTAAGAATTGTTTAAAAAAAAAAAGACGTTGTAGTTGTTTGCACGATGATGTAATTTATTACACATTCAATTTATGCCTTTTGCAACTTTTTTGTTATCTTGTCAATTACTTCCTAGTATTATTGTATCTCTTGTTTTTTTTTTCTATTGGTCAAATCATATTCACTATAATTTAATTACTACTATATAATAAATACTACCATATAATACCAATGAAGACTTGACTTCTTGATTTTGGAATATTCGTTCTAAAGTCAAGTTTTAAATGAACGTTTAAAATAGTAGACAAAATTTTCGCTTTTTTGGACGGCTATTTAGTCTATTGACATAAGAATTTTATTTGCTTAAATTGAAAATTCTATGAGAAAACGTTAGATGATATTCTGAATTTTTTTAAAATGTTAGACGATAATATAATGTTTTGTCGATCTCGAAGGTTATATACTGGAATTTTTTTTAAATAAGAATAAAATCTAAAGGGGTATAAAAGGAATATTTGCATAAATCAGCCAATAATATATGTTCGTATAAATATAAGGAATCCCATAGTGTAATTCAATAATTACATTCTGTCCCGATAAGTTTACTAATTACAAAAAATCTCTTAAATTTGTTGAGCCGTGATACTTTAGACTGTAGTGATACATGGTAATTTAAAACTGTTAAGAAAAAATAGGGGAGAAAAACGGTAAAGTTAATGTTGTTACTAAAACAGCTTAATTTGTGGTAACAGATCATTAATTTGCATTAAATCAGCACTTAATTGGATATTAATTTTAAAATTTGAAAATCAAAGATTATATCATCTATTTTGAATATGCTATTCAATTTACCTAAATATCAAAGATTATATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACTTACAAACATGTGGTAATTAAATATTGAAGTCGTGCTTTTGATTATAAATACTTTGTTATTATTGGTGTTGATAAATATACTTGTGTCAATATTTGTTTTAAATATAAAATTTTATAAATCTTATGCTACAGTAAGATACATAAATTTAAGAATCATTAGGTAACATAATGTACATGATACATATGGTTTATCTAGTGTATCATGTACTTTTATTGTGTGTTTTTGGTACACATTGTTTATCTAATGTATCATGTACTTTTTAGTGTGTATCATTGGTTTGCACAATGATACATCTCCATTAGATAAAAAATACAAAAATATTATTGAGGTTATTGTGTACTTTACAATGACTATAAATCATGTATGATGTGAATTTATATAATTTAACTTGTGTAATGCTTTTTTTGTTATGCTTTTCTTGAAATATACAGTAAATAACTTTACTTTTAAAAAATAATACCAATTCATATGAATATGCTATTCAATTACCTAAATATCATGTAAAATTTAAGGATTATAGGGTAACATATTGTACATGATACATACGGTTTAGCCAATGTATCAGTTATTTTTAGTGTGTGTTTGATATATATGTATCATTTCGTTTTGCCAAAATACTAACCCGAGACAAGGTAGGCTTAACAATAATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</genome_strand>
        <mrna_strand>TTTTTTTTTTAAACCCCCCCCCCCGAAAAAAATATCCCCCCCCCCTGG.....................................................................................................................................................GGAAGGGGGGGCCCCCCCCCCCCCCCCC..............................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAACAACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221814" ref_strand="+" ref_description="SGN-E221814 [cLEL-10-O23](-)">
      <seq>agtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65180" stop="66122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65480" g_stop="65822" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="361"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E221814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65480" e_stop="65822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722731" ref_strand="+" ref_description="SGN-E722731 [FC18AE12]">
      <seq>ttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttaatgcgtatgctagataagtgttgggactaattaagaaaaaaaagcttgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65229" stop="66067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65529" g_stop="65767" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E722731" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65529" e_stop="65767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</genome_strand>
        <mrna_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAATGCGTATGCTAGATAAGTGTTGGGACTAATTAAGAAAAAAAAGCTTGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353041" ref_strand="+" ref_description="SGN-E353041 [cTOS-14-D9]">
      <seq>ttttttttttttttttttttttttttttttttccaaagaaagtttatttaaattctcaaataccagaaattacaaacgcacataaaaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtaaaaattggagagaataaagtgtacgcaaatgttaacatccatcgggaaccttaattttacattgcttaggcaaattcattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="92350" stop="65257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67560" g_stop="67529" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.719"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67528" i_stop="65823" i_length="1706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65822" g_stop="65557" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="300" r_length="268" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E353041" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67560" e_stop="67529"/>
          <exon e_start="65822" e_stop="65557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTTGACAACCTTTGATTCGATGTTTCGCCAGAGTTTTCGTTTGAATCCTTCTGAAGATTCATAGAATCATGCAAAGACTTTTTTCTATTTTCTTTCCAATTTTCATCGTCGGAATCATATATCCTTCTATTAATTAACGGATCCATTACTATGATGTAATAGAACAATTAACAAAAATAAAAAAGAGAAGAATATACGAATTGATGATGGATTAATAATAAAAAGATGCTGGGTTCAAACTATTACAGATTAGGAAGAAATAGACGATGATGGATTAAGAATAAAAAGAAGAAAAGAAAAAAATGTAATGGATTAAGATGAATGAAGATGATTAAGGAAAAAAAAAGAACTGAAACTTGATGGAGTAAGAAGAAGACGGTAGAAGTTAATGGAAGTTGTCCTGCTTCCTAATATTTTTACTTTTTTAATTTTCAAATTTTTCAAATTTTGAAATTCAAAATTTCAAAATTTGGTCTTTTAATTAAAATTAATTAAATTTAAAAATTTAAAAATTCAAAATCAAAAAGCTGATTAAAAAGTTGAGTGTTTAAATGGATAAAATTTAAAATTAAAAAACTGATTTAAGAGGTTGAGTGTTTTAATGGAGAAAAAATAGGCATTAAAATGGGTAAATGTGTATTATAAGAGAGAGAATGTAATGTATCTAAAAACTTACAATAAAATAAAAAAAAAGAAAATTATGTAATATTTAAAAAAAGTAGGAAAAATTGGAGAATATAAAAATTATAGTTGTGTATTTAAGTTATTTTTCCTACATGTTCTAATAGTTTTATCAATTTTCAAAGTGGGTTTTCAACTTCTCATAAAGCCCATTGGGCCCATGATGAGTTGGGCTTCCATTTGAATGACGATTCAATGTCAACAAACAAGGCTCATATTACCGATCTTCAGCTTGAATAAAAGAGGATATACACACGGTAATCGCCTTATCGGTTCGTATAAAATTAGTCAATTTGCGATGAAGCATCACCTATACAACGTACTTTTTCATGATGTTTCCACACTATACAACATACTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAA--AAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAAAAATTGGAGAGAATAAAGTGTACGCAAATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAAATTCATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307024" ref_strand="+" ref_description="SGN-E307024 [cLEY-15-C7]">
      <seq>aaaaatatttgccagcctgaaaatagcccacacccctcaagggcaatgcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcaactgaatctctccatattctcctccacctccgtcactaacggaaaaaaatctacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactctgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaaacaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatccatactctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76702" stop="78883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77002" g_stop="77338" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78583" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="536" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E307024" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77002" e_stop="77338"/>
          <exon e_start="78385" e_stop="78583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTA</genome_strand>
        <mrna_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAGGGCAATGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAACTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATCTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTCTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAACAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCCATACTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738857" ref_strand="+" ref_description="SGN-E738857 [LC15AH02]">
      <seq>acccctcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76733" stop="80492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77033" g_stop="77338" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="600" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="716" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80192" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="818" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E738857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77033" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAAT</genome_strand>
        <mrna_strand>ACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315692" ref_strand="+" ref_description="SGN-E315692 [cTOA-26-C5]">
      <seq>cctcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggaattgggcactgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgttcccctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76736" stop="80450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77036" g_stop="77338" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="598" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="714" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80150" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="774" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E315692" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77036" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCT</genome_strand>
        <mrna_strand>CCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGAATTGGGCACTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTCCCCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313423" ref_strand="+" ref_description="SGN-E313423 [cTOA-13-G20]">
      <seq>tcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76738" stop="78922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77038" g_stop="77338" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78622" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="540" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E313423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77038" e_stop="77338"/>
          <exon e_start="78385" e_stop="78622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</genome_strand>
        <mrna_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367664" ref_strand="+" ref_description="SGN-E367664 [cLPT-14-H7]">
      <seq>tcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcacaaacggaaaaaaattacgccggaaaacgattctccggctaagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctagcaatgtaacctctaaatggcaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctatatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76738" stop="78917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77038" g_stop="77338" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78617" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="534" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E367664" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77038" e_stop="77338"/>
          <exon e_start="78385" e_stop="78617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTC-AACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGA</genome_strand>
        <mrna_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACAAACGGAAAAAAA-TTACGCCGGAAAACGATTCTCCGGCTAAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAGCAATGTAACCTCTAAATGGCAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTATATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201049" ref_strand="+" ref_description="SGN-E201049 [cLEC-5-N4]">
      <seq>aggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76742" stop="78747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77042" g_stop="77338" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78447" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="360" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E201049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77042" e_stop="77338"/>
          <exon e_start="78385" e_stop="78447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</genome_strand>
        <mrna_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310657" ref_strand="+" ref_description="SGN-E310657 [cLEZ-19-F22]">
      <seq>aggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76747" stop="80113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77047" g_stop="77338" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="586" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79813" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="612" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E310657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77047" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCG</genome_strand>
        <mrna_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312685" ref_strand="+" ref_description="SGN-E312685 [cTOA-8-A3]">
      <seq>gcacaaacactcacacactttctctctctatctatctgcggtcaaagtgtcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgtactgatttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttttgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76749" stop="78921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77049" g_stop="77338" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78621" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="527" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E312685" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77049" e_stop="77338"/>
          <exon e_start="78385" e_stop="78621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCGGTCAAAGTGTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTACTGATTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTTTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324257" ref_strand="+" ref_description="SGN-E324257 [cTOC-4-G6]">
      <seq>gcacaaacactcacacactttgtctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggagttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76749" stop="78893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77049" g_stop="77338" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78593" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="499" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E324257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77049" e_stop="77338"/>
          <exon e_start="78385" e_stop="78593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTGTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGAGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305177" ref_strand="+" ref_description="SGN-E305177 [cLEY-18-D4]">
      <seq>acaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttatatgtctcctggaactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattatctgggttacttgctgattcaagctataatgcctacatgttggcacaagcgattagctcggctgattgggttgctcggtgtgatgttcaactcacacaagacggcgttggcattcgctttcctgatatcaagcttaacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76751" stop="78862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77051" g_stop="77338" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78562" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="466" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E305177" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77051" e_stop="77338"/>
          <exon e_start="78385" e_stop="78562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGC</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTATATGTCTCCTGGAACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTATCTGGGTTACTTGCTGATTCAAGCTATAATGCCTACATGTTGGCACAAGCGATTAGCTCGGCTGATTGGGTTGCTCGGTGTGATGTTCAACTCACACAAGACGGCGTTGGCATTCGCTTTCCTGATATCAAGCTTAACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305964" ref_strand="+" ref_description="SGN-E305964 [cLEY-17-K24]">
      <seq>acaaacactcacacactttctctcggtatctatctgctggcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76751" stop="78817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77051" g_stop="77338" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78517" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="421" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E305964" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77051" e_stop="77338"/>
          <exon e_start="78385" e_stop="78517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCGGTATCTATCTGCTGGCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314560" ref_strand="+" ref_description="SGN-E314560 [cTOA-20-M9]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76753" stop="78982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77053" g_stop="77338" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E314560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77053" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317751" ref_strand="+" ref_description="SGN-E317751 [cTOA-30-K15]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76753" stop="78978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77053" g_stop="77338" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E317751" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77053" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207397" ref_strand="+" ref_description="SGN-E207397 [cLEC-36-M2]">
      <seq>acactcacacactttctctctctatctatctgctctcaaagtctcctgaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgagtcaagctttaatgcctacatgttggcacaagcaatgagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatgggtttctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76755" stop="78945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77055" g_stop="77338" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78645" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="545" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E207397" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77055" e_stop="77338"/>
          <exon e_start="78385" e_stop="78645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAG</genome_strand>
        <mrna_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGAGTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATGAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGGTTTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337990" ref_strand="+" ref_description="SGN-E337990 [cTOE-14-O9]">
      <seq>cacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76760" stop="78722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77060" g_stop="77338" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78422" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="317" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E337990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77060" e_stop="77338"/>
          <exon e_start="78385" e_stop="78422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</genome_strand>
        <mrna_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373208" ref_strand="+" ref_description="SGN-E373208 [TUS-32-O17]">
      <seq>cacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctaccccagtcaaacctccaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76762" stop="80186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77062" g_stop="77338" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="571" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79886" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="670" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E373208" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77062" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGAT</genome_strand>
        <mrna_strand>CACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCCAGTCAAACCTCCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307201" ref_strand="+" ref_description="SGN-E307201 [cLEY-15-L1]">
      <seq>acactttctctctctatctatctgctctcaaagtctcctgaacttggcgatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaatttctcagacaggatggttttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76763" stop="78944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77063" g_stop="77338" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78644" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="536" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E307201" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77063" e_stop="77338"/>
          <exon e_start="78385" e_stop="78644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATA</genome_strand>
        <mrna_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGGCGATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTTCTCAGACAGGATGGTTTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737638" ref_strand="+" ref_description="SGN-E737638 [LC10CF09]">
      <seq>cactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76764" stop="80445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77064" g_stop="77338" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="569" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="685" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80145" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="740" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E737638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77064" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCC</genome_strand>
        <mrna_strand>CACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311591" ref_strand="+" ref_description="SGN-E311591 [cLEZ-9-A1]">
      <seq>tttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76767" stop="80151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77067" g_stop="77338" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="566" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79851" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="630" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E311591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77067" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGT</genome_strand>
        <mrna_strand>TTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334593" ref_strand="+" ref_description="SGN-E334593 [cTOD-23-O13]">
      <seq>ttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaaccctcaggattatggttgaatatccagcatgattccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76768" stop="80403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77068" g_stop="77338" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="565" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="681" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80103" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="694" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E334593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77068" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCT</genome_strand>
        <mrna_strand>TTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCCTCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335566" ref_strand="+" ref_description="SGN-E335566 [cTOE-2-B18]">
      <seq>tgctctcaaagtctcctcaacttgacaatcatcacactttttcttaacgcaaatcagctgaatctctccatattctcctccacctgcgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcaccggaaatgaggaaaatgcgttctgttttatgtctcctggcactttgttgctcagatgcatttgctgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggaatatcggggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcgggtgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttgtcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76785" stop="78889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77085" g_stop="77338" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78589" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="459" r_length="205" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E335566" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77085" e_stop="77338"/>
          <exon e_start="78385" e_stop="78589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</genome_strand>
        <mrna_strand>TGCTCTCAAAGTCTCCTCAACTTGACAATCATCACACTTTTTCTTAACGCAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTGCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCACCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGCACTTTGTTGCTCAGATGCATTTGCTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGAATATCGGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGGTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTGTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703955" ref_strand="+" ref_description="SGN-E703955 [FA22DG09]">
      <seq>ctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatgggtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76789" stop="80602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77089" g_stop="77338" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="544" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="660" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80302" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="872" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E703955" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77089" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCT</genome_strand>
        <mrna_strand>CTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305876" ref_strand="+" ref_description="SGN-E305876 [cLEY-17-G10]">
      <seq>ggaaatgatgaaaatgcgttctgttttatgtctcctgggactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggcgttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcacacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="76926" stop="78984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77226" g_stop="77338" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="407" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E305876" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77226" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>GGAAATGATGAAAATGCGTTCTGTTTTATGTCTCCTGGGACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGCGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCACACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277064" ref_strand="+" ref_description="SGN-E277064 [cLEN-22-L15]">
      <seq>aacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="77013" stop="80519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77313" g_stop="77338" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78385" g_stop="78678" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="320" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="436" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80091" g_stop="80219" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="565" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E277064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77313" e_stop="77338"/>
          <exon e_start="78385" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTG</genome_strand>
        <mrna_strand>AACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314653" ref_strand="+" ref_description="SGN-E314653 [cTOA-20-D8]">
      <seq>gatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcgcctagatttgatggcactccccagcaaattcttactgtccaggatgtagctacccaagtcaaacctccaggattatggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatggaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78345" stop="80833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78645" g_stop="78678" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79788" g_stop="79903" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80091" g_stop="80533" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="593" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E314653" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78645" e_stop="78678"/>
          <exon e_start="79788" e_stop="79903"/>
          <exon e_start="80091" e_stop="80533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGCATCAAGGATTTGGCACCTGTCAGCTGTAAGATTAAATCGTGACCTTTTGTATCTTTTACTATATGCTTTTTATGGTCCTATATATGTGAATGGCTGTTTAGATCAGCAGTTACACCTAGTAAAGAACTTGTTTTGGGCAATGAGTTTACACTCCAAAGCGGCCTGTTTTACCTATCATATGTAATTGAGAGGCTTCTCCACTAGTTTTGTTTTACTTAATAAACCAATTGATTTCATGGATTTATTCATTTGGAATTATAAATGGTGCTTAGCTTCACTGTCTTTGTTTTGCCATTCATTTGCTGATCTGTGAAGGTGGTACAGTCACTGCTCTCTTTTCTTTTAATGCGGGACAGCCCAGGTTCTGGTGCCATACCATTATAGTGTGTCTAAAGCCATTATGTATCTGTATTTATTTGGTTCTAAAACAATTCTGATATGTTGGGACTGCGTTTATCATTTCTTTTACATACTTATGCTTCGAGAAGGGTTGATAGATGAAAAACTTAACCTAGGTTTTCATTTTGTGGAATAACTGTAGTCCTATCTTTTAAAAGTTTGACTCTCAGATCAAGTGCTAATTGGCAGTAAATCTGCATACTAATATGCTAGTATTGTTTGTATCTCTCTTTGTCCCAATTTGTATGACTTACTTTTTAGTCGGTCCCAAAAAGAATGACACATTTCTATATTAAGTAATAATTTAACTTTAAAATATCTATTTTTTTCTTAATGAAATGAAAAATAGCTAAACAAATTTCTATTTTTCATTTTAGACCACAAGTTTCGAAAGTCATCCTTTCTTTCTTAAACTTTGTGCTGAGTCAAACTACCTCACATAAAATGGGACGGAGGGAGAAATATATTTTGTCATAAAAAATTTTCTCCTCCCTCAACCACTATCTTATTTTATGTTTTTAAAAAATGTAGAATCAGATCACCTTAGAAAATGAGTTGCCCTGTGCATTTCCTTAGGACCCAAATAGATCATATATGCTTATGCCAAAACATGTTGCTGGTATAGTCTAGAGAATCTCTCATTAGAGTTGGACTTATTGTTATGGCTTGATGAAAGTTAGCCTCTGGTGATCTGAAATTCTACTAAAAAGAGATTAATCCTGATGCCTGGAACAGTGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGG</genome_strand>
        <mrna_strand>GATTTCAGCATCAAGGATTTGGCACCTGTCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGGACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739478" ref_strand="+" ref_description="SGN-E739478 [LC17CE11]">
      <seq>atggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatgtaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacggtgagttctcggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccagaaatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="79783" stop="82415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79888" g_stop="79903" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80091" g_stop="80592" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="518" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="557" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81259" g_stop="81543" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="842" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82051" g_stop="82115" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="907" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E739478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79888" e_stop="79903"/>
          <exon e_start="80091" e_stop="80592"/>
          <exon e_start="80709" e_stop="80747"/>
          <exon e_start="81259" e_stop="81543"/>
          <exon e_start="82051" e_stop="82115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGA</genome_strand>
        <mrna_strand>ATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736776" ref_strand="+" ref_description="SGN-E736776 [LC07AF03]">
      <seq>atggttgaatatccagcatgattccttctacagccagcacaatctgagtatgagaagctttgttgtttccctatctagaagtgttattgccaactatatttcatcacctgaggtgaatttcctgcgaagtatcgcatcgcgattgaatccacgagtgacaaagcgcgttttccggtttctcaacgaagatgatattgagccatcaacaagtcaaacatatggttctctagtgaagaatctcacatttgttaaaacctttgccgctgggattcttgttcccaaacactatatctggccaacggacagcagcttgtacttgcagccacatacatcggttgtttcggacgctcataaggaaggacttgagatttatgcagccgactttgttaatgatgtaccatttgcttataattatagctatgatcctgtagctgagtatttatcctttatagacaacggtgagttctcggtggacggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="79783" stop="81843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79888" g_stop="79903" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80091" g_stop="80592" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="518" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80709" g_stop="80747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="557" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81259" g_stop="81543" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="842" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E736776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79888" e_stop="79903"/>
          <exon e_start="80091" e_stop="80592"/>
          <exon e_start="80709" e_stop="80747"/>
          <exon e_start="81259" e_stop="81543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGAATATCCAGGTATGCATTTGGTTACAGTATGCTTTTGGTACTTACTTGTTGCCTACTTTCAGTTTTTCAATCTCTAAGAATCTAAGAGGAACAGTTTAATTATCATACCATGCGTTGCTGCATTTGATGTGTGGTATGTTAAGTTTGTGTAGGCCTAACAATTATTTAACTCATTCTTCTGTAAATACATTTCCAGCATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC</genome_strand>
        <mrna_strand>ATGGTTGAATATCCAG...........................................................................................................................................................................................CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547956" ref_strand="+" ref_description="SGN-E547956 [TUS-56-K3]">
      <seq>acggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="80248" stop="81770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80548" g_stop="80592" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80709" g_stop="80747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="84" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81259" g_stop="81470" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="296" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E547956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80548" e_stop="80592"/>
          <exon e_start="80709" e_stop="80747"/>
          <exon e_start="81259" e_stop="81470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACT</genome_strand>
        <mrna_strand>ACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267464" ref_strand="+" ref_description="SGN-E267464 [cLEI-8-J15]">
      <seq>cggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttaaattgtcacggaatccaaaggccagaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="80249" stop="82461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80549" g_stop="80592" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80709" g_stop="80747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="83" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81259" g_stop="81543" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="368" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82051" g_stop="82161" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="479" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E267464" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80549" e_stop="80592"/>
          <exon e_start="80709" e_stop="80747"/>
          <exon e_start="81259" e_stop="81543"/>
          <exon e_start="82051" e_stop="82161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTA</genome_strand>
        <mrna_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAAATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267465" ref_strand="+" ref_description="SGN-E267465 [cLEI-8-J17]">
      <seq>cggagtgttatctgacttcccaatgtctccatctgcgtcagtagattgcttctcgcatttgggtgcgaatgataagcctcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccataaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="80249" stop="82454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80549" g_stop="80592" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80709" g_stop="80747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="83" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81259" g_stop="81543" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="368" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82051" g_stop="82154" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="472" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E267465" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80549" e_stop="80592"/>
          <exon e_start="80709" e_stop="80747"/>
          <exon e_start="81259" e_stop="81543"/>
          <exon e_start="82051" e_stop="82154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAGGTAAGTGACAGTCTATTTTGATTCTGTATTGAGAGTGTGCTAGTATAAGCTTTGTTTACTGCTCTCATAGTTTCTCTTAATCTTTCTATGGTACTTATCCATTTCTAATCTCGCAGATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAGGTATGCTGTTGATATACACACTTTTCCAGAATAATTTATGTTGTTTAATATGTTTAGACATTTTCATTGAAATCTTGACAATGCAAGTTATCTTGCAAAGCTTTCAAATTCTCACACTTGTTTAAAATGAATTGAACATGGAGTCAACTAATTTTCATAAAATTGAAACCTTGAATTTGATTTACGTAACTTTCTAAGTAAATGAGCTTTACCCTGTCCCTTGTTCACATGCGACATTCCATGTTAAACTATGTGTTATTTATACGGACATAAATTATGTATTGTTTTACTGCAGTACAATGCGGAAATATATTACAATTAGCAATACCTAGATGTCAGTAACTAATGATGATATACCTTATAGTAGGCGTCCCCTGCACAAAAATCTCTGTTATCGTTCAGCATATAACAGTTCACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAA</genome_strand>
        <mrna_strand>CGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG....................................................................................................................ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCATAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737168" ref_strand="+" ref_description="SGN-E737168 [LC08CH11]">
      <seq>cgcttcaagtaactcttcagattatcgcacctcaaggagcaagtggtgactatcctggttgtacagatttagcatatacaaaagctgcttccgatggtgcagatattattggctgtcctgtccaaatgacaaaagatggaatacccttctgccttagttcgataaatctgatagacacgacgactgcggcccaatcgccattcagcgacatcgctaccactgctccagagcttcagataacagatggaatactcaccatcaacctaaactggagcgatattcaaacgctgaaaccggtaatatcaacccggtattcagactttagattgtcacggaatccaaaggccagaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="80951" stop="83577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81162" g_stop="81170" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81171" i_stop="81258" i_length="88">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81259" g_stop="81543" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="294" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82051" g_stop="82190" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="434" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82191" i_stop="82855" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82856" g_stop="83277" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="856" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E737168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81162" e_stop="81170"/>
          <exon e_start="81259" e_stop="81543"/>
          <exon e_start="82051" e_stop="82190"/>
          <exon e_start="82856" e_stop="83277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTAAGATATCCATGCATAACTAGTTCACCAAATGATGGCATACTGATTATCGATGTTCACTCTCTTGTTCTCTCTTCCTCCTTTGGCCTGCAGTAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAACGTAAGTTGAATTATCTGTATTGTGTTTTTTTATCTTCTTCATATCTGGGACTTCTGTACTGTGATGCATTTATCTTTGCACATATAACAAATTCAGGGATTAATTTAAGTTTTTAGCTATTTATCTTTTAGCTTGTTAATTTTTTTGAAATGCAGATATAAGCTCTTAAAGAGGAGCAATGTTCTAGGAATTCATCATCCCAGTTCTCCTTCCTCATTAAGAATGTTTTTGAAATGTGTGAAATAATTTCGAAAACTGGAATTTTATTTGGCTTAATAATAGCCTCTTTTTTCCACTTTGACATGCTTTTGTGGCATACACTTTCCGCAAGCTCTTTTAAGACATGTTCTCGAATTTTCTAGAGACCTTCATTTCTTGTATGGACATTTCTGCAATGCTTACTTTTCTTCTAATTATTTGTCATTGCAAGATTATGCACTACTTCAATTGAAATTTCGGAATACTATTGTTTCAAAATGCATTTAAACATGCTCTAATGTCTTGCAGCGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGG</genome_strand>
        <mrna_strand>CGCTTCAAG........................................................................................TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710204" ref_strand="+" ref_description="SGN-E710204 [FA54CE11]">
      <seq>cgctgaaatgttggaaagtttatgtcgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81801" stop="84060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82101" g_stop="82190" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82191" i_stop="82855" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82856" g_stop="83333" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="568" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83589" g_stop="83760" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="740" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E710204" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82101" e_stop="82190"/>
          <exon e_start="82856" e_stop="83333"/>
          <exon e_start="83589" e_stop="83760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAA</genome_strand>
        <mrna_strand>CGCTGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698120" ref_strand="+" ref_description="SGN-E698120 [FA05BC06]">
      <seq>cgttagcagacttcttgacattttccaaaactgctaatgtttctggtataatgatcagcatagagaatgctgcatacctggcaaagcagggattaggtgtaactgatgcggttttggatgccctaagcacagctggttacaataatcagacagctaggaaagttatgatccaatcaaatgacagttctgttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctcccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="81826" stop="84204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82126" g_stop="82190" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82191" i_stop="82855" i_length="665">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82856" g_stop="83333" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="543" r_length="478" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83589" g_stop="83904" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="860" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E698120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82126" e_stop="82190"/>
          <exon e_start="82856" e_stop="83333"/>
          <exon e_start="83589" e_stop="83904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAGGTGAGTTTCTTCAGGGACTACTGACCTTATTTATACCTATATTCTTATGCATCAATATAGTGTAAGCTCATTTCCGAATCCTAAATGCTTATAAGTTATATACTCACTCCTTATCACTCCTCATTCTAAGTGCAAATTTCATAGCTTCTTATGCTATTTCATAGGTGATTGAATGTGGGAAGCATGCCAAACTTTCCCTTGAAAGAATTTGGAACCAGAAAATGCTTTTGGAAAATGGTCTGTATATTTTCAAAAGGAAAGGATTCACTTTATGACTAGTATTTTAAAGGTTTAATCGTCTGCAAGTATATAAAGGATCTCAATATCTCCAATTTTCTGAAATATTCTCTACAAGTTACAACTAAGCAATTTTAACTGCTTTCCAAGTACAATAATGACTTCCTTTTTAGTAGTAGAATCATAATAATTCTATTTCCATTACTGAAATGAAGAATTACCCACTCAATGTTGAAAGGAATAAAGGATTATAAGCAAAACAATAAGAACTTTGACATCACAAAAAAAGAGAGGAAAGAACAGTCAAAGTAGCGACATTTTTTTTAAATGCTTACACGGGAAAAATCCTGATTTTAATGGATATCTTTGCACACTGGAGGTTTTACCTCCTTCCTCAATATTTGACACAATATTCTGGCTTCATGCAGAATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCT-CCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTG</genome_strand>
        <mrna_strand>CGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578282" ref_strand="+" ref_description="SGN-E578282 [LE12BG11]">
      <seq>ttctggaagaattcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatgttgtttgccatcttactgatcaaacctccctctggtgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="82680" stop="84268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82980" g_stop="83333" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="83968" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="734" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E578282" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82980" e_stop="83333"/>
          <exon e_start="83589" e_stop="83968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATG</genome_strand>
        <mrna_strand>TTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATGTTGTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291636" ref_strand="+" ref_description="SGN-E291636 [cLET-6-N12]">
      <seq>tcaagaagagtagttatgaacttgtttatttggttgacgataatatcagtgatattaagaactcaactatattggagatcaagacctttgcaaaatctgttgtcataaccaagaaatcagtcttccccagtgaagacgcttttatcattggtcaaacgaatattgtgcagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctncaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="82692" stop="84169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82992" g_stop="83333" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="83869" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="623" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E291636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82992" e_stop="83333"/>
          <exon e_start="83589" e_stop="83869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCA</genome_strand>
        <mrna_strand>TCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTNCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714002" ref_strand="+" ref_description="SGN-E714002 [FB10BA05]">
      <seq>cagaagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtatttttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="82859" stop="84521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83159" g_stop="83333" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84222" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="809" r_length="634" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E714002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83159" e_stop="83333"/>
          <exon e_start="83589" e_stop="84222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATAC</genome_strand>
        <mrna_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715259" ref_strand="+" ref_description="SGN-E715259 [FB13DB05]">
      <seq>cataagctgcagtcagcaaatctcccggtatatgtacgactatttaataacgagtttatatctcaagcatgggacttcttctcagattcgtctactgagataaacaactatgttcttggagctggtgttgatggtcttgttacagaataccctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttcgttagcatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="82859" stop="84518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83159" g_stop="83333" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84218" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="805" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E715259" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83159" e_stop="83333"/>
          <exon e_start="83589" e_stop="84218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTC</genome_strand>
        <mrna_strand>CATAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTCGTTAGCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298233" ref_strand="+" ref_description="SGN-E298233 [cLEW-18-A2]">
      <seq>ttcttctcatattcgtctactgagataaacaactatgttctgtggagctggtgtggatggtcttgttacataataccctgcgacancggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcaactcatttaacacatgattgtttccttgtatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="82934" stop="84332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83234" g_stop="83333" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84032" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="545" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E298233" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83234" e_stop="83333"/>
          <exon e_start="83589" e_stop="84032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCT-TGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCG</genome_strand>
        <mrna_strand>TTCTTCTCATATTCGTCTACTGAGATAAACAACTATGTTCTGTGGAGCTGGTGTGGATGGTCTTGTTACATAATACCCTGCGACANCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAACTCATTTAACACATGATTGTTTCCTTGTATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311051" ref_strand="+" ref_description="SGN-E311051 [cLEZ-17-B2]">
      <seq>cctgggacagcggctagataccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83009" stop="84313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83309" g_stop="83333" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84013" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="450" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E311051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83309" e_stop="83333"/>
          <exon e_start="83589" e_stop="84013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGACAGCGGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGA</genome_strand>
        <mrna_strand>CCTGGGACAGCGGCTAGATACCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310941" ref_strand="+" ref_description="SGN-E310941 [cLEZ-17-B14]">
      <seq>ggctagattccgaaggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcaatctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83281" stop="84312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83320" g_stop="83333" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84012" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="438" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E310941" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83320" e_stop="83333"/>
          <exon e_start="83589" e_stop="84012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAGATACCGAAGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATG</genome_strand>
        <mrna_strand>GGCTAGATTCCGAA...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAATCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373207" ref_strand="+" ref_description="SGN-E373207 [TUS-32-O17](-)">
      <seq>aggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtatttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83289" stop="84525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83333" g_stop="83333" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83589" g_stop="84227" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="640" r_length="639" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E373207" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83333" e_stop="83333"/>
          <exon e_start="83589" e_stop="84227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTTATTATATACCTTTGTTGTCTCTCATACCGTGTTCCAATCTTCCCCCTTTCCCCTTTCTTTCTCTTTTAGTTTCTCGATCTATCATCCTCAAACATCAGTATAAATGAATCTCCGGTGTAATCTGCTAGATTTGTGTATATTTTACCAGAGCATTTGCTTGGTCATATCCATTAAGTTGTTCGTGCGAAATGCAACATTAGTACTATATATCCTCAATTTGACACATTCCAATTGTTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGC</genome_strand>
        <mrna_strand>A...............................................................................................................................................................................................................................................................GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733779" ref_strand="+" ref_description="SGN-E733779 [LB10DF12]">
      <seq>ttgggaatgtacagggaaccgttgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtatttttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83275" stop="84525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83575" g_stop="84230" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E733779" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83575" e_stop="84230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTT</genome_strand>
        <mrna_strand>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338255" ref_strand="+" ref_description="SGN-E338255 [cTOE-13-C6]">
      <seq>ggaaccgctgtttagcatacaaaaacttgccaccatatatgagccctgttcaacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccactttcacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagttgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttgcttgtatttgcgatgtatcaaaactttcagctcttggttattctttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83289" stop="84369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83589" g_stop="84069" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E338255" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83589" e_stop="84069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACA</genome_strand>
        <mrna_strand>GGAACCGCTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTTCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTGCTTGTATTTGCGATGTATCAAAACTTTCAGCTCTTGGTTATTCTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294986" ref_strand="+" ref_description="SGN-E294986 [cLET-17-F24]">
      <seq>caacctgggagtctcctgggactcatgactgttcagtctatgccaccagtcgaacctcccagccccgtgctcgatgtaagtgatgtgactgagccaccacttccacctgttgcaaagataaacccaagtaacgacgatggttctacagctagagctcccactactcctccaaatggccaatcctcagttgttgctagcattctcatgagctcagatgcagttcttctagcaattttcatggtatattgatgaccatttctactttggtgccaccattttgtacaatttgttttgccatcttactgatcaaacctccctctggtgattatggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctccccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83339" stop="84413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83639" g_stop="84113" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E294986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83639" e_stop="84113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTT</genome_strand>
        <mrna_strand>CAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGATGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537826" ref_strand="+" ref_description="SGN-E537826 [TUS-56-K3](-)">
      <seq>ggagtcgcacatgatggcggcggtagtcagctcatttaacacatgattgtttccttgtatttgcgatgtatcaaaattttcagctcttgtttattctttacattcttcctcgtttctatttttcattccttccctcccctttttttttccattttgggtcagattgagtgggtgtctggggtttattgcctatttatttgtaagaattctgttttggatataagcaatgatcaatttagttagtattttcaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83668" stop="84526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83968" g_stop="84231" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E537826" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83968" e_stop="84231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTT</genome_strand>
        <mrna_strand>GGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTA-TTTTCAAAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225967" ref_strand="+" ref_description="SGN-E225967 [cLEL-31-M2](-)">
      <seq>cctctttaagatacaatgagacaggtttttgtagcttgcaaaggggttgattcttagttctccgataagctccatcttaggggcttagcagttcattgagcaataagtggtgatttgagtgtaaacgaaggtctggacataatgttcatgccacctcagagacagaaatgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="86978" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86678" g_stop="86276" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86275" i_stop="86225" i_length="51">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86224" g_stop="86205" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="418" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E225967" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86678" e_stop="86276"/>
          <exon e_start="86224" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATTCTTTGTATAAAAAAAAATAAAAAATTAC</genome_strand>
        <mrna_strand>CCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGCAAAGGGGTTGATTCTTAGTTCTCCGATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACG-A--AGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTA...................................................ACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284264" ref_strand="+" ref_description="SGN-E284264 [cLER-16-H1]">
      <seq>aaaacttgccacctcagagacagaaatgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttggctatttgttggcaagtttttcatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="86829" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86533" g_stop="86221" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E284264" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86533" e_stop="86221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATTCTTTGTATAAAA</genome_strand>
        <mrna_strand>AAAACTTGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTGGCTATTTGTTGGCAAGTTTTTCATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712450" ref_strand="+" ref_description="SGN-E712450 [FB04DE10]">
      <seq>ggctaatttccggaaagacctctcagttgaggattggagacttgtcatgaaactgaagaccctctttaagatacaatgagacaggtttttgtagcttgcaaaggggttgattcttagttctccgataagctccatcttaggggcttagcagttcattgagcaataagtggtgatttgagtgtaaacgaaggtctggacataatgttcatgccacctcagagacagaagtgagcaaaagtgaagaatgcaaatgttgctgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaaccgtgcaaaagattattggttggctatttgttggcaagtttttcatacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="87036" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86738" g_stop="86233" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E712450" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86738" e_stop="86233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATT</genome_strand>
        <mrna_strand>GGCTAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGCAAAGGGGTTGATTCTTAGTTCTCCGATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACG-A--AGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAGTGAGCAAAAGTGAAGAATGCAAATGTTGCTGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACCGTGCAAAAGATTATTGGTTGGCTATTTGTTGGCAAGTTTTTCATACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226255" ref_strand="+" ref_description="SGN-E226255 [cLEL-31-M2](-)">
      <seq>cacctcagagccagtaatgagcaaaagtgaagaatgcaaatgttgatgcctgctgcaactgatttcctttggtcggtactccgagcattctgtgtatgctgtttttggtactgaagtgagatttatgccacattgaccaatgtcagagttgtacaggggcacaaaacggcaacgcattttttcataatacagagatgtaatattgactttttgatataccaaaaacagtgcaaaagataattggtctgcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="86824" stop="86007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86524" g_stop="86280" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="268"/>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E226255" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86524" e_stop="86280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTG</genome_strand>
        <mrna_strand>CACCTCAGAGCCAGTAATGAGCAAAAGTGAAGAATGCAAATGTTGATGCCTGCTGCAACTGATTTCCTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACGCATTTTTTCATAATACAGAGATGTAATATTGACTTTTTG--ATATACCAAAAACAGTGCAAAAGATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745719" ref_strand="+" ref_description="SGN-E745719 [GI|47105151]">
      <seq>ggagagagaggggaagaagaagatgaacaagaagaagctgaaaattcttctttctctctttgctctcaacacaattactctttatctctacttctcttcacacccagatcatttccgccacaatttccctaaaaaccactatattactaccggaaaccgcttttcttcatcggaaaaccatccaaatttgcactcctccgttgcttcccaatccaaaccatggcctattttgccgtcttacctcccttggtctcagaaccccaacgttggttggagatcgtgtgagggttattttggaaatgggtttactcgtaaaatcgatcttctcaaagcctcgccggagattcaccggaaattcggtgaaaacagatatttcggtgaaggaggagtaggagggtggtttaggtgttttttcagtgagacattgcagagttcgatttgtgaaggaggggtaataagaatgaatccggagaaaattttgatgtctaaaggaggagagaaattggaagaagtaataggaaggggagaagaagaagagttacccatttttgaaaatggagcttttgagatagaggttaatgaaagaacaaaaattgggaaaaaattagctgatgaaaatttcttgaataaatatttacctgaaggtgcagtctcaaagcacactatgagggaattaatcgactcgattcgattagttgacgccaatgattttcattgttctgagtggattgaggagccatcacttttgattacccgatttgagtatgcaaatctttttcatacaattactgattggtatagtgcatacgcggcatccagagttactggcttacccagtcggccacatttggtttttgtagatggccattgtgagacacaattggaggaaacatggagagcactgttttcaagcctcacttatgctaaaaactttagcggtccggtttgttttcgccatgctatcctctcgccgttgggatatgaaactgccctgtttaaggggctttcagaaagtatcggttgtactggagctcctgcccatgatttgtggcaaaatcccagtgatagtaaaactgcacggttgtccgagtttggagagatgatcagagcagcctttggatttcctgtggatagacagaacatcccaaggacagtcactggccacaatgtcctctttgttagacgcgaggattatttagctcacccacgtcatggcggaaaggtacagtctaggcttagcaatgaacaagaagtatttgattccataaagagctggtccttgaaccacacagagtgcaaagtaaatgtgattaacggattatttgcccacatgtccatgaaagatcaagttcgagcaatccaagatgcttctgtcattgtaggtgctcatggagcaggtctaacacacattgtttctgcatcaccaaaagctgttatactagaaatcataagcagtgaatataggcgcccccatttttctctgattgcttattggaaaggattggagtaccatcccattgatttggagggatcttatgcggatccaccagtcgtaattgacaagctcaacagtattttgaggagtcttggctgctaaatctactcaacagtttgaacagttcaacttttctctacaagactggaatttggagcctgaaaatcttgtaaaatatgtttcatctgcagttctatagttttgctgcattcttgatcctcaatccggtgttcacaagcttcacaggttctggcagttactaatttattagcccctctcagttatgaactctcagaacgatcgttatggtgagctcattcaagatattctttatggtgcaatattacaagtcactcgcgatacacacatttgtaaatcacattataggtgtgtacaacttcattacaattcgttgtcaattgttttctgcaatttattatcttcttgttctgggaagacacagattaacaagcatgttgaagtagcagattaacaagaacctcagtgtactgttcagtgatgtatgattgtaacttgtaacaaaacaaaagaaatgagacatttaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="96746" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96447" g_stop="95724" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95723" i_stop="94619" i_length="1105">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94618" g_stop="94469" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="874" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94468" i_stop="93933" i_length="536">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93932" g_stop="92740" g_length="1193"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="2067" r_length="1193" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92739" i_stop="92157" i_length="583">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.495" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92156" g_stop="92146" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="2068" r_stop="2078" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E745719" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96447" e_stop="95724"/>
          <exon e_start="94618" e_stop="94469"/>
          <exon e_start="93932" e_stop="92740"/>
          <exon e_start="92156" e_stop="92146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAGGTTTGATTTTTTGGAACTTTGTTTGATCTGATATTAAAGTTTTGATCTTTGGGAATGTTTGTTGATATGGAATACAGTAATGGATTTTGTTTGATCTATTTAATGAAGATTAATTTATCTAATTGTTGCTTTAGAATAGTAGCTCAGTGTTATAAATGTTGTTTTATATGTGTCATTTAAGATAATTCCTTGAAATCTGGAGTAGAGGGTGGATAACATTAGTTAATTAACTTTTGGATTGTGGTTGCATTTCATTTGATTGTGTTATAGATAAAGTGGTGATTTTGGAATCTGTTACTAAATATTTTGTTAAGATTTTAGAGTTTATCCAGAGCTTTCATTGTAGTTCTGTATCTGAATCCATAAAGTTATCGAATTTATGGACCTCGAAGAGTATTTATTGTTGGTAGTTAACGACCTTAAGTTGGCAAATGGTCAGTGTATGTGATCTATGGTGAATCCTACGACTTTTGATCTCCTTTCATCTCTTTATTTCCATTTTACAAATGGAATATGGTAGCATTTGTCTGAGCTGGTCAGCTTTGTCCTGAAAACCTTAATAACCAATTCGATTAAATGCCTTTTGAAACTTACTTGGACAACTGGTTGTTGCATTTTGAGGACTATCGACTTGATCTGACAGTATGCCAAACATGGCTTCTATGTTAGGAGTAACTTATGTCTAGGAGGAAATCCGTGCTAGATAGGGACCTTTCACTTGGTTACTAGCTACTCAAAGTTCCAGTATGACCAGTTAATTTTAGATCTTTGCTGTGGTATCATTCAAAGTCCAAAGTTTTGTTGTGCACTAACAAGAGGAATACATGAAGGATGTAGCACTGTTAGGTTACATTACCTTATCCACTAATGAAAGAGAATCAACTAAAATGATGATAAGTGGTGTTCTATTGCTATTTTAGATTGCTGATTATTGGAATATTTATGAGATGAACATCTTTTCAGTTCTTCATGTGCTAATCAAAAAATTATCCATGCTAGATGTCAGTGTTCAAGCAACCATGTAAGGAAGCTGTGTCTTTTGTTAATGCCATCTTTCCGTAATCGATGCCTTACATTGCTGTTATTTTTCCAATTTTTGTTTCAGTGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAGGTACGTTTGAAATTATTGTTGATTATGGTGTGCTGCATTGTTCTGTGTCATGGATGAATGTAGACTCAGTAATTTTTCTCTAGCAATCCAATGGACTTGAGATTCTTGTGTCAAGTTGGTTTGACTTAATCCCGAGTTTCCCTTTGTTTCTGTTTCTATTTGACACAGCGATTTACTCAGCAGTACCTAGTTGTTGCAATTGGCTCATTCTTACTTCTATTTACATGTCACTATTTATTTGAATGGTCCTTTGATGGTAAAAAGAAGTTCTATTACTAAAAAAAAATTAGCAATGATTTCATTTCTGGACAATTTATTGTTACCTTACATCCCCGTCTTGAAAATTCCTTCCTGTGCATACTTTTATGGGACTGACGTTCATAGCCTACGCTTTCATGTGTTTAAAGCTCTTTCACCCCATTACTATAATCTTGATGATTACTTGGCCAAGATTTTTTTTGGCATGTTTCATTTATCTTCAAATTCAGTTTCTTCATGTTAACTGCTTTTACTCCTGTTTGGAAAAAAAAATCCAGACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAGAAATTTTCGCGTATTTTTAGCTCTCTCTCTATATCTTATTTCTCTTAAATCCATCGCTTTGTGTTCTTCAGGTTCTACCTATAGCACATATTTTCTTATTTTTCAGATGTTGTGTGCATCTCTCGTAACGCGGGATACTTTTTACACGAGCTATTTTTTTAGTTGTGCTTGAAATGATATACTTAAATCCAGTCCATAGAATATGAAATAAATCAAAATGTTTTTTCTATAATGAAAATAGATCAAACAATAAAAAATCCTATCATGGGTAAATAATTTATCAGTTAAAATAAAAATCAACAATTCAAGACATGTGTCTTTCGTATATAATTTATCAAAAATTAAGAATGATTAATATGCATTTTAGTTAATTATGATTAAAATAGATGGTTGAGCTAAAAAATAGGCGCAGATAAATATTTATTGTTTTTTTTTAAAAAAAAAAATGCATCAAATCCGAGTCGTAATTTTCTTAGGCTCCTAATAATATTAACGGATAGCATTTATTTCACCCACCTAAAAAATAAAACTGTATTTACTAATTTTTTTTTTTGAAAAAAAAAAGGTTTATTTATTAAATCTAAGAGGGAAAAAAA</genome_strand>
        <mrna_strand>GGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACACACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348963" ref_strand="+" ref_description="SGN-E348963 [cTOF-29-O2]">
      <seq>tcactggccacaatgtcctctttgttagacgcgaggattatttagctcacccacgtcatggcggaaaggtacagtctaggcttagcaatgaacaagaagtatttgattccataaagagctggtccttgaaccacacagagtgcaaagtaaatgtgattaacggattatttgcccacatgtccatgaaagatcaagttcgagcaatccaagatgcttctgtcattgtaggtgctcatggagcaggtctaacgcacattgtttctgcatcaccaaaagctgttatactagaaatcataagcagtgaatataggcgcccccatttttctctgattgcttattggaaaggattggagtaccatcccattgatttggagggatcttatgcggatccaccagtcgtaattgacaagctcaacagtattttgaggagtcttggctgctaaatctactcaacagtttgaacagttcaacttttctctacaagactggaatttggagcctgaaaatcttgtaaaatatgtttcatctgcagttctatagttntgctgcattcttgatcctcaatccggtgttcacaagcttcacaggttctggcagttactaatttattagcccctctcagttatgaactctcagaacgatcgttatggtgagctcattcaagatattctttatggtgcaatattacaagtcactcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="93952" stop="92653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93652" g_stop="92953" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E348963" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93652" e_stop="92953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCG</genome_strand>
        <mrna_strand>TCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTNTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="100918" stop="99873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100618" g_stop="100172" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100618" e_stop="100172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGATAGTGGCGAGCGAGATTCCTGGAAGAGAGACG-CTGACAAATTTTAGATAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTAATTTAAGTTATTAA</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="100919" stop="100024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100619" g_stop="100298" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100619" e_stop="100298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="100919" stop="100024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100619" g_stop="100329" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100619" e_stop="100329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392802" ref_strand="+" ref_description="SGN-E392802 [TUS-36-P16]">
      <seq>tttgaaactgtcacctacatgttgcaggtaatttattttcaattttacactttttataaaaataaaatcagaaaaaaaagaagcaaattaagatattagacctaatccatcgaagcctctattggatagactgaacgaactgtccaatggtaatgaataaggaaccatttgcggagattgattcaagggattaactttatttgaccttattaaagctgaaaagaaatttcatttaaaccctttaattaaacggtatttattttagatactttatatcggcttgtgtctcttttcatatgatgttggtgcaaattagtttccacgtttcataaaattaaaggagtagttgaataaatgtgattgttcaacttaaaaggatcaaaataaatatgtttaacttataaatgacttagattaatttatgtttgaacagtcagcacataaatgtccattttgtttttgtatcctaaatttcatgatgttgaaaattatttaggtaaacaacatttatatgttaaaatttcatattaattgaaattaaagcaagtttttttttatttttatatttaatattattatttgtacaaaagggaggctcagaggcgaaaccatcttatactaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="104925" stop="103700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104625" g_stop="104000" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E392802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104625" e_stop="104000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</genome_strand>
        <mrna_strand>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239872" ref_strand="+" ref_description="SGN-E239872 [cLED-29-H20]">
      <seq>ttgaaactgtcacctacatgttgcaggtaatttattttcaattttacactttttataaaaataaaatcagaaaaaaaagaagcaaattaagatattagacctaatccatcgaagcctctattggatagactgaacgaactgtccaatggtaatgaataaggaaccatttgcggagattgattcaagggattaactctatttgaccttattaaagctgaaaagaaatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="104924" stop="104094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104624" g_stop="104394" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E239872" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104624" e_stop="104394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCAT</genome_strand>
        <mrna_strand>TTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTCTATTTGACCTTATTAAAGCTGAAAAGAAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712239" ref_strand="+" ref_description="SGN-E712239 [FB04BB12]">
      <seq>ccgtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaagctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaagtgagaatgtcgcctgaagctacgagatcatgtatgtaaactcattatgctacaaaaaagcacacaccacataaagttgtaactgccatcaagcagcaaagttatgtctattcatttttccttggtgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109829" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109529" g_stop="109478" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="125" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="462" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107759" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="497" r_length="35" r_score="0.784"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107758" i_stop="106467" i_length="1292">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.676" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106466" g_stop="106419" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="541" r_length="44" r_score="0.583"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106418" i_stop="105412" i_length="1007">
            <donor d_prob="0.900" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105411" g_stop="105370" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="583" r_length="42" r_score="0.619"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105369" i_stop="104599" i_length="771">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.416" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104598" g_stop="104528" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="654" r_length="71" r_score="0.648"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E712239" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109529" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107759"/>
          <exon e_start="106466" e_stop="106419"/>
          <exon e_start="105411" e_stop="105370"/>
          <exon e_start="104598" e_stop="104528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAAAAAAGAATTTTGAGAACAGCCTTAAAAGTTGCATCATTAACTGTTTTCTTAATCAGTGTTGAGATGGATCTTCTGCTGAACTTTCATCTTGTTTGTTGCACTTCCAATAGATACCTTCAAACAATTGTGGGGTAGAGAAATTGTGTCCGAAAGATCCTCAATTCAAAATAGAAGTATCCCCAACTCTACAATCAATCTCTCACACATCCTTGCGTGATTATTACATATCTTCTTCGCATGTCTGAATCAAAATTCAACTTTGGCTCCTTCATAATGTTTGTTATTGAAGTCACTCGTTTTAACTTTCATTTGTATATCTTCATTTTCTAGTTGTGGACATTCTTGATTGGTCAATAATCTGTCTTATACAACAATATTGGTCTATTATACAACAATATTGATCTAACCATCACTCTATAAAACGTAAGTAAATAGTTTAGTAACTATAAAGATATGACATATGAATCTAACTCAATCCTAATTAGCTCATGAAGAGAGAATTGTCTAAGTTCATATATAAAGAGACCACAACTCTATTTCCTAACCAATGATACTTTTACCTACTCGAACACACCTCTTCACGCCCACGCCCAAGTGCAGCGTGGTCCGAGAGTTCAAACGGATATCATGTAAAAATATGACACAGCTTAACTCTAACTCCAAAAGCTAATTCATAAGAAGAGAATTGTTTAAGTCTATATAAAGAGACCACCAATCCATTTCGTAATGACCTGATAGGAGATTTTACGTGTAATAATGTTTAAGCCTTACGTATCTAAGTGTAAATAAATATCTGGTATTGCAAAGGGATACGACATCAAAACGATGGTATTGCATCATCATT-TGCTATAATAAATATACTTTGAAAGGAAAAAAAATGTGTCAATGGAAGTTGGCTATATTTTCATATTGAATGTAGAGTCTTTTGTAGTAATCCAATCCAACTATACATCCATTTTTGAATCTTTATTTTTGACTAATTCAAATAATTCTAATTTTACAAGGCTCTTAATTATTTTCGTCATGCTTTTGTTCTTATGACGCCAACAATTAATTAATGGACCCCCTTCATAGACGTAGATCTTTAGAAATAACACACAATTTTGTTAATGTGACAAGATTTTGGTCTACTTGATTTGATTTCCCTAATTGTCGTTTCATAGAATCTTGTCCTATCACTATTAGGTGGTTTTAATTCTTCGATCTTTAGAAATAACACACAATACTAGTTTATCGTCGAATTTCTATAAAATTTATTAAATAACTATCTAAATTTGTTTGTTTAAAAAAAATTCATTTCCACTTGATCTGAAATGCTATTTATGTTCAATAACTTTGATCTGCCTAAGTAGAAACATGCGTCTTATAAATTAAATCAGTTTAAATGTATCTCACAACGTAGGACGCGGTATATTTACTTGTTCAGCTTTATACAAATTTAAGCATTTACTTATGCTCGCCTATAATTGAAGCATATATATGGATATCCACTATATCAAAAATGATCATTAGCGACAATTAATTCTTAATTGTCACATAAAATGACAATTAACACTCTTTGTATATATCCCTAAAATCTGTAGCGATATTGATCCTAGTGATATTTAACTATTGCCGCTAAAAATTATTTTTATTATAGTTATCTAAGGTTAAGTTAAAAGACACGCTTGTGTTTTACGGAAAAAAGAAAGGGAGACATCATGAAAACGTTAGGCTGATGTTATAAGTAATATAAACAAAAACAAAAAAATAAATAAAAGGTGCCTGCATCTGAAGGAAACTCCCTCTTCCTTTCATATATTTTGACTTTTAATTGCCAATTCCACACTATATATAATACTAACACTTTATAATTAGTTGATAACACAAACCACACAAATATAATACTACAAACAAAACTCATAAACAAATATAATAGTATTTCTTTTTTTCTATTTTAGTACTTTTAAACAAGACAAAAATGTCAATTGTAAGAGAACCTCGTTCTATTGCTAGAAAATTTTTGGCAAGGCCTCAACAAGAAGGACTTGGAGCTGTTGTTAGAAGAAGCATTGGAAGGTATATTCACTTTTACAATTTTTCGTTCGAGTTTTGATGAAATTATACTGAATATATTGTTATTTTTTAATACGATATATTTTTCATTTTTTCTTTCGTTTGAGAGTATAATGAAAGATGGGGAATAAAATCTGCGTAAATTCTATCTTTTTCAGACTTTATACGTGGAACTATATAGTTGAAGTCAATTACATTTCAAAATTTAATATCATAAATTTATGTTCTACATCGAAAATACTGAATATTTGTTCATAAATTGATTTTTTTATTTTTAATTTTCATCTTTCAGGTTTGAGATAAGATACTTTGATCCATTCATTGTTTTGGATGAATTCTCAGGTATGTTTAATTAAATTCTTTGAATTAATTATTAACTTAATTTTTTGGCATTTTATCCATATGTTAATCTCTTCCTTTTTTTTTTCTTTCTAATTAACAATTAATTACAGTTTCTGCTCCAGCTGGATTTCCTGATCATCCACATAGAGGTAGTAATTAGCATTCTAATTACATTTAATTTCTTCTAATTTTTCCCATTTAAAATATTTTTTTATTCTCTTTGCTAATATCTTTTCTTGGATTTTACAGGCTTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTA</genome_strand>
        <mrna_strand>CCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAAGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAAGTG-AGAA-TGTCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-A-G-CTACGAGATCAT-GTA-TGTAAACTCATTATGCTACAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACACACCACATAAAGTTGTAACTGCCATCAAGCAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTCTATTCATTTTTCCTTGGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280113" ref_strand="+" ref_description="SGN-E280113 [cLEL-7-P24](-)">
      <seq>tttttttttttttttttttgttctcaaaattcttttttttcataaagtaggtggttctcaaaattctcagttaagcatatgcaaaacaaacttgaatctaactctgatacaagaagtttatcattccctttaaatgaagtgagactgttgaatagggaagaaaaaccaaaatctaatttgttctgataatttaaaaattggagcctgcaactctaagcagcagcaccggcacccttccctttcttcttctgaagtttcttcatgtaaaattcaagttcctctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1424" stop="107824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107238" g_stop="107524" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E280113" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107238" e_stop="107524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAACTTTTAAGGCTGTTCTCAAAATTCTTTTTTTTCATAAAGTAGGTGGTTCTCAAAATTCTCAGTTAAGCATATGCAAAACAAACTTGAATCTAACTCTGATACAAGAAGTTTATCATTCCCTTTAAATGAAGTGAGACTGTTGAATAGGGAAGAAAAACCAAAATCTAATTTGTTCTGATAATTTAAAAATTGGAGCCTGCAACTCTAAGCAGCAGCACCGGCACCCTTCCCTTTCTTCTTCTGAAGTTTCTTCATGTAAAATTCAAGTTCCTTTCCTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGTTCTCAAAATTCTTTTTTTTCATAAAGTAGGTGGTTCTCAAAATTCTCAGTTAAGCATATGCAAAACAAACTTGAATCTAACTCTGATACAAGAAGTTTATCATTCCCTTTAAATGAAGTGAGACTGTTGAATAGGGAAGAAAAACCAAAATCTAATTTGTTCTGATAATTTAAAAATTGGAGCCTGCAACTCTAAGCAGCAGCACCGGCACCCTTCCCTTTCTTCTTCTGAAGTTTCTTCATGTAAAATTCAAGTTCCTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696164" ref_strand="+" ref_description="SGN-E696164 [LH_Ea08G18](-)">
      <seq>atgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtcagaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaaatttgattttgttttttcttccctattcaacagtctcacttcattgaaagggagggataaacttcttgtatcagaattagattcaagttaaatgtgcatatgcttaactgagaatttgagaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109644" stop="43496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109344" g_stop="109289" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="560" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107534" g_stop="107274" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="820" r_length="260" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E696164" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109344" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAA</genome_strand>
        <mrna_strand>ATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCAGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTTGATTTTGTTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAGGGATAAACTTCTTGTATCAGAATTAGATTCAAGTTAAATGTGCATATGCTTAACTGAGAA-TTTGAGAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733334" ref_strand="+" ref_description="SGN-E733334 [LB04CD06]">
      <seq>cgtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttanagttgcaggctccaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaaggaatgataaacttcttgtatcagagttagattcaagtttgttttgcatatgcttaactgagaattttgaaacccccctactttatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109828" stop="106975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109528" g_stop="109478" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="124" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="461" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="628" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107275" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="887" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E733334" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109528" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAA</genome_strand>
        <mrna_strand>CGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTANAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAA-GGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAAACCCCCCTACTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692324" ref_strand="+" ref_description="SGN-E692324 [LH_Ea08G18]">
      <seq>tccaactcttgcagagccgtcgtccgtctttgagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtcagaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttanagttgcaggctccaatttttaaattatcagaacaaatttgattttgttttttcttccctattcaacagtctcacttcattgaaaggggaatgataaacttcttgtatcagaattagattcaagtttgttttgcctatggcttaactgaaaattttgagaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109851" stop="106989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109552" g_stop="109478" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="148" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="485" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="652" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107280" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="909" r_length="257" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E692324" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109552" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTCTTGCAGAGCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAA-GGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATAT-GCTTAACTGAGAATTTTGAGAACCACCTACTTTA</genome_strand>
        <mrna_strand>TCCAACTCTTGCAGAGCCGTCGTCCGTCTTTGAGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCAGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTANAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTTGATTTTGTTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGGAATGATAAACTTCTTGTATCAGAATTAGATTCAAGTTTGTTTTGCCTATGGCTTAACTGAAAATTTTGAGAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694848" ref_strand="+" ref_description="SGN-E694848 [LH_Ea04P22](-)">
      <seq>ggtgccaaatgctaagactgttagaaggataagagtcagaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaccaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtgtattggctgcaatctcatcgcgacctggccagtgtggtcgtcctgatggttacatattggaaggaaaggaacttgaattttacacgaagaaacttccgaagaagaaagggaagggtgccggtgctgctgtttagagttgcaggctccaatttttaaattatcagatcaaacttgattttgttttttcttccctattcaacagtttcacttcattgaaagggaatgataaacttcttgtatcagaattagattcaaggttgttttgcatatgcttaaccgagaattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="108627" stop="106994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108327" g_stop="108027" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="468" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107534" g_stop="107294" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="709" r_length="241" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E694848" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108327" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAG</genome_strand>
        <mrna_strand>GGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCAGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTACCAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTGTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTCCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACACGAAGAAACTTCCGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGTTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGATCAAACTTGATTTTGTTTTTTCTTCCCTATTCAACAGTTTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAATTAGATTCAAGGTTGTTTTGCATATGCTTAACCGAGAATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694821" ref_strand="+" ref_description="SGN-E694821 [LH_Ea04O19](-)">
      <seq>gtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagccctatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttccatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctcccatttttaaattatcagaacaaatttgattttgttttttcttccctattcaacagtctcacttcattgaaagggaatgataaacttcttgtatcagaattagattcaaaatggttttgcatatgcttaactgagaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="108583" stop="106997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108283" g_stop="108027" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="424" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107534" g_stop="107297" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="662" r_length="238" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E694821" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108283" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTT</genome_strand>
        <mrna_strand>GTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCCCTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTCCATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCCATTTTTAAATTATCAGAACAAATTTGATTTTGTTTTTTCTTCCCTATTCAACAGTCTCACTTCATTGAAAGGGAATGATAAACTTCTTGTATCAGAATTAGATTCAAAATGGTTTTGCATATGCTTAACTGAGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714496" ref_strand="+" ref_description="SGN-E714496 [FB11CD12]">
      <seq>gtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctcaaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaagggaatgaataaacttcttgtatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109827" stop="107040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109527" g_stop="109478" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="460" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="627" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107331" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="832" r_length="205" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E714496" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109527" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATG-ATAAACTTCTTGTATCAGAGTTAGATTC</genome_strand>
        <mrna_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCAAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGAATAAACTTCTTGTATCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338916" ref_strand="+" ref_description="SGN-E338916 [cTOE-21-P17]">
      <seq>ccgggctgcatgcgaggctgttacaaggaagtctcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaaattagattttggtttttcttccctattcaacagtctcacttcatttaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="108532" stop="107064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108239" g_stop="108027" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="381" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107534" g_stop="107364" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="552" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E338916" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108239" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGGGTA-GCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGG</genome_strand>
        <mrna_strand>CCGGGCTGCATGCGAGGCTGTTACAAGGAAGTCTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690981" ref_strand="+" ref_description="SGN-E690981 [LH_Ea04O19]">
      <seq>ccgtagaacatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtcagaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcanaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaattatcagaacaaatttgattttgttttttcttccctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109820" stop="107088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109525" g_stop="109478" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="120" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="457" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="624" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107388" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="771" r_length="147" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E690981" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109525" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATT</genome_strand>
        <mrna_strand>CCGT-AGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCAGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCANAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTTGATTTTGTTTTTTCTTCCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691008" ref_strand="+" ref_description="SGN-E691008 [LH_Ea04P22]">
      <seq>cattagaacatcgaaaccctaaggacctccgtcaccggcgactatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagccagcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtcagaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgtttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagttggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgcgacctggccagtgtggtcgtgctgatggttacatattggaaggaaaggaacttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggtgctgctgcttagagttgcaggctccaatttttaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109825" stop="107124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109525" g_stop="109478" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="120" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="457" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="624" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107424" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="735" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E691008" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109525" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTA</genome_strand>
        <mrna_strand>CATT-AGAACATCGAAACCCTAAGGACCTCCGTCACCGGCGACTATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCAGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCAGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGTTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGTTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309112" ref_strand="+" ref_description="SGN-E309112 [cLEZ-1-C19](-)">
      <seq>tgtccaaaaaagctggaaagaggcacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatgcgactggccagtgtggtcgtgcttatggttacatattggaaggaaaggaccttgaattttacatgaagaaacttcagaagaagaaagggaagggtgccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="108057" stop="107162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107757" g_stop="107629" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107534" g_stop="107462" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="197" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E309112" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107757" e_stop="107629"/>
          <exon e_start="107534" e_stop="107462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGT</genome_strand>
        <mrna_strand>TGTCCAAA-AAAGCTGG-AAAGAGGC-ACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCAT-GCGA-CTGGCCAGTGTGGTCGTGCTTATGG..............................................................................................TTACATATTGGAAGGAAAGGACCTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317755" ref_strand="+" ref_description="SGN-E317755 [cTOA-30-M13]">
      <seq>gccgtcgtccgtctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtancagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtggggcgtctattggctggcatctcatcgcgacctggccagtgtggtcgtgctgatgggtacatattggaaggaaaggactttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109837" stop="107206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109537" g_stop="109478" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="133" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="470" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107629" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="638" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107534" g_stop="107506" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="667" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E317755" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109537" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107629"/>
          <exon e_start="107534" e_stop="107506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGT-GGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGGGTATGAATTCTCTTATCATTATGTATTGTGATATTTCGGTGAAAAATGCCCAATTCCATTGGCTTACACATCTTCTTTCAACGAACTTTGACAGTTACATATTGGAAGGAAAGGAACTTGAAT</genome_strand>
        <mrna_strand>GCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTANCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGGCGTCTATTGGCTGGCATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG..............................................................................................GTACATATTGGAAGGAAAGGACTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309111" ref_strand="+" ref_description="SGN-E309111 [cLEZ-1-C19]">
      <seq>tttgagaaaatctaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaaggaaggagaggaggctgaggctgtagcagaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaacaggatcgcaagattgacccacatgtcgaggagcaatttgctagtgggcgtctattggctgcaatctcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109824" stop="107357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109524" g_stop="109478" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="120" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="457" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107657" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="596" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E309111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109524" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGC</genome_strand>
        <mrna_strand>TTTGAGAAAATCTAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291946" ref_strand="+" ref_description="SGN-E291946 [cLET-7-A22]">
      <seq>ctttgagaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttnccaaaaggaaggagaggacgctgatgctgtancacaggagaaaaagagtaaccatgtccaaagaaagctggaaaagaggcaccaggatcgccagattgacccacatgtggaggagcaatttgctagtgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109825" stop="107381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109525" g_stop="109478" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="121" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108027" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="458" r_length="337" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107795" g_stop="107681" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="573" r_length="115" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E291946" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109525" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108027"/>
          <exon e_start="107795" e_stop="107681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAGGTATTTGAATTGTCTTTTTCAACTACATGCTTCTCCTATATTATGTGATAATATTTTCCTTATCCATGATTCCATAATCAGTTATATTTTATTTGTCTAACGTTCTTATTCTAATTAAAAAAAAACAAGTGAAACTTTCTTTTTGATAAAGGTTGCAAAGCTTTAGCTACAACCAAATTTAATAGAAGTCTTTCTCTGTTTTGTTGACTTCTATTTGTATGATCCAAACAGGAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGC</genome_strand>
        <mrna_strand>CTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTNCCAAAAGGAAGGAGAG.......................................................................................................................................................................................................................................GACGCTGATGCTGTANCACAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCACCAGGATCGCCAGATTGACCCACATGTGGAGGAGCAATTTGCTAGTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200202" ref_strand="+" ref_description="SGN-E200202 [cLEB-7-P18]">
      <seq>gcacgaggaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaaaactgctgcttctttcaaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109821" stop="107733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109526" g_stop="109478" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="122" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108033" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="453" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E200202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109526" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAA</genome_strand>
        <mrna_strand>GCACGAGGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAAACTGCTGCTTCTTTCAAAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289640" ref_strand="+" ref_description="SGN-E289640 [cLET-4-N5]">
      <seq>cccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaagaagactgctgcttcttccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="108644" stop="107737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108344" g_stop="108037" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E289640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108344" e_stop="108037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAA</genome_strand>
        <mrna_strand>CCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335585" ref_strand="+" ref_description="SGN-E335585 [cTOE-2-P16]">
      <seq>acctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109800" stop="107759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109500" g_stop="109478" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="96" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108059" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="401" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E335585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109500" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGA</genome_strand>
        <mrna_strand>ACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294977" ref_strand="+" ref_description="SGN-E294977 [cLET-17-D20]">
      <seq>aaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcggtcgcaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109818" stop="107760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109518" g_stop="109478" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="114" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108060" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="418" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E294977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109518" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</genome_strand>
        <mrna_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324665" ref_strand="+" ref_description="SGN-E324665 [cTOC-9-L17]">
      <seq>gtctttgagaaaatcgaaaccctaaagaccggcgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaagttgacgcagctccatttaagcagtggtatctccagcactatggagttgaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109827" stop="107771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109527" g_stop="109478" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108071" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="416" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E324665" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109527" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCG</genome_strand>
        <mrna_strand>GTCTTTGAGAAAATCGAAACCCTAAAGACCGGCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAAGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338186" ref_strand="+" ref_description="SGN-E338186 [cTOE-13-F8]">
      <seq>gaaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggtgccaaatgctaagactgttagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgaggttggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcgtctgttggatgtggtgtataacgcctctaacaatgagttggttaggacacaaaccctggtgaagagtgcaattattcaggttgacgcagctccatttaagcagtggtatctccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109819" stop="107788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109519" g_stop="109478" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="115" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108088" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="391" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E338186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109519" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCA</genome_strand>
        <mrna_strand>GAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293113" ref_strand="+" ref_description="SGN-E293113 [cLET-12-D1]">
      <seq>aaaatcgaaaccctaaggacctccgtcaccggcgacaatgggtatctctcgtgattctatgcacaagagacgtgccactggaggaaagcagaagacttggaggaagaagagaaagtatgagcttggcagacagcccgcaaacacaaagctggggccaaatgctaagactgctagaaggataagagtccgaggaggtaatgtgaagtggcgtgctttgagggtggatactgggaatttctcttggggtagcgaggctgttacaaggaagactcggctgttggatgtggtgtataacgcctctaacaatgagttggttcggacacaaaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109818" stop="107847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109518" g_stop="109478" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109361" g_stop="109289" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="114" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108363" g_stop="108147" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="331" r_length="217" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E293113" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109518" e_stop="109478"/>
          <exon e_start="109361" e_stop="109289"/>
          <exon e_start="108363" e_stop="108147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGGGTAATGGAATCTATTCATCATTTCATATTTTTAATTCTTCCATTTTATTCGTTTAATATGTATAATTGGAATAGCGAAGTGAATTTAATGGAGAAATTTACTGTGATATTGTATAGGTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAAGTATGTACAATTTTTTCATATTTAAGCAGCATGCTATCTTTTGTTAATTGTTAACGTGATCTGCTAGATTTAGCATGATTCTGGATTTAGAGTTTATTCAGATTGTTCGATGTATAGAGGTAGATCTGGAGGCTGCTCATTTTTTTAAAGTGATTCCTCACTTATGTGTTCGTATTGTGTTATTATTATGAAATATAATGAAATTTGTACATGCATCCAATTCTATGGAGTTTAAGTTATTGATGTGTACCTATATTGCTTGTTATCTCCAAAAATGTTGTAGAACCTGTTTAAGTGGACCTATGTTGATTGGAATCTCCAAATTTGCACTACTTTTGGGGGATTGACATTTTTGATTAACATAGATGTGGACATAACATAACAATTTAATTGGGTTTAGGGAAGTTTTATTAAGGAAGCAGCTTTGATGATGAAGTTTTGTTCTTTTGTGGTGATTCTCGGATTTTGTTGCTGAATGAGAAAGGAGTTAGTCTAACTAATGGGCCGATCCAAGAAGGGAAAATGTAGAAAAGAAAGTTTTTTTGGAGAACGAAACGTAGAAGAGAAATCAAAAAGCAAAGAAATTTAGCTGTAAGTGAAGAGAGGAAAAACATGAAAAGGGGATTGATATCTCATTGATCCTTTCTTAACAATGATGAATCTAACTGACTTAAGCCTATGCACTGGTCATTTTTCCCAGCTGATATATTACTGAAACTAACTAACAAGAAGGATACGACTAAAATGAAAAGTTACTGATGTGTACTACTGCAAATTTGGTTTGCTTCCTTCCTGATTATTGGGTAATCTCTCTTGATCAGGGATTTTGTTAATTTCTGATATAAAGTGGCTGATATGTATGAAAAATCTGGCTTTTTTGTGGTTACATTTTGAGATTGACTCCGTATCTCCTGCTTCTGTGAAGGTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTG</genome_strand>
        <mrna_strand>AAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG....................................................................................................................GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGGGCCAAATGCTAAGACTGCTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGGTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGGCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTCGGACACAAACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724313" ref_strand="+" ref_description="SGN-E724313 [FC23CH11]">
      <seq>cccatggggatcccatgatatattgtttccaagttgagagctttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcgcttcctggaggaattggtaccctcgacgaggtttttgagatcatggctttgattcaactcgaacgaattggctctcaacttcctgttcctttgcttctaatgaactatgattcattttataccaatttgttggagttcctcaatgattgtgagaagtggggaactgtctctaagggtgaagttgaatcattgtggaaaatttgtaccaataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109846" stop="114183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110146" g_stop="110404" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="276" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="405" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="590" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113883" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="882" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E724313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110146" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAAC</genome_strand>
        <mrna_strand>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309189" ref_strand="+" ref_description="SGN-E309189 [cLEZ-12-M5]">
      <seq>tttgttccctctattgaaaaaaatggggtttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacacgtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgcggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattatggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttgcgggttcaagataggtaaagaagcaggggaatggacagctaccaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109870" stop="113668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110170" g_stop="110404" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="364" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="548" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="0.98"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113600" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="557" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E309189" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110170" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTC</genome_strand>
        <mrna_strand>TTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACACGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGCGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTATGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTT-GCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACCAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731029" ref_strand="+" ref_description="SGN-E731029 [LA25DG05]">
      <seq>ctttgctgcagatagtaccatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcgcttcctggaggaattggtaccctcgacgaggtttttgagatcatggctttgattcaactcgaacgaattggctctcaacttcctgttcctttgcttctaatgaactatgattcattttataccaatttgttggagttcctcaatgattgtgagaagtggggaactgtctctaagggtgaagttgaatcattgtggaaaatttgtaccaataactcagaagctttggattatttggctgaattttatggtctttctactatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109898" stop="114234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110197" g_stop="110404" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="337" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="522" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113934" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="865" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E731029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110197" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</genome_strand>
        <mrna_strand>CTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242802" ref_strand="+" ref_description="SGN-E242802 [cLED-31-J7]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttctccgcaaggaaacacgggctggtggatgctgttgtgagatgtagaagctctgaaaggacagctgttatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109913" stop="113970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110213" g_stop="110404" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="506" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113670" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="585" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E242802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110213" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228130" ref_strand="+" ref_description="SGN-E228130 [cLED-2-H14]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttcatccatacttaccatcagagagttatcttacatgcaggtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109913" stop="113668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110213" g_stop="110404" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113366" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="506" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.485" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113592" g_stop="113598" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="513" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E228130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110213" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113366"/>
          <exon e_start="113592" e_stop="113598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAGGTAAACATAGCATCAAATGCATGGTTTTTCCTATGTTCTTAGGGGCCGTTTGGTTGTAAGCTGGTAACCAAGCACCATACTTGGTGTGCCGAATTTCATACATAACAATTAAAATGCTACCAAACATGTCATTCGTTTCTTACACGAATAATTCACTTCGTGACCAGCAGTCAAAGGGAGAGTCCCCTTATAGCTTCTTGAGTTCATCAACTGTTTTGCACTCAGGTTTTTC</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG.................................................................................................................................................................................................................................GTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242837" ref_strand="+" ref_description="SGN-E242837 [cLED-31-H14]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattagggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaggcttaatggatgctgccacacaaggtgctctacaagcagggaagcccgttggcgggttcaagataggtaaagaagcaggggaatggacagctacaaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109913" stop="113630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110213" g_stop="110404" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113330" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="470" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E242837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110213" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCA</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236628" ref_strand="+" ref_description="SGN-E236628 [cLED-13-D24]">
      <seq>accatttcaatggctaatatctttctaagaagctctcatcatcataagaaagatgtaaatttggggtcttgtatgagaaaggaaacatggggttttaatctttacttgccaaagctcaagtaccaatcaagaatctcattttgttgcaagaatgaatcaattgattttgaagaaagaacaagtcctaatgaggtcaagaaagagatagagcaatgctatgaattaatacacaggcttggtcgtggtgttgtgtatttaggatcttcaaggattggtcctggacatccacactacataaaaacctttgaattatggaacaagattgcaactctattagattgtacgacatggtccggggctgggccaagcttaatggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="109913" stop="113540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110213" g_stop="110404" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112694" g_stop="112822" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="321" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113182" g_stop="113240" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="380" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E236628" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110213" e_stop="110404"/>
          <exon e_start="112694" e_stop="112822"/>
          <exon e_start="113182" e_stop="113240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAGGTAATAGATTTTATGACCCATTTCTTGTTTTGTTGGGTAATATTAGCAGATGCTTATGCTTTGTTTTAGTCCCAATTTGTGTAGTAAAAAGTGGGTTGAAGTTTCCAACTTTGAAAATTGTCAGATGTGAAAAAGAGAAAATTCCCATTTAGTTATCTATTTAGCTGCTGCATATGCTTTGTTTTTGTCTGTTGTCATGTGATCAGGAGTTCACCGGTTCGAAGAGTAAGCCTTGGACCCTGTGCATAGCGGGAGCTTAGTGCACTGGGCGGCTCTTCCTTATATGCTTCATTTTGTCTCAGTTTGTGTAAATATAAGTAAATATTGGGTTTAGTTTTTAGCTTTGGGACTTGTCAAAAGGCAGAGAAGGAAAAAAAATCTATTTAGTTGCTGCAAAGGCTTTATTTTGTAGCAATTTGTGTAAATTTAAGTAGAAATTGGGTAAAAGTTTCAAACTTTGTAACCTGTCAAAACGAAAAGAAGAAACAAAAGGTTCTAACTTTGGATGTTCAATGTGATTTTTGGATTGATGCAAACTTGGATTTTGTTTTGAAAATTTCAAATTTTGAGGACATTATGATCTCATTTTACACAAAAAGATGCTAACTTGGGATTTTGACGTGGGAAATTTATAATTTATATATTCAAATCTCGTTCGTATTGTTGTTTGAGAACCCATGAGTTGAAGAGACTATGTGCCTGTTGTCTTGCAGAAAAGAAAGAACAAGTGAATCCTAACTGAGGTTTTCAGTACTAAGAAAGATTTATGCTGCAATGTTAGATTAGTGATTAAAGAAGCTGCTAGCAGTACAAGATTGGAGATACTCTCTACCTTCACGCTATTCGCTCACTTTGTCAAAAGGAAAAATCATACGAATTTATCTCATTTTCGGACTTATAAGAAAGAGATTTTATCTGTATCTTTGTGTAAGTACTTTAACGTGCACAGGTTGAGTGTGGAGTGGGATGATGACTTAAAAATTTCGAGTCTTCTGAGTGGTGATAGGAGTAGAAGATATCTGGAGGCCTTTGTAGTGTGGTGGCCCCTTTACTCTTATGTTGTAAAAGGGAAGTGCATATTTGAGATATCTAGATGCTTTAAGAAACTGCTTCAGTGCCAGCAAGAAACAAGCACCACTCTTGCTAGATCAAACAAGCGATTATTGTTCCTTTATTCGTAATTCCTCCCATGGACCACATTAGGATCTTATGCACCTATACCATTACTTTATGCTTAGGTTAAAAGATTTAATGATATCATCGCTAGTATTTAAATCAGCCATCAATTACAGGTAGCTTGAAAGGAATGGCATATAGGCTGGCATCGGATACTGTTAGCTAAGTACCTAGGGGGAGAAGTACATGAATGGAAGTTGTTCAAACTAGCATATTGGAAGAACCATTAGCTAAAATGACCATAGGCCTCATTGGTGTCCAGATAGAGTCCTATTTTTCTCAATTTCGAAAGTGTTTATTAAATTTATCCATCTTTTCAAGAACATGCTTCCTCTGAAATGAAGAAGGAAAACTGGAAAGAATTCAATGTGAAACACCACGATCATTTGTTTGTGGATTGGAGAAAGTATCTTCATTCTGTTTTCCCAAGTTATATTACATTGTTGATGCAGCTCACTTTGGACTAAATAACTAACAAGTGATATATCGCGACAATCAATCAGTTGTTTACGTCTAGCAGCATTCTTCCATTAGTTTACTTGCCCTTACCCATTCTATCCTCCAGAAAAAGGAAAGATTGAATAATGGCTTTTCTTCGTCTTTTCAATAAGACGAGTTCTGATTCCTTTTTACTATTTGGAAGCATTGCAAACGGTCAAGATTGTTGTTGTTTGCATCCTTTATCTTGGTTACATGATTTTCGGTTCAAAGGAATCTAGTACTCCCACCACCTTTTCTTCTTTAACGTTTGCTGATGTAAGACTAATTGACGCCTAACAGCTGAATAGCTCAGCATGGACTCAGCTTGATTAGACGTGAAGAACCTATATGAGAAGCTATGCACCATGTCTATATTTGACTGGTTAGTGGTGGAAGCTTGAGAATCACATGCTTCCAGTCAAGTGCTTCTTTAGTTTTTAGATATAGCAATCAGTCACTAAATTATGTTTGGTTACTTTCAATGACATTTACTCTGTGTGAATTGTTAAATATCTGAGTTTTTAACACACAGTTTTCTTTTAGATGCATTGCTGCTTTACTTTTATTGCATCTCGGTTACACAAGATATCTGGTTTTGAGGTTTTTGAGACTAACAATCTGTTGAAAATGCAGGTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAGGTTAGTCAACTTTCTCAAAGTTTGGGTGAAGTAATAGAAAAAGAAAGATGAAGTAGCTTGTATAAAAAAGTACTCCCTCCGTTTCGATTTTCTCTGATTTTGACTTACGCGGAGTTCTAAGAAAGTGAAAAAGGACTTTCGAATCATGTGGTCTTAAACTAAAGATATGTAGAATGTACCATGTCCTTCAATGTTTTGGTGAATATGCCTCGTGAATTAATGAGTTACCAAAAAAGAAAAGACATTCTTTTTTAGACGGTCTAAAAGGAATGTAAGACAAACAAATTAAAACGGAGGACATAATACTATTCGGAGAAGAATCTGTGACTATTGTTTTCTAAATACTACTTGTTCGGCAGATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGC</genome_strand>
        <mrna_strand>ACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTATGGAACAAG.......................................................................................................................................................................................................................................................................................................................................................................ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAAGCTTAATGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688064" ref_strand="-" ref_description="SGN-E688064 [T3_tus_85_G20]">
      <seq>tttttttttttttttttaagaaacaattcaccatgaaaatggatatgaaccttcaaggagaaaattatagtcccttgcaaaattgttttgtattaataaaagagacacagcaagaattatcactcttaaagcaggataaaggtaagtcgattacaatttacaaaacttgataatagtgccaaatggttgaaaacgacattttttttgcatttcttcactatctaacgggagccatgtcgacgatttttaagggactggcagaagaatgaaaaggattccttgagctcatttggtagaggtagagataaaggagcaagcacaccaaattgctgtctactgttgacattcatgtgagatgtaagagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="+" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1424" stop="120574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119692" g_stop="119707" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119708" i_stop="119924" i_length="217">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119925" g_stop="120274" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="367" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="+" ref_id="SGN-E688064" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119692" e_stop="119707"/>
          <exon e_start="119925" e_stop="120274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTTAATATTTTATACCCTTTAAGCTCCGAACTCCAATATTCAGGCAGCATGCATTATAATTTTCAGGTCCAATACTAAGCATTTCAAGTGATATGCCAGATTTTGAGTAATCTTTCACTCTAATTTTTAAACATACTTCGATTTGTGTAAACACCAAATGCAGATAAGTCGAGGAACAAGAGTACCACTAGGGTAAATTAACGGGGTACTCTTTCAACATCACAAGCCTAAGAAACAATTCACCATGAAAATGGATATGAACCTTCAAGGAGAAAATTATAGTCCCTTGCAAAATTGTTTTGTATTAATAAAAGAGACACAGCAAGAATTATCACTCTTAAAGCAGGATAAAGGTAAGTCGATTACAATTTACAAAACTTGATAATAGTGCCAAATGGTTGAAAACGACA-TTTTTTTGCATTTCTTCACTATCTAACGGGAGCCATGTCGACGATTTTTAAGGGACTGGCAGAAGAATGAAAAGGATTCCTTGAGCTCATTTGGTAGAGGTAGAGATAAAGGAGCAAGCACACCAAATTGCTGTCTACTGTTGACATTCATGTGAGATGTAAGAGCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................TAAGAAACAATTCACCATGAAAATGGATATGAACCTTCAAGGAGAAAATTATAGTCCCTTGCAAAATTGTTTTGTATTAATAAAAGAGACACAGCAAGAATTATCACTCTTAAAGCAGGATAAAGGTAAGTCGATTACAATTTACAAAACTTGATAATAGTGCCAAATGGTTGAAAACGACATTTTTTTTGCATTTCTTCACTATCTAACGGGAGCCATGTCGACGATTTTTAAGGGACTGGCAGAAGAATGAAAAGGATTCCTTGAGCTCATTTGGTAGAGGTAGAGATAAAGGAGCAAGCACACCAAATTGCTGTCTACTGTTGACATTCATGTGAGATGTAAGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356877" ref_strand="+" ref_description="SGN-E356877 [cTOS-22-E14]">
      <seq>tcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagtgataattcttgctgtgtctcttttattaatacaaaacaattttgcaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="122152" stop="119679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121852" g_stop="121790" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="136" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="190" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120361" g_stop="119975" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="577" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E356877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121852" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="119975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTAT</genome_strand>
        <mrna_strand>TCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351201" ref_strand="+" ref_description="SGN-E351201 [cTOS-6-E20]">
      <seq>caggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgctttaagagtgataattcttgctgtgtctcttttattaatacaaaacaattttgcaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="122151" stop="119679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121851" g_stop="121790" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="135" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120361" g_stop="119979" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="572" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E351201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121851" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="119979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGA</genome_strand>
        <mrna_strand>CAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733731" ref_strand="+" ref_description="SGN-E733731 [LB10DB10]">
      <seq>cgcttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcactattatcaagttttgtaaattgtaatcgacttacctttatcctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123431" stop="119740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123133" g_stop="122882" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121854" g_stop="121790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="317" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="390" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120361" g_stop="120028" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="778" r_length="334" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E733731" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123133" e_stop="122882"/>
          <exon e_start="121854" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="120028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGA</genome_strand>
        <mrna_strand>CGCTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343691" ref_strand="+" ref_description="SGN-E343691 [cTOF-20-M12]">
      <seq>aaatatcttagaacttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagacagcaatttggtgtgcttgctcctttatctctacctctaccaaatgagctcaaggaatccttttcattcttctgccagtcccttaaaaatcgtcgacatggctcccgttagatagtgaagaaatgcaaaaaaatgtcgttttcaaccatttggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123444" stop="119784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123144" g_stop="122882" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121854" g_stop="121790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="328" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="401" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="455" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120361" g_stop="120084" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="733" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E343691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123144" e_stop="122882"/>
          <exon e_start="121854" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="120084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCAC</genome_strand>
        <mrna_strand>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286353" ref_strand="+" ref_description="SGN-E286353 [cLES-11-B3]">
      <seq>tttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagtagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123429" stop="119938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123129" g_stop="122882" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121854" g_stop="121790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="313" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="386" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120361" g_stop="120238" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="564" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E286353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123129" e_stop="122882"/>
          <exon e_start="121854" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="120238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACA</genome_strand>
        <mrna_strand>TTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265157" ref_strand="+" ref_description="SGN-E265157 [cLEI-2-G6]">
      <seq>aacttttagattgacaaaacttagggtttagcatttggaaattgagaatggcgacgccgacgacctcaccgaactctgaatccgattccgacgttgaaacaagtccggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgttaaccactgcgattccgtctactccagtcgtatgcctccttaggttcgccggtgactctgctgctggagccttcatgggatccattttcggatacggctcaggattaataaagaagaaaggttttaaaggatcctttggggaagcaggagcttcggcaaagacttttgcagttttatcaggagttcatagtttagttgtctgtttcttgaagagaatacggggaaaagatgatgttatcaatgctggagtagctggatgttgcactggtcttgccctaagttttccaggtgcacctcaggctctactacagagttgtctcacctttggggcattttctttcatcatcgaaggtcttaacaagcagcaacctgcattagctcttacatctcacatgaatgtcaacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123433" stop="119942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123133" g_stop="122882" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121854" g_stop="121790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="317" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="390" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="444" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120361" g_stop="120242" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="564" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E265157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123133" e_stop="122882"/>
          <exon e_start="121854" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="120242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTA</genome_strand>
        <mrna_strand>AACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG..............................................................................................................................ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG.........................................................................TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276297" ref_strand="+" ref_description="SGN-E276297 [cLEN-21-O2]">
      <seq>actttgagattgacaaaacttagggtttagcatttggaaattgacaatggcgacgccgacgacctcgccgaactctgaatccgattccgacggtgagacaagtacggtggcgaacccgtcacccggacagaatcctcaattcacctctgatgcgtcaaccactgcgattccgtctactccagtcgtatgcctgcttaggttcgccggtgactctgctgctggagccttcatgggatccatttctgatacggctgagggttgataaatacgaaaggttttaaaggatcctttggggaagcaggagcttccgcaaagactttggcagttttatcaggagttcatagattagtcgactgtggctagaagagagtacggggaaaagatgatgttctcaatgctggagtagctggatgtagcactggtcttgccctaagttttccaggtgcacctcaggctctactacagaggtgtctcacctttggggcattatctttcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123432" stop="120004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123132" g_stop="122882" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121854" g_stop="121790" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="315" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121663" g_stop="121591" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="388" r_length="73" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73">
            <donor d_prob="0.358" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121517" g_stop="121464" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="442" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120361" g_stop="120304" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="500" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E276297" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123132" e_stop="122882"/>
          <exon e_start="121854" e_stop="121790"/>
          <exon e_start="121663" e_stop="121591"/>
          <exon e_start="121517" e_stop="121464"/>
          <exon e_start="120361" e_stop="120304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACGGTAATTGTTTATGCAATTTTCTCCCTTAATCTGTCTATTATCGACGAGTTAATAGTTTGAATTTGGTTAGTTTGTTAGTTCAGCTGGATTTTTTGTGGAAATAGCTGAAATGAGTTACTTCTGATTGTTATTTTCGTTTGTTTTCTATACGGAGTTATCTAGAACTTATTCTTTTGTTGTTTTATGCATTTTCCTCCGCCAATATGTCTATTGTCGACTCGTTAATAGGTGCAATTTGGTTAGTTTGTTAGTTCAGCTGAATTTTTTGTGGAATAGTTGAAATGAGTTACTTCTGATTGTTAATTTTGGGATTGTGTTCTCTACGGAGTTATATGAAGCTTATGTTTTGTTGTTTTATGCATTTGACAACCGATGTCTTTTACCAGTTGTAGATATTCGTAGTAGAATTGTGTATCAACCTGTTACCTGTGTAGTGCTGCAGCTGACCTGATATAGCAGTTTTATGTTCACCTTCACCAGTTTGTTTGTTGGAGTCTCACAGTCTCTCGGGAGACGAATCTGTGCTTTTGCAAATTATTATATTTGGCTCTATTGCTATAGTCTGTTTCTCACTCGTGTATGATTGTTGGGGGGTGTACATGAACTATAGTTGTGTATATTAGTACATTATGAGTGTGACAGGAGGTGAAGGCTTCTCTGAATTCGACTACTGATTTCTCGTATCTTCTTCATCCTTTATTTTGTTTGATGACTCACTACAATAACTGAGTTGTGCGTTATCCTTTTATGGTAACCTCTAGTTTCTCCAAGTGTAATGAGCGTCAACCGCCCTATATTTTGAAGTTGTTTGTTATTTCTTCTGTTTGTTTGTCTAGTCCATATTTCCTTTAACAAATAACATCCTTCTGTTGCTACTGCCGACCTTGCATTTCGGGGAACCCTTCTTTCAATACTTTGCTTCTATAAGATTAAATAGCTTCTGGGGATCATAAATGGAATTCTTTGAGTGCAAGGGAAACATTATAAGTTGGTGATGTGCTCAATTTTGCTCAATGTGCTGTTTCAGGCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAGGTATTTCAATCTTTGATCAATGCCTTAATGATATTTTTGGCAAACTACAGTATAACCACTGTTACTGCTTCCCTCTTTTAATATGTCTAATTGTGACTTGGTTCATTTCCCCTTTCTGTTGTCTAGACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATGGTATGACACACACTTTGAACAGCCAGATTCGGAAACATCTTTTATTTTCATTGACTTTCTCTTCTTTCTACAGTTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAGGTACTTCCAACATTTCCCACTTCATAACATAATTATCAGGACTATACCCTCCATTTTTGATTCTCAATTCCTTGAAGTCTTCTTAATTGCCATCTTACGCATTGATTAAAATGATGTTAGTACCCAATCAAGTGTAGATAGAAACAAGTACTGTCATGGTTACACATGTTTGCTGTGTTAGTGTGCCCCTTCAAACCTGAATAAAGCCATGAAGTCTAATTGTATTCATTTGATAATTGTGCAAATGGTGTAAACTTCTGTGATTATTATCGTTAGCTTAGTGTCTTCTCTAACTATCATTGTCAGTCCCAAACCTACAGTCCTTCTTTGCGGCAATATCTGAATTGGTTGGGAGAAAGTAGCATACGACTTACATGACAAATTTAAGGAGGTTTTCAGGTAGTTGTGTGGTGGTTATGGGGCATGTCATGGAAAAATTGTGCTTAACTCATTTTTTAAGAGCACAATTTAGCCTGCTAGAGCTAATAAGACCTACACTTGATGCATAAATGGAGAATTTTTAGGGCTGCAAATAATAGCTTCGGATTCTGGTTAAATAAGGTGGGAATCTGGGAGATATAAAGATGTTACCAGTCTCACCCCCATAATGAATTGGAAAAATGTGTTCGGATTAAGAGAATATGAAAGCAAGGATGTGAAAAAGTAAAGATGAGCAGGAAGGGGTGGGTGTTACAACTGTGTCTTTCCAACATGTAGATTTTTTCCAGCATGTCATTATCGTACCCATGACTAAACTCAAAAAGCAAATAGCTAGATTGGGTGATATTCATGTATTTCAACAATGTCGTGAAGTGCATATAAGTTTCAGTTATGAATTTAAATTCTCCTTATCTGCTTTATAGAAGCATCTTTCTTTGTTTTCTTTGAGTTCTTGCTTCTTGTTAAATTATATGCAAGTTCATGAAGTGCTGCTCATAGTAAGGTTTCTAATTTTCTATATTCGAAATTCTTAACCTCATTCTCGTTTAACTTGTCTAGTCATTTTTCTCTCCTCATTCAATTGATTGCGCTAGAATGTTTGTCATTCCTTATAGTGAACTAGAGTTATAATTAGTCTTTCTTTGTTGATGATGCGTCTCAGGTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCAT</genome_strand>
        <mrna_strand>ACTTTGAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGACAATGGCGACGCCGACGACCTCGCCGAACTCTGAATCCGATTCCGACGGTGAGACAAGTACGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTCAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTGCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCA-TTTCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGGGTTGATAAATACGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCCGCAAAG..............................................................................................................................ACTTTGGCAGTTTTATCAGGAGTTCATAGATTAGTCGACTGTGGCTAGAAGAGAGTACGGGGAAAAGATGATG.........................................................................TTCTCAATGCTGGAGTAGCTGGATGTAGCACTGGTCTTGCCCTAAGTTTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCAGGCTCTACTACAGAGGTGTCTCACCTTTGGGGCATTATCTTTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747199" ref_strand="+" ref_description="SGN-E747199 [GI|27462171]">
      <seq>cttagttagaatgtcagaaaacagattcttaggcaacatttctgcgtcttcgttccgaaatctacttccaaaatcagtttcaactaagaaaaagttgagttcaagtagatttaagcataaaatgaacagtgaaaatgttgctcctatagatcccaacgttcagatcagtgatccaccgttgttacctacgagttcgatacttaaaaaaaccgtcttgaagacgattgatagtgatgtatcgacagaactcaccagatctgttgcacaggaacaaacatcagaagctcctgatccaccagttaaggttgttgcaaggattagacctgctaatggtattgagagtggaacccaagcggttcgcaaagcttctgatacctcagtgtgtgttgctgatagaaagtttgactttgacatggtttttggttcaaattcgaatcaggaagatgtatttcaatcggttggtgcccctttagttaaggatgcattggcaggttacaacacttctctcttagcttatggacagactggaagtggcaagacttatacaatgtggggacctcctagttccattgttgaagttccatcacctaatggtcttcaaggcattgtgccgcgcatttttcagacattgttttctagtatacaaaaagagcaagagaactctgaaggtaaacagataaattaccagtgtcgttgctcgttcctagagatatatgatgaacacattggggatctacttgatcctacacagagaaacttaaagataatggatgatccaagagttggattctatgttgagaacataactgaggaatatgtgtctacctacgaggatgtatcacaaatgttgattaagggtctttcaagtagaaaagttggatcaacgagcatcaattcgaagagttctaggtcccatattgtttttacctgcgtcattgagtcctggtgcaaggagtcctcatcaacgtgttttggtagctcaaagatgagcagaatgagccttgttgatcttgctggatttgacaaaaatatacctgatgatgccggtaaacagcttgttaaggaagggaagtatgtaaagaagtccacatcactgctcgggcatttggttaatgtcctctctgaaaggagtcagtccaggaaacttgaggatgtttcgtacagcagttccactttgactcatttaatgagagaatcacttggtgggaatgctaaactctccgtcatatgtgctatcagcccagaaaacaagcataatagtgaaacagtaagcactctgagatttgggaaacgggttaaactcacaccaaatgagccattggtaaatgaaataacagaagacgatgttaatggcctgagtgatcagattcgccaattgaaggaagagcttataagagctcggtcaagtgcaagcatttcagtcggaagcaactatggatccttcagaggaccaaatgtacgtgaaagtttgaatcagttgagagtgagccttaaccgttcactcatcttacctgacatatataatgagcgtgaagaagaagaggttcacataaatgaggatgatataaaagaactacagctccagatcaataacttacgtggttcacgtggaaataactcaaactctctcaagtattcatctggagaaagtgaacactatctcagctgttcagaagaaagtgaaggtgaagaaattaactcagatgagatactggaggagacccttgatgatgctgaccaagagatggaaacgatgcagcctgaatactgtagcagcatctcaataggcccatcccgccattctgctgatcttcctggcccggtgttatctgagtccccaaagtttcggaacatgcagaggaagagcttaattatctccggtgaagataatattcaaaggtccttcaaaagttctgaattggctttcctggcacagaaaccagaccttgtccagtcttctttgaggtccagcagaatatttcctgggccaactgaatccttggctgccagtctacatagaggactagagatcattgattatcaccaaaggaattccgcatcaaataaatctttggtttccttctcttttgaacatttggcagtgaacccaagcccaatgtcaaatggtaaggccaatgcttctattcaaacatcatcggaagagggacaatcttctccttttgtagccgctacattcctgtgtccaaagtgcaagacgaaagcaacatcctctagtgttgttaaggatagcactgggacatggatggtttccatggaagggacaagtacggatcaagattcggagaaagttttgttccaagctctagagagagagaagcagcttgaaagtgtatgcaaggatcaagcagacaaaattgagcagctaaaccaacgactagcccgctgtaagtgcacacaagaacagagttctttagttgattgtggcaaggatgtcgttgatctccacgacaatgagaatcaagcttcaataatctatcagaatgggagtcaatcacccaacatcccaaagctcctgaaatgggacgatgaaagtcctgagcctgaagctgcaggagagaagtatgaaactaaagaaattcagggcaatgtcgaaaacagtggcgggaaaaaaatgtttgatatggctgagagagaagcactacttaaagaaattggaggcctaagggcccaattgaagtcagatggagcctccacaaacaaatcacttgaaagaaccagatcctctttgttagcacaatcaatgcagctgagaaaaagtggtgtatatgctactacgggttctggtgaagaacttgagaaggaaagagaaagatggactgagatggaaagtgagtggatttgtctaactgatgagcttagaattgatcttgaggcttatcgccagcgtgcagaaaaggtggcaatggaattaatgttggagaagaaatgcacggatgagttggatgatgccctcaaaagatccgtctttgggcaagccagaataattgagcattacgcggaattacaggagaagtacaacgacttagctgagaagcataagttgatcttgcaagggatacaagatgtgaaaaatgctgcagcaaaagcaggaaagaaaggccatggtgctcgtttcgccaagtctctcgctgcagagctgtcagctttgagagtggaaagggaaagagagagggaaatgctgaaaaaggagaataaaagcttgagagttcaacttaaagacactgctgaagctgttcatgcagccggagaacttcttgttagattgagagaagcggaggaaacagcttcacttgctgaggagaactttacacaatcaaaggaagagaatgagagattgaagaagcaaatagagaagctgaagagaaaacataagatggagatgataacaatgaaacagtatcttgctgaaagccgattgccagaagcagcgttgagaccgcctatttacaggcaagactctgatgtagcaaacaatgacaacaacaacaccatccaacattctgagtatgatgatgatcaatcatggagagcagaatttggcgctatttatcaagaacacatatgagccatgtttgattgaactatggaaacacgtgaagaccctgctcgggactttgctgaaaaaaacctgctcatcttgatcacaccttagtgttattcagggatgaattggctgtattcttattgattttatcattcttttgaaacttgattgaccagatttgacatttgttgtgagctgtttcttcagcttgttaataataatgcttatgtatcctaaaaagtcattcaactttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0184E04-Y1mfv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0184E04.2" temp_strand="-" temp_description="C07HBa0184E04.2  AC212637.2 htgs_phase:2 submitted_to_sgn_as:gi|167832400|gb|AC212637.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0184E04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="130215" stop="1424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129915" g_stop="129610" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129609" i_stop="129371" i_length="239">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129370" g_stop="129236" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="439" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129235" i_stop="128761" i_length="475">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128760" g_stop="128677" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="523" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128676" i_stop="128594" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128593" g_stop="128468" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="649" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128467" i_stop="128385" i_length="83">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.682" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128384" g_stop="128325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="709" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128324" i_stop="128242" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128241" g_stop="128188" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="763" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="128187" i_stop="128092" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="128091" g_stop="127999" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="856" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="127998" i_stop="127868" i_length="131">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="127867" g_stop="127772" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="952" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="127771" i_stop="127591" i_length="181">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="127590" g_stop="127442" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1101" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="127441" i_stop="127102" i_length="340">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="127101" g_stop="126952" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1251" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="126951" i_stop="126731" i_length="221">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="126730" g_stop="126601" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1381" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="126600" i_stop="126510" i_length="91">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="126509" g_stop="125595" g_length="915"/>
          <reference_exon_boundary r_type="cDNA" r_start="1382" r_stop="2296" r_length="915" r_score="0.992"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="125594" i_stop="125502" i_length="93">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="125501" g_stop="125403" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="2297" r_stop="2395" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="125402" i_stop="125315" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="125314" g_stop="125180" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="2396" r_stop="2530" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="125179" i_stop="125091" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="125090" g_stop="124302" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="2531" r_stop="3319" r_length="789" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="124301" i_stop="124217" i_length="85">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="124216" g_stop="123706" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="3320" r_stop="3830" r_length="511" r_score="0.986"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="123705" i_stop="123556" i_length="150">
            <donor d_prob="0.900" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="123555" g_stop="123545" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="3831" r_stop="3841" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0184E04.2" gen_strand="-" ref_id="SGN-E747199" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>3843</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0184E04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129915" e_stop="129610"/>
          <exon e_start="129370" e_stop="129236"/>
          <exon e_start="128760" e_stop="128677"/>
          <exon e_start="128593" e_stop="128468"/>
          <exon e_start="128384" e_stop="128325"/>
          <exon e_start="128241" e_stop="128188"/>
          <exon e_start="128091" e_stop="127999"/>
          <exon e_start="127867" e_stop="127772"/>
          <exon e_start="127590" e_stop="127442"/>
          <exon e_start="127101" e_stop="126952"/>
          <exon e_start="126730" e_stop="126601"/>
          <exon e_start="126509" e_stop="125595"/>
          <exon e_start="125501" e_stop="125403"/>
          <exon e_start="125314" e_stop="125180"/>
          <exon e_start="125090" e_stop="124302"/>
          <exon e_start="124216" e_stop="123706"/>
          <exon e_start="123555" e_stop="123545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTCAGAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAGGTAAAATGATAAATCTTTGCTGATTTTAGTTAGGTGGTCGAGGAAAGAGGTGAATTCAGGATATAAACTTAATACTGATATAATTATGGGTTCAAATCTAGTATTTATTGAGATTTCAATAGGGTTTTATGGACTGTGGGTTTGTCTATTTCCTTGTTTTGCTAAATTTCTTCCATTTTTGTTGTGCTTTTTGAGCTATGAATGATCTGTAATTGCTCTGTATGTTGGGTGTTTGACAGGTTGTTGCAAGGATTAAACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTAACTTTGACATGGTTTTTGGTTCAAATTCGAATCAGGTTGGTAAATTTAACTCCCAAGTTTCTGCCTTTTCAAGCTTTTTTGAATTAATTGTGCTTTTAGATGGTGCTTAGTTCTTTTGGTGTCCACAGTCCTTTTCATGTTAGTTTCTGATGTTCGTAATTAAGGAGGGGGGACTTTGCTTAGAGTTGAGCGATGGAAGACAATAGAGGCAATAGCTTATAGTGACTAGTTAGAATTGATTTAATCGTTGTTACGCTTACATTAGGTCAAATAGAGGTAAGTGAGTGATCTAGACAGAATTATTAATATATAGAGAAGTATTAAATATACCTGAAGAGATCCAAACAGAATTATTAATATATAGAGGGATACATATAGTCCACCCCTACTAGTTTGGATCAAGGCTTCTTTGGTTTCATTAAAAAGGGTCTGATTTGTTGAATGCTGATGTTACAAGGTTCATATAATAGATGGATTTTTCTTATTTAAGCTGTTTTCTCATGATAACAGGAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAGGTTAGTTTTACTTGTAATGTTTCATTTTCATTGTGTCACAATAAATCTGTATCTGATGGCTGAAGTGATTCTTTTGGTGATAGACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAAGTAAGTTCCTTCTCCATTTAAAAGTTAGAACTGAAGACTGTCAAGACATTTCTGATATTTAGATAATTTCCTTGATTGATCAGGAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAGGTATGTATTCTAAATATTTACCCTTGCTCACATATGATGCATACTCGTGCCAAGTCTAATTATGTCACACTTCTTCTTTCCAGATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAGGTTAGTTGCAAATCTTGGAACACGATATTGTTCTAGGCGCTATTCACTTTATGAAAAAACAGAATGCTGAAGATTCGTCCTTTTTGGTTATTCCAGATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAGGTGCACAAACGCTTTTCCTATCATAATACTTTGAACTTTCTAGTAGTTCTGTCAATGCAATAAAATGAGATAAGAATGCTTTAGCTTTCACTTATCTTATTGTTTCTTATTCTTTTGCATTTGAATTGTAGGGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAGGTATCTTCCAACTATGAAATCTGGTTTTTTGTGTGTTTTGTCAGGAAGAAATTTTATACATTCATCTTCTTATCTAACCCCGGAGTTCATATTACCGTCTAATTTCTCACTATAAAGTTTTATCGTCATAGTTGAAGACCTTTAATCTTTTCAAGTGTCTAATTAAACAATATTACTTCAGGAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGGGTATGATTTATGCATACATTTTACTGTTTGTTGTATATTGTAGTTTTTTGTCTTTGCGCTCAAACTTTCTTACATATTATATTGCCAACATTGTTGCCTTAAGTTTCAAAATGTTTGCATTCTCAAAGTGATGCCTTCATGCCGTATGCTAAGCCAAAAGTGTAGGCAGAGGACTTGATGAGTGACTCTAAGGAAGGAGTTAATAGTCTGTTCTGTTCATGAATTAGCTCATAAATGTTAAATCTACTTTAAAAAATGGCCATATTTTCTGTGAAATCTATTTATCATTGATGTATAACACAAGTGTTACTCTAGTTAATTGTTTCTTAAACTGGTGCAGGCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAAGTATTTCCCTTTTCAACTCGAGATGCTTCATGCTTTTCAATATTACGGAAATTCTGTTACCTATGACGTGCATGAAAAACTAGCACATTAGATGGTTAAAATTGTAAATGACTTTGGTGTAAGTGAACCTGAATGAGGGTCATATCATCTGGACCAACTTGCATACGTAACATCAGTTTCTTCTCTTTTAAATGTCACTAATTCGAGGAACATTTATGCAGGCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAGGTACTTTCACTTGTCTCACTGGGGCAACTGCTCATCTGATTCGTTTAGAGCATAAACTTTATCTGACTTTATGCTTTTATATTGCTTACAGGAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATAGATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGTTCCTCCAAAAGTTCTGAATTGCCTTCCCTGCCACAGAAACAAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAAGTAAGTATGGAAATGGGTGGTTGTCTTTCTTTTATTAGCTAGATCATTCATTGTGAATGTTTAAGTTGAATGTTATTCTACCTTCTTTGGCAGGATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGAGTAAGAGTTCTTTCACTCTAGTAATTTGTTTAAATATGACAGAAAATTACCTCAAGTTTGATATTAATTATGAATCTTGTCCTTGCAGCTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAGGTGAGCGCCGTTTTTAGCTTTCTTTTGTTAGAGTTGAGATTTTTCCTATTTTTTCTTATTATTTACTTGCGCCTTTTGGTTTGCTTCAGCTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAGGTAATTTTGCGTTTAAACATGGACACACACCGGTTTATACGTTAACTCATTGTTTTGATTAAACATTTCTTTACTTCTTTTACAGGAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTATGCACAAGTATGTATTCTTTCTATAATGCGAGATGAATTGGACGTCAGCCTGAAGAGCGCTTTACTTAGCGCTAAAAACTAAAATGAAACTTTTTCTTTGATACTTAGAGCAAAATTGAGTAACTTTTCTGCTATAAAAATAGCTTAAGTAATTAACTGCAACAAAATAAAA</genome_strand>
        <mrna_strand>CTTAGTT-AG-AATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAG...............................................................................................................................................................................................................................................GTTGTTGCAAGGATTAGACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTGACTTTGACATGGTTTTTGGTTCAAATTCGAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAG...................................................................................ACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAA...................................................................................GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG...................................................................................ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG................................................................................................ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAG...................................................................................................................................GGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG.....................................................................................................................................................................................GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGG....................................................................................................................................................................................................................................................................................................................................................GCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAA.............................................................................................................................................................................................................................GCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAG...........................................................................................GAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATATATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGGTCCTTCAAAAGTTCTGAATTGGCTTTCCTGGCACAGAAACCAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAA.............................................................................................GATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGA........................................................................................CTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAG.........................................................................................CTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAG.....................................................................................GAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTAAAAAAAAAAAA......................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>205</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2996" PGL_stop="6654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2996" e_stop="3171"/>
            <exon e_start="4790" e_stop="6337"/>
            <exon e_start="6635" e_stop="6654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.287" acc_prob="0.983" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.762" e_score="0.987"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2996" e_stop="3171" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.287" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="4790" e_stop="6337" e_length="1548"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.762">
            <gDNA_intron_boundary i_start="6338" i_stop="6634" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="6635" e_stop="6654" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2996" stop="3171"/>
              <exon start="4790" stop="5330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2997" stop="3171"/>
              <exon start="4790" stop="4840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3004" stop="3171"/>
              <exon start="4790" stop="5465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3037" stop="3171"/>
              <exon start="4790" stop="5291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3048" stop="3171"/>
              <exon start="4790" stop="5210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3054" stop="3171"/>
              <exon start="4790" stop="5418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3071" stop="3171"/>
              <exon start="4790" stop="5477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3134" stop="3171"/>
              <exon start="4790" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4792" stop="5431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4802" stop="5715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4846" stop="5599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4849" stop="5218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4876" stop="5726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="5425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5115" stop="5657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5117" stop="5806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5122" stop="5582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5155" stop="5745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5197" stop="6008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5203" stop="5892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5231" stop="5746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5385" stop="6337"/>
              <exon start="6635" stop="6654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5470" stop="6208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5593" stop="6220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5742" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5754" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5833" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG : GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATA : GCACACATTTCAGAAAAATA</gDNA_template>
            <first_frame> D  F  L  T  N  F  Q  I  H  Y  H  H  S  C  *  F  Y  S  L  Q  I  T  I  I  L  I  L  C  F  V  L  R  V  G  F  S  S  F  S  I  K  D  H  S  F  G  *  I  F  G  L  I  I  R  D  S  V  C  W :   L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  * :   H  T  F  Q  K  N  </first_frame>
            <second_frame>  T  F  *  Q  T  S  K  S  T  I  I  I  L  V  D  F  I  L  C  K  S  Q  L  F  S  S  F  A  S  F  *  E  L  G  F  L  H  F  P  *  K  I  T  L  L  G  R  F  L  A  *  *  S  E  T  Q  S  V   : G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N   : S  T  H  F  R  K  I </second_frame>
            <third_frame>   L  S  D  K  L  P  N  P  L  S  S  F  L  L  I  L  F  S  A  N  H  N  Y  S  H  P  L  L  R  F  K  S  W  V  F  F  I  F  H  K  R  S  L  F  W  V  D  F  W  L  D  N  Q  R  L  S  L  L  :  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  :  A  H  I  S  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5260" stop="6105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2998" stop="3171"/>
                    <exon start="4790" stop="5410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDKLPNPLSSFLLILFSANHNYSHPLLRFKSWVFFIFHKRSLFWVDFWLDNQRLSLLVIFVVSFMDSPQSVVSPFKSSSVFADSEKQSNEFFSKNASGLSRGISAHREDVEICNMEDFIGVLDVYVHQARDIHNICIYHKQDVYAKLCLTSDPESAVSTQTINGGGKSPVFNENLKLNVRTIKCSVKCEIWMMSRVRNYLEDQLLGFALVPLSEILMKNGKVEKEFSPFRRLISFTPQQDLCTCPFLTMELHLKLLKFLLFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2996" e_stop="3171"/>
            <exon e_start="4790" e_stop="6343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.287" acc_prob="0.983" e_score="0.994"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2996" e_stop="3171" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.287" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3172" i_stop="4789" i_length="1618"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="4790" e_stop="6343" e_length="1554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2996" stop="3171"/>
              <exon start="4790" stop="5330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2997" stop="3171"/>
              <exon start="4790" stop="4840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3004" stop="3171"/>
              <exon start="4790" stop="5465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3037" stop="3171"/>
              <exon start="4790" stop="5291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3048" stop="3171"/>
              <exon start="4790" stop="5210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3054" stop="3171"/>
              <exon start="4790" stop="5418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3071" stop="3171"/>
              <exon start="4790" stop="5477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3134" stop="3171"/>
              <exon start="4790" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4792" stop="5431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4802" stop="5715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4846" stop="5599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4849" stop="5218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4876" stop="5726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="5425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5115" stop="5657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5117" stop="5806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5122" stop="5582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5155" stop="5745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5197" stop="6008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5203" stop="5892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5231" stop="5746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5470" stop="6208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5593" stop="6220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5714" stop="6343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5742" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5754" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5833" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTTCTGACAAACTTCCAAATCCACTATCATCATTCTTGTTGATTTTATTCTCTGCAAATCACAATTATTCTCATCCTTTGCTTCGTTTTAAGAGTTGGGTTTTCTTCATTTTCCATAAAAGATCACTCTTTTGGGTAGATTTTTGGCTTGATAATCAGAGACTCAGTCTGTTG : GTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATAATTTTG</gDNA_template>
            <first_frame> D  F  L  T  N  F  Q  I  H  Y  H  H  S  C  *  F  Y  S  L  Q  I  T  I  I  L  I  L  C  F  V  L  R  V  G  F  S  S  F  S  I  K  D  H  S  F  G  *  I  F  G  L  I  I  R  D  S  V  C  W :   L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  *  F   </first_frame>
            <second_frame>  T  F  *  Q  T  S  K  S  T  I  I  I  L  V  D  F  I  L  C  K  S  Q  L  F  S  S  F  A  S  F  *  E  L  G  F  L  H  F  P  *  K  I  T  L  L  G  R  F  L  A  *  *  S  E  T  Q  S  V   : G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N  N  F  </second_frame>
            <third_frame>   L  S  D  K  L  P  N  P  L  S  S  F  L  L  I  L  F  S  A  N  H  N  Y  S  H  P  L  L  R  F  K  S  W  V  F  F  I  F  H  K  R  S  L  F  W  V  D  F  W  L  D  N  Q  R  L  S  L  L  :  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5260" stop="6105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2998" stop="3171"/>
                    <exon start="4790" stop="5410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSDKLPNPLSSFLLILFSANHNYSHPLLRFKSWVFFIFHKRSLFWVDFWLDNQRLSLLVIFVVSFMDSPQSVVSPFKSSSVFADSEKQSNEFFSKNASGLSRGISAHREDVEICNMEDFIGVLDVYVHQARDIHNICIYHKQDVYAKLCLTSDPESAVSTQTINGGGKSPVFNENLKLNVRTIKCSVKCEIWMMSRVRNYLEDQLLGFALVPLSEILMKNGKVEKEFSPFRRLISFTPQQDLCTCPFLTMELHLKLLKFLLFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4691" e_stop="6337"/>
            <exon e_start="6635" e_stop="6654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.762" e_score="0.987"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="4691" e_stop="6337" e_length="1647"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.762">
            <gDNA_intron_boundary i_start="6338" i_stop="6634" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="6635" e_stop="6654" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4691" stop="5552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4792" stop="5431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4802" stop="5715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4846" stop="5599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4849" stop="5218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4876" stop="5726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="5425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5115" stop="5657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5117" stop="5806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5122" stop="5582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5155" stop="5745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5197" stop="6008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5200" stop="5617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5203" stop="5892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5231" stop="5746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5385" stop="6337"/>
              <exon start="6635" stop="6654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5470" stop="6208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5566" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5586" stop="6084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5593" stop="6220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5742" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5754" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5833" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAATTTGTGGAGATCATTCAGTTTTTGTTCATAGCTATGTGTTCAGTATTAGCCGATGTGATATCTGATATTGATCTTATCCTTCGATTTTCTTAGGTTATATTTGTGGTCAGCTTCATGGATTCTCCACAGTCTGTTGTGTCACCATTTAAGAGTTCCTCCGTTTTCGCGGACTCTGAGAAGCAAAGCAATGAATTTTTCAGCAAGAACGCTTCTGGTCTATCCCGGGGAATTTCTGCTCATAGAGAGGATGTTGAAATCTGCAACATGGAGGACTTCATTGGTGTTCTCGACGTGTACGTACATCAGGCTAGAGATATCCACAACATCTGCATTTACCATAAACAAGATGTTTATGCAAAACTTTGCCTTACAAGTGATCCTGAAAGTGCAGTCTCCACTCAAACCATTAATGGCGGTGGGAAAAGTCCAGTCTTCAACGAAAATCTAAAGCTCAATGTTCGTACGATAAAATGTTCTGTTAAATGTGAGATATGGATGATGAGCAGGGTGAGGAATTATTTGGAAGACCAATTGTTGGGATTTGCACTAGTCCCCTTATCTGAAATCCTCATGAAAAATGGAAAGGTAGAAAAAGAGTTCTCTCCTTTTCGTCGACTGATCTCTTTCACTCCCCAGCAGGATTTGTGCACTTGTCCCTTTCTTACAATGGAACTTCACCTGAAGTTATTGAAATTCCTGCTTTTCCCATATTAGAAACTGATGCATCTCGGACAGACGGCGAAGCACGTGAGTCCCTTCCAAATGAGTTTGACAAAATTGAGTTCCCAGATCCTAAGATTGTAAATGAGAATAATCTCATGGTCTCCGAGTACTTCAATATGCCAAGCAGTAATCCAGATTCTCAAAGCTCGGATAGCTTGGTCTCTTCTGATACGGAAAACCAGCTCAGTCTAGAAGTCGATGTCCATATGGAAAATGTTCCAAGTGAGGCTACTAATTTCCACCAATATCCTAAGCGTGATTCGCCTCCTAGCAGCATATCAACCATTGACTCTCCAACAGTTTTGCATCCCGCAAGCTCTCAGTCCTCCGAGACCCAAGGAGCTTCCAAGTCGCCAGAGGAAGAATATGCATCAGCTTCTAAAGAATGTCCCACAGGTAAAAATAATGTTGGAAATGCTGAGAGCAACATATCGGAAAGCAAGCCACCCAGTGCATTTCCAAAGCCAGTGGTCATTGAGCCAGAGCAGAAGGTTGTGCAACAGGATATTGTGGATATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTGGCAAAGATGAAGCTTCCGCTGGACATTGAAAATGGGACAACCAGTTCTGATAATTCGAGTTCAGATCAGACATCGCAGACGCCCAAGAGCACTAGCTCAAGGGTGTTCTATGGCAGCAGAGCTTTCTTCTAAGCTTTTGTGAATGGTTCTCGAATAACTTATAGCGCGATTAGGAGCAAGTCTAAAAGGATAAGTGAACACTAAGGATTTTATGAATGTGGTGTTTATCCATTTTATCTTGTGAATGCTTAAAATGCTCTGAACTAATTAACTTTTTGTCTGTTGAAGACTTGTTTTACTTCAGTACCTTGTAGTTAATTAGAACTTCTGTTCTTAATATATGCTCAGCATTTCCCTTGGAATA : GCACACATTTCAGAAAAATA</gDNA_template>
            <first_frame> I  *  F  V  E  I  I  Q  F  L  F  I  A  M  C  S  V  L  A  D  V  I  S  D  I  D  L  I  L  R  F  S  *  V  I  F  V  V  S  F  M  D  S  P  Q  S  V  V  S  P  F  K  S  S  S  V  F  A  D  S  E  K  Q  S  N  E  F  F  S  K  N  A  S  G  L  S  R  G  I  S  A  H  R  E  D  V  E  I  C  N  M  E  D  F  I  G  V  L  D  V  Y  V  H  Q  A  R  D  I  H  N  I  C  I  Y  H  K  Q  D  V  Y  A  K  L  C  L  T  S  D  P  E  S  A  V  S  T  Q  T  I  N  G  G  G  K  S  P  V  F  N  E  N  L  K  L  N  V  R  T  I  K  C  S  V  K  C  E  I  W  M  M  S  R  V  R  N  Y  L  E  D  Q  L  L  G  F  A  L  V  P  L  S  E  I  L  M  K  N  G  K  V  E  K  E  F  S  P  F  R  R  L  I  S  F  T  P  Q  Q  D  L  C  T  C  P  F  L  T  M  E  L  H  L  K  L  L  K  F  L  L  F  P  Y  *  K  L  M  H  L  G  Q  T  A  K  H  V  S  P  F  Q  M  S  L  T  K  L  S  S  Q  I  L  R  L  *  M  R  I  I  S  W  S  P  S  T  S  I  C  Q  A  V  I  Q  I  L  K  A  R  I  A  W  S  L  L  I  R  K  T  S  S  V  *  K  S  M  S  I  W  K  M  F  Q  V  R  L  L  I  S  T  N  I  L  S  V  I  R  L  L  A  A  Y  Q  P  L  T  L  Q  Q  F  C  I  P  Q  A  L  S  P  P  R  P  K  E  L  P  S  R  Q  R  K  N  M  H  Q  L  L  K  N  V  P  Q  V  K  I  M  L  E  M  L  R  A  T  Y  R  K  A  S  H  P  V  H  F  Q  S  Q  W  S  L  S  Q  S  R  R  L  C  N  R  I  L  W  I  C  T  *  K  V  C  S  N  L  L  S  H  W  Q  R  *  S  F  R  W  T  L  K  M  G  Q  P  V  L  I  I  R  V  Q  I  R  H  R  R  R  P  R  A  L  A  Q  G  C  S  M  A  A  E  L  S  S  K  L  L  *  M  V  L  E  *  L  I  A  R  L  G  A  S  L  K  G  *  V  N  T  K  D  F  M  N  V  V  F  I  H  F  I  L  *  M  L  K  M  L  *  T  N  *  L  F  V  C  *  R  L  V  L  L  Q  Y  L  V  V  N  *  N  F  C  S  *  Y  M  L  S  I  S  L  G  I  :  A  H  I  S  E  K   </first_frame>
            <second_frame>  F  N  L  W  R  S  F  S  F  C  S  *  L  C  V  Q  Y  *  P  M  *  Y  L  I  L  I  L  S  F  D  F  L  R  L  Y  L  W  S  A  S  W  I  L  H  S  L  L  C  H  H  L  R  V  P  P  F  S  R  T  L  R  S  K  A  M  N  F  S  A  R  T  L  L  V  Y  P  G  E  F  L  L  I  E  R  M  L  K  S  A  T  W  R  T  S  L  V  F  S  T  C  T  Y  I  R  L  E  I  S  T  T  S  A  F  T  I  N  K  M  F  M  Q  N  F  A  L  Q  V  I  L  K  V  Q  S  P  L  K  P  L  M  A  V  G  K  V  Q  S  S  T  K  I  *  S  S  M  F  V  R  *  N  V  L  L  N  V  R  Y  G  *  *  A  G  *  G  I  I  W  K  T  N  C  W  D  L  H  *  S  P  Y  L  K  S  S  *  K  M  E  R  *  K  K  S  S  L  L  F  V  D  *  S  L  S  L  P  S  R  I  C  A  L  V  P  F  L  Q  W  N  F  T  *  S  Y  *  N  S  C  F  S  H  I  R  N  *  C  I  S  D  R  R  R  S  T  *  V  P  S  K  *  V  *  Q  N  *  V  P  R  S  *  D  C  K  *  E  *  S  H  G  L  R  V  L  Q  Y  A  K  Q  *  S  R  F  S  K  L  G  *  L  G  L  F  *  Y  G  K  P  A  Q  S  R  S  R  C  P  Y  G  K  C  S  K  *  G  Y  *  F  P  P  I  S  *  A  *  F  A  S  *  Q  H  I  N  H  *  L  S  N  S  F  A  S  R  K  L  S  V  L  R  D  P  R  S  F  Q  V  A  R  G  R  I  C  I  S  F  *  R  M  S  H  R  *  K  *  C  W  K  C  *  E  Q  H  I  G  K  Q  A  T  Q  C  I  S  K  A  S  G  H  *  A  R  A  E  G  C  A  T  G  Y  C  G  Y  V  H  E  K  Y  A  A  I  Y  *  V  I  G  K  D  E  A  S  A  G  H  *  K  W  D  N  Q  F  *  *  F  E  F  R  S  D  I  A  D  A  Q  E  H  *  L  K  G  V  L  W  Q  Q  S  F  L  L  S  F  C  E  W  F  S  N  N  L  *  R  D  *  E  Q  V  *  K  D  K  *  T  L  R  I  L  *  M  W  C  L  S  I  L  S  C  E  C  L  K  C  S  E  L  I  N  F  L  S  V  E  D  L  F  Y  F  S  T  L  *  L  I  R  T  S  V  L  N  I  C  S  A  F  P  L  E  * :   H  T  F  Q  K  N  </second_frame>
            <third_frame>   L  I  C  G  D  H  S  V  F  V  H  S  Y  V  F  S  I  S  R  C  D  I  *  Y  *  S  Y  P  S  I  F  L  G  Y  I  C  G  Q  L  H  G  F  S  T  V  C  C  V  T  I  *  E  F  L  R  F  R  G  L  *  E  A  K  Q  *  I  F  Q  Q  E  R  F  W  S  I  P  G  N  F  C  S  *  R  G  C  *  N  L  Q  H  G  G  L  H  W  C  S  R  R  V  R  T  S  G  *  R  Y  P  Q  H  L  H  L  P  *  T  R  C  L  C  K  T  L  P  Y  K  *  S  *  K  C  S  L  H  S  N  H  *  W  R  W  E  K  S  S  L  Q  R  K  S  K  A  Q  C  S  Y  D  K  M  F  C  *  M  *  D  M  D  D  E  Q  G  E  E  L  F  G  R  P  I  V  G  I  C  T  S  P  L  I  *  N  P  H  E  K  W  K  G  R  K  R  V  L  S  F  S  S  T  D  L  F  H  S  P  A  G  F  V  H  L  S  L  S  Y  N  G  T  S  P  E  V  I  E  I  P  A  F  P  I  L  E  T  D  A  S  R  T  D  G  E  A  R  E  S  L  P  N  E  F  D  K  I  E  F  P  D  P  K  I  V  N  E  N  N  L  M  V  S  E  Y  F  N  M  P  S  S  N  P  D  S  Q  S  S  D  S  L  V  S  S  D  T  E  N  Q  L  S  L  E  V  D  V  H  M  E  N  V  P  S  E  A  T  N  F  H  Q  Y  P  K  R  D  S  P  P  S  S  I  S  T  I  D  S  P  T  V  L  H  P  A  S  S  Q  S  S  E  T  Q  G  A  S  K  S  P  E  E  E  Y  A  S  A  S  K  E  C  P  T  G  K  N  N  V  G  N  A  E  S  N  I  S  E  S  K  P  P  S  A  F  P  K  P  V  V  I  E  P  E  Q  K  V  V  Q  Q  D  I  V  D  M  Y  M  K  S  M  Q  Q  F  T  E  S  L  A  K  M  K  L  P  L  D  I  E  N  G  T  T  S  S  D  N  S  S  S  D  Q  T  S  Q  T  P  K  S  T  S  S  R  V  F  Y  G  S  R  A  F  F  *  A  F  V  N  G  S  R  I  T  Y  S  A  I  R  S  K  S  K  R  I  S  E  H  *  G  F  Y  E  C  G  V  Y  P  F  Y  L  V  N  A  *  N  A  L  N  *  L  T  F  C  L  L  K  T  C  F  T  S  V  P  C  S  *  L  E  L  L  F  L  I  Y  A  Q  H  F  P  W  N   : S  T  H  F  R  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5260" stop="6105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHEKWKGRKRVLSFSSTDLFHSPAGFVHLSLSYNGTSPEVIEIPAFPILETDASRTDGEARESLPNEFDKIEFPDPKIVNENNLMVSEYFNMPSSNPDSQSSDSLVSSDTENQLSLEVDVHMENVPSEATNFHQYPKRDSPPSSISTIDSPTVLHPASSQSSETQGASKSPEEEYASASKECPTGKNNVGNAESNISESKPPSAFPKPVVIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIENGTTSSDNSSSDQTSQTPKSTSSRVFYGSRAFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4755" stop="5144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLILILSFDFLRLYLWSASWILHSLLCHHLRVPPFSRTLRSKAMNFSARTLLVYPGEFLLIERMLKSATWRTSLVFSTCTYIRLEISTTSAFTINKMFMQNFALQVILKVQSPLKPLMAVGKVQSSTKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11948" PGL_stop="11310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11948" e_stop="11310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="11948" e_stop="11310" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11948" stop="11310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATATAGGTTAAGATTGGTGATTTGGGTTTTGCAACTATAGTAGGGAAGAGTCATTCAGCACATTCGGTTCTTGGAACCCCAGAGTTCATGGCACCGGAGTTGTATGATGAGGATTATACCGAGCTGATTGATATCTACTCGTTTGGGATGTGTGTTTTGGAGATGGTGACGTTGGAACTACCTTATAGTGAGTGTGATAACGTGGTGAAGATATACAAGAAGGTAATATCCGGAGTGAGGCCCAAGGCCATGGACAAGGTTAAAGATCTCGAGGTCAAGAAGTTCATTGAGAAGTGTCTTGCTCAGCCTAGGGTTAGACCCTCTGCTTCTGAACTCCTTCAAGACCCTTTCTTTAATGATATTAATGATGATGACGAAAACGACGATGAAGAGTATACTAGTAACAACTATTGGCATGCTTAAGTCAGCCATAGCTATTATTTGCTAGTTGCTATTATATTAGTTAGTTGTATTAGGTTTTGTTGTGATATTTTTGGTGTTGATTTGTTACTTATAGTGGTTTTTGCCTTTTCTTCCAAAAAGAAGAAAAGAAAATGGTTTTGCTTTTTATGAAACTATTGTAAAAGAAAAAACAATAGAAAAAAGAGTGTATTTTTATTAAGAAATTTGTACAT</gDNA_template>
            <first_frame> C  D  I  G  *  D  W  *  F  G  F  C  N  Y  S  R  E  E  S  F  S  T  F  G  S  W  N  P  R  V  H  G  T  G  V  V  *  *  G  L  Y  R  A  D  *  Y  L  L  V  W  D  V  C  F  G  D  G  D  V  G  T  T  L  *  *  V  *  *  R  G  E  D  I  Q  E  G  N  I  R  S  E  A  Q  G  H  G  Q  G  *  R  S  R  G  Q  E  V  H  *  E  V  S  C  S  A  *  G  *  T  L  C  F  *  T  P  S  R  P  F  L  *  *  Y  *  *  *  *  R  K  R  R  *  R  V  Y  *  *  Q  L  L  A  C  L  S  Q  P  *  L  L  F  A  S  C  Y  Y  I  S  *  L  Y  *  V  L  L  *  Y  F  W  C  *  F  V  T  Y  S  G  F  C  L  F  F  Q  K  E  E  K  K  M  V  L  L  F  M  K  L  L  *  K  K  K  Q  *  K  K  E  C  I  F  I  K  K  F  V  H </first_frame>
            <second_frame>  V  I  *  V  K  I  G  D  L  G  F  A  T  I  V  G  K  S  H  S  A  H  S  V  L  G  T  P  E  F  M  A  P  E  L  Y  D  E  D  Y  T  E  L  I  D  I  Y  S  F  G  M  C  V  L  E  M  V  T  L  E  L  P  Y  S  E  C  D  N  V  V  K  I  Y  K  K  V  I  S  G  V  R  P  K  A  M  D  K  V  K  D  L  E  V  K  K  F  I  E  K  C  L  A  Q  P  R  V  R  P  S  A  S  E  L  L  Q  D  P  F  F  N  D  I  N  D  D  D  E  N  D  D  E  E  Y  T  S  N  N  Y  W  H  A  *  V  S  H  S  Y  Y  L  L  V  A  I  I  L  V  S  C  I  R  F  C  C  D  I  F  G  V  D  L  L  L  I  V  V  F  A  F  S  S  K  K  K  K  R  K  W  F  C  F  L  *  N  Y  C  K  R  K  N  N  R  K  K  S  V  F  L  L  R  N  L  Y   </second_frame>
            <third_frame>   *  Y  R  L  R  L  V  I  W  V  L  Q  L  *  *  G  R  V  I  Q  H  I  R  F  L  E  P  Q  S  S  W  H  R  S  C  M  M  R  I  I  P  S  *  L  I  S  T  R  L  G  C  V  F  W  R  W  *  R  W  N  Y  L  I  V  S  V  I  T  W  *  R  Y  T  R  R  *  Y  P  E  *  G  P  R  P  W  T  R  L  K  I  S  R  S  R  S  S  L  R  S  V  L  L  S  L  G  L  D  P  L  L  L  N  S  F  K  T  L  S  L  M  I  L  M  M  M  T  K  T  T  M  K  S  I  L  V  T  T  I  G  M  L  K  S  A  I  A  I  I  C  *  L  L  L  Y  *  L  V  V  L  G  F  V  V  I  F  L  V  L  I  C  Y  L  *  W  F  L  P  F  L  P  K  R  R  K  E  N  G  F  A  F  Y  E  T  I  V  K  E  K  T  I  E  K  R  V  Y  F  Y  *  E  I  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11938" stop="11522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKIGDLGFATIVGKSHSAHSVLGTPEFMAPELYDEDYTELIDIYSFGMCVLEMVTLELPYSECDNVVKIYKKVISGVRPKAMDKVKDLEVKKFIEKCLAQPRVRPSASELLQDPFFNDINDDDENDDEEYTSNNYWHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17173" PGL_stop="18965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17173" e_stop="17361"/>
            <exon e_start="18563" e_stop="18965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17173" e_stop="17361" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17362" i_stop="18562" i_length="1201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18563" e_stop="18965" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17173" stop="17361"/>
              <exon start="18563" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCAGAGATGGAACAAACTCCTCCGGAGGCTTCCGTCACAACGCCGCTGGATCGAACGGCGGTGCTAAGTACAAGCTCATGACTCCTGCTATGCTTCCGATCTCTAGGTCCGCCTGTATCACCATACCTCCCGGTCTCAGTCCTTCCTCCTTCCTCGAATCTCCTGTTCTCCTTTCTAACATCAAA : GCTGAGCCATCTCCGACTACAGGTTCCTTCTCCAAATTTCAAACAGTGCAAGGCTCTGGTGGGGCTGCTGCATTCTTATTGACAAGAGGTTATGCTAGTGGCAATACATACACTGAAAGAAAAGCAAGCTGCTTTGAATACAAATATGCCGGTGGATCTAGTTCTACATCAGGATCATTAGCAACTGAACATGTGGTAATGCTCTATTAGAAAATATTATTGATGTTGGATTAGAAACAAAAAGCAAATGAAACAAGAGCTTTTTTATTAGCAGTAGCCCTCTTTAACAACTGACTGATGTTTAATTTAGAAAAAATGAAAGTTTAACTCTGAGGTTCAGGTTCCTGTTCTTGTGTCTTTCTCTTGATATGGCATCTATTTGAGGTTAATGTCAAATGTGTGC</gDNA_template>
            <first_frame> Q  L  R  D  G  T  N  S  S  G  G  F  R  H  N  A  A  G  S  N  G  G  A  K  Y  K  L  M  T  P  A  M  L  P  I  S  R  S  A  C  I  T  I  P  P  G  L  S  P  S  S  F  L  E  S  P  V  L  L  S  N  I  K  :  A  E  P  S  P  T  T  G  S  F  S  K  F  Q  T  V  Q  G  S  G  G  A  A  A  F  L  L  T  R  G  Y  A  S  G  N  T  Y  T  E  R  K  A  S  C  F  E  Y  K  Y  A  G  G  S  S  S  T  S  G  S  L  A  T  E  H  V  V  M  L  Y  *  K  I  L  L  M  L  D  *  K  Q  K  A  N  E  T  R  A  F  L  L  A  V  A  L  F  N  N  *  L  M  F  N  L  E  K  M  K  V  *  L  *  G  S  G  S  C  S  C  V  F  L  L  I  W  H  L  F  E  V  N  V  K  C  V  </first_frame>
            <second_frame>  N  S  E  M  E  Q  T  P  P  E  A  S  V  T  T  P  L  D  R  T  A  V  L  S  T  S  S  *  L  L  L  C  F  R  S  L  G  P  P  V  S  P  Y  L  P  V  S  V  L  P  P  S  S  N  L  L  F  S  F  L  T  S  K :   L  S  H  L  R  L  Q  V  P  S  P  N  F  K  Q  C  K  A  L  V  G  L  L  H  S  Y  *  Q  E  V  M  L  V  A  I  H  T  L  K  E  K  Q  A  A  L  N  T  N  M  P  V  D  L  V  L  H  Q  D  H  *  Q  L  N  M  W  *  C  S  I  R  K  Y  Y  *  C  W  I  R  N  K  K  Q  M  K  Q  E  L  F  Y  *  Q  *  P  S  L  T  T  D  *  C  L  I  *  K  K  *  K  F  N  S  E  V  Q  V  P  V  L  V  S  F  S  *  Y  G  I  Y  L  R  L  M  S  N  V  C </second_frame>
            <third_frame>   T  Q  R  W  N  K  L  L  R  R  L  P  S  Q  R  R  W  I  E  R  R  C  *  V  Q  A  H  D  S  C  Y  A  S  D  L  *  V  R  L  Y  H  H  T  S  R  S  Q  S  F  L  L  P  R  I  S  C  S  P  F  *  H  Q   : S  *  A  I  S  D  Y  R  F  L  L  Q  I  S  N  S  A  R  L  W  W  G  C  C  I  L  I  D  K  R  L  C  *  W  Q  Y  I  H  *  K  K  S  K  L  L  *  I  Q  I  C  R  W  I  *  F  Y  I  R  I  I  S  N  *  T  C  G  N  A  L  L  E  N  I  I  D  V  G  L  E  T  K  S  K  *  N  K  S  F  F  I  S  S  S  P  L  *  Q  L  T  D  V  *  F  R  K  N  E  S  L  T  L  R  F  R  F  L  F  L  C  L  S  L  D  M  A  S  I  *  G  *  C  Q  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17173" stop="17361"/>
                    <exon start="18563" stop="18772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLRDGTNSSGGFRHNAAGSNGGAKYKLMTPAMLPISRSACITIPPGLSPSSFLESPVLLSNIKAEPSPTTGSFSKFQTVQGSGGAAAFLLTRGYASGNTYTERKASCFEYKYAGGSSSTSGSLATEHVVMLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20135" PGL_stop="20408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20135" e_stop="20408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20135" e_stop="20408" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20135" stop="20408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTGAAAGATCATCAGATGATGGGTATAACTGGCGAAAGTATGGCCAGAAACTTGTTAAAGGAAGTGAATTTCCGAGAAGCTATTACAAATGTACATATCCAAACTGCGAAGTGAAAAAGATATTTGAGCGGTCACCTGAAGGACAAATAACAGAGATTGTTTATAAAGGTTCTCATGATCATCCTAAACCCCAACTGAGCCGCCGATTTTCTCCTGGTGCTCTCATGTCTGTTCAAGAAGATAAATGTGAGAAAGAAGTGTGTTTCAGGGG</gDNA_template>
            <first_frame> H  L  K  D  H  Q  M  M  G  I  T  G  E  S  M  A  R  N  L  L  K  E  V  N  F  R  E  A  I  T  N  V  H  I  Q  T  A  K  *  K  R  Y  L  S  G  H  L  K  D  K  *  Q  R  L  F  I  K  V  L  M  I  I  L  N  P  N  *  A  A  D  F  L  L  V  L  S  C  L  F  K  K  I  N  V  R  K  K  C  V  S  G  </first_frame>
            <second_frame>  I  *  K  I  I  R  *  W  V  *  L  A  K  V  W  P  E  T  C  *  R  K  *  I  S  E  K  L  L  Q  M  Y  I  S  K  L  R  S  E  K  D  I  *  A  V  T  *  R  T  N  N  R  D  C  L  *  R  F  S  *  S  S  *  T  P  T  E  P  P  I  F  S  W  C  S  H  V  C  S  R  R  *  M  *  E  R  S  V  F  Q  G </second_frame>
            <third_frame>   S  E  R  S  S  D  D  G  Y  N  W  R  K  Y  G  Q  K  L  V  K  G  S  E  F  P  R  S  Y  Y  K  C  T  Y  P  N  C  E  V  K  K  I  F  E  R  S  P  E  G  Q  I  T  E  I  V  Y  K  G  S  H  D  H  P  K  P  Q  L  S  R  R  F  S  P  G  A  L  M  S  V  Q  E  D  K  C  E  K  E  V  C  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20137" stop="20406"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SERSSDDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSPEGQITEIVYKGSHDHPKPQLSRRFSPGALMSVQEDKCEKEVCFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20562" PGL_stop="22057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20562" e_stop="20690"/>
            <exon e_start="20760" e_stop="20915"/>
            <exon e_start="21414" e_stop="22057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20562" e_stop="20690" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20691" i_stop="20759" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20760" e_stop="20915" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20916" i_stop="21413" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21414" e_stop="22057" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20562" stop="20690"/>
              <exon start="20760" stop="20915"/>
              <exon start="21414" stop="21762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20562" stop="20690"/>
              <exon start="20760" stop="20915"/>
              <exon start="21414" stop="21728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20609" stop="20690"/>
              <exon start="20760" stop="20915"/>
              <exon start="21414" stop="22057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTGAGCCTAGTAGTACTCCCGTATCACCTCAGCAAGCGGACACTGATGGTCTTGAAGGAGCAGGGTCACAGATGCATGGCACTAATGATGATATGGATGAGGATGATCAATTTGCGAAAAGAAG : GAAAATGGATGGTGGGATGGATATAACACCAGTGATTAAGCCTATCCGTGAACCACGCGTTGTTGTTCAAACAGTCAGTGAAGTTGATATATTGGATGATGGGTACAAGTGGCGCAAATATGGACAGAAGGTGGTCCGAGGCAATCCTAATCCTAG : GAGCTATTACAAGTGCACCAATGCTGGATGCCCTGTCAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTTATCACCACATATGAAGGAAAACATAACCACGATGTACCCGCTGCAAAAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGACCAACTCACTTAGTCTGGATCTAGGCGTTAGTACTGGATATCGTCTTGATAATGGGAACAACGGGCAACTTCACACCCTCCATCACCAAGTTCAAGTTTCACGTTCTGGTATGATGCTAGTACAGCCAGCTGCAGTTGCAGCGCGCTATGGTATTGTACATGGTGGTATGAGCCGATTTGGAGCTATAGATAATCGTGTTCAAGGACCTAGTTTTGAAACTTTGCCTTTACAACCTTCTACTCAGTCTCTCCAAAACTATGGAAAGATACTTCTTGGCCCGTGAATCGTATCTACCATCAACTATAAGAGCTTAACAATAAGAAGCCACCATCTATATTTTTTCCTGCATCTTGGTGGATTACAAAGATATCTCTAGTTGAAGTATAAATACTTCTAGGACTCGTCGCGTGATGCTGTATAATACACCTTCACCTAGTGTTCTTTGTGTA</gDNA_template>
            <first_frame> *  N  *  A  *  *  Y  S  R  I  T  S  A  S  G  H  *  W  S  *  R  S  R  V  T  D  A  W  H  *  *  *  Y  G  *  G  *  S  I  C  E  K  K  :  E  N  G  W  W  D  G  Y  N  T  S  D  *  A  Y  P  *  T  T  R  C  C  S  N  S  Q  *  S  *  Y  I  G  *  W  V  Q  V  A  Q  I  W  T  E  G  G  P  R  Q  S  *  S  *  :  E  L  L  Q  V  H  Q  C  W  M  P  C  Q  E  T  C  G  E  G  F  S  *  S  K  S  C  Y  H  H  I  *  R  K  T  *  P  R  C  T  R  C  K  K  *  *  P  *  N  D  R  I  L  A  C  N  R  Q  F  K  D  Q  G  R  R  D  Q  L  T  *  S  G  S  R  R  *  Y  W  I  S  S  *  *  W  E  Q  R  A  T  S  H  P  P  S  P  S  S  S  F  T  F  W  Y  D  A  S  T  A  S  C  S  C  S  A  L  W  Y  C  T  W  W  Y  E  P  I  W  S  Y  R  *  S  C  S  R  T  *  F  *  N  F  A  F  T  T  F  Y  S  V  S  P  K  L  W  K  D  T  S  W  P  V  N  R  I  Y  H  Q  L  *  E  L  N  N  K  K  P  P  S  I  F  F  P  A  S  W  W  I  T  K  I  S  L  V  E  V  *  I  L  L  G  L  V  A  *  C  C  I  I  H  L  H  L  V  F  F  V   </first_frame>
            <second_frame>  K  T  E  P  S  S  T  P  V  S  P  Q  Q  A  D  T  D  G  L  E  G  A  G  S  Q  M  H  G  T  N  D  D  M  D  E  D  D  Q  F  A  K  R  R :   K  M  D  G  G  M  D  I  T  P  V  I  K  P  I  R  E  P  R  V  V  V  Q  T  V  S  E  V  D  I  L  D  D  G  Y  K  W  R  K  Y  G  Q  K  V  V  R  G  N  P  N  P  R :   S  Y  Y  K  C  T  N  A  G  C  P  V  R  K  H  V  E  R  A  S  H  D  P  K  A  V  I  T  T  Y  E  G  K  H  N  H  D  V  P  A  A  K  N  N  N  H  E  M  T  G  S  S  P  V  T  G  S  S  R  I  R  A  G  E  T  N  S  L  S  L  D  L  G  V  S  T  G  Y  R  L  D  N  G  N  N  G  Q  L  H  T  L  H  H  Q  V  Q  V  S  R  S  G  M  M  L  V  Q  P  A  A  V  A  A  R  Y  G  I  V  H  G  G  M  S  R  F  G  A  I  D  N  R  V  Q  G  P  S  F  E  T  L  P  L  Q  P  S  T  Q  S  L  Q  N  Y  G  K  I  L  L  G  P  *  I  V  S  T  I  N  Y  K  S  L  T  I  R  S  H  H  L  Y  F  F  L  H  L  G  G  L  Q  R  Y  L  *  L  K  Y  K  Y  F  *  D  S  S  R  D  A  V  *  Y  T  F  T  *  C  S  L  C  </second_frame>
            <third_frame>   K  L  S  L  V  V  L  P  Y  H  L  S  K  R  T  L  M  V  L  K  E  Q  G  H  R  C  M  A  L  M  M  I  W  M  R  M  I  N  L  R  K  E   : G  K  W  M  V  G  W  I  *  H  Q  *  L  S  L  S  V  N  H  A  L  L  F  K  Q  S  V  K  L  I  Y  W  M  M  G  T  S  G  A  N  M  D  R  R  W  S  E  A  I  L  I  L   : G  A  I  T  S  A  P  M  L  D  A  L  S  G  N  M  W  R  G  L  L  M  I  Q  K  L  L  S  P  H  M  K  E  N  I  T  T  M  Y  P  L  Q  K  I  I  T  M  K  *  Q  D  P  R  L  *  P  A  V  Q  G  S  G  Q  E  R  P  T  H  L  V  W  I  *  A  L  V  L  D  I  V  L  I  M  G  T  T  G  N  F  T  P  S  I  T  K  F  K  F  H  V  L  V  *  C  *  Y  S  Q  L  Q  L  Q  R  A  M  V  L  Y  M  V  V  *  A  D  L  E  L  *  I  I  V  F  K  D  L  V  L  K  L  C  L  Y  N  L  L  L  S  L  S  K  T  M  E  R  Y  F  L  A  R  E  S  Y  L  P  S  T  I  R  A  *  Q  *  E  A  T  I  Y  I  F  S  C  I  L  V  D  Y  K  D  I  S  S  *  S  I  N  T  S  R  T  R  R  V  M  L  Y  N  T  P  S  P  S  V  L  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20563" stop="20690"/>
                    <exon start="20760" stop="20915"/>
                    <exon start="21414" stop="21891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEPSSTPVSPQQADTDGLEGAGSQMHGTNDDMDEDDQFAKRRKMDGGMDITPVIKPIREPRVVVQTVSEVDILDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNNNHEMTGSSPVTGSSRIRAGETNSLSLDLGVSTGYRLDNGNNGQLHTLHHQVQVSRSGMMLVQPAAVAARYGIVHGGMSRFGAIDNRVQGPSFETLPLQPSTQSLQNYGKILLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22220" PGL_stop="22577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22220" e_stop="22241"/>
            <exon e_start="22312" e_stop="22577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.682"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.682">
            <gDNA_exon_boundary e_start="22220" e_stop="22241" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22242" i_stop="22311" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22312" e_stop="22577" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22220" stop="22241"/>
              <exon start="22312" stop="22577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTATAATTTTCATTTGAT : AGATAAAAAAGACTTCGATTAGTTTCTGATAGAACAGATCCTAGCAAGATTAAATGACCTGTCTTTTTAAATTAATACAAACAGAAAAAAGAAGAGGTGCCACTATCTGTCTCACCATTATCAAGCTACAAGTTACATGCACCTAATTACGGTAGGTAGGATCTACACAGACTTTACCTCTACCTTTGCAGGATAGAGAGACTGTTTCCGATAAGAGATTATTTCCATGCACAAGAAGCAACTAAATCTCGATTCATCCAGCCAAG</gDNA_template>
            <first_frame> F  S  I  I  F  I  *   : *  I  K  K  T  S  I  S  F  *  *  N  R  S  *  Q  D  *  M  T  C  L  F  K  L  I  Q  T  E  K  R  R  G  A  T  I  C  L  T  I  I  K  L  Q  V  T  C  T  *  L  R  *  V  G  S  T  Q  T  L  P  L  P  L  Q  D  R  E  T  V  S  D  K  R  L  F  P  C  T  R  S  N  *  I  S  I  H  P  A  K </first_frame>
            <second_frame>  F  L  *  F  S  F  D  :  R  *  K  R  L  R  L  V  S  D  R  T  D  P  S  K  I  K  *  P  V  F  L  N  *  Y  K  Q  K  K  E  E  V  P  L  S  V  S  P  L  S  S  Y  K  L  H  A  P  N  Y  G  R  *  D  L  H  R  L  Y  L  Y  L  C  R  I  E  R  L  F  P  I  R  D  Y  F  H  A  Q  E  A  T  K  S  R  F  I  Q  P   </second_frame>
            <third_frame>   F  Y  N  F  H  L  I :   D  K  K  D  F  D  *  F  L  I  E  Q  I  L  A  R  L  N  D  L  S  F  *  I  N  T  N  R  K  K  K  R  C  H  Y  L  S  H  H  Y  Q  A  T  S  Y  M  H  L  I  T  V  G  R  I  Y  T  D  F  T  S  T  F  A  G  *  R  D  C  F  R  *  E  I  I  S  M  H  K  K  Q  L  N  L  D  S  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30200" PGL_stop="22307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25714" e_stop="25540"/>
            <exon e_start="24296" e_stop="22307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25714" e_stop="25540" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.934">
            <gDNA_intron_boundary i_start="25539" i_stop="24297" i_length="1243"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="24296" e_stop="22307" e_length="1990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25714" stop="25540"/>
              <exon start="24296" stop="23695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25540"/>
              <exon start="24296" stop="23582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24247" stop="23801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23632" stop="23208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23613" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23613" stop="23094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23579" stop="23007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23579" stop="23026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23446" stop="23200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23002" stop="22307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22921" stop="22672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAATGAAGTTTGATTTTTTTTTTCTCTGACTTTCTTTTTAGTATTTTCTTCACCACTAGTGGCTTACTAAAAATGGAATATGCGTTGTCTAAAGTTAAGCTTTTTTTCTCTGATTATTTCATTAACCATGTTCTTCAATCTTTTTGCTTAAGATTTCTTCTCTGAGTATCAG : GATAGTTGGATCTTTGAAATGTGTTATGGATGTGAATGTTAAAGCTTGGAGCTGGTGAACTTTTTGTAACGAGGCGGGGTGTATGCTGGAAATGTTTCTGTTGTCTTCTGGATATCTATGATGTGCTAAACGGTTAGATAATATTTCACGATGAGGCCTTCTCAGAACCCTGAGGAAATCAACGAGTTCAACAAATTCTATAACCAACCCATAGAGTATCAAGAATCCTATTTCCTGCCTTCCGTTAACAATCCGAACAACAACCAATCGTTCTATGCTGATGTCTCTGCCTTAAAACCCGCCCAACACTGTTATGTTGAATCATCCGCGGGAAATTCTAGTGAACTTGTTTCTGATTCACCTCCTATTGTTAATTTCAACCCCATGATGAACCAAGGTTCTGATTCGTGTCGTTCAGACATGCATCATTCTCCTGATGATACATTTCAGTCGTCGGGTAACAGTTCGTGCTACACTAGTGATGTTACTGACCTGAAGCACAAGTTAAGGGAACTTGAAACTGCAATGCTGGGGCCAGATTCAGAAAGCTTGGAATCATTTAATAATACTATCCCTGTGACTGCAGCCAATCAAGTTCCATCAGAGTCGGATAAATTGGTTGGAATGATGGAGATGATGCCTAGCGGAGACTTGAAAGAAGTTCTAATTGCTTGTGCTAAAGCAATAGCGGAGAATAATTTGATCACAGCTGAATGGTTAATGTCAGAACTACGCACGGTGGTATCTGTTTGTGGGTCTCCCATACAACGTTTAGGTGCTTATATGCTGGAAGGTTTAGTTGCTAGATTGGCCTCCTCGGGAAGCTCCATCTACAAGGCCTTAAGGTGCAAAGAGCCTACTAGTGTCGAGCTATTCTCGTACATGCACTTGCTTTATGAAATCTGTCCATACTTCAAGTTTGGATATTTGTCAGCAAATGGTGCAATTGTTGATGCCATGAAAGATGAGAACTCAATTCATATAATCGATTTCCAGATTGCTCAGGGTAGCCAGTGGATCACCTTAATCCATGCTCTTGCAGCACGGCCTGGTGGACCTCCAAGAATCCGCATCACAGGGATTGATGACTCTACATCAGCTTACGCCAGAGGAGGAGGGATTGAAATCGTAGGTCGAAGACTGTCAAGCATTGCTGCATCTTGCAATGTACCTTTCGAATTTCATCCCGTGTCTGCTTCTTGTCCAGATATTGAGATTGAGCATCTTAAGGTTCTTCCCGGGGAACCATTGGCTGTTAACTTTGCGCTCGTCTTGCACCATATGCCTGATGAGAGCGTTGGAACTCAAAATCACAGAGACAGACTTCTGAGGATGGTTAAAAGCTTATCTCCCAAGATTGTTACCTTAGTGGAGCAAGAGTCCAACACTAACACAGCCCAATTCTTCCCCAGGTTCTTGGAGACACTGAACTACTACCTATCTGTTTTCGAATCAATAGACGTGGCTCTACCTAGAGACCATAAGGAACGAATCAACGTTGAGCAACACTGCTTAGCCCGTGAAATTGTCAACATATTAGCATGTGAAGGGGCAGAGAGAGTGGAACGACACGAGCTGCTTGAAAGGTGGAGATCACGATTTGCTGTGGCCGGGTTTAAACCATATCCGTTAAGCTCCTCAGTAAATGCTACTATCAAGACCCTGCTGGAGAATTACTACCAAAGTTATACGCTTAATGAGAGAAATGGCGCGCTCTATCTTGGCTGGATGAATCGAGATTTAGTTGCTTCTTGTGCATGGAAATAATCTCTTATCGGAAACAGTCTCTCTATCCTGCAAAGGTAGAGGTAAAGTCTGTGTAGATCCTACCTACCGTAATTAGGTGCATGTAACTTGTAGCTTGATAATGGTGAGACAGATAGTGGCACCTCTTCTTTTTTCTGTTTGTATTAATTTAAAAAGACAGGTCATTTAATCTTGCTAGGATCTGTTCTATCAGAAACTAATCGAAGTCTTTTTTATCTCTCAC</gDNA_template>
            <first_frame> *  K  *  S  L  I  F  F  F  S  D  F  L  F  S  I  F  F  T  T  S  G  L  L  K  M  E  Y  A  L  S  K  V  K  L  F  F  S  D  Y  F  I  N  H  V  L  Q  S  F  C  L  R  F  L  L  *  V  S   : G  *  L  D  L  *  N  V  L  W  M  *  M  L  K  L  G  A  G  E  L  F  V  T  R  R  G  V  C  W  K  C  F  C  C  L  L  D  I  Y  D  V  L  N  G  *  I  I  F  H  D  E  A  F  S  E  P  *  G  N  Q  R  V  Q  Q  I  L  *  P  T  H  R  V  S  R  I  L  F  P  A  F  R  *  Q  S  E  Q  Q  P  I  V  L  C  *  C  L  C  L  K  T  R  P  T  L  L  C  *  I  I  R  G  K  F  *  *  T  C  F  *  F  T  S  Y  C  *  F  Q  P  H  D  E  P  R  F  *  F  V  S  F  R  H  A  S  F  S  *  *  Y  I  S  V  V  G  *  Q  F  V  L  H  *  *  C  Y  *  P  E  A  Q  V  K  G  T  *  N  C  N  A  G  A  R  F  R  K  L  G  I  I  *  *  Y  Y  P  C  D  C  S  Q  S  S  S  I  R  V  G  *  I  G  W  N  D  G  D  D  A  *  R  R  L  E  R  S  S  N  C  L  C  *  S  N  S  G  E  *  F  D  H  S  *  M  V  N  V  R  T  T  H  G  G  I  C  L  W  V  S  H  T  T  F  R  C  L  Y  A  G  R  F  S  C  *  I  G  L  L  G  K  L  H  L  Q  G  L  K  V  Q  R  A  Y  *  C  R  A  I  L  V  H  A  L  A  L  *  N  L  S  I  L  Q  V  W  I  F  V  S  K  W  C  N  C  *  C  H  E  R  *  E  L  N  S  Y  N  R  F  P  D  C  S  G  *  P  V  D  H  L  N  P  C  S  C  S  T  A  W  W  T  S  K  N  P  H  H  R  D  *  *  L  Y  I  S  L  R  Q  R  R  R  D  *  N  R  R  S  K  T  V  K  H  C  C  I  L  Q  C  T  F  R  I  S  S  R  V  C  F  L  S  R  Y  *  D  *  A  S  *  G  S  S  R  G  T  I  G  C  *  L  C  A  R  L  A  P  Y  A  *  *  E  R  W  N  S  K  S  Q  R  Q  T  S  E  D  G  *  K  L  I  S  Q  D  C  Y  L  S  G  A  R  V  Q  H  *  H  S  P  I  L  P  Q  V  L  G  D  T  E  L  L  P  I  C  F  R  I  N  R  R  G  S  T  *  R  P  *  G  T  N  Q  R  *  A  T  L  L  S  P  *  N  C  Q  H  I  S  M  *  R  G  R  E  S  G  T  T  R  A  A  *  K  V  E  I  T  I  C  C  G  R  V  *  T  I  S  V  K  L  L  S  K  C  Y  Y  Q  D  P  A  G  E  L  L  P  K  L  Y  A  *  *  E  K  W  R  A  L  S  W  L  D  E  S  R  F  S  C  F  L  C  M  E  I  I  S  Y  R  K  Q  S  L  Y  P  A  K  V  E  V  K  S  V  *  I  L  P  T  V  I  R  C  M  *  L  V  A  *  *  W  *  D  R  *  W  H  L  F  F  F  L  F  V  L  I  *  K  D  R  S  F  N  L  A  R  I  C  S  I  R  N  *  S  K  S  F  L  S  L   </first_frame>
            <second_frame>  E  N  E  V  *  F  F  F  S  L  T  F  F  L  V  F  S  S  P  L  V  A  Y  *  K  W  N  M  R  C  L  K  L  S  F  F  S  L  I  I  S  L  T  M  F  F  N  L  F  A  *  D  F  F  S  E  Y  Q  :  D  S  W  I  F  E  M  C  Y  G  C  E  C  *  S  L  E  L  V  N  F  L  *  R  G  G  V  Y  A  G  N  V  S  V  V  F  W  I  S  M  M  C  *  T  V  R  *  Y  F  T  M  R  P  S  Q  N  P  E  E  I  N  E  F  N  K  F  Y  N  Q  P  I  E  Y  Q  E  S  Y  F  L  P  S  V  N  N  P  N  N  N  Q  S  F  Y  A  D  V  S  A  L  K  P  A  Q  H  C  Y  V  E  S  S  A  G  N  S  S  E  L  V  S  D  S  P  P  I  V  N  F  N  P  M  M  N  Q  G  S  D  S  C  R  S  D  M  H  H  S  P  D  D  T  F  Q  S  S  G  N  S  S  C  Y  T  S  D  V  T  D  L  K  H  K  L  R  E  L  E  T  A  M  L  G  P  D  S  E  S  L  E  S  F  N  N  T  I  P  V  T  A  A  N  Q  V  P  S  E  S  D  K  L  V  G  M  M  E  M  M  P  S  G  D  L  K  E  V  L  I  A  C  A  K  A  I  A  E  N  N  L  I  T  A  E  W  L  M  S  E  L  R  T  V  V  S  V  C  G  S  P  I  Q  R  L  G  A  Y  M  L  E  G  L  V  A  R  L  A  S  S  G  S  S  I  Y  K  A  L  R  C  K  E  P  T  S  V  E  L  F  S  Y  M  H  L  L  Y  E  I  C  P  Y  F  K  F  G  Y  L  S  A  N  G  A  I  V  D  A  M  K  D  E  N  S  I  H  I  I  D  F  Q  I  A  Q  G  S  Q  W  I  T  L  I  H  A  L  A  A  R  P  G  G  P  P  R  I  R  I  T  G  I  D  D  S  T  S  A  Y  A  R  G  G  G  I  E  I  V  G  R  R  L  S  S  I  A  A  S  C  N  V  P  F  E  F  H  P  V  S  A  S  C  P  D  I  E  I  E  H  L  K  V  L  P  G  E  P  L  A  V  N  F  A  L  V  L  H  H  M  P  D  E  S  V  G  T  Q  N  H  R  D  R  L  L  R  M  V  K  S  L  S  P  K  I  V  T  L  V  E  Q  E  S  N  T  N  T  A  Q  F  F  P  R  F  L  E  T  L  N  Y  Y  L  S  V  F  E  S  I  D  V  A  L  P  R  D  H  K  E  R  I  N  V  E  Q  H  C  L  A  R  E  I  V  N  I  L  A  C  E  G  A  E  R  V  E  R  H  E  L  L  E  R  W  R  S  R  F  A  V  A  G  F  K  P  Y  P  L  S  S  S  V  N  A  T  I  K  T  L  L  E  N  Y  Y  Q  S  Y  T  L  N  E  R  N  G  A  L  Y  L  G  W  M  N  R  D  L  V  A  S  C  A  W  K  *  S  L  I  G  N  S  L  S  I  L  Q  R  *  R  *  S  L  C  R  S  Y  L  P  *  L  G  A  C  N  L  *  L  D  N  G  E  T  D  S  G  T  S  S  F  F  C  L  Y  *  F  K  K  T  G  H  L  I  L  L  G  S  V  L  S  E  T  N  R  S  L  F  Y  L  S  </second_frame>
            <third_frame>   K  M  K  F  D  F  F  F  L  *  L  S  F  *  Y  F  L  H  H  *  W  L  T  K  N  G  I  C  V  V  *  S  *  A  F  F  L  *  L  F  H  *  P  C  S  S  I  F  L  L  K  I  S  S  L  S  I  R :   I  V  G  S  L  K  C  V  M  D  V  N  V  K  A  W  S  W  *  T  F  C  N  E  A  G  C  M  L  E  M  F  L  L  S  S  G  Y  L  *  C  A  K  R  L  D  N  I  S  R  *  G  L  L  R  T  L  R  K  S  T  S  S  T  N  S  I  T  N  P  *  S  I  K  N  P  I  S  C  L  P  L  T  I  R  T  T  T  N  R  S  M  L  M  S  L  P  *  N  P  P  N  T  V  M  L  N  H  P  R  E  I  L  V  N  L  F  L  I  H  L  L  L  L  I  S  T  P  *  *  T  K  V  L  I  R  V  V  Q  T  C  I  I  L  L  M  I  H  F  S  R  R  V  T  V  R  A  T  L  V  M  L  L  T  *  S  T  S  *  G  N  L  K  L  Q  C  W  G  Q  I  Q  K  A  W  N  H  L  I  I  L  S  L  *  L  Q  P  I  K  F  H  Q  S  R  I  N  W  L  E  *  W  R  *  C  L  A  E  T  *  K  K  F  *  L  L  V  L  K  Q  *  R  R  I  I  *  S  Q  L  N  G  *  C  Q  N  Y  A  R  W  Y  L  F  V  G  L  P  Y  N  V  *  V  L  I  C  W  K  V  *  L  L  D  W  P  P  R  E  A  P  S  T  R  P  *  G  A  K  S  L  L  V  S  S  Y  S  R  T  C  T  C  F  M  K  S  V  H  T  S  S  L  D  I  C  Q  Q  M  V  Q  L  L  M  P  *  K  M  R  T  Q  F  I  *  S  I  S  R  L  L  R  V  A  S  G  S  P  *  S  M  L  L  Q  H  G  L  V  D  L  Q  E  S  A  S  Q  G  L  M  T  L  H  Q  L  T  P  E  E  E  G  L  K  S  *  V  E  D  C  Q  A  L  L  H  L  A  M  Y  L  S  N  F  I  P  C  L  L  L  V  Q  I  L  R  L  S  I  L  R  F  F  P  G  N  H  W  L  L  T  L  R  S  S  C  T  I  C  L  M  R  A  L  E  L  K  I  T  E  T  D  F  *  G  W  L  K  A  Y  L  P  R  L  L  P  *  W  S  K  S  P  T  L  T  Q  P  N  S  S  P  G  S  W  R  H  *  T  T  T  Y  L  F  S  N  Q  *  T  W  L  Y  L  E  T  I  R  N  E  S  T  L  S  N  T  A  *  P  V  K  L  S  T  Y  *  H  V  K  G  Q  R  E  W  N  D  T  S  C  L  K  G  G  D  H  D  L  L  W  P  G  L  N  H  I  R  *  A  P  Q  *  M  L  L  S  R  P  C  W  R  I  T  T  K  V  I  R  L  M  R  E  M  A  R  S  I  L  A  G  *  I  E  I  *  L  L  L  V  H  G  N  N  L  L  S  E  T  V  S  L  S  C  K  G  R  G  K  V  C  V  D  P  T  Y  R  N  *  V  H  V  T  C  S  L  I  M  V  R  Q  I  V  A  P  L  L  F  S  V  C  I  N  L  K  R  Q  V  I  *  S  C  *  D  L  F  Y  Q  K  L  I  E  V  F  F  I  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24155" stop="22530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1623</number_coding_nucleotides>
                  <number_encoded_amino_acids>541</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFTMRPSQNPEEINEFNKFYNQPIEYQESYFLPSVNNPNNNQSFYADVSALKPAQHCYVESSAGNSSELVSDSPPIVNFNPMMNQGSDSCRSDMHHSPDDTFQSSGNSSCYTSDVTDLKHKLRELETAMLGPDSESLESFNNTIPVTAANQVPSESDKLVGMMEMMPSGDLKEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPTSVELFSYMHLLYEICPYFKFGYLSANGAIVDAMKDENSIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAYARGGGIEIVGRRLSSIAASCNVPFEFHPVSASCPDIEIEHLKVLPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTAQFFPRFLETLNYYLSVFESIDVALPRDHKERINVEQHCLAREIVNILACEGAERVERHELLERWRSRFAVAGFKPYPLSSSVNATIKTLLENYYQSYTLNERNGALYLGWMNRDLVASCAWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30163" e_stop="29959"/>
            <exon e_start="29466" e_stop="29167"/>
            <exon e_start="29068" e_stop="29055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30163" e_stop="29959" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29466" e_stop="29167" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="29166" i_stop="29069" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="29068" e_stop="29055" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30163" stop="29959"/>
              <exon start="29466" stop="29167"/>
              <exon start="29068" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30163" stop="29959"/>
              <exon start="29466" stop="29167"/>
              <exon start="29068" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30162" stop="29959"/>
              <exon start="29466" stop="29167"/>
              <exon start="29068" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30108" stop="29959"/>
              <exon start="29466" stop="29170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30063" stop="29959"/>
              <exon start="29466" stop="29172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT : CTTAAATGAGAGAA</gDNA_template>
            <first_frame> G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *   : S  *  M  R  E </first_frame>
            <second_frame>  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  :  L  K  *  E   </second_frame>
            <third_frame>   S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I :   L  N  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30180" e_stop="29959"/>
            <exon e_start="29466" e_stop="29033"/>
            <exon e_start="28881" e_stop="28807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.991"/>
          <exon-only e_score="0.413"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30180" e_stop="29959" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="29466" e_stop="29033" e_length="434"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29032" i_stop="28882" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.413">
            <gDNA_exon_boundary e_start="28881" e_stop="28807" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30180" stop="29959"/>
              <exon start="29466" stop="29033"/>
              <exon start="28881" stop="28807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30144" stop="29959"/>
              <exon start="29466" stop="29059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30108" stop="29959"/>
              <exon start="29466" stop="29170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30063" stop="29959"/>
              <exon start="29466" stop="29172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT : TGTTGTGAATGGCGAGCGAAAATCGAAAAGCATATATATCTGTACCTAGACACTAGAACAGCGAAAAACAATCCA</gDNA_template>
            <first_frame> D  R  K  I  Q  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  M  I  S  C  V  A  M  N  H  V  L  L  L  L  A  N  N  D  V  L  T  M  H  Y  L  V  *  *  C  F  E  I  S  L  N  E  R  I  E  I  Y  V  A  N  I :   V  V  N  G  E  R  K  S  K  S  I  Y  I  C  T  *  T  L  E  Q  R  K  T  I   </first_frame>
            <second_frame>  I  V  K  F  N  W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I  *  F  L  V  L  R  *  I  M  Y  Y  C  Y  L  L  I  M  M  C  *  L  C  I  I  *  Y  D  N  V  L  K  S  A  *  M  R  E  L  R  F  M  *  P  T   : L  L  *  M  A  S  E  N  R  K  A  Y  I  S  V  P  R  H  *  N  S  E  K  Q  S  </second_frame>
            <third_frame>   S  *  N  S  T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  Y  D  F  L  C  C  D  E  S  C  I  I  V  T  C  *  *  *  C  V  D  Y  A  L  F  S  M  I  M  F  *  N  Q  L  K  *  E  N  *  D  L  C  S  Q  H  :  C  C  E  W  R  A  K  I  E  K  H  I  Y  L  Y  L  D  T  R  T  A  K  N  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="30163" e_stop="29959"/>
            <exon e_start="29466" e_stop="29168"/>
            <exon e_start="25885" e_stop="25803"/>
            <exon e_start="25520" e_stop="25489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.000" e_score="0.530"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="30163" e_stop="29959" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29466" e_stop="29168" e_length="299"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29167" i_stop="25886" i_length="3282"/>
          </intron>
          <exon e_serial="3" e_score="0.530">
            <gDNA_exon_boundary e_start="25885" e_stop="25803" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.585" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25802" i_stop="25521" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="25520" e_stop="25489" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30163" stop="29959"/>
              <exon start="29466" stop="29168"/>
              <exon start="25885" stop="25803"/>
              <exon start="25520" stop="25489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30108" stop="29959"/>
              <exon start="29466" stop="29170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30063" stop="29959"/>
              <exon start="29466" stop="29172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAA : AAAATAAAAATTAATTAAAAAAGAACTACAATATGAAGTCAAATAGACTATTATGATTGTACTCCCACCAAAAAGAATTAATG : TTTTTTTTTTTGATAATCTGAAGATATGGGAA</gDNA_template>
            <first_frame> G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  :  K  I  K  I  N  *  K  R  T  T  I  *  S  Q  I  D  Y  Y  D  C  T  P  T  K  K  N  *  C :   F  F  F  *  *  S  E  D  M  G  </first_frame>
            <second_frame>  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  K :   K  *  K  L  I  K  K  E  L  Q  Y  E  V  K  *  T  I  M  I  V  L  P  P  K  R  I  N   : V  F  F  F  D  N  L  K  I  W  E </second_frame>
            <third_frame>   S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L   : K  N  K  N  *  L  K  K  N  Y  N  M  K  S  N  R  L  L  *  L  Y  S  H  Q  K  E  L  M  :  F  F  F  L  I  I  *  R  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="30200" e_stop="29959"/>
            <exon e_start="29466" e_stop="29181"/>
            <exon e_start="29068" e_stop="29033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.614" acc_prob="0.960" e_score="0.965"/>
          <exon-only e_score="0.389"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="30200" e_stop="29959" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29958" i_stop="29467" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="29466" e_stop="29181" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="0.614" acc_prob="0.960">
            <gDNA_intron_boundary i_start="29180" i_stop="29069" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.389">
            <gDNA_exon_boundary e_start="29068" e_stop="29033" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30200" stop="29959"/>
              <exon start="29466" stop="29181"/>
              <exon start="29068" stop="29033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTGAACTTTGCATTTTCCGATCGTAAAATTCAACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTG : CTTAAATGAGAGAATTGAGATTTATGTAGCCAACAT</gDNA_template>
            <first_frame> D  *  T  L  H  F  P  I  V  K  F  N  W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  F  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  :  L  K  *  E  N  *  D  L  C  S  Q  H </first_frame>
            <second_frame>  T  E  L  C  I  F  R  S  *  N  S  T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  F  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  C :   L  N  E  R  I  E  I  Y  V  A  N   </second_frame>
            <third_frame>   L  N  F  A  F  S  D  R  K  I  Q  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S   : A  *  M  R  E  L  R  F  M  *  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="29959"/>
                    <exon start="29466" stop="29312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50551" PGL_stop="46131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50551" e_stop="50517"/>
            <exon e_start="49425" e_stop="49344"/>
            <exon e_start="47597" e_stop="47458"/>
            <exon e_start="47370" e_stop="47292"/>
            <exon e_start="47183" e_stop="47120"/>
            <exon e_start="46650" e_stop="46559"/>
            <exon e_start="46424" e_stop="46359"/>
            <exon e_start="46210" e_stop="46131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.575" acc_prob="0.656" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.985"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50551" e_stop="50517" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50516" i_stop="49426" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49425" e_stop="49344" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49343" i_stop="47598" i_length="1746"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47597" e_stop="47458" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.575" acc_prob="0.656">
            <gDNA_intron_boundary i_start="47457" i_stop="47371" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47370" e_stop="47292" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47291" i_stop="47184" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47183" e_stop="47120" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47119" i_stop="46651" i_length="469"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="46650" e_stop="46559" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46558" i_stop="46425" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="46424" e_stop="46359" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46358" i_stop="46211" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="0.925">
            <gDNA_exon_boundary e_start="46210" e_stop="46131" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50551" stop="50517"/>
              <exon start="49425" stop="49344"/>
              <exon start="47597" stop="47458"/>
              <exon start="47370" stop="47292"/>
              <exon start="47183" stop="47120"/>
              <exon start="46650" stop="46559"/>
              <exon start="46424" stop="46359"/>
              <exon start="46210" stop="46131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50551" stop="50517"/>
              <exon start="49425" stop="49344"/>
              <exon start="47597" stop="47458"/>
              <exon start="47370" stop="47292"/>
              <exon start="47183" stop="47120"/>
              <exon start="46650" stop="46630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG : TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG : GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG : GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG : GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG : ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGA : ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAA : GAGGAAATCCAAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</gDNA_template>
            <first_frame> G  M  L  K  L  L  G  L  K  G  R  S :   E  P  Y  V  T  E  D  E  L  K  L  M  L  R  G  A  E  L  S  G  A  I  E  E  E  E  Q  :  D  M  I  E  N  V  L  E  I  K  D  T  H  V  R  E  V  M  T  P  L  V  D  V  V  A  I  D  A  S  A  T  L  V  D  F  H  S  L  W  V  T  H  Q  Y  S  R :   V  P  V  F  E  Q  R  I  D  N  I  V  G  I  A  Y  A  M  D  L  L  D  Y  V  Q  K  :  G  E  L  L  E  S  S  I  V  G  D  I  A  H  K  P  A  Y  F  V  P   : D  S  M  S  V  W  N  L  L  R  E  F  R  I  R  K  V  H  M  A  V  V  L  N  E  Y  G  G  T  I  G  :  I  V  T  L  E  D  V  V  E  E  I  V  G  E  I  F  D  E  N  D  S  K  :  E  E  I  Q  E  K  N  W  L  Y  C  H  A  G  *  G  N  I  R  C  *  C  K  Y  L  H   </first_frame>
            <second_frame>  E  C  *  N  S  S  A  *  K  E  E   : V  N  H  M  S  L  R  M  N  *  S  *  C  C  V  G  R  S  *  V  A  Q  L  R  R  K  S  R :   I  *  L  K  M  C  W  R  L  K  T  L  M  S  G  R  *  *  H  L  L  L  M  L  L  Q  S  M  P  V  Q  R  *  L  I  S  I  V  C  G  *  H  I  S  T  P   : G  C  P  F  L  S  N  V  *  I  I  L  L  A  L  H  M  P  W  I  S  *  I  M  Y  K  R :   E  N  C  W  K  V  L  L  W  E  T  L  H  I  N  L  H  T  L  F  P  :  I  L  C  Q  C  G  T  F  L  E  S  S  A  S  E  R  Y  T  W  L  L  F  L  M  N  M  E  E  P  L  E :   L  *  P  L  K  M  W  S  R  K  L  L  A  K  S  L  T  K  M  I  Q  K :   R  K  S  K  K  K  T  G  Y  I  V  M  R  A  E  G  I  Y  D  V  D  A  N  T  S  I  </second_frame>
            <third_frame>   N  A  K  T  P  R  L  E  R  K  K  :  *  T  I  C  H  *  G  *  I  E  V  D  A  A  W  G  G  V  K  W  R  N  *  G  G  R  A   : G  Y  D  *  K  C  V  G  D  *  R  H  S  C  Q  G  G  N  D  T  S  C  *  C  C  C  N  R  C  Q  C  N  V  S  *  F  P  *  F  V  G  D  T  S  V  L  Q  :  G  A  R  F  *  A  T  Y  R  *  Y  C  W  H  C  I  C  H  G  S  P  R  L  C  T  K   : G  R  T  A  G  K  F  Y  C  G  R  H  C  T  *  T  C  I  L  C  S  R :   F  Y  V  S  V  E  P  S  *  R  V  P  H  Q  K  G  T  H  G  C  C  S  *  *  I  W  R  N  H  W   : N  C  N  P  *  R  C  G  R  G  N  C  W  R  N  L  *  R  K  *  F  K   : R  G  N  P  R  K  K  L  A  I  L  S  C  G  L  R  E  Y  T  M  L  M  Q  I  P  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50551" stop="50517"/>
                    <exon start="49425" stop="49344"/>
                    <exon start="47597" stop="47458"/>
                    <exon start="47370" stop="47292"/>
                    <exon start="47183" stop="47120"/>
                    <exon start="46650" stop="46559"/>
                    <exon start="46424" stop="46359"/>
                    <exon start="46210" stop="46166"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHSLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDYVQKGELLESSIVGDIAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQEKNWLYCHAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55535" PGL_stop="53987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55535" e_stop="55498"/>
            <exon e_start="55408" e_stop="55103"/>
            <exon e_start="55006" e_stop="54943"/>
            <exon e_start="54860" e_stop="54621"/>
            <exon e_start="54538" e_stop="53987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55535" e_stop="55498" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55497" i_stop="55409" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55408" e_stop="55103" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55102" i_stop="55007" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55006" e_stop="54943" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54942" i_stop="54861" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54860" e_stop="54621" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54620" i_stop="54539" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="54538" e_stop="53987" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55535" stop="55498"/>
              <exon start="55408" stop="55103"/>
              <exon start="55006" stop="54943"/>
              <exon start="54860" stop="54846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55532" stop="55498"/>
              <exon start="55408" stop="55103"/>
              <exon start="55006" stop="54943"/>
              <exon start="54860" stop="54621"/>
              <exon start="54538" stop="54464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54854" stop="54621"/>
              <exon start="54538" stop="54058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54804" stop="54621"/>
              <exon start="54538" stop="54048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213980" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54720" stop="54621"/>
              <exon start="54538" stop="54000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54719" stop="54621"/>
              <exon start="54538" stop="53987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54719" stop="54621"/>
              <exon start="54538" stop="54152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54719" stop="54621"/>
              <exon start="54538" stop="54339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG : GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG : GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG : TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG : GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</gDNA_template>
            <first_frame> G  H  L  V  E  R  L  S  S  T  I  F  R :   S  D  M  L  H  T  C  L  S  C  Y  E  D  L  H  A  L  S  L  V  G  R  R  L  E  L  L  V  G  Q  A  V  V  N  Q  L  *  Y  R  P  F  S  A  *  L  I  L  L  L  D  K  *  R  *  M  V  P  T  S  P  Q  L  V  C  M  I  C  G  L  D  *  V  S  F  R  R  I  R  L  C  L  R  E  L  Y  A  A  T  *  I  R  S  K  S  I  Q  M  I  K  F  G  R :   R  W  T  N  V  N  *  E  T  K  L  G  R  R  K  A  S  Y  I  L  Q  :  Y  L  R  M  E  R  T  G  A  *  A  K  G  S  W  S  V  L  A  A  C  Y  S  K  K  A  R  S  L  S  *  T  R  L  Q  H  L  L  T  L  Q  L  T  I  *  F  S  K  L  *  G  C  T  S  L  I  P  L  L  *  P  S  L  I  G  *  H  L  F  L  I  V  T  W  S  Y  Y  *  N  T  :  G  *  L  L  N  M  T  L  Q  A  S  Y  *  R  T  N  P  R  C  L  P  S  S  W  L  S  I  V  *  D  Q  I  Q  V  L  R  M  P  Q  T  H  E  S  F  I  D  H  V  I  R  *  *  *  *  K  L  V  H  M  N  L  R  H  *  H  S  F  E  F  P  S  V  D  D  R  A  *  T  R  T  R  E  M  Q  L  I  A  C  D  L  R  E  T  A  T  I  L  W  Q  *  K  K  F  I  Y  L  C  N  I  D  S  E  M  A  S  V  F  F  R  L  F  D  V  K  K  C  F  K  Y  L  F  T  N  N  L  N  V  C  *  V  N  *  L  V  S  *  E  C  T  D  F  V  P  Y  C  K  S  S  K  T  F  C  I  E  L  E  V  N  L  Q  V  F  E  F  F  S  T  S  K  T  E  I  L  L </first_frame>
            <second_frame>  A  I  S  W  R  G  *  V  Q  Q  S  S   : G  P  I  C  S  T  H  A  S  R  V  T  R  T  Y  M  H  F  L  W  W  E  E  D  W  N  C  W  *  D  R  Q  W  *  I  N  F  N  T  D  P  F  P  H  S  *  S  C  C  W  T  N  K  D  R  W  Y  Q  H  L  H  N  W  S  A  *  S  A  V  *  I  E  Y  H  S  A  G  S  D  Y  V  *  G  N  C  T  Q  Q  P  R  S  A  R  R  A  F  R  *  S  N  L  G   : G  A  G  Q  M  S  T  R  R  R  S  *  E  E  G  R  Q  A  I  F  Y  S :   I  *  E  W  R  E  L  E  R  R  P  K  A  A  G  L  S  W  P  R  A  T  Q  K  K  Q  G  P  C  P  R  R  G  Y  S  I  C  *  H  C  N  *  Q  S  N  S  A  N  S  E  A  A  L  H  *  F  H  C  Y  N  H  R  S  *  D  N  I  C  S  *  *  *  H  G  P  T  I  R  T  R :   A  D  C  *  I  *  H  S  R  Q  V  I  R  E  R  I  L  V  V  C  Q  A  R  G  *  V  *  Y  E  I  K  F  K  F  *  E  C  L  R  H  M  N  L  S  L  T  T  L  Y  D  D  D  D  E  N  *  Y  T  *  I  S  D  T  N  T  L  L  S  F  H  P  W  T  I  E  L  E  Q  E  P  A  K  C  S  S  L  H  V  T  *  G  K  L  Q  Q  S  Y  G  S  E  R  S  S  S  I  C  A  I  L  I  V  K  W  H  L  F  S  L  D  F  L  M  *  K  N  V  L  S  I  C  L  P  I  I  *  M  Y  V  E  S  I  D  *  L  V  K  S  A  R  I  L  F  L  I  V  K  V  V  K  L  F  V  L  S  W  K  *  T  Y  K  C  L  N  F  S  L  Q  A  K  L  K  Y  F   </second_frame>
            <third_frame>   P  S  R  G  E  V  E  F  N  N  L  Q  :  V  R  Y  A  P  H  M  P  L  V  L  R  G  L  T  C  T  F  F  G  G  K  K  T  G  I  V  G  R  T  G  S  G  K  S  T  L  I  Q  T  L  F  R  I  V  D  P  V  V  G  Q  I  K  I  D  G  T  N  I  S  T  I  G  L  H  D  L  R  S  R  L  S  I  I  P  Q  D  P  T  M  F  E  G  T  V  R  S  N  L  D  P  L  E  E  H  S  D  D  Q  I  W  E  :  A  L  D  K  C  Q  L  G  D  E  V  R  K  K  E  G  K  L  Y  S  T   : V  S  E  N  G  E  N  W  S  V  G  Q  R  Q  L  V  C  L  G  R  V  L  L  K  K  S  K  V  L  V  L  D  E  A  T  A  S  V  D  T  A  T  D  N  L  I  Q  Q  T  L  R  L  H  F  T  D  S  T  V  I  T  I  A  H  R  I  T  S  V  L  D  S  D  M  V  L  L  L  E  H   : G  L  I  A  E  Y  D  T  P  G  K  L  L  E  N  E  S  S  L  F  A  K  L  V  A  E  Y  S  M  R  S  N  S  S  F  E  N  A  S  D  T  *  I  F  H  *  P  R  Y  T  M  M  M  M  K  T  S  T  H  E  S  Q  T  L  T  L  F  *  V  S  I  R  G  R  *  S  L  N  K  N  P  R  N  A  A  H  C  M  *  L  E  G  N  C  N  N  L  M  A  V  K  E  V  H  L  F  V  Q  Y  *  *  *  N  G  I  C  F  L  *  T  F  *  C  E  K  M  F  *  V  F  V  Y  Q  *  F  E  C  M  L  S  Q  L  I  S  *  L  R  V  H  G  F  C  S  L  L  *  K  *  *  N  F  L  Y  *  V  G  S  E  L  T  S  V  *  I  F  L  Y  K  Q  N  *  N  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55533" stop="55498"/>
                    <exon start="55408" stop="55103"/>
                    <exon start="55006" stop="54943"/>
                    <exon start="54860" stop="54621"/>
                    <exon start="54538" stop="54414"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSRGEVEFNNLQVRYAPHMPLVLRGLTCTFFGGKKTGIVGRTGSGKSTLIQTLFRIVDPVVGQIKIDGTNISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEHSDDQIWEALDKCQLGDEVRKKEGKLYSTVSENGENWSVGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFTDSTVITIAHRITSVLDSDMVLLLEHGLIAEYDTPGKLLENESSLFAKLVAEYSMRSNSSFENASDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="56291" PGL_stop="55590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56291" e_stop="56211"/>
            <exon e_start="56110" e_stop="55816"/>
            <exon e_start="55712" e_stop="55590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.847" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56291" e_stop="56211" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.847" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56210" i_stop="56111" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56110" e_stop="55816" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="55815" i_stop="55713" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55712" e_stop="55590" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56291" stop="56211"/>
              <exon start="56110" stop="55816"/>
              <exon start="55712" stop="55590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG : CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA : GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</gDNA_template>
            <first_frame> I  I  A  V  M  S  Q  V  A  W  Q  I  F  I  V  F  I  P  V  I  A  I  C  I  W  L  E  :  Q  Y  Y  I  P  A  A  R  E  L  A  R  L  N  G  T  C  K  A  P  V  I  Q  H  F  A  E  T  I  S  G  S  S  T  I  R  S  F  D  Q  E  S  R  F  Q  D  A  S  M  R  L  I  D  N  Y  S  R  P  K  F  H  T  A  A  A  M  E  W  L  C  M  R  L  D  M  L  S  L  I  T  F  A  F  A  L  I  F  L  I  S  L  P  V  G  T  I  D  P   : S  V  A  G  L  A  V  T  Y  G  L  N  L  N  V  L  Q  A  W  V  V  W  N  L  C  M  M  E  N  K  I  I  S  V  E  R  I  L  Q  Y  A  </first_frame>
            <second_frame>  S  L  Q  *  C  H  K  S  H  G  R  S  S  *  S  L  S  Q  S  L  Q  F  A  F  G  W  S :   N  I  T  S  L  Q  H  E  N  W  H  V  *  M  G  H  A  K  L  Q  *  Y  S  I  L  L  K  Q  F  Q  D  Q  A  Q  F  E  V  S  I  K  N  L  D  S  R  M  Q  A  *  D  *  *  T  I  I  L  G  L  S  F  T  Q  L  L  R  W  S  G  F  A  C  V  W  I  C  Y  L  *  L  L  L  L  S  R  *  F  S  *  S  L  F  L  L  E  Q  S  I  Q  :  V  L  L  A  *  L  L  H  M  D  L  I  *  T  Y  C  K  L  G  L  Y  G  I  F  V  *  W  K  I  K  L  F  P  S  K  E  Y  F  S  M  L </second_frame>
            <third_frame>   H  C  S  N  V  T  S  R  M  A  D  L  H  S  L  Y  P  S  H  C  N  L  H  L  V  G   : A  I  L  H  P  C  S  T  R  T  G  T  S  K  W  D  M  Q  S  S  S  N  T  A  F  C  *  N  N  F  R  I  K  H  N  S  K  F  R  S  R  I  *  I  P  G  C  K  H  E  I  N  R  Q  L  F  S  A  *  V  S  H  S  C  C  D  G  V  A  L  H  A  F  G  Y  V  I  S  D  Y  F  C  F  R  V  D  F  L  D  L  S  S  C  W  N  N  R  S  K :   C  C  W  L  S  C  Y  I  W  T  *  S  K  R  T  A  S  L  G  C  M  E  S  L  Y  D  G  K  *  N  Y  F  R  R  K  N  T  S  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56291" stop="56211"/>
                    <exon start="56110" stop="55816"/>
                    <exon start="55712" stop="55591"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIAVMSQVAWQIFIVFIPVIAICIWLEQYYIPAARELARLNGTCKAPVIQHFAETISGSSTIRSFDQESRFQDASMRLIDNYSRPKFHTAAAMEWLCMRLDMLSLITFAFALIFLISLPVGTIDPSVAGLAVTYGLNLNVLQAWVVWNLCMMENKIISVERILQYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="57862" PGL_stop="57068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57862" e_stop="57068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="57862" e_stop="57068" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57862" stop="57376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57834" stop="57083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57829" stop="57068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57829" stop="57273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57827" stop="57305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57815" stop="57288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57814" stop="57196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57814" stop="57205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57814" stop="57347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57802" stop="57371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57796" stop="57236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57664" stop="57153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  V  I  I  *  Y  C  S  *  T  K  K  K  K  K  R  E  Y  E  L  V  S  S  S  C  S  Y  F  S  L  L  C  F  S  F  T  I  S  K  M  Q  S  E  R  Q  K  S  P  S  T  N  K  E  R  L  R  Q  S  L  P  F  S  F  M  G  S  K  H  R  L  L  L  L  V  R  R  K  M  *  P  E  N  Q  P  D  K  C  S  H  R  L  P  S  Q  Y  L  R  P  N  S  G  S  R  R  R  P  S  I  S  R  N  I  G  I  S  S  C  Y  *  S  H  R  N  N  S  T  C  N  C  E  A  H  K  S  Q  N  V  K  A  Q  L  H  *  P  Y  R  S  D  P  *  I  P  *  S  A  E  E  F  D  V  A  R  V  E  L  Q  S  I  Y  R  N  N  P  F  F  P  L  S  A  S  E  F  A  S  D  V  L  R  S  *  Q  T  H  R  N  N  T  G  I  V  W  E  I  *  R  T  K  Y  T  R  S  L  P  F  T  Q  Q  L  D  R  T  C  A  G  I  F  R  *  F  E  F  F  H  A  *  F  L  Q  E  *  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  K  L  *  Y  N  I  V  H  K  Q  K  K  K  R  R  E  N  M  N  L  S  L  L  L  V  V  I  F  L  C  F  A  S  P  S  L  S  V  R  C  N  P  K  D  K  K  V  L  L  Q  I  K  K  D  L  G  N  P  Y  H  L  A  S  W  D  P  N  T  D  C  C  Y  W  Y  V  V  K  C  D  R  K  T  N  R  I  N  A  L  T  V  F  Q  A  N  I  S  G  Q  I  P  A  A  V  G  D  L  P  Y  L  E  T  L  E  F  H  H  V  T  N  L  T  G  T  I  P  P  A  I  A  K  L  T  N  L  K  M  L  R  L  S  F  T  N  L  T  G  P  I  P  E  F  L  S  Q  L  K  N  L  T  L  L  E  L  N  Y  N  Q  F  T  G  T  I  P  S  S  L  S  Q  L  P  N  L  L  A  M  Y  L  D  R  N  K  L  T  G  T  I  P  E  S  F  G  R  F  K  G  P  N  I  P  D  L  Y  L  S  H  N  S  L  T  G  H  V  P  A  S  L  G  D  L  N  F  S  T  L  D  F  S  R  N  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   S  Y  N  I  I  L  F  I  N  K  K  K  K  E  E  R  I  *  T  C  L  F  F  L  *  L  F  F  F  A  L  L  L  L  H  Y  Q  *  D  A  I  R  K  T  K  K  S  F  Y  K  *  R  K  T  *  A  I  L  T  I  *  L  H  G  I  Q  T  Q  I  A  V  T  G  T  S  *  N  V  T  G  K  P  T  G  *  M  L  S  P  S  S  K  P  I  S  P  A  K  F  R  Q  P  S  E  T  F  H  I  S  K  H  W  N  F  I  M  L  L  I  S  P  E  Q  F  H  L  Q  L  R  S  S  Q  I  S  K  C  *  G  S  A  S  L  T  L  Q  V  R  S  L  N  S  L  V  S  *  R  I  *  R  C  S  S  *  I  T  I  N  L  P  E  Q  S  L  L  P  S  L  S  F  R  I  C  *  R  C  T  *  I  V  T  N  S  P  E  Q  Y  R  N  R  L  G  D  L  K  D  Q  I  Y  Q  I  S  T  F  H  T  T  A  *  P  D  M  C  R  H  L  *  V  I  *  I  F  P  R  L  I  S  P  G  I  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57852" stop="57070"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNIVHKQKKKRRENMNLSLLLVVIFLCFASPSLSVRCNPKDKKVLLQIKKDLGNPYHLASWDPNTDCCYWYVVKCDRKTNRINALTVFQANISGQIPAAVGDLPYLETLEFHHVTNLTGTIPPAIAKLTNLKMLRLSFTNLTGPIPEFLSQLKNLTLLELNYNQFTGTIPSSLSQLPNLLAMYLDRNKLTGTIPESFGRFKGPNIPDLYLSHNSLTGHVPASLGDLNFSTLDFSRNKLFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65291" PGL_stop="72996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65291" e_stop="65918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="65291" e_stop="65918" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65291" stop="65918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65296" stop="65839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65298" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65321" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65403" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65480" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65529" stop="65767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</gDNA_template>
            <first_frame> Q  N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W  G  S  V  I  R  *  C  I  F  S  Y  T  H  Q  L  *  *  L  C  L  D  P  *  *  V  G  N  V  R  </first_frame>
            <second_frame>  K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  V  R  L  F  V  N  V  F  F  L  T  R  T  N  Y  N  N  C  A  S  I  P  S  K  L  G  M  L  G </second_frame>
            <third_frame>   K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G  F  G  Y  S  L  M  Y  F  F  L  H  A  P  T  I  I  I  V  P  R  S  L  V  S  W  E  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65292" stop="65609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65292" e_stop="65831"/>
            <exon e_start="67516" e_stop="67549"/>
            <exon e_start="69162" e_stop="69218"/>
            <exon e_start="69603" e_stop="69627"/>
            <exon e_start="70744" e_stop="70776"/>
            <exon e_start="72967" e_stop="72996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.005" e_score="0.735"/>
          <exon-intron don_prob="0.000" acc_prob="0.398" e_score="0.649"/>
          <exon-intron don_prob="0.972" acc_prob="0.638" e_score="0.400"/>
          <exon-intron don_prob="0.876" acc_prob="0.431" e_score="0.424"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65292" e_stop="65831" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65832" i_stop="67515" i_length="1684"/>
          </intron>
          <exon e_serial="2" e_score="0.735">
            <gDNA_exon_boundary e_start="67516" e_stop="67549" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.005">
            <gDNA_intron_boundary i_start="67550" i_stop="69161" i_length="1612"/>
          </intron>
          <exon e_serial="3" e_score="0.649">
            <gDNA_exon_boundary e_start="69162" e_stop="69218" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.398">
            <gDNA_intron_boundary i_start="69219" i_stop="69602" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="69603" e_stop="69627" e_length="25"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.638">
            <gDNA_intron_boundary i_start="69628" i_stop="70743" i_length="1116"/>
          </intron>
          <exon e_serial="5" e_score="0.424">
            <gDNA_exon_boundary e_start="70744" e_stop="70776" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.431">
            <gDNA_intron_boundary i_start="70777" i_stop="72966" i_length="2190"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="72967" e_stop="72996" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65298" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65321" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65403" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65454" stop="65831"/>
              <exon start="67516" stop="67549"/>
              <exon start="69162" stop="69218"/>
              <exon start="69603" stop="69627"/>
              <exon start="70744" stop="70776"/>
              <exon start="72967" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65480" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65529" stop="65767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG : GTTGTCAAAATACAACAAAAAAAGGAAAAAAGAA : AAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAAA : ATCAAAATTGGGGATTGGATTTAAT : GTCGCACATTGCTTGACTTATTCAAAAATGAAG : AATATCGAAGACGGGATAGTAAACAAAAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  :  V  V  K  I  Q  Q  K  K  E  K  R   : K  K  K  N  K  R  Y  N  N  T  R  K  *  L  T  R  *  Q  K   : N  Q  N  W  G  L  D  L  M :   S  H  I  A  *  L  I  Q  K  *  R :   I  S  K  T  G  *  *  T  K   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G :   L  S  K  Y  N  K  K  R  K  K  E  :  K  K  K  T  R  D  T  I  I  L  G  S  N  *  Q  D  N  K  K  :  I  K  I  G  D  W  I  *   : C  R  T  L  L  D  L  F  K  N  E   : E  Y  R  R  R  D  S  K  Q  K  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W   : G  C  Q  N  T  T  K  K  G  K  K  K :   K  K  K  Q  E  I  Q  *  Y  *  E  V  I  D  K  I  T  K  K :   S  K  L  G  I  G  F  N  :  V  A  H  C  L  T  Y  S  K  M  K  :  N  I  E  D  G  I  V  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65292" stop="65609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65292" e_stop="65834"/>
            <exon e_start="69162" e_stop="69217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.005" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65292" e_stop="65834" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.005">
            <gDNA_intron_boundary i_start="65835" i_stop="69161" i_length="3327"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="69162" e_stop="69217" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65298" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65300" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65321" stop="65831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65400" stop="65834"/>
              <exon start="69162" stop="69217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65403" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65480" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65529" stop="65767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTT : AAAAAAAAAACAAGAGATACAATAATACTAGGAAGTAATTGACAAGATAACAAAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  V  :  K  K  K  T  R  D  T  I  I  L  G  S  N  *  Q  D  N  K   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G  L :   K  K  K  Q  E  I  Q  *  Y  *  E  V  I  D  K  I  T  K  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W  G   : *  K  K  N  K  R  Y  N  N  T  R  K  *  L  T  R  *  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65292" stop="65609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65292" e_stop="65825"/>
            <exon e_start="67430" e_stop="67446"/>
            <exon e_start="67522" e_stop="67549"/>
            <exon e_start="68341" e_stop="68390"/>
            <exon e_start="69603" e_stop="69627"/>
            <exon e_start="69765" e_stop="69771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.824"/>
          <exon-intron don_prob="0.000" acc_prob="0.333" e_score="0.786"/>
          <exon-intron don_prob="0.829" acc_prob="0.398" e_score="0.400"/>
          <exon-intron don_prob="0.972" acc_prob="0.924" e_score="0.600"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65292" e_stop="65825" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65826" i_stop="67429" i_length="1604"/>
          </intron>
          <exon e_serial="2" e_score="0.824">
            <gDNA_exon_boundary e_start="67430" e_stop="67446" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67447" i_stop="67521" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.786">
            <gDNA_exon_boundary e_start="67522" e_stop="67549" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.333">
            <gDNA_intron_boundary i_start="67550" i_stop="68340" i_length="791"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="68341" e_stop="68390" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.829" acc_prob="0.398">
            <gDNA_intron_boundary i_start="68391" i_stop="69602" i_length="1212"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="69603" e_stop="69627" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.924">
            <gDNA_intron_boundary i_start="69628" i_stop="69764" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="69765" e_stop="69771" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65292" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65295" stop="65771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65298" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65346" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65403" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65444" stop="65825"/>
              <exon start="67430" stop="67446"/>
              <exon start="67522" stop="67549"/>
              <exon start="68341" stop="68390"/>
              <exon start="69603" stop="69627"/>
              <exon start="69765" stop="69771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65480" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65529" stop="65767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT : AAAGAAAATAGAAAAAA : AAAATACAACAAAAAAAGGAAAAAAGAA : AAAGTACAAGTTCTTCTGTTGTGCCCTTCTTGTCCACATTGTCCACAACA : ATCAAAATTGGGGATTGGATTTAAT : GGACAAA</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  :  K  E  N  R  K  K :   K  Y  N  K  K  R  K  K  E  :  K  V  Q  V  L  L  L  C  P  S  C  P  H  C  P  Q  Q :   S  K  L  G  I  G  F  N  :  G  Q  </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L :   K  K  I  E  K   : K  N  T  T  K  K  G  K  K  K :   K  Y  K  F  F  C  C  A  L  L  V  H  I  V  H  N   : N  Q  N  W  G  L  D  L  M :   D  K </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S   : *  R  K  *  K  K  :  K  I  Q  Q  K  K  E  K  R   : K  S  T  S  S  S  V  V  P  F  L  S  T  L  S  T  T  :  I  K  I  G  D  W  I  *   : W  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65292" stop="65609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73342" PGL_stop="65444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73342" e_stop="73328"/>
            <exon e_start="72785" e_stop="72763"/>
            <exon e_start="72059" e_stop="71996"/>
            <exon e_start="70102" e_stop="70074"/>
            <exon e_start="65823" e_stop="65444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.128" acc_prob="0.000" e_score="0.867"/>
          <exon-intron don_prob="0.333" acc_prob="0.678" e_score="0.652"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.469"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.862"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="73342" e_stop="73328" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.128" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73327" i_stop="72786" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="0.652">
            <gDNA_exon_boundary e_start="72785" e_stop="72763" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.333" acc_prob="0.678">
            <gDNA_intron_boundary i_start="72762" i_stop="72060" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.469">
            <gDNA_exon_boundary e_start="72059" e_stop="71996" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71995" i_stop="70103" i_length="1893"/>
          </intron>
          <exon e_serial="4" e_score="0.862">
            <gDNA_exon_boundary e_start="70102" e_stop="70074" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70073" i_stop="65824" i_length="4250"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="65823" e_stop="65444" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73342" stop="73328"/>
              <exon start="72785" stop="72763"/>
              <exon start="72059" stop="71996"/>
              <exon start="70102" stop="70074"/>
              <exon start="65823" stop="65444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553151" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTATTCTTAAAA : TGTGATCCCAAAAATTGATCTTA : TTTAATTAATCTATGGACTTGGAAACTGGACTAGATACACAAGTGATTTATTTGATTTTTTTTT : TTTTGTTTTTATTTTTGTTTTTGTTTTTA : CTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</gDNA_template>
            <first_frame> L  L  F  L  K  :  C  D  P  K  N  *  S  Y :   L  I  N  L  W  T  W  K  L  D  *  I  H  K  *  F  I  *  F  F  F  :  F  C  F  Y  F  C  F  C  F  Y :   S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R  R  S  L  </first_frame>
            <second_frame>  F  Y  S  *  N :   V  I  P  K  I  D  L   : I  *  L  I  Y  G  L  G  N  W  T  R  Y  T  S  D  L  F  D  F  F  F :   F  V  F  I  F  V  F  V  F   : T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F  G  G  L  F </second_frame>
            <third_frame>   F  I  L  K   : M  *  S  Q  K  L  I  L  :  F  N  *  S  M  D  L  E  T  G  L  D  T  Q  V  I  Y  L  I  F  F   : F  L  F  L  F  L  F  L  F  L  :  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  E  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72004" stop="71996"/>
                    <exon start="70102" stop="70074"/>
                    <exon start="65823" stop="65640"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFCFYFCFCFYSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67560" e_stop="67529"/>
            <exon e_start="65822" e_stop="65557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.719"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.719">
            <gDNA_exon_boundary e_start="67560" e_stop="67529" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67528" i_stop="65823" i_length="1706"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="65822" e_stop="65557" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67560" stop="67529"/>
              <exon start="65822" stop="65557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTTGTTGCTTCTTTTTTCCTTTTTTTGTT : TCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</gDNA_template>
            <first_frame> M  F  V  A  S  F  F  L  F  L  F :   Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  </first_frame>
            <second_frame>  C  L  L  L  L  F  S  F  F  C   : F  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q </second_frame>
            <third_frame>   V  C  C  F  F  F  P  F  F  V  :  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67558" stop="67529"/>
                    <exon start="65822" stop="65640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCCFFFPFFVSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="70728" e_stop="70681"/>
            <exon e_start="70531" e_stop="70504"/>
            <exon e_start="70105" e_stop="70075"/>
            <exon e_start="69188" e_stop="69160"/>
            <exon e_start="67557" e_stop="67522"/>
            <exon e_start="65834" e_stop="65454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.575" e_score="0.521"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.357"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.806"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.724"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.521">
            <gDNA_exon_boundary e_start="70728" e_stop="70681" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="70680" i_stop="70532" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.357">
            <gDNA_exon_boundary e_start="70531" e_stop="70504" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70503" i_stop="70106" i_length="398"/>
          </intron>
          <exon e_serial="3" e_score="0.806">
            <gDNA_exon_boundary e_start="70105" e_stop="70075" e_length="31"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70074" i_stop="69189" i_length="886"/>
          </intron>
          <exon e_serial="4" e_score="0.724">
            <gDNA_exon_boundary e_start="69188" e_stop="69160" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69159" i_stop="67558" i_length="1602"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="67557" e_stop="67522" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67521" i_stop="65835" i_length="1687"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="65834" e_stop="65454" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70728" stop="70681"/>
              <exon start="70531" stop="70504"/>
              <exon start="70105" stop="70075"/>
              <exon start="69188" stop="69160"/>
              <exon start="67557" stop="67522"/>
              <exon start="65834" stop="65454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555084" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCAATATAAATACCAAACCCCGATAAAAATATGATGCAAGAGCTT : GCATATGGCCGCACATGGCCACGAATTA : AATTTTTGTTTTTATTTTTGTTTTTGTTTTT : TATTATTGTATCTCTTGTTTTTTTTTTCT : TTTGTTGCTTCTTTTTTCCTTTTTTTGTTGTATTTT : AACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</gDNA_template>
            <first_frame> V  S  I  *  I  P  N  P  D  K  N  M  M  Q  E  L  :  A  Y  G  R  T  W  P  R  I   : K  F  L  F  L  F  L  F  L  F  F :   I  I  V  S  L  V  F  F  F   : F  C  C  F  F  F  P  F  F  V  V  F   : *  P  Q  Q  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  </first_frame>
            <second_frame>  F  Q  Y  K  Y  Q  T  P  I  K  I  *  C  K  S  L :   H  M  A  A  H  G  H  E  L  :  N  F  C  F  Y  F  C  F  C  F   : L  L  L  Y  L  L  F  F  F  S  :  F  V  A  S  F  F  L  F  L  L  Y  F  :  N  P  N  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R </second_frame>
            <third_frame>   F  N  I  N  T  K  P  R  *  K  Y  D  A  R  A   : C  I  W  P  H  M  A  T  N  * :   I  F  V  F  I  F  V  F  V  F  :  Y  Y  C  I  S  C  F  F  F  L :   L  L  L  L  F  S  F  F  C  C  I  L :   T  P  T  T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70691" stop="70681"/>
                    <exon start="70531" stop="70504"/>
                    <exon start="70105" stop="70075"/>
                    <exon start="69188" stop="69160"/>
                    <exon start="67557" stop="67522"/>
                    <exon start="65834" stop="65640"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKSLHMAAHGHELNFCFYFCFCFLLLYLLFFFSFVASFFLFLLYFNPNNSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="77002" PGL_stop="84231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77002" e_stop="77338"/>
            <exon e_start="78385" e_stop="78678"/>
            <exon e_start="79788" e_stop="79903"/>
            <exon e_start="80091" e_stop="80592"/>
            <exon e_start="80709" e_stop="80747"/>
            <exon e_start="81259" e_stop="81543"/>
            <exon e_start="82051" e_stop="82190"/>
            <exon e_start="82856" e_stop="83333"/>
            <exon e_start="83589" e_stop="84231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.980" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="77002" e_stop="77338" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77339" i_stop="78384" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78385" e_stop="78678" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.223">
            <gDNA_intron_boundary i_start="78679" i_stop="79787" i_length="1109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79788" e_stop="79903" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.737">
            <gDNA_intron_boundary i_start="79904" i_stop="80090" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80091" e_stop="80592" e_length="502"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80593" i_stop="80708" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80709" e_stop="80747" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="80748" i_stop="81258" i_length="511"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81259" e_stop="81543" e_length="285"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="82051" e_stop="82190" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82191" i_stop="82855" i_length="665"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82856" e_stop="83333" e_length="478"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="83589" e_stop="84231" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77002" stop="77338"/>
              <exon start="78385" stop="78583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77033" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77036" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77038" stop="77338"/>
              <exon start="78385" stop="78622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77038" stop="77338"/>
              <exon start="78385" stop="78617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77042" stop="77338"/>
              <exon start="78385" stop="78447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77047" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77049" stop="77338"/>
              <exon start="78385" stop="78621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77049" stop="77338"/>
              <exon start="78385" stop="78593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77051" stop="77338"/>
              <exon start="78385" stop="78562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77051" stop="77338"/>
              <exon start="78385" stop="78517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77053" stop="77338"/>
              <exon start="78385" stop="78678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77053" stop="77338"/>
              <exon start="78385" stop="78678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77055" stop="77338"/>
              <exon start="78385" stop="78645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77060" stop="77338"/>
              <exon start="78385" stop="78422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77062" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77063" stop="77338"/>
              <exon start="78385" stop="78644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77064" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77067" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77068" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77085" stop="77338"/>
              <exon start="78385" stop="78589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77089" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77226" stop="77338"/>
              <exon start="78385" stop="78678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77313" stop="77338"/>
              <exon start="78385" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78645" stop="78678"/>
              <exon start="79788" stop="79903"/>
              <exon start="80091" stop="80533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79888" stop="79903"/>
              <exon start="80091" stop="80592"/>
              <exon start="80709" stop="80747"/>
              <exon start="81259" stop="81543"/>
              <exon start="82051" stop="82115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79888" stop="79903"/>
              <exon start="80091" stop="80592"/>
              <exon start="80709" stop="80747"/>
              <exon start="81259" stop="81543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80548" stop="80592"/>
              <exon start="80709" stop="80747"/>
              <exon start="81259" stop="81470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80592"/>
              <exon start="80709" stop="80747"/>
              <exon start="81259" stop="81543"/>
              <exon start="82051" stop="82161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80549" stop="80592"/>
              <exon start="80709" stop="80747"/>
              <exon start="81259" stop="81543"/>
              <exon start="82051" stop="82154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82101" stop="82190"/>
              <exon start="82856" stop="83333"/>
              <exon start="83589" stop="83760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82126" stop="82190"/>
              <exon start="82856" stop="83333"/>
              <exon start="83589" stop="83904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82980" stop="83333"/>
              <exon start="83589" stop="83968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82992" stop="83333"/>
              <exon start="83589" stop="83869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="83333"/>
              <exon start="83589" stop="84222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="83333"/>
              <exon start="83589" stop="84218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83234" stop="83333"/>
              <exon start="83589" stop="84032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83309" stop="83333"/>
              <exon start="83589" stop="84013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83320" stop="83333"/>
              <exon start="83589" stop="84012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83333" stop="83333"/>
              <exon start="83589" stop="84227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="84069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83639" stop="84113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="84231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT : TGAAACAAGGAGTGTATTCGCGGTCGCCTAGATTTGATGGCACTCCCCAGCAAATTCTTACTGTCCAGGATGTAGCTACCCAAGTCAAACCTCCAGGATTATGGTTGAATATCCAG : CATGATTCCTTCTACAGCCAGCACAATCTGAGTATGAGAAGCTTTGTTGTTTCCCTATCTAGAAGTGTTATTGCCAACTATATTTCATCACCTGAGGTGAATTTCCTGCGAAGTATCGCATCGCGATTGAATCCACGAGTGACAAAGCGCGTTTTCCGGTTTCTCAACGAAGATGATATTGAGCCATCAACAAGTCAAACATATGGTTCTCTAGTGAAGAATCTCACATTTGTTAAAACCTTTGCCGCTGGGATTCTTGTTCCCAAACACTATATCTGGCCAACGGACAGCAGCTTGTACTTGCAGCCACATACATCGGTTGTTTCGGACGCTCATAAGGAAGGACTTGAGATTTATGCAGCCGACTTTGTTAATGATGTACCATTTGCTTATAATTATAGCTATGATCCTGTAGCTGAGTATTTATCCTTTATAGACAACGGTGAGTTCTCGGTGGACGGAGTGTTATCTGACTTCCCAATGTCTCCATCTGCGTCAGTAG : ATTGCTTCTCGCATTTGGGTGCGAATGATAAGCCTCAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTT</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S   : L  K  Q  G  V  Y  S  R  S  P  R  F  D  G  T  P  Q  Q  I  L  T  V  Q  D  V  A  T  Q  V  K  P  P  G  L  W  L  N  I  Q  :  H  D  S  F  Y  S  Q  H  N  L  S  M  R  S  F  V  V  S  L  S  R  S  V  I  A  N  Y  I  S  S  P  E  V  N  F  L  R  S  I  A  S  R  L  N  P  R  V  T  K  R  V  F  R  F  L  N  E  D  D  I  E  P  S  T  S  Q  T  Y  G  S  L  V  K  N  L  T  F  V  K  T  F  A  A  G  I  L  V  P  K  H  Y  I  W  P  T  D  S  S  L  Y  L  Q  P  H  T  S  V  V  S  D  A  H  K  E  G  L  E  I  Y  A  A  D  F  V  N  D  V  P  F  A  Y  N  Y  S  Y  D  P  V  A  E  Y  L  S  F  I  D  N  G  E  F  S  V  D  G  V  L  S  D  F  P  M  S  P  S  A  S  V   : D  C  F  S  H  L  G  A  N  D  K  P  Q   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P   </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A  :  *  N  K  E  C  I  R  G  R  L  D  L  M  A  L  P  S  K  F  L  L  S  R  M  *  L  P  K  S  N  L  Q  D  Y  G  *  I  S  S :   M  I  P  S  T  A  S  T  I  *  V  *  E  A  L  L  F  P  Y  L  E  V  L  L  P  T  I  F  H  H  L  R  *  I  S  C  E  V  S  H  R  D  *  I  H  E  *  Q  S  A  F  S  G  F  S  T  K  M  I  L  S  H  Q  Q  V  K  H  M  V  L  *  *  R  I  S  H  L  L  K  P  L  P  L  G  F  L  F  P  N  T  I  S  G  Q  R  T  A  A  C  T  C  S  H  I  H  R  L  F  R  T  L  I  R  K  D  L  R  F  M  Q  P  T  L  L  M  M  Y  H  L  L  I  I  I  A  M  I  L  *  L  S  I  Y  P  L  *  T  T  V  S  S  R  W  T  E  C  Y  L  T  S  Q  C  L  H  L  R  Q  *  :  I  A  S  R  I  W  V  R  M  I  S  L  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q  L :   E  T  R  S  V  F  A  V  A  *  I  *  W  H  S  P  A  N  S  Y  C  P  G  C  S  Y  P  S  Q  T  S  R  I  M  V  E  Y  P   : A  *  F  L  L  Q  P  A  Q  S  E  Y  E  K  L  C  C  F  P  I  *  K  C  Y  C  Q  L  Y  F  I  T  *  G  E  F  P  A  K  Y  R  I  A  I  E  S  T  S  D  K  A  R  F  P  V  S  Q  R  R  *  Y  *  A  I  N  K  S  N  I  W  F  S  S  E  E  S  H  I  C  *  N  L  C  R  W  D  S  C  S  Q  T  L  Y  L  A  N  G  Q  Q  L  V  L  A  A  T  Y  I  G  C  F  G  R  S  *  G  R  T  *  D  L  C  S  R  L  C  *  *  C  T  I  C  L  *  L  *  L  *  S  C  S  *  V  F  I  L  Y  R  Q  R  *  V  L  G  G  R  S  V  I  *  L  P  N  V  S  I  C  V  S  R :   L  L  L  A  F  G  C  E  *  *  A  S  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77146" stop="77338"/>
                    <exon start="78385" stop="78678"/>
                    <exon start="79788" stop="79903"/>
                    <exon start="80091" stop="80592"/>
                    <exon start="80709" stop="80747"/>
                    <exon start="81259" stop="81543"/>
                    <exon start="82051" stop="82190"/>
                    <exon start="82856" stop="83333"/>
                    <exon start="83589" stop="83887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2343</number_coding_nucleotides>
                  <number_encoded_amino_acids>781</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVSLKQGVYSRSPRFDGTPQQILTVQDVATQVKPPGLWLNIQHDSFYSQHNLSMRSFVVSLSRSVIANYISSPEVNFLRSIASRLNPRVTKRVFRFLNEDDIEPSTSQTYGSLVKNLTFVKTFAAGILVPKHYIWPTDSSLYLQPHTSVVSDAHKEGLEIYAADFVNDVPFAYNYSYDPVAEYLSFIDNGEFSVDGVLSDFPMSPSASVDCFSHLGANDKPQVTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84007" stop="84210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81162" e_stop="81170"/>
            <exon e_start="81259" e_stop="81543"/>
            <exon e_start="82051" e_stop="82190"/>
            <exon e_start="82856" e_stop="83333"/>
            <exon e_start="83589" e_stop="84231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.978" e_score="0.667"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="81162" e_stop="81170" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.978">
            <gDNA_intron_boundary i_start="81171" i_stop="81258" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81259" e_stop="81543" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="81544" i_stop="82050" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82051" e_stop="82190" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82191" i_stop="82855" i_length="665"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82856" e_stop="83333" e_length="478"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="83334" i_stop="83588" i_length="255"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="83589" e_stop="84231" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81162" stop="81170"/>
              <exon start="81259" stop="81543"/>
              <exon start="82051" stop="82190"/>
              <exon start="82856" stop="83277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82101" stop="82190"/>
              <exon start="82856" stop="83333"/>
              <exon start="83589" stop="83760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82126" stop="82190"/>
              <exon start="82856" stop="83333"/>
              <exon start="83589" stop="83904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82980" stop="83333"/>
              <exon start="83589" stop="83968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82992" stop="83333"/>
              <exon start="83589" stop="83869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="83333"/>
              <exon start="83589" stop="84222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83159" stop="83333"/>
              <exon start="83589" stop="84218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83234" stop="83333"/>
              <exon start="83589" stop="84032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83309" stop="83333"/>
              <exon start="83589" stop="84013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83320" stop="83333"/>
              <exon start="83589" stop="84012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83333" stop="83333"/>
              <exon start="83589" stop="84227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="84069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83639" stop="84113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="84231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTCTAAG : TAACTCTTCAGATTATCGCACCTCAAGGAGCAAGTGGTGACTATCCTGGTTGTACAGATTTAGCATATACAAAAGCTGCTTCCGATGGTGCAGATATTATTGGCTGTCCTGTCCAAATGACAAAAGATGGAATACCCTTCTGCCTTAGTTCGATAAATCTGATAGACACGACGACTGCGGCCCAATCGCCATTCAGCGACATCGCTACCACTGCTCCAGAGCTTCAGATAACAGATGGAATACTCACCATCAACCTAAACTGGAGCGATATTCAAACGCTGAAAC : CGGTAATATCAACCCGGTATTCAGACTTTAGATTGTCACGGAATCCAAAGGCCAGAAATGTTGGAAAGTTTATGTCGTTAGCAGACTTCTTGACATTTTCCAAAACTGCTAATGTTTCTGGTATAATGATCAGCATAGAG : AATGCTGCATACCTGGCAAAGCAGGGATTAGGTGTAACTGATGCGGTTTTGGATGCCCTAAGCACAGCTGGTTACAATAATCAGACAGCTAGGAAAGTTATGATCCAATCAAATGACAGTTCTGTTCTGGAAGAATTCAAGAAGAGTAGTTATGAACTTGTTTATTTGGTTGACGATAATATCAGTGATATTAAGAACTCAACTATATTGGAGATCAAGACCTTTGCAAAATCTGTTGTCATAACCAAGAAATCAGTCTTCCCCAGTGAAGACGCTTTTATCATTGGTCAAACGAATATTGTGCAGAAGCTGCAGTCAGCAAATCTCCCGGTATATGTACGACTATTTAATAACGAGTTTATATCTCAAGCATGGGACTTCTTCTCAGATTCGTCTACTGAGATAAACAACTATGTTCTTGGAGCTGGTGTTGATGGTCTTGTTACAGAATACCCTGGGACAGCGGCTAGATACCGAA : GGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTT</gDNA_template>
            <first_frame> H  S  K  :  *  L  F  R  L  S  H  L  K  E  Q  V  V  T  I  L  V  V  Q  I  *  H  I  Q  K  L  L  P  M  V  Q  I  L  L  A  V  L  S  K  *  Q  K  M  E  Y  P  S  A  L  V  R  *  I  *  *  T  R  R  L  R  P  N  R  H  S  A  T  S  L  P  L  L  Q  S  F  R  *  Q  M  E  Y  S  P  S  T  *  T  G  A  I  F  K  R  *  N  :  R  *  Y  Q  P  G  I  Q  T  L  D  C  H  G  I  Q  R  P  E  M  L  E  S  L  C  R  *  Q  T  S  *  H  F  P  K  L  L  M  F  L  V  *  *  S  A  *  R :   M  L  H  T  W  Q  S  R  D  *  V  *  L  M  R  F  W  M  P  *  A  Q  L  V  T  I  I  R  Q  L  G  K  L  *  S  N  Q  M  T  V  L  F  W  K  N  S  R  R  V  V  M  N  L  F  I  W  L  T  I  I  S  V  I  L  R  T  Q  L  Y  W  R  S  R  P  L  Q  N  L  L  S  *  P  R  N  Q  S  S  P  V  K  T  L  L  S  L  V  K  R  I  L  C  R  S  C  S  Q  Q  I  S  R  Y  M  Y  D  Y  L  I  T  S  L  Y  L  K  H  G  T  S  S  Q  I  R  L  L  R  *  T  T  M  F  L  E  L  V  L  M  V  L  L  Q  N  T  L  G  Q  R  L  D  T  E  :  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  </first_frame>
            <second_frame>  T  L  S :   N  S  S  D  Y  R  T  S  R  S  K  W  *  L  S  W  L  Y  R  F  S  I  Y  K  S  C  F  R  W  C  R  Y  Y  W  L  S  C  P  N  D  K  R  W  N  T  L  L  P  *  F  D  K  S  D  R  H  D  D  C  G  P  I  A  I  Q  R  H  R  Y  H  C  S  R  A  S  D  N  R  W  N  T  H  H  Q  P  K  L  E  R  Y  S  N  A  E  T :   G  N  I  N  P  V  F  R  L  *  I  V  T  E  S  K  G  Q  K  C  W  K  V  Y  V  V  S  R  L  L  D  I  F  Q  N  C  *  C  F  W  Y  N  D  Q  H  R   : E  C  C  I  P  G  K  A  G  I  R  C  N  *  C  G  F  G  C  P  K  H  S  W  L  Q  *  S  D  S  *  E  S  Y  D  P  I  K  *  Q  F  C  S  G  R  I  Q  E  E  *  L  *  T  C  L  F  G  *  R  *  Y  Q  *  Y  *  E  L  N  Y  I  G  D  Q  D  L  C  K  I  C  C  H  N  Q  E  I  S  L  P  Q  *  R  R  F  Y  H  W  S  N  E  Y  C  A  E  A  A  V  S  K  S  P  G  I  C  T  T  I  *  *  R  V  Y  I  S  S  M  G  L  L  L  R  F  V  Y  *  D  K  Q  L  C  S  W  S  W  C  *  W  S  C  Y  R  I  P  W  D  S  G  *  I  P  K :   E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F </second_frame>
            <third_frame>   L  *   : V  T  L  Q  I  I  A  P  Q  G  A  S  G  D  Y  P  G  C  T  D  L  A  Y  T  K  A  A  S  D  G  A  D  I  I  G  C  P  V  Q  M  T  K  D  G  I  P  F  C  L  S  S  I  N  L  I  D  T  T  T  A  A  Q  S  P  F  S  D  I  A  T  T  A  P  E  L  Q  I  T  D  G  I  L  T  I  N  L  N  W  S  D  I  Q  T  L  K   : P  V  I  S  T  R  Y  S  D  F  R  L  S  R  N  P  K  A  R  N  V  G  K  F  M  S  L  A  D  F  L  T  F  S  K  T  A  N  V  S  G  I  M  I  S  I  E  :  N  A  A  Y  L  A  K  Q  G  L  G  V  T  D  A  V  L  D  A  L  S  T  A  G  Y  N  N  Q  T  A  R  K  V  M  I  Q  S  N  D  S  S  V  L  E  E  F  K  K  S  S  Y  E  L  V  Y  L  V  D  D  N  I  S  D  I  K  N  S  T  I  L  E  I  K  T  F  A  K  S  V  V  I  T  K  K  S  V  F  P  S  E  D  A  F  I  I  G  Q  T  N  I  V  Q  K  L  Q  S  A  N  L  P  V  Y  V  R  L  F  N  N  E  F  I  S  Q  A  W  D  F  F  S  D  S  S  T  E  I  N  N  Y  V  L  G  A  G  V  D  G  L  V  T  E  Y  P  G  T  A  A  R  Y  R   : R  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81170" stop="81543"/>
                    <exon start="82051" stop="82190"/>
                    <exon start="82856" stop="83333"/>
                    <exon start="83589" stop="83887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTLQIIAPQGASGDYPGCTDLAYTKAASDGADIIGCPVQMTKDGIPFCLSSINLIDTTTAAQSPFSDIATTAPELQITDGILTINLNWSDIQTLKPVISTRYSDFRLSRNPKARNVGKFMSLADFLTFSKTANVSGIMISIENAAYLAKQGLGVTDAVLDALSTAGYNNQTARKVMIQSNDSSVLEEFKKSSYELVYLVDDNISDIKNSTILEIKTFAKSVVITKKSVFPSEDAFIIGQTNIVQKLQSANLPVYVRLFNNEFISQAWDFFSDSSTEINNYVLGAGVDGLVTEYPGTAARYRRNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84007" stop="84210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83575" e_stop="84231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="83575" e_stop="84231" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83575" stop="84230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="84069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83639" stop="84113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="84231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGAATGTACAGGGAACCGTTGTTTAGCATACAAAAACTTGCCACCATATATGAGCCCTGTTCAACCTGGGAGTCTCCTGGGACTCATGACTGTTCAGTCTATGCCACCAGTCGAACCTCCCAGCCCCGTGCTCGATGTAAGTGATGTGACTGAGCCACCACTTCCACCTGTTGCAAAGATAAACCCAAGTAACGACGATGGTTCTACAGCTAGAGCTCCCACTACTCCTCCAAATGGCCAATCCTCAGTTGTTGCTAGCATTCTCATGAGCTCAGTTGCAGTTCTTCTAGCAATTTTCATGGTATATTGATGACCATTTCTACTTTGGTGCCACCATTTTGTACAATTTGTTTTGCCATCTTACTGATCAAACCTCCCTCTGGTGATTATGGAGTCGCACATGATGGCGGCGGTAGTCAGCTCATTTAACACATGATTGTTTCCTTGTATTTGCGATGTATCAAAATTTTCAGCTCTTGTTTATTCTTTACATTCTTCCTCGTTTCTATTTTTCATTCCTTCCCTCCCCTTTTTTTTTCCATTTTGGGTCAGATTGAGTGGGTGTCTGGGGTTTATTGCCTATTTATTTGTAAGAATTCTGTTTTGGATATAAGCAATGATCAATTTAGTTAGTATTTTTCATACACAGCCTTT</gDNA_template>
            <first_frame> L  G  M  Y  R  E  P  L  F  S  I  Q  K  L  A  T  I  Y  E  P  C  S  T  W  E  S  P  G  T  H  D  C  S  V  Y  A  T  S  R  T  S  Q  P  R  A  R  C  K  *  C  D  *  A  T  T  S  T  C  C  K  D  K  P  K  *  R  R  W  F  Y  S  *  S  S  H  Y  S  S  K  W  P  I  L  S  C  C  *  H  S  H  E  L  S  C  S  S  S  S  N  F  H  G  I  L  M  T  I  S  T  L  V  P  P  F  C  T  I  C  F  A  I  L  L  I  K  P  P  S  G  D  Y  G  V  A  H  D  G  G  G  S  Q  L  I  *  H  M  I  V  S  L  Y  L  R  C  I  K  I  F  S  S  C  L  F  F  T  F  F  L  V  S  I  F  H  S  F  P  P  L  F  F  S  I  L  G  Q  I  E  W  V  S  G  V  Y  C  L  F  I  C  K  N  S  V  L  D  I  S  N  D  Q  F  S  *  Y  F  S  Y  T  A  F </first_frame>
            <second_frame>  W  E  C  T  G  N  R  C  L  A  Y  K  N  L  P  P  Y  M  S  P  V  Q  P  G  S  L  L  G  L  M  T  V  Q  S  M  P  P  V  E  P  P  S  P  V  L  D  V  S  D  V  T  E  P  P  L  P  P  V  A  K  I  N  P  S  N  D  D  G  S  T  A  R  A  P  T  T  P  P  N  G  Q  S  S  V  V  A  S  I  L  M  S  S  V  A  V  L  L  A  I  F  M  V  Y  *  *  P  F  L  L  W  C  H  H  F  V  Q  F  V  L  P  S  Y  *  S  N  L  P  L  V  I  M  E  S  H  M  M  A  A  V  V  S  S  F  N  T  *  L  F  P  C  I  C  D  V  S  K  F  S  A  L  V  Y  S  L  H  S  S  S  F  L  F  F  I  P  S  L  P  F  F  F  P  F  W  V  R  L  S  G  C  L  G  F  I  A  Y  L  F  V  R  I  L  F  W  I  *  A  M  I  N  L  V  S  I  F  H  T  Q  P   </second_frame>
            <third_frame>   G  N  V  Q  G  T  V  V  *  H  T  K  T  C  H  H  I  *  A  L  F  N  L  G  V  S  W  D  S  *  L  F  S  L  C  H  Q  S  N  L  P  A  P  C  S  M  *  V  M  *  L  S  H  H  F  H  L  L  Q  R  *  T  Q  V  T  T  M  V  L  Q  L  E  L  P  L  L  L  Q  M  A  N  P  Q  L  L  L  A  F  S  *  A  Q  L  Q  F  F  *  Q  F  S  W  Y  I  D  D  H  F  Y  F  G  A  T  I  L  Y  N  L  F  C  H  L  T  D  Q  T  S  L  W  *  L  W  S  R  T  *  W  R  R  *  S  A  H  L  T  H  D  C  F  L  V  F  A  M  Y  Q  N  F  Q  L  L  F  I  L  Y  I  L  P  R  F  Y  F  S  F  L  P  S  P  F  F  F  H  F  G  S  D  *  V  G  V  W  G  L  L  P  I  Y  L  *  E  F  C  F  G  Y  K  Q  *  S  I  *  L  V  F  F  I  H  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83576" stop="83887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WECTGNRCLAYKNLPPYMSPVQPGSLLGLMTVQSMPPVEPPSPVLDVSDVTEPPLPPVAKINPSNDDGSTARAPTTPPNGQSSVVASILMSSVAVLLAIFMVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84007" stop="84210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMIVSLYLRCIKIFSSCLFFTFFLVSIFHSFPPLFFSILGQIEWVSGVYCLFICKNSVLDISNDQFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="86738" PGL_stop="86205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86738" e_stop="86221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="86738" e_stop="86221" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86738" stop="86233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86533" stop="86221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86524" stop="86280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAATTTCCGGAAAGACCTCTCAGTTGAGGATTGGAGACTTGTCATGAAACTGAAGACCCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTGGTTATTTGTTGGCAAGTTTTTCATACAAATATCAAATTCAATTCTTTGTATAAAA</gDNA_template>
            <first_frame> I  Q  F  P  E  R  P  L  S  *  G  L  E  T  C  H  E  T  E  D  P  L  *  D  T  M  R  Q  V  F  V  A  C  K  G  V  D  S  W  F  S  N  K  L  H  L  R  G  L  A  V  H  *  A  I  S  G  D  L  S  V  N  E  G  G  L  D  I  M  F  M  P  P  Q  R  Q  K  *  A  K  V  K  N  A  I  V  A  A  C  C  N  *  F  L  L  V  G  T  P  S  I  L  C  M  L  F  L  V  L  K  *  D  L  C  H  I  D  Q  C  Q  S  C  T  G  A  Q  N  G  N  T  F  F  H  N  T  E  M  *  Y  *  L  F  D  I  Y  Q  K  P  C  K  R  L  L  V  G  Y  L  L  A  S  F  S  Y  K  Y  Q  I  Q  F  F  V  *   </first_frame>
            <second_frame>  S  N  F  R  K  D  L  S  V  E  D  W  R  L  V  M  K  L  K  T  L  F  K  I  Q  *  D  R  F  L  *  L  V  K  G  L  I  L  G  S  P  I  S  S  I  L  G  A  *  Q  F  I  E  Q  *  V  V  I  *  V  *  T  K  E  V  W  T  *  C  S  C  H  L  R  D  R  N  E  Q  K  *  R  M  Q  L  L  L  P  A  A  T  D  F  F  W  S  V  L  R  A  F  C  V  C  C  F  W  Y  *  S  E  I  Y  A  T  L  T  N  V  R  V  V  Q  G  H  K  T  A  T  H  F  F  I  I  Q  R  C  N  I  D  F  L  I  Y  T  K  N  R  A  K  D  Y  W  L  V  I  C  W  Q  V  F  H  T  N  I  K  F  N  S  L  Y  K  </second_frame>
            <third_frame>   P  I  S  G  K  T  S  Q  L  R  I  G  D  L  S  *  N  *  R  P  S  L  R  Y  N  E  T  G  F  C  S  L  *  R  G  *  F  L  V  L  Q  *  A  P  S  *  G  L  S  S  S  L  S  N  K  W  *  F  E  C  K  R  R  R  S  G  H  N  V  H  A  T  S  E  T  E  M  S  K  S  E  E  C  N  C  C  C  L  L  Q  L  I  S  F  G  R  Y  S  E  H  S  V  Y  A  V  F  G  T  E  V  R  F  M  P  H  *  P  M  S  E  L  Y  R  G  T  K  R  Q  H  I  F  S  *  Y  R  D  V  I  L  T  F  *  Y  I  P  K  T  V  Q  K  I  I  G  W  L  F  V  G  K  F  F  I  Q  I  S  N  S  I  L  C  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86678" e_stop="86276"/>
            <exon e_start="86224" e_stop="86205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="86678" e_stop="86276" e_length="403"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86275" i_stop="86225" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="86224" e_stop="86205" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86678" stop="86276"/>
              <exon start="86224" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86524" stop="86280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTTTAAGATACAATGAGACAGGTTTTTGTAGCTTGTAAAGGGGTTGATTCTTGGTTCTCCAATAAGCTCCATCTTAGGGGCTTAGCAGTTCATTGAGCAATAAGTGGTGATTTGAGTGTAAACGAAGGAGGTCTGGACATAATGTTCATGCCACCTCAGAGACAGAAATGAGCAAAAGTGAAGAATGCAATTGTTGCTGCCTGCTGCAACTGATTTCTTTTGGTCGGTACTCCGAGCATTCTGTGTATGCTGTTTTTGGTACTGAAGTGAGATTTATGCCACATTGACCAATGTCAGAGTTGTACAGGGGCACAAAACGGCAACACATTTTTTCATAATACAGAGATGTAATATTGACTTTTTGATATATACCAAAAACCGTGCAAAAGATTATTGGTTG : AAAAAAAAATAAAAAATTAC</gDNA_template>
            <first_frame> P  L  *  D  T  M  R  Q  V  F  V  A  C  K  G  V  D  S  W  F  S  N  K  L  H  L  R  G  L  A  V  H  *  A  I  S  G  D  L  S  V  N  E  G  G  L  D  I  M  F  M  P  P  Q  R  Q  K  *  A  K  V  K  N  A  I  V  A  A  C  C  N  *  F  L  L  V  G  T  P  S  I  L  C  M  L  F  L  V  L  K  *  D  L  C  H  I  D  Q  C  Q  S  C  T  G  A  Q  N  G  N  T  F  F  H  N  T  E  M  *  Y  *  L  F  D  I  Y  Q  K  P  C  K  R  L  L  V   : E  K  K  I  K  N  Y </first_frame>
            <second_frame>  L  F  K  I  Q  *  D  R  F  L  *  L  V  K  G  L  I  L  G  S  P  I  S  S  I  L  G  A  *  Q  F  I  E  Q  *  V  V  I  *  V  *  T  K  E  V  W  T  *  C  S  C  H  L  R  D  R  N  E  Q  K  *  R  M  Q  L  L  L  P  A  A  T  D  F  F  W  S  V  L  R  A  F  C  V  C  C  F  W  Y  *  S  E  I  Y  A  T  L  T  N  V  R  V  V  Q  G  H  K  T  A  T  H  F  F  I  I  Q  R  C  N  I  D  F  L  I  Y  T  K  N  R  A  K  D  Y  W  L  :  K  K  K  *  K  I   </second_frame>
            <third_frame>   S  L  R  Y  N  E  T  G  F  C  S  L  *  R  G  *  F  L  V  L  Q  *  A  P  S  *  G  L  S  S  S  L  S  N  K  W  *  F  E  C  K  R  R  R  S  G  H  N  V  H  A  T  S  E  T  E  M  S  K  S  E  E  C  N  C  C  C  L  L  Q  L  I  S  F  G  R  Y  S  E  H  S  V  Y  A  V  F  G  T  E  V  R  F  M  P  H  *  P  M  S  E  L  Y  R  G  T  K  R  Q  H  I  F  S  *  Y  R  D  V  I  L  T  F  *  Y  I  P  K  T  V  Q  K  I  I  G  * :   K  K  N  K  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="96447" PGL_stop="92146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96447" e_stop="95724"/>
            <exon e_start="94618" e_stop="94469"/>
            <exon e_start="93932" e_stop="92740"/>
            <exon e_start="92156" e_stop="92146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.990" e_score="0.999"/>
          <exon-intron don_prob="0.984" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.495" e_score="0.998"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="96447" e_stop="95724" e_length="724"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.990">
            <gDNA_intron_boundary i_start="95723" i_stop="94619" i_length="1105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94618" e_stop="94469" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.909">
            <gDNA_intron_boundary i_start="94468" i_stop="93933" i_length="536"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="93932" e_stop="92740" e_length="1193"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.495">
            <gDNA_intron_boundary i_start="92739" i_stop="92157" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="92156" e_stop="92146" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96447" stop="95724"/>
              <exon start="94618" stop="94469"/>
              <exon start="93932" stop="92740"/>
              <exon start="92156" stop="92146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93652" stop="92953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAGAGAGGGGAAGAAGAAGATGAACAAGAAGAAGCTGAAAATTCTTCTTTCTCTCTTTGCTCTCAACACAATTACTCTTTATCTCTACTTCTCTTCACACCCAGATCATTTCCGCCACAATTTCCCTAAAAACCACTATATTACTACCGGAAACCGCTTTTCTTCATCGGAAAACCATCCAAATTTGCACTCCTCCGTTGCTTCCCAATCCAAACCATGGCCTATTTTGCCGTCTTACCTCCCTTGGTCTCAGAACCCCAACGTTGGTTGGAGATCGTGTGAGGGTTATTTTGGAAATGGGTTTACTCGTAAAATCGATCTTCTCAAAGCCTCGCCGGAGATTCACCGGAAATTCGGTGAAAACAGATATTTCGGTGAAGGAGGAGTAGGAGGGTGGTTTAGGTGTTTTTTCAGTGAGACATTGCAGAGTTCGATTTGTGAAGGAGGGGTAATAAGAATGAATCCGGAGAAAATTTTGATGTCTAAAGGAGGAGAGAAATTGGAAGAAGTAATAGGAAGGGGAGAAGAAGAAGAGTTACCCATTTTTGAAAATGGAGCTTTTGAGATAGAGGTTAATGAAAGAACAAAAATTGGGAAAAAATTAGCTGATGAAAATTTCTTGAATAAATATTTACCTGAAGGTGCAGTCTCAAAGCACACTATGAGGGAATTAATCGACTCGATTCGATTAGTTGACGCCAATGATTTTCATTGTTCTGAG : TGGATTGAGGAGCCATCACTTTTGATTACCCGATTTGAGTATGCAAATCTTTTTCATACAATTACTGATTGGTATAGTGCATACGCGGCATCCAGAGTTACTGGCTTACCCAGTCGGCCACATTTGGTTTTTGTAGATGGCCATTGTGAG : ACACAATTGGAGGAAACATGGAGAGCACTGTTTTCAAGCCTCACTTATGCTAAAAACTTTAGCGGTCCGGTTTGTTTTCGCCATGCTATCCTCTCGCCGTTGGGATATGAAACTGCCCTGTTTAAGGGGCTTTCAGAAAGTATCGGTTGTACTGGAGCTCCTGCCCATGATTTGTGGCAAAATCCCAGTGATAGTAAAACTGCACGGTTGTCCGAGTTTGGAGAGATGATCAGAGCAGCCTTTGGATTTCCTGTGGATAGACAGAACATCCCAAGGACAGTCACTGGCCACAATGTCCTCTTTGTTAGACGCGAGGATTATTTAGCTCACCCACGTCATGGCGGAAAGGTACAGTCTAGGCTTAGCAATGAACAAGAAGTATTTGATTCCATAAAGAGCTGGTCCTTGAACCACACAGAGTGCAAAGTAAATGTGATTAACGGATTATTTGCCCACATGTCCATGAAAGATCAAGTTCGAGCAATCCAAGATGCTTCTGTCATTGTAGGTGCTCATGGAGCAGGTCTAACGCACATTGTTTCTGCATCACCAAAAGCTGTTATACTAGAAATCATAAGCAGTGAATATAGGCGCCCCCATTTTTCTCTGATTGCTTATTGGAAAGGATTGGAGTACCATCCCATTGATTTGGAGGGATCTTATGCGGATCCACCAGTCGTAATTGACAAGCTCAACAGTATTTTGAGGAGTCTTGGCTGCTAAATCTACTCAACAGTTTGAACAGTTCAACTTTTCTCTACAAGACTGGAATTTGGAGCCTGAAAATCTTGTAAAATATGTTTCATCTGCAGTTCTATAGTTTTGCTGCATTCTTGATCCTCAATCCGGTGTTCACAAGCTTCACAGGTTCTGGCAGTTACTAATTTATTAGCCCCTCTCAGTTATGAACTCTCAGAACGATCGTTATGGTGAGCTCATTCAAGATATTCTTTATGGTGCAATATTACAAGTCACTCGCGATACACACATTTGTAAATCACATTATAGGTGTGTACAACTTCATTACAATTCGTTGTCAATTGTTTTCTGCAATTTATTATCTTCTTGTTCTGGGAAGACACAGATTAACAAGCATGTTGAAGTAGCAGATTAACAAGAACCTCAGTGTACTGTTCAGTGATGTATGATTGTAACTTGTAACAAAACAAAAGAAATGAGACATTTAACAAGAA : AGGGAAAAAAA</gDNA_template>
            <first_frame> *  E  R  G  E  E  E  D  E  Q  E  E  A  E  N  S  S  F  S  L  C  S  Q  H  N  Y  S  L  S  L  L  L  F  T  P  R  S  F  P  P  Q  F  P  *  K  P  L  Y  Y  Y  R  K  P  L  F  F  I  G  K  P  S  K  F  A  L  L  R  C  F  P  I  Q  T  M  A  Y  F  A  V  L  P  P  L  V  S  E  P  Q  R  W  L  E  I  V  *  G  L  F  W  K  W  V  Y  S  *  N  R  S  S  Q  S  L  A  G  D  S  P  E  I  R  *  K  Q  I  F  R  *  R  R  S  R  R  V  V  *  V  F  F  Q  *  D  I  A  E  F  D  L  *  R  R  G  N  K  N  E  S  G  E  N  F  D  V  *  R  R  R  E  I  G  R  S  N  R  K  G  R  R  R  R  V  T  H  F  *  K  W  S  F  *  D  R  G  *  *  K  N  K  N  W  E  K  I  S  *  *  K  F  L  E  *  I  F  T  *  R  C  S  L  K  A  H  Y  E  G  I  N  R  L  D  S  I  S  *  R  Q  *  F  S  L  F  *   : V  D  *  G  A  I  T  F  D  Y  P  I  *  V  C  K  S  F  S  Y  N  Y  *  L  V  *  C  I  R  G  I  Q  S  Y  W  L  T  Q  S  A  T  F  G  F  C  R  W  P  L  *   : D  T  I  G  G  N  M  E  S  T  V  F  K  P  H  L  C  *  K  L  *  R  S  G  L  F  S  P  C  Y  P  L  A  V  G  I  *  N  C  P  V  *  G  A  F  R  K  Y  R  L  Y  W  S  S  C  P  *  F  V  A  K  S  Q  *  *  *  N  C  T  V  V  R  V  W  R  D  D  Q  S  S  L  W  I  S  C  G  *  T  E  H  P  K  D  S  H  W  P  Q  C  P  L  C  *  T  R  G  L  F  S  S  P  T  S  W  R  K  G  T  V  *  A  *  Q  *  T  R  S  I  *  F  H  K  E  L  V  L  E  P  H  R  V  Q  S  K  C  D  *  R  I  I  C  P  H  V  H  E  R  S  S  S  S  N  P  R  C  F  C  H  C  R  C  S  W  S  R  S  N  A  H  C  F  C  I  T  K  S  C  Y  T  R  N  H  K  Q  *  I  *  A  P  P  F  F  S  D  C  L  L  E  R  I  G  V  P  S  H  *  F  G  G  I  L  C  G  S  T  S  R  N  *  Q  A  Q  Q  Y  F  E  E  S  W  L  L  N  L  L  N  S  L  N  S  S  T  F  L  Y  K  T  G  I  W  S  L  K  I  L  *  N  M  F  H  L  Q  F  Y  S  F  A  A  F  L  I  L  N  P  V  F  T  S  F  T  G  S  G  S  Y  *  F  I  S  P  S  Q  L  *  T  L  R  T  I  V  M  V  S  S  F  K  I  F  F  M  V  Q  Y  Y  K  S  L  A  I  H  T  F  V  N  H  I  I  G  V  Y  N  F  I  T  I  R  C  Q  L  F  S  A  I  Y  Y  L  L  V  L  G  R  H  R  L  T  S  M  L  K  *  Q  I  N  K  N  L  S  V  L  F  S  D  V  *  L  *  L  V  T  K  Q  K  K  *  D  I  *  Q  E  :  R  E  K   </first_frame>
            <second_frame>  E  R  E  G  K  K  K  M  N  K  K  K  L  K  I  L  L  S  L  F  A  L  N  T  I  T  L  Y  L  Y  F  S  S  H  P  D  H  F  R  H  N  F  P  K  N  H  Y  I  T  T  G  N  R  F  S  S  S  E  N  H  P  N  L  H  S  S  V  A  S  Q  S  K  P  W  P  I  L  P  S  Y  L  P  W  S  Q  N  P  N  V  G  W  R  S  C  E  G  Y  F  G  N  G  F  T  R  K  I  D  L  L  K  A  S  P  E  I  H  R  K  F  G  E  N  R  Y  F  G  E  G  G  V  G  G  W  F  R  C  F  F  S  E  T  L  Q  S  S  I  C  E  G  G  V  I  R  M  N  P  E  K  I  L  M  S  K  G  G  E  K  L  E  E  V  I  G  R  G  E  E  E  E  L  P  I  F  E  N  G  A  F  E  I  E  V  N  E  R  T  K  I  G  K  K  L  A  D  E  N  F  L  N  K  Y  L  P  E  G  A  V  S  K  H  T  M  R  E  L  I  D  S  I  R  L  V  D  A  N  D  F  H  C  S  E  :  W  I  E  E  P  S  L  L  I  T  R  F  E  Y  A  N  L  F  H  T  I  T  D  W  Y  S  A  Y  A  A  S  R  V  T  G  L  P  S  R  P  H  L  V  F  V  D  G  H  C  E  :  T  Q  L  E  E  T  W  R  A  L  F  S  S  L  T  Y  A  K  N  F  S  G  P  V  C  F  R  H  A  I  L  S  P  L  G  Y  E  T  A  L  F  K  G  L  S  E  S  I  G  C  T  G  A  P  A  H  D  L  W  Q  N  P  S  D  S  K  T  A  R  L  S  E  F  G  E  M  I  R  A  A  F  G  F  P  V  D  R  Q  N  I  P  R  T  V  T  G  H  N  V  L  F  V  R  R  E  D  Y  L  A  H  P  R  H  G  G  K  V  Q  S  R  L  S  N  E  Q  E  V  F  D  S  I  K  S  W  S  L  N  H  T  E  C  K  V  N  V  I  N  G  L  F  A  H  M  S  M  K  D  Q  V  R  A  I  Q  D  A  S  V  I  V  G  A  H  G  A  G  L  T  H  I  V  S  A  S  P  K  A  V  I  L  E  I  I  S  S  E  Y  R  R  P  H  F  S  L  I  A  Y  W  K  G  L  E  Y  H  P  I  D  L  E  G  S  Y  A  D  P  P  V  V  I  D  K  L  N  S  I  L  R  S  L  G  C  *  I  Y  S  T  V  *  T  V  Q  L  F  S  T  R  L  E  F  G  A  *  K  S  C  K  I  C  F  I  C  S  S  I  V  L  L  H  S  *  S  S  I  R  C  S  Q  A  S  Q  V  L  A  V  T  N  L  L  A  P  L  S  Y  E  L  S  E  R  S  L  W  *  A  H  S  R  Y  S  L  W  C  N  I  T  S  H  S  R  Y  T  H  L  *  I  T  L  *  V  C  T  T  S  L  Q  F  V  V  N  C  F  L  Q  F  I  I  F  L  F  W  E  D  T  D  *  Q  A  C  *  S  S  R  L  T  R  T  S  V  Y  C  S  V  M  Y  D  C  N  L  *  Q  N  K  R  N  E  T  F  N  K  K :   G  K  K  </second_frame>
            <third_frame>   R  E  R  G  R  R  R  *  T  R  R  S  *  K  F  F  F  L  S  L  L  S  T  Q  L  L  F  I  S  T  S  L  H  T  Q  I  I  S  A  T  I  S  L  K  T  T  I  L  L  P  E  T  A  F  L  H  R  K  T  I  Q  I  C  T  P  P  L  L  P  N  P  N  H  G  L  F  C  R  L  T  S  L  G  L  R  T  P  T  L  V  G  D  R  V  R  V  I  L  E  M  G  L  L  V  K  S  I  F  S  K  P  R  R  R  F  T  G  N  S  V  K  T  D  I  S  V  K  E  E  *  E  G  G  L  G  V  F  S  V  R  H  C  R  V  R  F  V  K  E  G  *  *  E  *  I  R  R  K  F  *  C  L  K  E  E  R  N  W  K  K  *  *  E  G  E  K  K  K  S  Y  P  F  L  K  M  E  L  L  R  *  R  L  M  K  E  Q  K  L  G  K  N  *  L  M  K  I  S  *  I  N  I  Y  L  K  V  Q  S  Q  S  T  L  *  G  N  *  S  T  R  F  D  *  L  T  P  M  I  F  I  V  L  S :   G  L  R  S  H  H  F  *  L  P  D  L  S  M  Q  I  F  F  I  Q  L  L  I  G  I  V  H  T  R  H  P  E  L  L  A  Y  P  V  G  H  I  W  F  L  *  M  A  I  V  R :   H  N  W  R  K  H  G  E  H  C  F  Q  A  S  L  M  L  K  T  L  A  V  R  F  V  F  A  M  L  S  S  R  R  W  D  M  K  L  P  C  L  R  G  F  Q  K  V  S  V  V  L  E  L  L  P  M  I  C  G  K  I  P  V  I  V  K  L  H  G  C  P  S  L  E  R  *  S  E  Q  P  L  D  F  L  W  I  D  R  T  S  Q  G  Q  S  L  A  T  M  S  S  L  L  D  A  R  I  I  *  L  T  H  V  M  A  E  R  Y  S  L  G  L  A  M  N  K  K  Y  L  I  P  *  R  A  G  P  *  T  T  Q  S  A  K  *  M  *  L  T  D  Y  L  P  T  C  P  *  K  I  K  F  E  Q  S  K  M  L  L  S  L  *  V  L  M  E  Q  V  *  R  T  L  F  L  H  H  Q  K  L  L  Y  *  K  S  *  A  V  N  I  G  A  P  I  F  L  *  L  L  I  G  K  D  W  S  T  I  P  L  I  W  R  D  L  M  R  I  H  Q  S  *  L  T  S  S  T  V  F  *  G  V  L  A  A  K  S  T  Q  Q  F  E  Q  F  N  F  S  L  Q  D  W  N  L  E  P  E  N  L  V  K  Y  V  S  S  A  V  L  *  F  C  C  I  L  D  P  Q  S  G  V  H  K  L  H  R  F  W  Q  L  L  I  Y  *  P  L  S  V  M  N  S  Q  N  D  R  Y  G  E  L  I  Q  D  I  L  Y  G  A  I  L  Q  V  T  R  D  T  H  I  C  K  S  H  Y  R  C  V  Q  L  H  Y  N  S  L  S  I  V  F  C  N  L  L  S  S  C  S  G  K  T  Q  I  N  K  H  V  E  V  A  D  *  Q  E  P  Q  C  T  V  Q  *  C  M  I  V  T  C  N  K  T  K  E  M  R  H  L  T  R   : K  G  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96446" stop="95724"/>
                    <exon start="94618" stop="94469"/>
                    <exon start="93932" stop="93210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREGKKKMNKKKLKILLSLFALNTITLYLYFSSHPDHFRHNFPKNHYITTGNRFSSSENHPNLHSSVASQSKPWPILPSYLPWSQNPNVGWRSCEGYFGNGFTRKIDLLKASPEIHRKFGENRYFGEGGVGGWFRCFFSETLQSSICEGGVIRMNPEKILMSKGGEKLEEVIGRGEEEELPIFENGAFEIEVNERTKIGKKLADENFLNKYLPEGAVSKHTMRELIDSIRLVDANDFHCSEWIEEPSLLITRFEYANLFHTITDWYSAYAASRVTGLPSRPHLVFVDGHCETQLEETWRALFSSLTYAKNFSGPVCFRHAILSPLGYETALFKGLSESIGCTGAPAHDLWQNPSDSKTARLSEFGEMIRAAFGFPVDRQNIPRTVTGHNVLFVRREDYLAHPRHGGKVQSRLSNEQEVFDSIKSWSLNHTECKVNVINGLFAHMSMKDQVRAIQDASVIVGAHGAGLTHIVSASPKAVILEIISSEYRRPHFSLIAYWKGLEYHPIDLEGSYADPPVVIDKLNSILRSLGC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93040" stop="92819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSVMNSQNDRYGELIQDILYGAILQVTRDTHICKSHYRCVQLHYNSLSIVFCNLLSSCSGKTQINKHVEVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="100619" PGL_stop="100172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100619" e_stop="100172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="100619" e_stop="100172" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100619" stop="100298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100619" stop="100329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100618" stop="100172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAAGTGTATAATTCGCAATTGTATAGTTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGATAGTGGCGAGCGAGATTCCTGGAAGAGAGACGCTGACAAATTTTAGATAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCTATTTAATTTAAGTTATTAA</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  F  I  A  K  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  K  C  I  I  R  N  C  I  V  R  W  P  F  S  L  Q  F  L  K  *  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  I  V  A  S  E  I  P  G  R  E  T  L  T  N  F  R  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  K  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  L  *  Q  K  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  S  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  F  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  *  W  R  A  R  F  L  E  E  R  R  *  Q  I  L  D  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  N  L  S  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  V  Y  N  S  Q  L  Y  S  S  L  A  F  F  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  D  S  G  E  R  D  S  W  K  R  D  A  D  K  F  *  I  M  F  A  M  E  H  N  *  I  K  P  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="109552" PGL_stop="104000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109552" e_stop="109478"/>
            <exon e_start="109361" e_stop="109289"/>
            <exon e_start="108363" e_stop="108027"/>
            <exon e_start="107795" e_stop="107629"/>
            <exon e_start="107534" e_stop="107274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.836" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109552" e_stop="109478" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109361" e_stop="109289" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108363" e_stop="108027" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107795" e_stop="107629" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.836">
            <gDNA_intron_boundary i_start="107628" i_stop="107535" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="107534" e_stop="107274" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109552" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109537" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109528" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109527" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109527" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109526" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109525" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109525" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109525" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109524" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109519" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109518" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109518" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109500" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109344" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108344" stop="108037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108327" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108283" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108239" stop="108027"/>
              <exon start="107795" stop="107629"/>
              <exon start="107534" stop="107364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107757" stop="107629"/>
              <exon start="107534" stop="107462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAACTCTTGCAGAGCCGTCGTCCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG : GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA : GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG : GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACCATGTCCAAAGAAAGCTGGAAAAGAGGCAACAGGATCGCAAGATTGACCCACATGTCGAGGAGCAATTTGCTAGTGGGCGTCTATTGGCTGCAATCTCATCGCGACCTGGCCAGTGTGGTCGTGCTGATGG : TTACATATTGGAAGGAAAGGAACTTGAATTTTACATGAAGAAACTTCAGAAGAAGAAAGGGAAGGGTGCCGGTGCTGCTGCTTAGAGTTGCAGGCTCCAATTTTTAAATTATCAGAACAAATTAGATTTTGGTTTTTCTTCCCTATTCAACAGTCTCACTTCATTTAAAGGGAATGATAAACTTCTTGTATCAGAGTTAGATTCAAGTTTGTTTTGCATATGCTTAACTGAGAATTTTGAGAACCACCTACTTTATGAAAA</gDNA_template>
            <first_frame> P  N  S  C  R  A  V  V  R  L  *  E  N  R  N  P  K  D  L  R  H  R  R  Q  W  :  V  S  L  V  I  L  C  T  R  D  V  P  L  E  E  S  R  R  L  G  G  R  R  E   : S  M  S  L  A  D  S  P  Q  T  Q  S  W  C  Q  M  L  R  L  L  E  G  *  E  S  E  E  V  M  *  S  G  V  L  *  G  W  I  L  G  I  S  L  G  V  A  R  L  L  Q  G  R  L  V  C  W  M  W  C  I  T  P  L  T  M  S  W  L  G  H  K  P  W  *  R  V  Q  L  F  R  L  T  Q  L  H  L  S  S  G  I  S  S  T  M  E  L  K  S  V  A  R  R  R  L  L  L  L  P  K  R  K  E  R :   R  L  R  L  *  Q  R  R  K  R  V  T  M  S  K  E  S  W  K  R  G  N  R  I  A  R  L  T  H  M  S  R  S  N  L  L  V  G  V  Y  W  L  Q  S  H  R  D  L  A  S  V  V  V  L  M   : V  T  Y  W  K  E  R  N  L  N  F  T  *  R  N  F  R  R  R  K  G  R  V  P  V  L  L  L  R  V  A  G  S  N  F  *  I  I  R  T  N  *  I  L  V  F  L  P  Y  S  T  V  S  L  H  L  K  G  M  I  N  F  L  Y  Q  S  *  I  Q  V  C  F  A  Y  A  *  L  R  I  L  R  T  T  Y  F  M  K  </first_frame>
            <second_frame>  P  T  L  A  E  P  S  S  V  F  E  K  I  E  T  L  R  T  S  V  T  G  D  N  G :   Y  L  S  *  F  Y  A  Q  E  T  C  H  W  R  K  A  E  D  L  E  E  E  E  K  :  V  *  A  W  Q  T  A  R  K  H  K  A  G  A  K  C  *  D  C  *  K  D  K  S  P  R  R  *  C  E  V  A  C  F  E  V  G  Y  W  E  F  L  L  G  *  R  G  C  Y  K  E  D  S  S  V  G  C  G  V  *  R  L  *  Q  *  V  G  *  D  T  N  P  G  E  E  C  N  Y  S  G  *  R  S  S  I  *  A  V  V  S  P  A  L  W  S  *  N  R  S  Q  E  E  D  C  C  F  F  Q  K  G  R  R   : G  G  *  G  C  S  R  G  E  K  E  *  P  C  P  K  K  A  G  K  E  A  T  G  S  Q  D  *  P  T  C  R  G  A  I  C  *  W  A  S  I  G  C  N  L  I  A  T  W  P  V  W  S  C  *  W  :  L  H  I  G  R  K  G  T  *  I  L  H  E  E  T  S  E  E  E  R  E  G  C  R  C  C  C  L  E  L  Q  A  P  I  F  K  L  S  E  Q  I  R  F  W  F  F  F  P  I  Q  Q  S  H  F  I  *  R  E  *  *  T  S  C  I  R  V  R  F  K  F  V  L  H  M  L  N  *  E  F  *  E  P  P  T  L  *  K </second_frame>
            <third_frame>   Q  L  L  Q  S  R  R  P  S  L  R  K  S  K  P  *  G  P  P  S  P  A  T  M   : G  I  S  R  D  S  M  H  K  R  R  A  T  G  G  K  Q  K  T  W  R  K  K  R  K :   Y  E  L  G  R  Q  P  A  N  T  K  L  V  P  N  A  K  T  V  R  R  I  R  V  R  G  G  N  V  K  W  R  A  L  R  L  D  T  G  N  F  S  W  G  S  E  A  V  T  R  K  T  R  L  L  D  V  V  Y  N  A  S  N  N  E  L  V  R  T  Q  T  L  V  K  S  A  I  I  Q  V  D  A  A  P  F  K  Q  W  Y  L  Q  H  Y  G  V  E  I  G  R  K  K  K  T  A  A  S  S  K  K  E  G  E  :  E  A  E  A  V  A  E  E  K  K  S  N  H  V  Q  R  K  L  E  K  R  Q  Q  D  R  K  I  D  P  H  V  E  E  Q  F  A  S  G  R  L  L  A  A  I  S  S  R  P  G  Q  C  G  R  A  D  G :   Y  I  L  E  G  K  E  L  E  F  Y  M  K  K  L  Q  K  K  K  G  K  G  A  G  A  A  A  *  S  C  R  L  Q  F  L  N  Y  Q  N  K  L  D  F  G  F  S  S  L  F  N  S  L  T  S  F  K  G  N  D  K  L  L  V  S  E  L  D  S  S  L  F  C  I  C  L  T  E  N  F  E  N  H  L  L  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109502" stop="109478"/>
                    <exon start="109361" stop="109289"/>
                    <exon start="108363" stop="108027"/>
                    <exon start="107795" stop="107629"/>
                    <exon start="107534" stop="107450"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPPSPATMGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLVPNAKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVEIGRKKKTAASSKKEGEEAEAVAEEKKSNHVQRKLEKRQQDRKIDPHVEEQFASGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAGAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109529" e_stop="109478"/>
            <exon e_start="109361" e_stop="109289"/>
            <exon e_start="108363" e_stop="108027"/>
            <exon e_start="107795" e_stop="107759"/>
            <exon e_start="106466" e_stop="106419"/>
            <exon e_start="105411" e_stop="105370"/>
            <exon e_start="104598" e_stop="104528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.676" e_score="0.784"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.583"/>
          <exon-intron don_prob="0.000" acc_prob="0.416" e_score="0.619"/>
          <exon-only e_score="0.648"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109529" e_stop="109478" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109477" i_stop="109362" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109361" e_stop="109289" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="109288" i_stop="108364" i_length="925"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108363" e_stop="108027" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108026" i_stop="107796" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="0.784">
            <gDNA_exon_boundary e_start="107795" e_stop="107759" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.676">
            <gDNA_intron_boundary i_start="107758" i_stop="106467" i_length="1292"/>
          </intron>
          <exon e_serial="5" e_score="0.583">
            <gDNA_exon_boundary e_start="106466" e_stop="106419" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106418" i_stop="105412" i_length="1007"/>
          </intron>
          <exon e_serial="6" e_score="0.619">
            <gDNA_exon_boundary e_start="105411" e_stop="105370" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.416">
            <gDNA_intron_boundary i_start="105369" i_stop="104599" i_length="771"/>
          </intron>
          <exon e_serial="7" e_score="0.648">
            <gDNA_exon_boundary e_start="104598" e_stop="104528" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109529" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108027"/>
              <exon start="107795" stop="107759"/>
              <exon start="106466" stop="106419"/>
              <exon start="105411" stop="105370"/>
              <exon start="104598" stop="104528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109527" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109526" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109519" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109518" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109518" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109500" stop="109478"/>
              <exon start="109361" stop="109289"/>
              <exon start="108363" stop="108059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108344" stop="108037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTCTTTGAGAAAATCGAAACCCTAAGGACCTCCGTCACCGGCGACAATGG : GTATCTCTCGTGATTCTATGCACAAGAGACGTGCCACTGGAGGAAAGCAGAAGACTTGGAGGAAGAAGAGAAA : GTATGAGCTTGGCAGACAGCCCGCAAACACAAAGCTGGTGCCAAATGCTAAGACTGTTAGAAGGATAAGAGTCCGAGGAGGTAATGTGAAGTGGCGTGCTTTGAGGTTGGATACTGGGAATTTCTCTTGGGGTAGCGAGGCTGTTACAAGGAAGACTCGTCTGTTGGATGTGGTGTATAACGCCTCTAACAATGAGTTGGTTAGGACACAAACCCTGGTGAAGAGTGCAATTATTCAGGTTGACGCAGCTCCATTTAAGCAGTGGTATCTCCAGCACTATGGAGTTGAAATCGGTCGCAAGAAGAAGACTGCTGCTTCTTCCAAAAAGGAAGGAGAG : GAGGCTGAGGCTGTAGCAGAGGAGAAAAAGAGTAACC : GGATACGACATCAAAACGATGGTATTGCATCATCATTTGCTATAATAA : AACACAAACCACACAAATATAATACTACAAACAAAACTCATA : GTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTA</gDNA_template>
            <first_frame> P  S  L  R  K  S  K  P  *  G  P  P  S  P  A  T  M   : G  I  S  R  D  S  M  H  K  R  R  A  T  G  G  K  Q  K  T  W  R  K  K  R  K :   Y  E  L  G  R  Q  P  A  N  T  K  L  V  P  N  A  K  T  V  R  R  I  R  V  R  G  G  N  V  K  W  R  A  L  R  L  D  T  G  N  F  S  W  G  S  E  A  V  T  R  K  T  R  L  L  D  V  V  Y  N  A  S  N  N  E  L  V  R  T  Q  T  L  V  K  S  A  I  I  Q  V  D  A  A  P  F  K  Q  W  Y  L  Q  H  Y  G  V  E  I  G  R  K  K  K  T  A  A  S  S  K  K  E  G  E  :  E  A  E  A  V  A  E  E  K  K  S  N   : R  I  R  H  Q  N  D  G  I  A  S  S  F  A  I  I   : K  H  K  P  H  K  Y  N  T  T  N  K  T  H   : S  N  L  F  S  I  L  H  F  L  *  K  *  N  Q  K  K  K  K  Q  I  K  I  L </first_frame>
            <second_frame>  R  L  *  E  N  R  N  P  K  D  L  R  H  R  R  Q  W  :  V  S  L  V  I  L  C  T  R  D  V  P  L  E  E  S  R  R  L  G  G  R  R  E   : S  M  S  L  A  D  S  P  Q  T  Q  S  W  C  Q  M  L  R  L  L  E  G  *  E  S  E  E  V  M  *  S  G  V  L  *  G  W  I  L  G  I  S  L  G  V  A  R  L  L  Q  G  R  L  V  C  W  M  W  C  I  T  P  L  T  M  S  W  L  G  H  K  P  W  *  R  V  Q  L  F  R  L  T  Q  L  H  L  S  S  G  I  S  S  T  M  E  L  K  S  V  A  R  R  R  L  L  L  L  P  K  R  K  E  R :   R  L  R  L  *  Q  R  R  K  R  V  T  :  G  Y  D  I  K  T  M  V  L  H  H  H  L  L  *  *  :  N  T  N  H  T  N  I  I  L  Q  T  K  L  I  :  V  I  Y  F  Q  F  Y  T  F  Y  K  N  K  I  R  K  K  R  S  K  L  R  Y   </second_frame>
            <third_frame>   V  F  E  K  I  E  T  L  R  T  S  V  T  G  D  N  G :   Y  L  S  *  F  Y  A  Q  E  T  C  H  W  R  K  A  E  D  L  E  E  E  E  K  :  V  *  A  W  Q  T  A  R  K  H  K  A  G  A  K  C  *  D  C  *  K  D  K  S  P  R  R  *  C  E  V  A  C  F  E  V  G  Y  W  E  F  L  L  G  *  R  G  C  Y  K  E  D  S  S  V  G  C  G  V  *  R  L  *  Q  *  V  G  *  D  T  N  P  G  E  E  C  N  Y  S  G  *  R  S  S  I  *  A  V  V  S  P  A  L  W  S  *  N  R  S  Q  E  E  D  C  C  F  F  Q  K  G  R  R   : G  G  *  G  C  S  R  G  E  K  E  *  P :   D  T  T  S  K  R  W  Y  C  I  I  I  C  Y  N  K :   T  Q  T  T  Q  I  *  Y  Y  K  Q  N  S  * :   *  F  I  F  N  F  T  L  F  I  K  I  K  S  E  K  K  E  A  N  *  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109502" stop="109478"/>
                    <exon start="109361" stop="109289"/>
                    <exon start="108363" stop="108027"/>
                    <exon start="107795" stop="107759"/>
                    <exon start="106466" stop="106419"/>
                    <exon start="105411" stop="105370"/>
                    <exon start="104598" stop="104567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPPSPATMGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLVPNAKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVEIGRKKKTAASSKKEGEEAEAVAEEKKSNRIRHQNDGIASSFAIIKHKPHKYNTTNKTHSNLFSILHFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104625" e_stop="104000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104625" e_stop="104000" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104625" stop="104000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104624" stop="104394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAAACTGTCACCTACATGTTGCAGGTAATTTATTTTCAATTTTACACTTTTTATAAAAATAAAATCAGAAAAAAAAGAAGCAAATTAAGATATTAGACCTAATCCATCGAAGCCTCTATTGGATAGACTGAACGAACTGTCCAATGGTAATGAATAAGGAACCATTTGCGGAGATTGATTCAAGGGATTAACTTTATTTGACCTTATTAAAGCTGAAAAGAAATTTCATTTAAACCCTTTAATTAAACGGTATTTATTTTAGATACTTTATATCGGCTTGTGTCTCTTTTCATATGATGTTGGTGCAAATTAGTTTCCACGTTTCATAAAATTAAAGGAGTAGTTGAATAAATGTGATTGTTCAACTTAAAAGGATCAAAATAAATATGTTTAACTTATAAATGACTTAGATTAATTTATGTTTGAACAGTCAGCACATAAATGTCCATTTTGTTTTTGTATCCTAAATTTCATGATGTTGAAAATTATTTAGGTAAACAACATTTATATGTTAAAATTTCATATTAATTGAAATTAAAGCAAGTTTTTTTTTATTTTTATATTTAATATTATTATTTGTACAAAAGGGAGGCTCAGAGGCGAAACCATCTTATACTAGGAGT</gDNA_template>
            <first_frame> F  E  T  V  T  Y  M  L  Q  V  I  Y  F  Q  F  Y  T  F  Y  K  N  K  I  R  K  K  R  S  K  L  R  Y  *  T  *  S  I  E  A  S  I  G  *  T  E  R  T  V  Q  W  *  *  I  R  N  H  L  R  R  L  I  Q  G  I  N  F  I  *  P  Y  *  S  *  K  E  I  S  F  K  P  F  N  *  T  V  F  I  L  D  T  L  Y  R  L  V  S  L  F  I  *  C  W  C  K  L  V  S  T  F  H  K  I  K  G  V  V  E  *  M  *  L  F  N  L  K  G  S  K  *  I  C  L  T  Y  K  *  L  R  L  I  Y  V  *  T  V  S  T  *  M  S  I  L  F  L  Y  P  K  F  H  D  V  E  N  Y  L  G  K  Q  H  L  Y  V  K  I  S  Y  *  L  K  L  K  Q  V  F  F  Y  F  Y  I  *  Y  Y  Y  L  Y  K  R  E  A  Q  R  R  N  H  L  I  L  G   </first_frame>
            <second_frame>  L  K  L  S  P  T  C  C  R  *  F  I  F  N  F  T  L  F  I  K  I  K  S  E  K  K  E  A  N  *  D  I  R  P  N  P  S  K  P  L  L  D  R  L  N  E  L  S  N  G  N  E  *  G  T  I  C  G  D  *  F  K  G  L  T  L  F  D  L  I  K  A  E  K  K  F  H  L  N  P  L  I  K  R  Y  L  F  *  I  L  Y  I  G  L  C  L  F  S  Y  D  V  G  A  N  *  F  P  R  F  I  K  L  K  E  *  L  N  K  C  D  C  S  T  *  K  D  Q  N  K  Y  V  *  L  I  N  D  L  D  *  F  M  F  E  Q  S  A  H  K  C  P  F  C  F  C  I  L  N  F  M  M  L  K  I  I  *  V  N  N  I  Y  M  L  K  F  H  I  N  *  N  *  S  K  F  F  F  I  F  I  F  N  I  I  I  C  T  K  G  R  L  R  G  E  T  I  L  Y  *  E  </second_frame>
            <third_frame>   *  N  C  H  L  H  V  A  G  N  L  F  S  I  L  H  F  L  *  K  *  N  Q  K  K  K  K  Q  I  K  I  L  D  L  I  H  R  S  L  Y  W  I  D  *  T  N  C  P  M  V  M  N  K  E  P  F  A  E  I  D  S  R  D  *  L  Y  L  T  L  L  K  L  K  R  N  F  I  *  T  L  *  L  N  G  I  Y  F  R  Y  F  I  S  A  C  V  S  F  H  M  M  L  V  Q  I  S  F  H  V  S  *  N  *  R  S  S  *  I  N  V  I  V  Q  L  K  R  I  K  I  N  M  F  N  L  *  M  T  *  I  N  L  C  L  N  S  Q  H  I  N  V  H  F  V  F  V  S  *  I  S  *  C  *  K  L  F  R  *  T  T  F  I  C  *  N  F  I  L  I  E  I  K  A  S  F  F  L  F  L  Y  L  I  L  L  F  V  Q  K  G  G  S  E  A  K  P  S  Y  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="107238" PGL_stop="107524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107238" e_stop="107524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="107238" e_stop="107524" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107238" stop="107524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGCAACTTTTAAGGCTGTTCTCAAAATTCTTTTTTTTCATAAAGTAGGTGGTTCTCAAAATTCTCAGTTAAGCATATGCAAAACAAACTTGAATCTAACTCTGATACAAGAAGTTTATCATTCCCTTTAAATGAAGTGAGACTGTTGAATAGGGAAGAAAAACCAAAATCTAATTTGTTCTGATAATTTAAAAATTGGAGCCTGCAACTCTAAGCAGCAGCACCGGCACCCTTCCCTTTCTTCTTCTGAAGTTTCTTCATGTAAAATTCAAGTTCCTTTCCTTC</gDNA_template>
            <first_frame> *  C  N  F  *  G  C  S  Q  N  S  F  F  S  *  S  R  W  F  S  K  F  S  V  K  H  M  Q  N  K  L  E  S  N  S  D  T  R  S  L  S  F  P  L  N  E  V  R  L  L  N  R  E  E  K  P  K  S  N  L  F  *  *  F  K  N  W  S  L  Q  L  *  A  A  A  P  A  P  F  P  F  F  F  *  S  F  F  M  *  N  S  S  S  F  P   </first_frame>
            <second_frame>  D  A  T  F  K  A  V  L  K  I  L  F  F  H  K  V  G  G  S  Q  N  S  Q  L  S  I  C  K  T  N  L  N  L  T  L  I  Q  E  V  Y  H  S  L  *  M  K  *  D  C  *  I  G  K  K  N  Q  N  L  I  C  S  D  N  L  K  I  G  A  C  N  S  K  Q  Q  H  R  H  P  S  L  S  S  S  E  V  S  S  C  K  I  Q  V  P  F  L  </second_frame>
            <third_frame>   M  Q  L  L  R  L  F  S  K  F  F  F  F  I  K  *  V  V  L  K  I  L  S  *  A  Y  A  K  Q  T  *  I  *  L  *  Y  K  K  F  I  I  P  F  K  *  S  E  T  V  E  *  G  R  K  T  K  I  *  F  V  L  I  I  *  K  L  E  P  A  T  L  S  S  S  T  G  T  L  P  F  L  L  L  K  F  L  H  V  K  F  K  F  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="110146" PGL_stop="113934"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110146" e_stop="110404"/>
            <exon e_start="112694" e_stop="112822"/>
            <exon e_start="113182" e_stop="113366"/>
            <exon e_start="113592" e_stop="113934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.667" acc_prob="0.485" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110146" e_stop="110404" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.810">
            <gDNA_intron_boundary i_start="110405" i_stop="112693" i_length="2289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112694" e_stop="112822" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.925">
            <gDNA_intron_boundary i_start="112823" i_stop="113181" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113182" e_stop="113366" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.667" acc_prob="0.485">
            <gDNA_intron_boundary i_start="113367" i_stop="113591" i_length="225"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113592" e_stop="113934" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110146" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110170" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110197" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110213" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110213" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113366"/>
              <exon start="113592" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110213" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110213" stop="110404"/>
              <exon start="112694" stop="112822"/>
              <exon start="113182" stop="113240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTGTTTCCAAGTTGAGAGCTTTGTTCCCTCTATTGAAAAAAATGGGGTTTGCTGCAGATAGTACCATTTCAATGGCTAATATCTTTCTAAGAAGCTCTCATCATCATAAGAAAGATGTAAATTTGGGGTCTTGTATGAGAAAGGAAACATGGGGTTTTAATCTTTACTTGCCAAAGCTCAAGTACCAATCAAGAATCTCATTTTGTTGCAAGAATGAATCAATTGATTTTGAAGAAAGAACAAGTCCTAATGAG : GTCAAGAAAGAGATAGAGCAATGCTATGAATTAATACACAGGCTTGGTCGTGGTGTTGTGTATTTAGGATCTTCAAGGATTGGTCCTGGACATCCACACTACATAAAAACCTTTGAATTAGGGAACAAG : ATTGCAACTCTATTAGATTGTACGACATGGTCCGGGGCTGGGCCAGGCTTAATGGATGCTGCCACACAAGGTGCTCTACAAGCAGGGAAGCCCGTTGGCGGGTTCAAGATAGGTAAAGAAGCAGGGGAATGGACAGCTACAAATTTTCATCCATACTTACCATCAGAGAGTTATCTTACATGCAG : GTTTTTCTCCGCAAGGAAACACGGGCTGGTGGATGCTGTTGTGAGATGTAGAAGCTCTGAAAGGACAGCTGTTATCGCGCTTCCTGGAGGAATTGGTACCCTCGACGAGGTTTTTGAGATCATGGCTTTGATTCAACTCGAACGAATTGGCTCTCAACTTCCTGTTCCTTTGCTTCTAATGAACTATGATTCATTTTATACCAATTTGTTGGAGTTCCTCAATGATTGTGAGAAGTGGGGAACTGTCTCTAAGGGTGAAGTTGAATCATTGTGGAAAATTTGTACCAATAACTCAGAAGCTTTGGATTATTTGGCTGAATTTTATGGTCTTTCTACTATACAA</gDNA_template>
            <first_frame> I  Y  C  F  Q  V  E  S  F  V  P  S  I  E  K  N  G  V  C  C  R  *  Y  H  F  N  G  *  Y  L  S  K  K  L  S  S  S  *  E  R  C  K  F  G  V  L  Y  E  K  G  N  M  G  F  *  S  L  L  A  K  A  Q  V  P  I  K  N  L  I  L  L  Q  E  *  I  N  *  F  *  R  K  N  K  S  *  *   : G  Q  E  R  D  R  A  M  L  *  I  N  T  Q  A  W  S  W  C  C  V  F  R  I  F  K  D  W  S  W  T  S  T  L  H  K  N  L  *  I  R  E  Q   : D  C  N  S  I  R  L  Y  D  M  V  R  G  W  A  R  L  N  G  C  C  H  T  R  C  S  T  S  R  E  A  R  W  R  V  Q  D  R  *  R  S  R  G  M  D  S  Y  K  F  S  S  I  L  T  I  R  E  L  S  Y  M  Q  :  V  F  L  R  K  E  T  R  A  G  G  C  C  C  E  M  *  K  L  *  K  D  S  C  Y  R  A  S  W  R  N  W  Y  P  R  R  G  F  *  D  H  G  F  D  S  T  R  T  N  W  L  S  T  S  C  S  F  A  S  N  E  L  *  F  I  L  Y  Q  F  V  G  V  P  Q  *  L  *  E  V  G  N  C  L  *  G  *  S  *  I  I  V  E  N  L  Y  Q  *  L  R  S  F  G  L  F  G  *  I  L  W  S  F  Y  Y  T  </first_frame>
            <second_frame>  Y  I  V  S  K  L  R  A  L  F  P  L  L  K  K  M  G  F  A  A  D  S  T  I  S  M  A  N  I  F  L  R  S  S  H  H  H  K  K  D  V  N  L  G  S  C  M  R  K  E  T  W  G  F  N  L  Y  L  P  K  L  K  Y  Q  S  R  I  S  F  C  C  K  N  E  S  I  D  F  E  E  R  T  S  P  N  E  :  V  K  K  E  I  E  Q  C  Y  E  L  I  H  R  L  G  R  G  V  V  Y  L  G  S  S  R  I  G  P  G  H  P  H  Y  I  K  T  F  E  L  G  N  K  :  I  A  T  L  L  D  C  T  T  W  S  G  A  G  P  G  L  M  D  A  A  T  Q  G  A  L  Q  A  G  K  P  V  G  G  F  K  I  G  K  E  A  G  E  W  T  A  T  N  F  H  P  Y  L  P  S  E  S  Y  L  T  C  R :   F  F  S  A  R  K  H  G  L  V  D  A  V  V  R  C  R  S  S  E  R  T  A  V  I  A  L  P  G  G  I  G  T  L  D  E  V  F  E  I  M  A  L  I  Q  L  E  R  I  G  S  Q  L  P  V  P  L  L  L  M  N  Y  D  S  F  Y  T  N  L  L  E  F  L  N  D  C  E  K  W  G  T  V  S  K  G  E  V  E  S  L  W  K  I  C  T  N  N  S  E  A  L  D  Y  L  A  E  F  Y  G  L  S  T  I  Q </second_frame>
            <third_frame>   I  L  F  P  S  *  E  L  C  S  L  Y  *  K  K  W  G  L  L  Q  I  V  P  F  Q  W  L  I  S  F  *  E  A  L  I  I  I  R  K  M  *  I  W  G  L  V  *  E  R  K  H  G  V  L  I  F  T  C  Q  S  S  S  T  N  Q  E  S  H  F  V  A  R  M  N  Q  L  I  L  K  K  E  Q  V  L  M  R :   S  R  K  R  *  S  N  A  M  N  *  Y  T  G  L  V  V  V  L  C  I  *  D  L  Q  G  L  V  L  D  I  H  T  T  *  K  P  L  N  *  G  T  R :   L  Q  L  Y  *  I  V  R  H  G  P  G  L  G  Q  A  *  W  M  L  P  H  K  V  L  Y  K  Q  G  S  P  L  A  G  S  R  *  V  K  K  Q  G  N  G  Q  L  Q  I  F  I  H  T  Y  H  Q  R  V  I  L  H  A   : G  F  S  P  Q  G  N  T  G  W  W  M  L  L  *  D  V  E  A  L  K  G  Q  L  L  S  R  F  L  E  E  L  V  P  S  T  R  F  L  R  S  W  L  *  F  N  S  N  E  L  A  L  N  F  L  F  L  C  F  *  *  T  M  I  H  F  I  P  I  C  W  S  S  S  M  I  V  R  S  G  E  L  S  L  R  V  K  L  N  H  C  G  K  F  V  P  I  T  Q  K  L  W  I  I  W  L  N  F  M  V  F  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110147" stop="110404"/>
                    <exon start="112694" stop="112822"/>
                    <exon start="113182" stop="113366"/>
                    <exon start="113592" stop="113934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIVSKLRALFPLLKKMGFAADSTISMANIFLRSSHHHKKDVNLGSCMRKETWGFNLYLPKLKYQSRISFCCKNESIDFEERTSPNEVKKEIEQCYELIHRLGRGVVYLGSSRIGPGHPHYIKTFELGNKIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIGKEAGEWTATNFHPYLPSESYLTCRFFSARKHGLVDAVVRCRSSERTAVIALPGGIGTLDEVFEIMALIQLERIGSQLPVPLLLMNYDSFYTNLLEFLNDCEKWGTVSKGEVESLWKICTNNSEALDYLAEFYGLSTIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="119692" PGL_stop="120274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119692" e_stop="119707"/>
            <exon e_start="119925" e_stop="120274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.688"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.688">
            <gDNA_exon_boundary e_start="119692" e_stop="119707" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119708" i_stop="119924" i_length="217"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="119925" e_stop="120274" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119692" stop="119707"/>
              <exon start="119925" stop="120274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688064" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATGTTAATATTTT : TAAGAAACAATTCACCATGAAAATGGATATGAACCTTCAAGGAGAAAATTATAGTCCCTTGCAAAATTGTTTTGTATTAATAAAAGAGACACAGCAAGAATTATCACTCTTAAAGCAGGATAAAGGTAAGTCGATTACAATTTACAAAACTTGATAATAGTGCCAAATGGTTGAAAACGACATTTTTTTGCATTTCTTCACTATCTAACGGGAGCCATGTCGACGATTTTTAAGGGACTGGCAGAAGAATGAAAAGGATTCCTTGAGCTCATTTGGTAGAGGTAGAGATAAAGGAGCAAGCACACCAAATTGCTGTCTACTGTTGACATTCATGTGAGATGTAAGAGCTA</gDNA_template>
            <first_frame> F  M  L  I  F   : L  R  N  N  S  P  *  K  W  I  *  T  F  K  E  K  I  I  V  P  C  K  I  V  L  Y  *  *  K  R  H  S  K  N  Y  H  S  *  S  R  I  K  V  S  R  L  Q  F  T  K  L  D  N  S  A  K  W  L  K  T  T  F  F  C  I  S  S  L  S  N  G  S  H  V  D  D  F  *  G  T  G  R  R  M  K  R  I  P  *  A  H  L  V  E  V  E  I  K  E  Q  A  H  Q  I  A  V  Y  C  *  H  S  C  E  M  *  E  L </first_frame>
            <second_frame>  L  C  *  Y  F  :  *  E  T  I  H  H  E  N  G  Y  E  P  S  R  R  K  L  *  S  L  A  K  L  F  C  I  N  K  R  D  T  A  R  I  I  T  L  K  A  G  *  R  *  V  D  Y  N  L  Q  N  L  I  I  V  P  N  G  *  K  R  H  F  F  A  F  L  H  Y  L  T  G  A  M  S  T  I  F  K  G  L  A  E  E  *  K  G  F  L  E  L  I  W  *  R  *  R  *  R  S  K  H  T  K  L  L  S  T  V  D  I  H  V  R  C  K  S   </second_frame>
            <third_frame>   Y  V  N  I  F :   K  K  Q  F  T  M  K  M  D  M  N  L  Q  G  E  N  Y  S  P  L  Q  N  C  F  V  L  I  K  E  T  Q  Q  E  L  S  L  L  K  Q  D  K  G  K  S  I  T  I  Y  K  T  *  *  *  C  Q  M  V  E  N  D  I  F  L  H  F  F  T  I  *  R  E  P  C  R  R  F  L  R  D  W  Q  K  N  E  K  D  S  L  S  S  F  G  R  G  R  D  K  G  A  S  T  P  N  C  C  L  L  L  T  F  M  *  D  V  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0184E04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="123144" PGL_stop="119975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123144" e_stop="122882"/>
            <exon e_start="121854" e_stop="121790"/>
            <exon e_start="121663" e_stop="121591"/>
            <exon e_start="121517" e_stop="121464"/>
            <exon e_start="120361" e_stop="119975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.358" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123144" e_stop="122882" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="122881" i_stop="121855" i_length="1027"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121854" e_stop="121790" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121789" i_stop="121664" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121663" e_stop="121591" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.358" acc_prob="0.967">
            <gDNA_intron_boundary i_start="121590" i_stop="121518" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121517" e_stop="121464" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="121463" i_stop="120362" i_length="1102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120361" e_stop="119975" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123144" stop="122882"/>
              <exon start="121854" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="120084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123133" stop="122882"/>
              <exon start="121854" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="120028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123133" stop="122882"/>
              <exon start="121854" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="120242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123132" stop="122882"/>
              <exon start="121854" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="120304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123129" stop="122882"/>
              <exon start="121854" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="120238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121852" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="119975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121851" stop="121790"/>
              <exon start="121663" stop="121591"/>
              <exon start="121517" stop="121464"/>
              <exon start="120361" stop="119979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCTTAGAACTTTTAGATTGACAAAACTTAGGGTTTAGCATTTGGAAATTGAGAATGGCGACGCCGACGACCTCACCGAACTCTGAATCCGATTCCGACGTTGAAACAAGTCCGGTGGCGAACCCGTCACCCGGACAGAATCCTCAATTCACCTCTGATGCGTTAACCACTGCGATTCCGTCTACTCCAGTCGTATGCCTCCTTAGGTTCGCCGGTGACTCTGCTGCTGGAGCCTTCATGGGATCCATTTTCGGATACG : GCTCAGGATTAATAAAGAAGAAAGGTTTTAAAGGATCCTTTGGGGAAGCAGGAGCTTCGGCAAAG : ACTTTTGCAGTTTTATCAGGAGTTCATAGTTTAGTTGTCTGTTTCTTGAAGAGAATACGGGGAAAAGATGATG : TTATCAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCCCTAAGTTTTCCAG : GTGCACCTCAGGCTCTACTACAGAGTTGTCTCACCTTTGGGGCATTTTCTTTCATCATCGAAGGTCTTAACAAGCAGCAACCTGCATTAGCTCTTACATCTCACATGAATGTCAACAGTAGACAGCAATTTGGTGTGCTTGCTCCTTTATCTCTACCTCTACCAAATGAGCTCAAGGAATCCTTTTCATTCTTCTGCCAGTCCCTTAAAAATCGTCGACATGGCTCCCGTTAGATAGTGAAGAAATGCAAAAAAATGTCGTTTTCAACCATTTGGCACTATTATCAAGTTTTGTAAATTGTAATCGACTTACCTTTATCCTGCTTTAAGAGTGATAATTCTTGCTGTGTCTCTTTTATTAATACAAAACAATTTTGCAAGGGACTAT</gDNA_template>
            <first_frame> K  Y  L  R  T  F  R  L  T  K  L  R  V  *  H  L  E  I  E  N  G  D  A  D  D  L  T  E  L  *  I  R  F  R  R  *  N  K  S  G  G  E  P  V  T  R  T  E  S  S  I  H  L  *  C  V  N  H  C  D  S  V  Y  S  S  R  M  P  P  *  V  R  R  *  L  C  C  W  S  L  H  G  I  H  F  R  I  R :   L  R  I  N  K  E  E  R  F  *  R  I  L  W  G  S  R  S  F  G  K   : D  F  C  S  F  I  R  S  S  *  F  S  C  L  F  L  E  E  N  T  G  K  R  *  C :   Y  Q  C  W  S  S  W  M  L  H  W  S  C  P  K  F  S  R :   C  T  S  G  S  T  T  E  L  S  H  L  W  G  I  F  F  H  H  R  R  S  *  Q  A  A  T  C  I  S  S  Y  I  S  H  E  C  Q  Q  *  T  A  I  W  C  A  C  S  F  I  S  T  S  T  K  *  A  Q  G  I  L  F  I  L  L  P  V  P  *  K  S  S  T  W  L  P  L  D  S  E  E  M  Q  K  N  V  V  F  N  H  L  A  L  L  S  S  F  V  N  C  N  R  L  T  F  I  L  L  *  E  *  *  F  L  L  C  L  F  Y  *  Y  K  T  I  L  Q  G  T   </first_frame>
            <second_frame>  N  I  L  E  L  L  D  *  Q  N  L  G  F  S  I  W  K  L  R  M  A  T  P  T  T  S  P  N  S  E  S  D  S  D  V  E  T  S  P  V  A  N  P  S  P  G  Q  N  P  Q  F  T  S  D  A  L  T  T  A  I  P  S  T  P  V  V  C  L  L  R  F  A  G  D  S  A  A  G  A  F  M  G  S  I  F  G  Y   : G  S  G  L  I  K  K  K  G  F  K  G  S  F  G  E  A  G  A  S  A  K  :  T  F  A  V  L  S  G  V  H  S  L  V  V  C  F  L  K  R  I  R  G  K  D  D   : V  I  N  A  G  V  A  G  C  C  T  G  L  A  L  S  F  P   : G  A  P  Q  A  L  L  Q  S  C  L  T  F  G  A  F  S  F  I  I  E  G  L  N  K  Q  Q  P  A  L  A  L  T  S  H  M  N  V  N  S  R  Q  Q  F  G  V  L  A  P  L  S  L  P  L  P  N  E  L  K  E  S  F  S  F  F  C  Q  S  L  K  N  R  R  H  G  S  R  *  I  V  K  K  C  K  K  M  S  F  S  T  I  W  H  Y  Y  Q  V  L  *  I  V  I  D  L  P  L  S  C  F  K  S  D  N  S  C  C  V  S  F  I  N  T  K  Q  F  C  K  G  L  </second_frame>
            <third_frame>   I  S  *  N  F  *  I  D  K  T  *  G  L  A  F  G  N  *  E  W  R  R  R  R  P  H  R  T  L  N  P  I  P  T  L  K  Q  V  R  W  R  T  R  H  P  D  R  I  L  N  S  P  L  M  R  *  P  L  R  F  R  L  L  Q  S  Y  A  S  L  G  S  P  V  T  L  L  L  E  P  S  W  D  P  F  S  D  T  :  A  Q  D  *  *  R  R  K  V  L  K  D  P  L  G  K  Q  E  L  R  Q  R :   L  L  Q  F  Y  Q  E  F  I  V  *  L  S  V  S  *  R  E  Y  G  E  K  M  M  :  L  S  M  L  E  *  L  D  V  A  L  V  L  P  *  V  F  Q  :  V  H  L  R  L  Y  Y  R  V  V  S  P  L  G  H  F  L  S  S  S  K  V  L  T  S  S  N  L  H  *  L  L  H  L  T  *  M  S  T  V  D  S  N  L  V  C  L  L  L  Y  L  Y  L  Y  Q  M  S  S  R  N  P  F  H  S  S  A  S  P  L  K  I  V  D  M  A  P  V  R  *  *  R  N  A  K  K  C  R  F  Q  P  F  G  T  I  I  K  F  C  K  L  *  S  T  Y  L  Y  P  A  L  R  V  I  I  L  A  V  S  L  L  L  I  Q  N  N  F  A  R  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123119" stop="122882"/>
                    <exon start="121854" stop="121790"/>
                    <exon start="121663" stop="121591"/>
                    <exon start="121517" stop="121464"/>
                    <exon start="120361" stop="120129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNLGFSIWKLRMATPTTSPNSESDSDVETSPVANPSPGQNPQFTSDALTTAIPSTPVVCLLRFAGDSAAGAFMGSIFGYGSGLIKKKGFKGSFGEAGASAKTFAVLSGVHSLVVCFLKRIRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFIIEGLNKQQPALALTSHMNVNSRQQFGVLAPLSLPLPNELKESFSFFCQSLKNRRHGSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="129915" PGL_stop="123545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129915" e_stop="129610"/>
            <exon e_start="129370" e_stop="129236"/>
            <exon e_start="128760" e_stop="128677"/>
            <exon e_start="128593" e_stop="128468"/>
            <exon e_start="128384" e_stop="128325"/>
            <exon e_start="128241" e_stop="128188"/>
            <exon e_start="128091" e_stop="127999"/>
            <exon e_start="127867" e_stop="127772"/>
            <exon e_start="127590" e_stop="127442"/>
            <exon e_start="127101" e_stop="126952"/>
            <exon e_start="126730" e_stop="126601"/>
            <exon e_start="126509" e_stop="125595"/>
            <exon e_start="125501" e_stop="125403"/>
            <exon e_start="125314" e_stop="125180"/>
            <exon e_start="125090" e_stop="124302"/>
            <exon e_start="124216" e_stop="123706"/>
            <exon e_start="123555" e_stop="123545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.682" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="129915" e_stop="129610" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="129609" i_stop="129371" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="129370" e_stop="129236" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="129235" i_stop="128761" i_length="475"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128760" e_stop="128677" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="128676" i_stop="128594" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128593" e_stop="128468" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.869" acc_prob="0.682">
            <gDNA_intron_boundary i_start="128467" i_stop="128385" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128384" e_stop="128325" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="128324" i_stop="128242" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="128241" e_stop="128188" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="128187" i_stop="128092" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="128091" e_stop="127999" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127998" i_stop="127868" i_length="131"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="127867" e_stop="127772" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.792">
            <gDNA_intron_boundary i_start="127771" i_stop="127591" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="127590" e_stop="127442" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127441" i_stop="127102" i_length="340"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="127101" e_stop="126952" e_length="150"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="126951" i_stop="126731" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="126730" e_stop="126601" e_length="130"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126600" i_stop="126510" i_length="91"/>
          </intron>
          <exon e_serial="12" e_score="0.992">
            <gDNA_exon_boundary e_start="126509" e_stop="125595" e_length="915"/>
          </exon>
          <intron i_serial="12" don_prob="0.911" acc_prob="0.999">
            <gDNA_intron_boundary i_start="125594" i_stop="125502" i_length="93"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="125501" e_stop="125403" e_length="99"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="125402" i_stop="125315" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="125314" e_stop="125180" e_length="135"/>
          </exon>
          <intron i_serial="14" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="125179" i_stop="125091" i_length="89"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="125090" e_stop="124302" e_length="789"/>
          </exon>
          <intron i_serial="15" don_prob="0.895" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124301" i_stop="124217" i_length="85"/>
          </intron>
          <exon e_serial="16" e_score="0.986">
            <gDNA_exon_boundary e_start="124216" e_stop="123706" e_length="511"/>
          </exon>
          <intron i_serial="16" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123705" i_stop="123556" i_length="150"/>
          </intron>
          <exon e_serial="17" e_score="0.818">
            <gDNA_exon_boundary e_start="123555" e_stop="123545" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129915" stop="129610"/>
              <exon start="129370" stop="129236"/>
              <exon start="128760" stop="128677"/>
              <exon start="128593" stop="128468"/>
              <exon start="128384" stop="128325"/>
              <exon start="128241" stop="128188"/>
              <exon start="128091" stop="127999"/>
              <exon start="127867" stop="127772"/>
              <exon start="127590" stop="127442"/>
              <exon start="127101" stop="126952"/>
              <exon start="126730" stop="126601"/>
              <exon start="126509" stop="125595"/>
              <exon start="125501" stop="125403"/>
              <exon start="125314" stop="125180"/>
              <exon start="125090" stop="124302"/>
              <exon start="124216" stop="123706"/>
              <exon start="123555" stop="123545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGTTCAGAAATGTCAGAAAACAGATTCTTAGGCAACATTTCTGCGTCTTCGTTCCGAAATCTACTTCCAAAATCAGTTTCAACTAAGAAAAAGTTGAGTTCAAGTAGATTTAAGCATAAAATGAACAGTGAAAATGTTGCTCCTATAGATCCCAACGTTCAGATCAGTGATCCACCGTTGTTACCTACGAGTTCGATACTTAAAAAAACCGTCTTGAAGACGATTGATAGTGATGTATCGACAGAACTCACCAGATCTGTTGCACAGGAACAAACATCAGAAGCTCCTGATCCACCAGTTAAG : GTTGTTGCAAGGATTAAACCTGCTAATGGTATTGAGAGTGGAACCCAAGCGGTTCGCAAAGCTTCTGATACCTCAGTGTGTGTTGCTGATAGAAAGTTTAACTTTGACATGGTTTTTGGTTCAAATTCGAATCAG : GAAGATGTATTTCAATCGGTTGGTGCCCCTTTAGTTAAGGATGCATTGGCAGGTTACAACACTTCTCTCTTAGCTTATGGACAG : ACTGGAAGTGGCAAGACTTATACAATGTGGGGACCTCCTAGTTCCATTGTTGAAGTTCCATCACCTAATGGTCTTCAAGGCATTGTGCCGCGCATTTTTCAGACATTGTTTTCTAGTATACAAAAA : GAGCAAGAGAACTCTGAAGGTAAACAGATAAATTACCAGTGTCGTTGCTCGTTCCTAGAG : ATATATGATGAACACATTGGGGATCTACTTGATCCTACACAGAGAAACTTAAAG : ATAATGGATGATCCAAGAGTTGGATTCTATGTTGAGAACATAACTGAGGAATATGTGTCTACCTACGAGGATGTATCACAAATGTTGATTAAG : GGTCTTTCAAGTAGAAAAGTTGGATCAACGAGCATCAATTCGAAGAGTTCTAGGTCCCATATTGTTTTTACCTGCGTCATTGAGTCCTGGTGCAAG : GAGTCCTCATCAACGTGTTTTGGTAGCTCAAAGATGAGCAGAATGAGCCTTGTTGATCTTGCTGGATTTGACAAAAATATACCTGATGATGCCGGTAAACAGCTTGTTAAGGAAGGGAAGTATGTAAAGAAGTCCACATCACTGCTCGG : GCATTTGGTTAATGTCCTCTCTGAAAGGAGTCAGTCCAGGAAACTTGAGGATGTTTCGTACAGCAGTTCCACTTTGACTCATTTAATGAGAGAATCACTTGGTGGGAATGCTAAACTCTCCGTCATATGTGCTATCAGCCCAGAAAACAA : GCATAATAGTGAAACAGTAAGCACTCTGAGATTTGGGAAACGGGTTAAACTCACACCAAATGAGCCATTGGTAAATGAAATAACAGAAGACGATGTTAATGGCCTGAGTGATCAGATTCGCCAATTGAAG : GAAGAGCTTATAAGAGCTCGGTCAAGTGCAAGCATTTCAGTCGGAAGCAACTATGGATCCTTCAGAGGACCAAATGTACGTGAAAGTTTGAATCAGTTGAGAGTGAGCCTTAACCGTTCACTCATCTTACCTGACATAGATAATGAGCGTGAAGAAGAAGAGGTTCACATAAATGAGGATGATATAAAAGAACTACAGCTCCAGATCAATAACTTACGTGGTTCACGTGGAAATAACTCAAACTCTCTCAAGTATTCATCTGGAGAAAGTGAACACTATCTCAGCTGTTCAGAAGAAAGTGAAGGTGAAGAAATTAACTCAGATGAGATACTGGAGGAGACCCTTGATGATGCTGACCAAGAGATGGAAACGATGCAGCCTGAATACTGTAGCAGCATCTCAATAGGCCCATCCCGCCATTCTGCTGATCTTCCTGGCCCGGTGTTATCTGAGTCCCCAAAGTTTCGGAACATGCAGAGGAAGAGCTTAATTATCTCCGGTGAAGATAATATTCAAAGTTCCTCCAAAAGTTCTGAATTGCCTTCCCTGCCACAGAAACAAGACCTTGTCCAGTCTTCTTTGAGGTCCAGCAGAATATTTCCTGGGCCAACTGAATCCTTGGCTGCCAGTCTACATAGAGGACTAGAGATCATTGATTATCACCAAAGGAATTCCGCATCAAATAAATCTTTGGTTTCCTTCTCTTTTGAACATTTGGCAGTGAACCCAAGCCCAATGTCAAATGGTAAGGCCAATGCTTCTATTCAAACATCATCGGAAGAGGGACAATCTTCTCCTTTTGTAGCCGCTACATTCCTGTGTCCAAAGTGCAAGACGAAAGCAACATCCTCTAGTGTTGTTAAGGATAGCACTGGGACATGGATGGTTTCCATGGAAGGGACAAGTACGGATCAA : GATTCGGAGAAAGTTTTGTTCCAAGCTCTAGAGAGAGAGAAGCAGCTTGAAAGTGTATGCAAGGATCAAGCAGACAAAATTGAGCAGCTAAACCAACGA : CTAGCCCGCTGTAAGTGCACACAAGAACAGAGTTCTTTAGTTGATTGTGGCAAGGATGTCGTTGATCTCCACGACAATGAGAATCAAGCTTCAATAATCTATCAGAATGGGAGTCAATCACCCAACATCCCAAAG : CTCCTGAAATGGGACGATGAAAGTCCTGAGCCTGAAGCTGCAGGAGAGAAGTATGAAACTAAAGAAATTCAGGGCAATGTCGAAAACAGTGGCGGGAAAAAAATGTTTGATATGGCTGAGAGAGAAGCACTACTTAAAGAAATTGGAGGCCTAAGGGCCCAATTGAAGTCAGATGGAGCCTCCACAAACAAATCACTTGAAAGAACCAGATCCTCTTTGTTAGCACAATCAATGCAGCTGAGAAAAAGTGGTGTATATGCTACTACGGGTTCTGGTGAAGAACTTGAGAAGGAAAGAGAAAGATGGACTGAGATGGAAAGTGAGTGGATTTGTCTAACTGATGAGCTTAGAATTGATCTTGAGGCTTATCGCCAGCGTGCAGAAAAGGTGGCAATGGAATTAATGTTGGAGAAGAAATGCACGGATGAGTTGGATGATGCCCTCAAAAGATCCGTCTTTGGGCAAGCCAGAATAATTGAGCATTACGCGGAATTACAGGAGAAGTACAACGACTTAGCTGAGAAGCATAAGTTGATCTTGCAAGGGATACAAGATGTGAAAAATGCTGCAGCAAAAGCAGGAAAGAAAGGCCATGGTGCTCGTTTCGCCAAGTCTCTCGCTGCAGAGCTGTCAGCTTTGAGAGTGGAAAGGGAAAGAGAGAGGGAAATGCTGAAAAAGGAGAATAAAAGCTTGAGAGTTCAACTTAAAGACACTGCTGAAGCTGTTCATGCAGCCGGAGAACTTCTTGTTAGATTGAGAGAAGCGGAGGAAACAGCTTCACTTGCTGAG : GAGAACTTTACACAATCAAAGGAAGAGAATGAGAGATTGAAGAAGCAAATAGAGAAGCTGAAGAGAAAACATAAGATGGAGATGATAACAATGAAACAGTATCTTGCTGAAAGCCGATTGCCAGAAGCAGCGTTGAGACCGCCTATTTACAGGCAAGACTCTGATGTAGCAAACAATGACAACAACAACACCATCCAACATTCTGAGTATGATGATGATCAATCATGGAGAGCAGAATTTGGCGCTATTTATCAAGAACACATATGAGCCATGTTTGATTGAACTATGGAAACACGTGAAGACCCTGCTCGGGACTTTGCTGAAAAAAACCTGCTCATCTTGATCACACCTTAGTGTTATTCAGGGATGAATTGGCTGTATTCTTATTGATTTTATCATTCTTTTGAAACTTGATTGACCAGATTTGACATTTGTTGTGAGCTGTTTCTTCAGCTTGTTAATAATAATGCTTATGTATCCTAAAAAGTCATTCAACTTTATGCACAAGTAT : ACAAAATAAAA</gDNA_template>
            <first_frame> L  S  S  E  M  S  E  N  R  F  L  G  N  I  S  A  S  S  F  R  N  L  L  P  K  S  V  S  T  K  K  K  L  S  S  S  R  F  K  H  K  M  N  S  E  N  V  A  P  I  D  P  N  V  Q  I  S  D  P  P  L  L  P  T  S  S  I  L  K  K  T  V  L  K  T  I  D  S  D  V  S  T  E  L  T  R  S  V  A  Q  E  Q  T  S  E  A  P  D  P  P  V  K  :  V  V  A  R  I  K  P  A  N  G  I  E  S  G  T  Q  A  V  R  K  A  S  D  T  S  V  C  V  A  D  R  K  F  N  F  D  M  V  F  G  S  N  S  N  Q  :  E  D  V  F  Q  S  V  G  A  P  L  V  K  D  A  L  A  G  Y  N  T  S  L  L  A  Y  G  Q  :  T  G  S  G  K  T  Y  T  M  W  G  P  P  S  S  I  V  E  V  P  S  P  N  G  L  Q  G  I  V  P  R  I  F  Q  T  L  F  S  S  I  Q  K  :  E  Q  E  N  S  E  G  K  Q  I  N  Y  Q  C  R  C  S  F  L  E  :  I  Y  D  E  H  I  G  D  L  L  D  P  T  Q  R  N  L  K  :  I  M  D  D  P  R  V  G  F  Y  V  E  N  I  T  E  E  Y  V  S  T  Y  E  D  V  S  Q  M  L  I  K  :  G  L  S  S  R  K  V  G  S  T  S  I  N  S  K  S  S  R  S  H  I  V  F  T  C  V  I  E  S  W  C  K  :  E  S  S  S  T  C  F  G  S  S  K  M  S  R  M  S  L  V  D  L  A  G  F  D  K  N  I  P  D  D  A  G  K  Q  L  V  K  E  G  K  Y  V  K  K  S  T  S  L  L  G :   H  L  V  N  V  L  S  E  R  S  Q  S  R  K  L  E  D  V  S  Y  S  S  S  T  L  T  H  L  M  R  E  S  L  G  G  N  A  K  L  S  V  I  C  A  I  S  P  E  N  K :   H  N  S  E  T  V  S  T  L  R  F  G  K  R  V  K  L  T  P  N  E  P  L  V  N  E  I  T  E  D  D  V  N  G  L  S  D  Q  I  R  Q  L  K  :  E  E  L  I  R  A  R  S  S  A  S  I  S  V  G  S  N  Y  G  S  F  R  G  P  N  V  R  E  S  L  N  Q  L  R  V  S  L  N  R  S  L  I  L  P  D  I  D  N  E  R  E  E  E  E  V  H  I  N  E  D  D  I  K  E  L  Q  L  Q  I  N  N  L  R  G  S  R  G  N  N  S  N  S  L  K  Y  S  S  G  E  S  E  H  Y  L  S  C  S  E  E  S  E  G  E  E  I  N  S  D  E  I  L  E  E  T  L  D  D  A  D  Q  E  M  E  T  M  Q  P  E  Y  C  S  S  I  S  I  G  P  S  R  H  S  A  D  L  P  G  P  V  L  S  E  S  P  K  F  R  N  M  Q  R  K  S  L  I  I  S  G  E  D  N  I  Q  S  S  S  K  S  S  E  L  P  S  L  P  Q  K  Q  D  L  V  Q  S  S  L  R  S  S  R  I  F  P  G  P  T  E  S  L  A  A  S  L  H  R  G  L  E  I  I  D  Y  H  Q  R  N  S  A  S  N  K  S  L  V  S  F  S  F  E  H  L  A  V  N  P  S  P  M  S  N  G  K  A  N  A  S  I  Q  T  S  S  E  E  G  Q  S  S  P  F  V  A  A  T  F  L  C  P  K  C  K  T  K  A  T  S  S  S  V  V  K  D  S  T  G  T  W  M  V  S  M  E  G  T  S  T  D  Q  :  D  S  E  K  V  L  F  Q  A  L  E  R  E  K  Q  L  E  S  V  C  K  D  Q  A  D  K  I  E  Q  L  N  Q  R  :  L  A  R  C  K  C  T  Q  E  Q  S  S  L  V  D  C  G  K  D  V  V  D  L  H  D  N  E  N  Q  A  S  I  I  Y  Q  N  G  S  Q  S  P  N  I  P  K  :  L  L  K  W  D  D  E  S  P  E  P  E  A  A  G  E  K  Y  E  T  K  E  I  Q  G  N  V  E  N  S  G  G  K  K  M  F  D  M  A  E  R  E  A  L  L  K  E  I  G  G  L  R  A  Q  L  K  S  D  G  A  S  T  N  K  S  L  E  R  T  R  S  S  L  L  A  Q  S  M  Q  L  R  K  S  G  V  Y  A  T  T  G  S  G  E  E  L  E  K  E  R  E  R  W  T  E  M  E  S  E  W  I  C  L  T  D  E  L  R  I  D  L  E  A  Y  R  Q  R  A  E  K  V  A  M  E  L  M  L  E  K  K  C  T  D  E  L  D  D  A  L  K  R  S  V  F  G  Q  A  R  I  I  E  H  Y  A  E  L  Q  E  K  Y  N  D  L  A  E  K  H  K  L  I  L  Q  G  I  Q  D  V  K  N  A  A  A  K  A  G  K  K  G  H  G  A  R  F  A  K  S  L  A  A  E  L  S  A  L  R  V  E  R  E  R  E  R  E  M  L  K  K  E  N  K  S  L  R  V  Q  L  K  D  T  A  E  A  V  H  A  A  G  E  L  L  V  R  L  R  E  A  E  E  T  A  S  L  A  E  :  E  N  F  T  Q  S  K  E  E  N  E  R  L  K  K  Q  I  E  K  L  K  R  K  H  K  M  E  M  I  T  M  K  Q  Y  L  A  E  S  R  L  P  E  A  A  L  R  P  P  I  Y  R  Q  D  S  D  V  A  N  N  D  N  N  N  T  I  Q  H  S  E  Y  D  D  D  Q  S  W  R  A  E  F  G  A  I  Y  Q  E  H  I  *  A  M  F  D  *  T  M  E  T  R  E  D  P  A  R  D  F  A  E  K  N  L  L  I  L  I  T  P  *  C  Y  S  G  M  N  W  L  Y  S  Y  *  F  Y  H  S  F  E  T  *  L  T  R  F  D  I  C  C  E  L  F  L  Q  L  V  N  N  N  A  Y  V  S  *  K  V  I  Q  L  Y  A  Q  V   : Y  K  I  K </first_frame>
            <second_frame>  L  V  Q  K  C  Q  K  T  D  S  *  A  T  F  L  R  L  R  S  E  I  Y  F  Q  N  Q  F  Q  L  R  K  S  *  V  Q  V  D  L  S  I  K  *  T  V  K  M  L  L  L  *  I  P  T  F  R  S  V  I  H  R  C  Y  L  R  V  R  Y  L  K  K  P  S  *  R  R  L  I  V  M  Y  R  Q  N  S  P  D  L  L  H  R  N  K  H  Q  K  L  L  I  H  Q  L  R :   L  L  Q  G  L  N  L  L  M  V  L  R  V  E  P  K  R  F  A  K  L  L  I  P  Q  C  V  L  L  I  E  S  L  T  L  T  W  F  L  V  Q  I  R  I  R :   K  M  Y  F  N  R  L  V  P  L  *  L  R  M  H  W  Q  V  T  T  L  L  S  *  L  M  D  R :   L  E  V  A  R  L  I  Q  C  G  D  L  L  V  P  L  L  K  F  H  H  L  M  V  F  K  A  L  C  R  A  F  F  R  H  C  F  L  V  Y  K  K :   S  K  R  T  L  K  V  N  R  *  I  T  S  V  V  A  R  S  *  R :   Y  M  M  N  T  L  G  I  Y  L  I  L  H  R  E  T  *  R :   *  W  M  I  Q  E  L  D  S  M  L  R  T  *  L  R  N  M  C  L  P  T  R  M  Y  H  K  C  *  L  R :   V  F  Q  V  E  K  L  D  Q  R  A  S  I  R  R  V  L  G  P  I  L  F  L  P  A  S  L  S  P  G  A  R :   S  P  H  Q  R  V  L  V  A  Q  R  *  A  E  *  A  L  L  I  L  L  D  L  T  K  I  Y  L  M  M  P  V  N  S  L  L  R  K  G  S  M  *  R  S  P  H  H  C  S   : G  I  W  L  M  S  S  L  K  G  V  S  P  G  N  L  R  M  F  R  T  A  V  P  L  *  L  I  *  *  E  N  H  L  V  G  M  L  N  S  P  S  Y  V  L  S  A  Q  K  T   : S  I  I  V  K  Q  *  A  L  *  D  L  G  N  G  L  N  S  H  Q  M  S  H  W  *  M  K  *  Q  K  T  M  L  M  A  *  V  I  R  F  A  N  *  R :   K  S  L  *  E  L  G  Q  V  Q  A  F  Q  S  E  A  T  M  D  P  S  E  D  Q  M  Y  V  K  V  *  I  S  *  E  *  A  L  T  V  H  S  S  Y  L  T  *  I  M  S  V  K  K  K  R  F  T  *  M  R  M  I  *  K  N  Y  S  S  R  S  I  T  Y  V  V  H  V  E  I  T  Q  T  L  S  S  I  H  L  E  K  V  N  T  I  S  A  V  Q  K  K  V  K  V  K  K  L  T  Q  M  R  Y  W  R  R  P  L  M  M  L  T  K  R  W  K  R  C  S  L  N  T  V  A  A  S  Q  *  A  H  P  A  I  L  L  I  F  L  A  R  C  Y  L  S  P  Q  S  F  G  T  C  R  G  R  A  *  L  S  P  V  K  I  I  F  K  V  P  P  K  V  L  N  C  L  P  C  H  R  N  K  T  L  S  S  L  L  *  G  P  A  E  Y  F  L  G  Q  L  N  P  W  L  P  V  Y  I  E  D  *  R  S  L  I  I  T  K  G  I  P  H  Q  I  N  L  W  F  P  S  L  L  N  I  W  Q  *  T  Q  A  Q  C  Q  M  V  R  P  M  L  L  F  K  H  H  R  K  R  D  N  L  L  L  L  *  P  L  H  S  C  V  Q  S  A  R  R  K  Q  H  P  L  V  L  L  R  I  A  L  G  H  G  W  F  P  W  K  G  Q  V  R  I  K :   I  R  R  K  F  C  S  K  L  *  R  E  R  S  S  L  K  V  Y  A  R  I  K  Q  T  K  L  S  S  *  T  N  D :   *  P  A  V  S  A  H  K  N  R  V  L  *  L  I  V  A  R  M  S  L  I  S  T  T  M  R  I  K  L  Q  *  S  I  R  M  G  V  N  H  P  T  S  Q  S :   S  *  N  G  T  M  K  V  L  S  L  K  L  Q  E  R  S  M  K  L  K  K  F  R  A  M  S  K  T  V  A  G  K  K  C  L  I  W  L  R  E  K  H  Y  L  K  K  L  E  A  *  G  P  N  *  S  Q  M  E  P  P  Q  T  N  H  L  K  E  P  D  P  L  C  *  H  N  Q  C  S  *  E  K  V  V  Y  M  L  L  R  V  L  V  K  N  L  R  R  K  E  K  D  G  L  R  W  K  V  S  G  F  V  *  L  M  S  L  E  L  I  L  R  L  I  A  S  V  Q  K  R  W  Q  W  N  *  C  W  R  R  N  A  R  M  S  W  M  M  P  S  K  D  P  S  L  G  K  P  E  *  L  S  I  T  R  N  Y  R  R  S  T  T  T  *  L  R  S  I  S  *  S  C  K  G  Y  K  M  *  K  M  L  Q  Q  K  Q  E  R  K  A  M  V  L  V  S  P  S  L  S  L  Q  S  C  Q  L  *  E  W  K  G  K  E  R  G  K  C  *  K  R  R  I  K  A  *  E  F  N  L  K  T  L  L  K  L  F  M  Q  P  E  N  F  L  L  D  *  E  K  R  R  K  Q  L  H  L  L  R :   R  T  L  H  N  Q  R  K  R  M  R  D  *  R  S  K  *  R  S  *  R  E  N  I  R  W  R  *  *  Q  *  N  S  I  L  L  K  A  D  C  Q  K  Q  R  *  D  R  L  F  T  G  K  T  L  M  *  Q  T  M  T  T  T  T  P  S  N  I  L  S  M  M  M  I  N  H  G  E  Q  N  L  A  L  F  I  K  N  T  Y  E  P  C  L  I  E  L  W  K  H  V  K  T  L  L  G  T  L  L  K  K  T  C  S  S  *  S  H  L  S  V  I  Q  G  *  I  G  C  I  L  I  D  F  I  I  L  L  K  L  D  *  P  D  L  T  F  V  V  S  C  F  F  S  L  L  I  I  M  L  M  Y  P  K  K  S  F  N  F  M  H  K  Y  :  T  K  *   </second_frame>
            <third_frame>   *  F  R  N  V  R  K  Q  I  L  R  Q  H  F  C  V  F  V  P  K  S  T  S  K  I  S  F  N  *  E  K  V  E  F  K  *  I  *  A  *  N  E  Q  *  K  C  C  S  Y  R  S  Q  R  S  D  Q  *  S  T  V  V  T  Y  E  F  D  T  *  K  N  R  L  E  D  D  *  *  *  C  I  D  R  T  H  Q  I  C  C  T  G  T  N  I  R  S  S  *  S  T  S  *   : G  C  C  K  D  *  T  C  *  W  Y  *  E  W  N  P  S  G  S  Q  S  F  *  Y  L  S  V  C  C  *  *  K  V  *  L  *  H  G  F  W  F  K  F  E  S   : G  R  C  I  S  I  G  W  C  P  F  S  *  G  C  I  G  R  L  Q  H  F  S  L  S  L  W  T   : D  W  K  W  Q  D  L  Y  N  V  G  T  S  *  F  H  C  *  S  S  I  T  *  W  S  S  R  H  C  A  A  H  F  S  D  I  V  F  *  Y  T  K   : R  A  R  E  L  *  R  *  T  D  K  L  P  V  S  L  L  V  P  R   : D  I  *  *  T  H  W  G  S  T  *  S  Y  T  E  K  L  K   : D  N  G  *  S  K  S  W  I  L  C  *  E  H  N  *  G  I  C  V  Y  L  R  G  C  I  T  N  V  D  *   : G  S  F  K  *  K  S  W  I  N  E  H  Q  F  E  E  F  *  V  P  Y  C  F  Y  L  R  H  *  V  L  V  Q   : G  V  L  I  N  V  F  W  *  L  K  D  E  Q  N  E  P  C  *  S  C  W  I  *  Q  K  Y  T  *  *  C  R  *  T  A  C  *  G  R  E  V  C  K  E  V  H  I  T  A  R  :  A  F  G  *  C  P  L  *  K  E  S  V  Q  E  T  *  G  C  F  V  Q  Q  F  H  F  D  S  F  N  E  R  I  T  W  W  E  C  *  T  L  R  H  M  C  Y  Q  P  R  K  Q  :  A  *  *  *  N  S  K  H  S  E  I  W  E  T  G  *  T  H  T  K  *  A  I  G  K  *  N  N  R  R  R  C  *  W  P  E  *  S  D  S  P  I  E   : G  R  A  Y  K  S  S  V  K  C  K  H  F  S  R  K  Q  L  W  I  L  Q  R  T  K  C  T  *  K  F  E  S  V  E  S  E  P  *  P  F  T  H  L  T  *  H  R  *  *  A  *  R  R  R  G  S  H  K  *  G  *  Y  K  R  T  T  A  P  D  Q  *  L  T  W  F  T  W  K  *  L  K  L  S  Q  V  F  I  W  R  K  *  T  L  S  Q  L  F  R  R  K  *  R  *  R  N  *  L  R  *  D  T  G  G  D  P  *  *  C  *  P  R  D  G  N  D  A  A  *  I  L  *  Q  H  L  N  R  P  I  P  P  F  C  *  S  S  W  P  G  V  I  *  V  P  K  V  S  E  H  A  E  E  E  L  N  Y  L  R  *  R  *  Y  S  K  F  L  Q  K  F  *  I  A  F  P  A  T  E  T  R  P  C  P  V  F  F  E  V  Q  Q  N  I  S  W  A  N  *  I  L  G  C  Q  S  T  *  R  T  R  D  H  *  L  S  P  K  E  F  R  I  K  *  I  F  G  F  L  L  F  *  T  F  G  S  E  P  K  P  N  V  K  W  *  G  Q  C  F  Y  S  N  I  I  G  R  G  T  I  F  S  F  C  S  R  Y  I  P  V  S  K  V  Q  D  E  S  N  I  L  *  C  C  *  G  *  H  W  D  M  D  G  F  H  G  R  D  K  Y  G  S   : R  F  G  E  S  F  V  P  S  S  R  E  R  E  A  A  *  K  C  M  Q  G  S  S  R  Q  N  *  A  A  K  P  T   : T  S  P  L  *  V  H  T  R  T  E  F  F  S  *  L  W  Q  G  C  R  *  S  P  R  Q  *  E  S  S  F  N  N  L  S  E  W  E  S  I  T  Q  H  P  K   : A  P  E  M  G  R  *  K  S  *  A  *  S  C  R  R  E  V  *  N  *  R  N  S  G  Q  C  R  K  Q  W  R  E  K  N  V  *  Y  G  *  E  R  S  T  T  *  R  N  W  R  P  K  G  P  I  E  V  R  W  S  L  H  K  Q  I  T  *  K  N  Q  I  L  F  V  S  T  I  N  A  A  E  K  K  W  C  I  C  Y  Y  G  F  W  *  R  T  *  E  G  K  R  K  M  D  *  D  G  K  *  V  D  L  S  N  *  *  A  *  N  *  S  *  G  L  S  P  A  C  R  K  G  G  N  G  I  N  V  G  E  E  M  H  G  *  V  G  *  C  P  Q  K  I  R  L  W  A  S  Q  N  N  *  A  L  R  G  I  T  G  E  V  Q  R  L  S  *  E  A  *  V  D  L  A  R  D  T  R  C  E  K  C  C  S  K  S  R  K  E  R  P  W  C  S  F  R  Q  V  S  R  C  R  A  V  S  F  E  S  G  K  G  K  R  E  G  N  A  E  K  G  E  *  K  L  E  S  S  T  *  R  H  C  *  S  C  S  C  S  R  R  T  S  C  *  I  E  R  S  G  G  N  S  F  T  C  *   : G  E  L  Y  T  I  K  G  R  E  *  E  I  E  E  A  N  R  E  A  E  E  K  T  *  D  G  D  D  N  N  E  T  V  S  C  *  K  P  I  A  R  S  S  V  E  T  A  Y  L  Q  A  R  L  *  C  S  K  Q  *  Q  Q  Q  H  H  P  T  F  *  V  *  *  *  S  I  M  E  S  R  I  W  R  Y  L  S  R  T  H  M  S  H  V  *  L  N  Y  G  N  T  *  R  P  C  S  G  L  C  *  K  K  P  A  H  L  D  H  T  L  V  L  F  R  D  E  L  A  V  F  L  L  I  L  S  F  F  *  N  L  I  D  Q  I  *  H  L  L  *  A  V  S  S  A  C  *  *  *  C  L  C  I  L  K  S  H  S  T  L  C  T  S  I :   Q  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0184E04.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129915" stop="129610"/>
                    <exon start="129370" stop="129236"/>
                    <exon start="128760" stop="128677"/>
                    <exon start="128593" stop="128468"/>
                    <exon start="128384" stop="128325"/>
                    <exon start="128241" stop="128188"/>
                    <exon start="128091" stop="127999"/>
                    <exon start="127867" stop="127772"/>
                    <exon start="127590" stop="127442"/>
                    <exon start="127101" stop="126952"/>
                    <exon start="126730" stop="126601"/>
                    <exon start="126509" stop="125595"/>
                    <exon start="125501" stop="125403"/>
                    <exon start="125314" stop="125180"/>
                    <exon start="125090" stop="124302"/>
                    <exon start="124216" stop="123950"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>3585</number_coding_nucleotides>
                  <number_encoded_amino_acids>1195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSEMSENRFLGNISASSFRNLLPKSVSTKKKLSSSRFKHKMNSENVAPIDPNVQISDPPLLPTSSILKKTVLKTIDSDVSTELTRSVAQEQTSEAPDPPVKVVARIKPANGIESGTQAVRKASDTSVCVADRKFNFDMVFGSNSNQEDVFQSVGAPLVKDALAGYNTSLLAYGQTGSGKTYTMWGPPSSIVEVPSPNGLQGIVPRIFQTLFSSIQKEQENSEGKQINYQCRCSFLEIYDEHIGDLLDPTQRNLKIMDDPRVGFYVENITEEYVSTYEDVSQMLIKGLSSRKVGSTSINSKSSRSHIVFTCVIESWCKESSSTCFGSSKMSRMSLVDLAGFDKNIPDDAGKQLVKEGKYVKKSTSLLGHLVNVLSERSQSRKLEDVSYSSSTLTHLMRESLGGNAKLSVICAISPENKHNSETVSTLRFGKRVKLTPNEPLVNEITEDDVNGLSDQIRQLKEELIRARSSASISVGSNYGSFRGPNVRESLNQLRVSLNRSLILPDIDNEREEEEVHINEDDIKELQLQINNLRGSRGNNSNSLKYSSGESEHYLSCSEESEGEEINSDEILEETLDDADQEMETMQPEYCSSISIGPSRHSADLPGPVLSESPKFRNMQRKSLIISGEDNIQSSSKSSELPSLPQKQDLVQSSLRSSRIFPGPTESLAASLHRGLEIIDYHQRNSASNKSLVSFSFEHLAVNPSPMSNGKANASIQTSSEEGQSSPFVAATFLCPKCKTKATSSSVVKDSTGTWMVSMEGTSTDQDSEKVLFQALEREKQLESVCKDQADKIEQLNQRLARCKCTQEQSSLVDCGKDVVDLHDNENQASIIYQNGSQSPNIPKLLKWDDESPEPEAAGEKYETKEIQGNVENSGGKKMFDMAEREALLKEIGGLRAQLKSDGASTNKSLERTRSSLLAQSMQLRKSGVYATTGSGEELEKERERWTEMESEWICLTDELRIDLEAYRQRAEKVAMELMLEKKCTDELDDALKRSVFGQARIIEHYAELQEKYNDLAEKHKLILQGIQDVKNAAAKAGKKGHGARFAKSLAAELSALRVEREREREMLKKENKSLRVQLKDTAEAVHAAGELLVRLREAEETASLAEENFTQSKEENERLKKQIEKLKRKHKMEMITMKQYLAESRLPEAALRPPIYRQDSDVANNDNNNTIQHSEYDDDQSWRAEFGAIYQEHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 501 chains have been computed
$ 
$ memory statistics:
$ 2792072 bytes spliced alignments in total
$ 205 spliced alignments have been stored
$ 13619 bytes was the average size of a spliced alignment
$ 38376 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1668 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 756 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 05:49:39
-->
