<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:07:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315262" ref_strand="+" ref_description="SGN-E315262 [cTOA-24-E8]">
      <seq>tgcaatgtgcatctttgctgtacgagcggtgatagttcagatagctttttatttgcatattcagacttatgtatataaaagagcagctgtcctttcaagacctttaatatttgcaacagcatttatgagttttttctcagttgttatagcattattcaaggacatacctgatattgttggtgacaagatctttggaattcaatcttttactgtccgcttgggtcaagagagggtcttttggatttgtattggtctacttgaaatggcttatcttgttgccatcgtagtgggtgcagcatcttccaacacctggagcaaatattttactattctgggtcattctgctttggctcttttactttggactcgtgccaaatcagtcgacttcagtagtaaagcagcaataacatccttttacatgttcatatggaagcttttttatgcagagtatctgctcataccgctcgtgaggtgaatgaatgtacaagcctctcaactttcactggaagtggtaaagttctcctagactttgaaaattattctaattctggtaaatgtaattttgggtaaaagaattgcacctaattgtgttgcattttcataatcagattaactgtttctgattattcagattctgtttgattattcccttaaaataaagggagaaggataaaaaatactcccaactttcgtctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="52402" stop="42571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52102" g_stop="52039" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52038" i_stop="51634" i_length="405">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.173" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51633" g_stop="51538" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="160" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51537" i_stop="45513" i_length="6025">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45512" g_stop="45441" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="232" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45440" i_stop="45349" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45348" g_stop="45253" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="328" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45252" i_stop="44201" i_length="1052">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44200" g_stop="44096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="433" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44095" i_stop="43139" i_length="957">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43138" g_stop="42869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="701" r_length="268" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E315262" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52102" e_stop="52039"/>
          <exon e_start="51633" e_stop="51538"/>
          <exon e_start="45512" e_stop="45441"/>
          <exon e_start="45348" e_stop="45253"/>
          <exon e_start="44200" e_stop="44096"/>
          <exon e_start="43138" e_stop="42869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGTGCATCTTTGCTGTACGAGCGGTGATAGTTCAGATAGCTTTTTATTTGCATATTCAGGTCTGTGTTAATTGCTATTTCTACAATTTATGCTTATCTTTTTGTTTTGCCCACAGAGAATGTATAGATTAAAGTATTTACTGTTCTACATGAAGACCTGATTTCAAATGTCAGAACAAGTATGATTTGATAAGGACCAAAAATCTTCTACTCTGTTATGTGATGTTTAGACTTCATTTATTGGAAAAGGGGGGGGGGGGAGTCATCTGGAAAACTCATATCTATTTCCTTGTGCATTCTCCGTAATCATCGTATTTAAATACATATTTGTTTGTCAGTTTGTTGTAAATATATATTCCTATTGACTAAAAATGAGATCAAGTATGTGTAAAGTTGTAGACTACCTGAATCACCTTTATGTCTGGTACTCCTCTCATTTCCTGACATAAGTATTTCACTTTTCAGACTTATGTATATAAAAGAGCAGCTGTCCTTTCAAGACCTTTAATATTTGCAACAGCATTTATGAGTTTTTTCTCAGTTGTTATAGCATTATTCAAGGTAAATTTGTTCTCTAAACCTGATTACATAAAAGATCATTTTTGTTTTAATCTTTATGAAGAAAGACACTTATTTTGTAAACCATAAGAAGAAATTATCGCAATGGAGGTCTAGGTGTTCTTTGCTTAGAAGAAGTAAATGTGTCCGGTTCATTACTTTGGTTTCACATAAAAATAATAATGGGAGAATTCGCTTCTCTGTTATCTAGTCTCTAGGTAGTGTTCATCCAACGATGTAGCACGGACCATGTAAACAGATTTATTTTGGAAGCATGAAGATATCTTGACACAAATAAGCAATTTAATTGAATGTACTATTAAGATACAGACTTCAGCAATGAGACATTCTGCATCACAAAATGTGATGCAAGGGTTAGTGGTTGAACTCTTTCCACTAATCTTTTTTTTTTAATCTGGTAACAGTTTGTATTAAATTCAGTACTACCTTAGTACTGGAAAAATCATATTTACAGAAGAGTATAAGAAAATAAATTCTAGACTGTTGGATTAGGAGGGGAGGCAGTAAGAGTCAAAAGAGATGGTGGAAGCTAATACCATCATGTGTATGGTGGTCAGTCTGGAAAGAAAGAAATGGAAGATGTTTTGAAGATAGATCCAATTCCATCCACTAAGTTAAATGGAATTGTATAGTATCTCTAATTTTTTGGTTTAAACAGCTTTGTATAGATGATATAGACCAGATTATAGATTTGATAGGAAATCTGTAATTATTCCTTTTTGGAGGTAGCCAGCATATCTTTAATGCTGAAGATTCAACCTTACCAGTTTCAAAAAAAATAAATAAAAAAAAATCTAAGGACTGTTTCAGTATCATCAGAAAGCCTTTGTACACCACAAACAGAAAAAAATACAGTTAAGCTTGAATTACTGTACATTGCACCTCCTATCTTCAAAACATTTGACATTTCTTTCTCTGCACATTGTCCACCAAATACATGCTAGGATTATCCTCCATCTATCTCTGCTTCTTGCACCAACTCCAGCTTCCTCCCAGCTGAAAGGAATGTTGACAATCTTACTAGACATTGTCCATGAGATGCCTCTGAGATTGATAGTAATCTTCCACTGTTGATCAGTGATTAGACAGTGCAGAAACAGGTGATTAACTGTCTCAGCATTATTACCACACAAAGAACATCTTGAACATAGGATATCCCCCTCATTCCAGATTTTCATGAGCAAGGACAGACTCATTGGCCAAGAGCCAAGTGAAACATGCTACTTTAAGAGGGTAATCTTCCAAATTTGCTTCCATGGACAGTTGGTAATAACTGGCTCAACTTGATCTAAAATCTTGTACCCACACCTTACCTTGTATTGACATTTGCTATGTCCCTTGCACCATAAACAGTCCAAAAACTTGTATAACTCAGTCAACCTTGGAATCTCCCAGTCATTCAAAGGTCTTCCGAGTATCAAGTCCAATCTCTGATGGTTCCACATCTCAGAAATCGTTTTGTATTGATGTTGGGCCAGAGCAAAATATCAGGGAATGGAGCTTGTAACCTAGTAAAACCCATCCAATTGTCTGTCCAAAAAAGAGTTCTGTTGCTATTGAAAACCTTGACATCAGACTCACTTTTAAGAAAAGTTAGTAGGACCTAATGGATCTCTAGAGACTTACACCATAAAGGGTAGTAACTTCTTTAGAGACCCAATTATCTAGAGATTTAGGAATCCTGACAGTACCTCCATAGCCATTTTTCACCTTTTGAGCTTTACTCAGATTCTTGAGGTTTTCGATACCTAACCCATCTTGACTTTTCCTTCTAATAAGATTTTTCCATTTGCTAAATGGAAACCTCTTCCTTCTTATTACCTTGTCAATGTAAAAGATCTTCTGAATTTATCCCTACTATGAGTAGCAGCCTGAGGGATATGGAATAGGGATATCATATATATTGGTTAAGCATCTAAAATAAAGTTAGTCAACATTAGTCTGCCTCCCAATAATAAATATTGTGATCTCCATCTGGACAACTTCTTCTCACACTTCTCCAAAATTGGATTCCAGATTTCTTTGGATTTGGATTTTGCTCCCAAAGGCATGCCAAGATACACTGAAGGCAAGGTACCCACTACACCACCCAAAATCTGTGTCAGATACAACATATAGGTACCAAATTAATTGGAATAAGGTGGCTCTTATATTCCAGTTAATGTGAAGCCCAGGGATGCCTTCAGAGAAATCACAATTAATCTCTAAAACAACCATTATTCCTCATCCGCATCATGTAAAATTAGAGTATCATCAACATATTCTAGATGAGTGATCTCTAGATTATATTCATTGTGTTTCTGGCAACTTCAAAATCCTGACTCTTTTCATTTGTCTTAGCAATTTTAAGCATGTTGTTAAGATCCTCCATTGCTATAACAAATAAGAAAGGGATAGGGGATCCCCTCGTCTTATCCCTCTATTGTAAACTGAAAAAACCTTACTGGTGTCGTATTAGTAGGATGGAAAATTTCACAGTTGAGATACAGAATTTCACCCAATTGATCCACTTCTGTCTCAGTTTTCTGTGGATGACCTCAAGTTGACATGGTCATATGCTTTGTCAATCGAGTTCGCATAGGATGTCGGGCTTCCTTTGTGGAGATTGATTTTAGACCATGTTCCAGTAGCTTTTCTATATGGTCACTGTCAACATACTAAATCATATTTTAAATTTGAGAATTGGTGGTTAAACTCTGAAGGTTTTTTTTGATAGAATCAAAAGTTGGTGGTCTTCCTTTGCGTTCTCTGGAAGCCTAATTACATTCGGGCTTGTAAACTTAAAGCTCTCAACGGTAAACTTAAAGAATGGAGCAGGGGAACTTGAGGCTTCAAAAATCTAAATTGTTGAGTCAATTTGCTGATTTAGATTCCATATTAGAAAGCAGAGAATTGATAGAAGAGGAAATTGTAAAGAAAGCTACTGCCTTCATGGAATATGAAAAAAGCCAAAAGCCTTAGGAATGAAGAGGTGTCCTGGAGACAGAGATCTAGAGGCTTATGGCTCAAAGAGGGGGACAGGAACACCTACTTTTCCCACCAAACTGCTAGTGCCAATAAGAGATACCAGTGTTTTGGATGGCGAAAGGCGACAATGGCCTGGCTCGCCTCCCCTCGCGGTGAGGCGAGGCACTTGCCTTTTGAAATGAGGCGCCAATTAATACCAAAAATTAAAAATATTTAATCGCATAGATAAATATCCAAAATCTCAATAGCAATAACATATATTAGCAAATAATTCAATTCAAAAACTAATAGTAGATACTAAAAGTCTAGAACTTAAAAGACCCAATAATCAGAAGACAATACTAGAACTCTACAACTAAAAGTTTATTCTTCTTCAAAACTATCCAACTCTTTATTTTTGAAACTCGTAATGTTGTATTCTTCAGCATTAAGGGCATGCTGGCCACCACCAAAAAGTGTCAATTGCAAACTTCCTATCAAATCTACAATCTGGTCTGTATCTACTATACACAACTGTTTACACCAAAAAAGTAGATATACTATACAATTCCATTTGACCTTGTATATGGAATTGGATCTATTGTCGAAACATCTACTGTTCCTTTCCTTCCAAACTGACCACCATATACATGATAGTATTAACCTCCACCATCTCTTCTGGCTCTTGGTACCTCCTCTCCTTACCCACCTCTTCAACACGTTTGATGTACGTTCTGGCATAGTCCAATTCTAATTTGAGATGCTAAGGAACAAATTCCAGATTTGAGCAGTGTAATTACAGTGCAAGAAGAGGTGACTGTTGGTTTCACTTGTCAAATTGCATAAAAAACACCTAGGACCAGCTGTCTACCCTTCTTCTGAAGTACTTCTTGTGTTAAACAAGCTCTCTTTATCACTAGCCAAGTGAAGCATTTCACTTTATAGGAGTATCCCCCTTCCAAAGATAGTTCCAGAGGTGTTTTGGCCTCTCTGCCATCACTTGGAGACCTCTTCTGTAAGCACTGTTGACTGAGAAAAGGCCTTCTTTGCTGTGCTTCCACAACATCCTGTCTGTGACATTGGCGTTGAAGATCAAAACTATCCAACTCTTGAAGATCAACATCCTCTACATCATTATATTGCTCCTCATCTTCTTCCTCATATTCTTCATCAATTAGTGTCCGAGCCCTACTTGAAGTTGAACTTGTATGTGTAGTTTCTACTCCTTTGTCTTTGTCAAGTGCTCTTGATCTTGAAGAAAGTTACGTAAGATGATAGATACTCTCAGCAATTCCAATTGCCATAGCAACACTACCCCAAGTAAGATCATCATCCTCATATATTAGTTCATCTTCTTGATCTTCGGGGCATCCAACTAACCATTCATTTGAAATTTTGAATCCAAGCAAACTGGATTAATGAGTTCACAAGCATCATAAGTCATAATGACGTTTCAATGTTCTATTGTACTTAATGTATAGTAGATCATTGAGACGCGATAGTGCAAGCCTATTCCTATTTTTGGAATGAATCTGCACATAATTTATAGATATTAACTAATGTCTAATAGATACTGATAATAATATAATATGGAAATTAGGATATATCTTTTTACTTGCGTGTTCAAACACACTCCAATTTCGCTCACATCCGGATGAGCTACAAGTTAGGCTTAGGGCCTGTTTGGATTGACTTTTTGCTTATGACTATAAGCCAAAAGCCATAAGTTAGGATTTCTAACTTATGACTTTTGGCTTATTTTTGTTATTTTGGCTTTAAAATAAGTGCTTAAAAGCTATTTTGGCTTAGAAGCACCTAAAATAAGTCAATCCAAACGGGCACTTAATACTTTCATGGCAAACTTTTGCAATTTGGTGTTTTACTACCAAATAGTGACCACCATTCAACTATAATAAAATGAATTTAAAGGTTAATGAGCATAAATAAGTCAAATAATTGAAGTAAGAGCTAAATCAACTCACTTACCCGATGACCTTATGTCTTTAGCTCTTTTAGCCGGACCACAACCAAATAGTCCATCCGCCATTTTGTACCTAGGAAGCTTAGCGACTAGTAAATCTTGTATTGCTGTATCGGGGATCACCTTCTCAATTACATGCATAATACTCATCCCACAGAGTCTTTAGTAAAGTTCCCTCCTCTTGAGCTTTATAAAACATTCTTGGGTTCAAAACATGGCTTGCAGCATGCAAAGGCCGATGAAGTTGGTCTAACCACCTTGCATCAATAATTTCAAACACTTTCTCATTTTGCTTCTCAACTCCACAAAAACCCCGTGGATTAGTTTCCTTGGCTCTATCCATTGCTTCATAAATATAGCCCATTGGTGGTTTTTCTCCCTATCCACCAAACAAAGCACTTTTGTCAAAGGGCAACAAACTGTAAGTGCTCGAACAACATCATTCCAAATGTGGGCAGAAATAATAAGGTTGACAACTTCTTTCCCCAAAGTTTCTTTTGCAAATTTACTTGAAGTCCATTCAGTTGAGAGGACTGAAATTCTCAAGTTTTTCCTTTGTATGTACATAAACTGACAAAGTTAAGAAGGCCGTTGCAAATCTTGTCTTAGCGGGTTTTACCAAATTTCTTTCCTTGGTGAATTTTCTTATCAATTTTAACAACAATGACCTTTGACTAATGTAAGAATGGATTTTGTTGGCCTTCTTAAAAACAGTTAAAGTAAAATTTTTGTAATTAGTAGCTAATGAGTATTAAGTATTGACTATAAAAAAAGTTAAAGGATAGGAGAGTGATATTACCAGAAGCATATGGATTAACCTGGATGCTGGACTAATGTCACTAAAGAACTAATTTCTCTCATGACGCTAGACTAATGTCATGTTGCTCAAAAGAGATCAGAAATGAAAACTGAATATTTGATGTAGCTAGAAGTCAAAGTAAGGCAACAATGTAAAATTCACTAAAAAGTTTAGAAAACTAAATTTCTCTCTAGCCTCATAGCCTGAAATGTGATCATTTTTAGATATTTGCAATAAATCCAAGCTACGGAAAGTCATCTAATTTTCACATGCTACTGTAGGACATACCTGATATTGTTGGTGACAAGATCTTTGGAATTCAATCTTTTACTGTCCGCTTGGGTCAAGAGAGGGTAAGTATCAAAGTCTGGCTAATGACTTGAGGCATTTGTTCACTCTATTTTATTGTCTCATATACTTGACTATACTTGTTCACTTTTGGCAGGTCTTTTGGATTTGTATTGGTCTACTTGAAATGGCTTATCTTGTTGCCATCGTAGTGGGTGCAGCATCTTCCAACACCTGGAGCAAATATTTTACTGTAATCCACCTTGAACTCTTATAATTGTTTCATAGAGAGATTGTTAATTATAAAAAAACGAGAGCAAGTAAATAGATTGCTAAAGACTAGCTGTTACTTTATCCTCCTCAGACTCCAAGTTTGGGGGGATTACACTAGGTATGTTATTGTTGTTGGATCTCTGCCCTGCATGAGAGTTTTTCTTCTAACTTTTGAGGCTTATATAACACGACTCCATAGAGAAGTGTAAACACAGCCAAATTAGAAGTCTGCTTGCTCATCTATCTGCATTGTTATTTCATAATCAAGGATTTTCAGCTTTGGGGTTCTTAACTTTCAGACAAAGCAAGAGAAGAATGTAATATTAATTTGATTGAAAAGGAAAATATCTCTCATCCTTAGCACATAAATCATATATCTGTAGTGGCTGAAGTCTGTTACCTCATTTTTACTTGAAAAAAGAAACATGGGACAGGCGTGGCAAATAATGACTTCATTGCCAGATCCTCCCAACAGAAAATATAGCCAAATTTCTTCCCTTCTGTTATAAATCATCACCACCATCGCCTTCACCAATATCCTGTAGTGGGCATCTCCCCTTTTTGTGCTCCATCTTGCTGGAGTAGTGTGTTGTAATTAAAGAAGCAGTCTGGACTTTATTATCAAGAAGAATTTAAAAAGGTAAACCTAGTCTTTTCTTTGTCGTTGCTTTTCCTTCCATTTCTTCCTACAGGCTTTTATCGTATCTTGATTCTACTTTGTATCCTACTTTCTTGTTTGTTCTTAGCTCTTTGTCTTAACATCTTCCAGAAGTTGTCGTCTCAATGAGGCAGTGGATTGGGGTATCAGTTCATTTATCCTGTTTTTGTCTGAGATATCAGGCTACATGTTTTTACCAACAATAAGTTAATCAAAATAGGAAAAATTAAGTACCAAATGTTTCCAAGATATTGTTACTGACGCAACGGTGAGTAACCAGTGTATGGTCATTGTGTAATAGGTTAGTCTTTGTTCAACATTTGAGCTTCCAAATGACTTGCACTGACATGTGTACTTATTTTTGCATTTGTCAGATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAGGTAAGATTTCTCCCAGCATTCTGGAAAATGTAACGAAGTCATGGAAAATGACTGCACGTTAGCTCAAAGCAGTGGCGTATTCAGTACGTAAAGCAAGAAAATAAAATCTTTTCTAGCTTTATTGTTGCGCATAAACATATCTTTGGCCTTAAAACTACTGTACCTTTGATTTTCCTGCACTTGCTAGAGTATAATGGAGGTACAAAATGCTAATCTCTTATTGGTACATGCTTATATCATCTGACTTGTACGAATTTTGATTGCACTTATTTAGTCTCTTAGCTTGGTGTTCAAGCATGACCTTTATCTGAAGATCCTTTGGTTGAACTTCATATTTGTTTTTCATTTTTGATATAATAACTATGTTCTTATTAAATATGTTATCTTAAATTGTAACTCTATATTATCTCATGCTGTAAATCGAAAATGATTTGGGTTTAATAACAAGTGTCTTTACGGCTTTTTTCTGACATAATACCCGCACTTAGTTCTTTGGACTAACGTTAGGGCAAGTAGATTAAAACCATAGAGCAACATGATGTCGAGAGAATTTTACAGCATTAGATATTGACCAGCCTTAGTTCTCAATCTCAAGAACAAACCTAGGTAATAACTTTCTCTCCAAGACTCGACTTAGATTTTCCCCCACAGGAAACATTGTTTTTATAAGCTTACACAAAAGTGGAGTAATATGTATAGAAGCTGAAGGGGTGAAACTCGCAATTTATAGTCTCAAAAGTAATCATACTGTAGCATCAATAATGCCTATTTTACACTACAATAGTGAAGAATACTTTGGCAATATCACTACAAGGTTAAGCTTGAATCTGTTGCTAGAGTTTTGTACAAAATGTACCTTAGTTTCTTTCTTTAATTAGCTTGAACCTTGCATATACAGTTCATCTTTTTAGGACTCGTTTCGATCAATTTAACCTTTTTCATTATTGTTGCTGGCAGCTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAATGTAATTTTGGGTAAAAGAAATTGCACCTAATTGTGTTGCATTTTCATAATCAGATTAACTGTTTCTGATTATTCAGATTCTGTTTGATTATTCCCTTAAAATAAAGGGAGAAGGATAAAAAAATACTCCCAACTTTCGTCTAATAGT</genome_strand>
        <mrna_strand>TGCAATGTGCATCTTTGCTGTACGAGCGGTGATAGTTCAGATAGCTTTTTATTTGCATATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGTATATAAAAGAGCAGCTGTCCTTTCAAGACCTTTAATATTTGCAACAGCATTTATGAGTTTTTTCTCAGTTGTTATAGCATTATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATACCTGATATTGTTGGTGACAAGATCTTTGGAATTCAATCTTTTACTGTCCGCTTGGGTCAAGAGAGG............................................................................................GTCTTTTGGATTTGTATTGGTCTACTTGAAATGGCTTATCTTGTTGCCATCGTAGTGGGTGCAGCATCTTCCAACACCTGGAGCAAATATTTTACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAATGTAATTTTGGGTAAAAG-AATTGCACCTAATTGTGTTGCATTTTCATAATCAGATTAACTGTTTCTGATTATTCAGATTCTGTTTGATTATTCCCTTAAAATAAAGGGAGAAGGAT-AAAAAATACTCCCAACTTTCGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349619" ref_strand="+" ref_description="SGN-E349619 [cTOS-1-J4]">
      <seq>atcttccaacacctggagcaaatattttactattctgggtcattctgctttggctcttttactttggactcgtgccaaatcagtcgacttcagtagtaaagcagcaataacatccttttacatgttcatatggaagcttttttatgcagagtatctgctcataccgctcgtgaggtgaatgaatgtacaagcctctcaactttcactggaagtggtaaagttctcctagactttgaaaattattctaattctggtaaatgtaattttgggtaaaagaaattgcacctaattgtgttgcattttcataatcagattaactgtttctgattattcagattctgtttgattattcccttaaaataaagggagaaggataaaaaaatactcccaactttcgtctnnnnnaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="45583" stop="42575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45283" g_stop="45253" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45252" i_stop="44201" i_length="1052">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44200" g_stop="44096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="136" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="43139" i_length="957">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43138" g_stop="42871" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="404" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="438"/>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E349619" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45283" e_stop="45253"/>
          <exon e_start="44200" e_stop="44096"/>
          <exon e_start="43138" e_stop="42871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCCAACACCTGGAGCAAATATTTTACTGTAATCCACCTTGAACTCTTATAATTGTTTCATAGAGAGATTGTTAATTATAAAAAAACGAGAGCAAGTAAATAGATTGCTAAAGACTAGCTGTTACTTTATCCTCCTCAGACTCCAAGTTTGGGGGGATTACACTAGGTATGTTATTGTTGTTGGATCTCTGCCCTGCATGAGAGTTTTTCTTCTAACTTTTGAGGCTTATATAACACGACTCCATAGAGAAGTGTAAACACAGCCAAATTAGAAGTCTGCTTGCTCATCTATCTGCATTGTTATTTCATAATCAAGGATTTTCAGCTTTGGGGTTCTTAACTTTCAGACAAAGCAAGAGAAGAATGTAATATTAATTTGATTGAAAAGGAAAATATCTCTCATCCTTAGCACATAAATCATATATCTGTAGTGGCTGAAGTCTGTTACCTCATTTTTACTTGAAAAAAGAAACATGGGACAGGCGTGGCAAATAATGACTTCATTGCCAGATCCTCCCAACAGAAAATATAGCCAAATTTCTTCCCTTCTGTTATAAATCATCACCACCATCGCCTTCACCAATATCCTGTAGTGGGCATCTCCCCTTTTTGTGCTCCATCTTGCTGGAGTAGTGTGTTGTAATTAAAGAAGCAGTCTGGACTTTATTATCAAGAAGAATTTAAAAAGGTAAACCTAGTCTTTTCTTTGTCGTTGCTTTTCCTTCCATTTCTTCCTACAGGCTTTTATCGTATCTTGATTCTACTTTGTATCCTACTTTCTTGTTTGTTCTTAGCTCTTTGTCTTAACATCTTCCAGAAGTTGTCGTCTCAATGAGGCAGTGGATTGGGGTATCAGTTCATTTATCCTGTTTTTGTCTGAGATATCAGGCTACATGTTTTTACCAACAATAAGTTAATCAAAATAGGAAAAATTAAGTACCAAATGTTTCCAAGATATTGTTACTGACGCAACGGTGAGTAACCAGTGTATGGTCATTGTGTAATAGGTTAGTCTTTGTTCAACATTTGAGCTTCCAAATGACTTGCACTGACATGTGTACTTATTTTTGCATTTGTCAGATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAGGTAAGATTTCTCCCAGCATTCTGGAAAATGTAACGAAGTCATGGAAAATGACTGCACGTTAGCTCAAAGCAGTGGCGTATTCAGTACGTAAAGCAAGAAAATAAAATCTTTTCTAGCTTTATTGTTGCGCATAAACATATCTTTGGCCTTAAAACTACTGTACCTTTGATTTTCCTGCACTTGCTAGAGTATAATGGAGGTACAAAATGCTAATCTCTTATTGGTACATGCTTATATCATCTGACTTGTACGAATTTTGATTGCACTTATTTAGTCTCTTAGCTTGGTGTTCAAGCATGACCTTTATCTGAAGATCCTTTGGTTGAACTTCATATTTGTTTTTCATTTTTGATATAATAACTATGTTCTTATTAAATATGTTATCTTAAATTGTAACTCTATATTATCTCATGCTGTAAATCGAAAATGATTTGGGTTTAATAACAAGTGTCTTTACGGCTTTTTTCTGACATAATACCCGCACTTAGTTCTTTGGACTAACGTTAGGGCAAGTAGATTAAAACCATAGAGCAACATGATGTCGAGAGAATTTTACAGCATTAGATATTGACCAGCCTTAGTTCTCAATCTCAAGAACAAACCTAGGTAATAACTTTCTCTCCAAGACTCGACTTAGATTTTCCCCCACAGGAAACATTGTTTTTATAAGCTTACACAAAAGTGGAGTAATATGTATAGAAGCTGAAGGGGTGAAACTCGCAATTTATAGTCTCAAAAGTAATCATACTGTAGCATCAATAATGCCTATTTTACACTACAATAGTGAAGAATACTTTGGCAATATCACTACAAGGTTAAGCTTGAATCTGTTGCTAGAGTTTTGTACAAAATGTACCTTAGTTTCTTTCTTTAATTAGCTTGAACCTTGCATATACAGTTCATCTTTTTAGGACTCGTTTCGATCAATTTAACCTTTTTCATTATTGTTGCTGGCAGCTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAATGTAATTTTGGGTAAAAGAAATTGCACCTAATTGTGTTGCATTTTCATAATCAGATTAACTGTTTCTGATTATTCAGATTCTGTTTGATTATTCCCTTAAAATAAAGGGAGAAGGATAAAAAAATACTCCCAACTTTCGTCTAATA</genome_strand>
        <mrna_strand>ATCTTCCAACACCTGGAGCAAATATTTTACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAATGTAATTTTGGGTAAAAGAAATTGCACCTAATTGTGTTGCATTTTCATAATCAGATTAACTGTTTCTGATTATTCAGATTCTGTTTGATTATTCCCTTAAAATAAAGGGAGAAGGATAAAAAAATACTCCCAACTTTCGTCTNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315197" ref_strand="+" ref_description="SGN-E315197 [cTOA-24-F8]">
      <seq>tgcaatgtgcatctttgctgtacgagcggtgatagttcagatagctttttatttgcatattcagacttatgtatataaaagagcagctgtcctttcaagacctttaatatttgcaacagcatttatgagttttttctcagttgttatagcattattcaaggacatacctgatattgttggtgacaagatctttggaattcaatcttttactgtccgcttgggtcaagagagggtcttttggatttgtattggtctacttgaaatggcttatcttgttgccatcgtagtgggtgcagcatcttccaacacctggagcaaatattttactattctgggtcattctgctttggctcttttactttggactcgtgccaaatcagtcgacttcagtagtaaagcagcaataacatccttttacatgttcatatggaagcttttttatgcagagtatctgctcataccgctcgtgaggtgaatgaatgtacaagcctctcaactttcactggaagtggtaaagttctcctagactttgaaaattattctaattctgggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="52402" stop="42716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52102" g_stop="52039" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52038" i_stop="51634" i_length="405">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.173" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51633" g_stop="51538" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="160" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51537" i_stop="45513" i_length="6025">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45512" g_stop="45441" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="232" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45440" i_stop="45349" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45348" g_stop="45253" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="328" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45252" i_stop="44201" i_length="1052">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44200" g_stop="44096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="433" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44095" i_stop="43139" i_length="957">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43138" g_stop="43016" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="556" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E315197" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52102" e_stop="52039"/>
          <exon e_start="51633" e_stop="51538"/>
          <exon e_start="45512" e_stop="45441"/>
          <exon e_start="45348" e_stop="45253"/>
          <exon e_start="44200" e_stop="44096"/>
          <exon e_start="43138" e_stop="43016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGTGCATCTTTGCTGTACGAGCGGTGATAGTTCAGATAGCTTTTTATTTGCATATTCAGGTCTGTGTTAATTGCTATTTCTACAATTTATGCTTATCTTTTTGTTTTGCCCACAGAGAATGTATAGATTAAAGTATTTACTGTTCTACATGAAGACCTGATTTCAAATGTCAGAACAAGTATGATTTGATAAGGACCAAAAATCTTCTACTCTGTTATGTGATGTTTAGACTTCATTTATTGGAAAAGGGGGGGGGGGGAGTCATCTGGAAAACTCATATCTATTTCCTTGTGCATTCTCCGTAATCATCGTATTTAAATACATATTTGTTTGTCAGTTTGTTGTAAATATATATTCCTATTGACTAAAAATGAGATCAAGTATGTGTAAAGTTGTAGACTACCTGAATCACCTTTATGTCTGGTACTCCTCTCATTTCCTGACATAAGTATTTCACTTTTCAGACTTATGTATATAAAAGAGCAGCTGTCCTTTCAAGACCTTTAATATTTGCAACAGCATTTATGAGTTTTTTCTCAGTTGTTATAGCATTATTCAAGGTAAATTTGTTCTCTAAACCTGATTACATAAAAGATCATTTTTGTTTTAATCTTTATGAAGAAAGACACTTATTTTGTAAACCATAAGAAGAAATTATCGCAATGGAGGTCTAGGTGTTCTTTGCTTAGAAGAAGTAAATGTGTCCGGTTCATTACTTTGGTTTCACATAAAAATAATAATGGGAGAATTCGCTTCTCTGTTATCTAGTCTCTAGGTAGTGTTCATCCAACGATGTAGCACGGACCATGTAAACAGATTTATTTTGGAAGCATGAAGATATCTTGACACAAATAAGCAATTTAATTGAATGTACTATTAAGATACAGACTTCAGCAATGAGACATTCTGCATCACAAAATGTGATGCAAGGGTTAGTGGTTGAACTCTTTCCACTAATCTTTTTTTTTTAATCTGGTAACAGTTTGTATTAAATTCAGTACTACCTTAGTACTGGAAAAATCATATTTACAGAAGAGTATAAGAAAATAAATTCTAGACTGTTGGATTAGGAGGGGAGGCAGTAAGAGTCAAAAGAGATGGTGGAAGCTAATACCATCATGTGTATGGTGGTCAGTCTGGAAAGAAAGAAATGGAAGATGTTTTGAAGATAGATCCAATTCCATCCACTAAGTTAAATGGAATTGTATAGTATCTCTAATTTTTTGGTTTAAACAGCTTTGTATAGATGATATAGACCAGATTATAGATTTGATAGGAAATCTGTAATTATTCCTTTTTGGAGGTAGCCAGCATATCTTTAATGCTGAAGATTCAACCTTACCAGTTTCAAAAAAAATAAATAAAAAAAAATCTAAGGACTGTTTCAGTATCATCAGAAAGCCTTTGTACACCACAAACAGAAAAAAATACAGTTAAGCTTGAATTACTGTACATTGCACCTCCTATCTTCAAAACATTTGACATTTCTTTCTCTGCACATTGTCCACCAAATACATGCTAGGATTATCCTCCATCTATCTCTGCTTCTTGCACCAACTCCAGCTTCCTCCCAGCTGAAAGGAATGTTGACAATCTTACTAGACATTGTCCATGAGATGCCTCTGAGATTGATAGTAATCTTCCACTGTTGATCAGTGATTAGACAGTGCAGAAACAGGTGATTAACTGTCTCAGCATTATTACCACACAAAGAACATCTTGAACATAGGATATCCCCCTCATTCCAGATTTTCATGAGCAAGGACAGACTCATTGGCCAAGAGCCAAGTGAAACATGCTACTTTAAGAGGGTAATCTTCCAAATTTGCTTCCATGGACAGTTGGTAATAACTGGCTCAACTTGATCTAAAATCTTGTACCCACACCTTACCTTGTATTGACATTTGCTATGTCCCTTGCACCATAAACAGTCCAAAAACTTGTATAACTCAGTCAACCTTGGAATCTCCCAGTCATTCAAAGGTCTTCCGAGTATCAAGTCCAATCTCTGATGGTTCCACATCTCAGAAATCGTTTTGTATTGATGTTGGGCCAGAGCAAAATATCAGGGAATGGAGCTTGTAACCTAGTAAAACCCATCCAATTGTCTGTCCAAAAAAGAGTTCTGTTGCTATTGAAAACCTTGACATCAGACTCACTTTTAAGAAAAGTTAGTAGGACCTAATGGATCTCTAGAGACTTACACCATAAAGGGTAGTAACTTCTTTAGAGACCCAATTATCTAGAGATTTAGGAATCCTGACAGTACCTCCATAGCCATTTTTCACCTTTTGAGCTTTACTCAGATTCTTGAGGTTTTCGATACCTAACCCATCTTGACTTTTCCTTCTAATAAGATTTTTCCATTTGCTAAATGGAAACCTCTTCCTTCTTATTACCTTGTCAATGTAAAAGATCTTCTGAATTTATCCCTACTATGAGTAGCAGCCTGAGGGATATGGAATAGGGATATCATATATATTGGTTAAGCATCTAAAATAAAGTTAGTCAACATTAGTCTGCCTCCCAATAATAAATATTGTGATCTCCATCTGGACAACTTCTTCTCACACTTCTCCAAAATTGGATTCCAGATTTCTTTGGATTTGGATTTTGCTCCCAAAGGCATGCCAAGATACACTGAAGGCAAGGTACCCACTACACCACCCAAAATCTGTGTCAGATACAACATATAGGTACCAAATTAATTGGAATAAGGTGGCTCTTATATTCCAGTTAATGTGAAGCCCAGGGATGCCTTCAGAGAAATCACAATTAATCTCTAAAACAACCATTATTCCTCATCCGCATCATGTAAAATTAGAGTATCATCAACATATTCTAGATGAGTGATCTCTAGATTATATTCATTGTGTTTCTGGCAACTTCAAAATCCTGACTCTTTTCATTTGTCTTAGCAATTTTAAGCATGTTGTTAAGATCCTCCATTGCTATAACAAATAAGAAAGGGATAGGGGATCCCCTCGTCTTATCCCTCTATTGTAAACTGAAAAAACCTTACTGGTGTCGTATTAGTAGGATGGAAAATTTCACAGTTGAGATACAGAATTTCACCCAATTGATCCACTTCTGTCTCAGTTTTCTGTGGATGACCTCAAGTTGACATGGTCATATGCTTTGTCAATCGAGTTCGCATAGGATGTCGGGCTTCCTTTGTGGAGATTGATTTTAGACCATGTTCCAGTAGCTTTTCTATATGGTCACTGTCAACATACTAAATCATATTTTAAATTTGAGAATTGGTGGTTAAACTCTGAAGGTTTTTTTTGATAGAATCAAAAGTTGGTGGTCTTCCTTTGCGTTCTCTGGAAGCCTAATTACATTCGGGCTTGTAAACTTAAAGCTCTCAACGGTAAACTTAAAGAATGGAGCAGGGGAACTTGAGGCTTCAAAAATCTAAATTGTTGAGTCAATTTGCTGATTTAGATTCCATATTAGAAAGCAGAGAATTGATAGAAGAGGAAATTGTAAAGAAAGCTACTGCCTTCATGGAATATGAAAAAAGCCAAAAGCCTTAGGAATGAAGAGGTGTCCTGGAGACAGAGATCTAGAGGCTTATGGCTCAAAGAGGGGGACAGGAACACCTACTTTTCCCACCAAACTGCTAGTGCCAATAAGAGATACCAGTGTTTTGGATGGCGAAAGGCGACAATGGCCTGGCTCGCCTCCCCTCGCGGTGAGGCGAGGCACTTGCCTTTTGAAATGAGGCGCCAATTAATACCAAAAATTAAAAATATTTAATCGCATAGATAAATATCCAAAATCTCAATAGCAATAACATATATTAGCAAATAATTCAATTCAAAAACTAATAGTAGATACTAAAAGTCTAGAACTTAAAAGACCCAATAATCAGAAGACAATACTAGAACTCTACAACTAAAAGTTTATTCTTCTTCAAAACTATCCAACTCTTTATTTTTGAAACTCGTAATGTTGTATTCTTCAGCATTAAGGGCATGCTGGCCACCACCAAAAAGTGTCAATTGCAAACTTCCTATCAAATCTACAATCTGGTCTGTATCTACTATACACAACTGTTTACACCAAAAAAGTAGATATACTATACAATTCCATTTGACCTTGTATATGGAATTGGATCTATTGTCGAAACATCTACTGTTCCTTTCCTTCCAAACTGACCACCATATACATGATAGTATTAACCTCCACCATCTCTTCTGGCTCTTGGTACCTCCTCTCCTTACCCACCTCTTCAACACGTTTGATGTACGTTCTGGCATAGTCCAATTCTAATTTGAGATGCTAAGGAACAAATTCCAGATTTGAGCAGTGTAATTACAGTGCAAGAAGAGGTGACTGTTGGTTTCACTTGTCAAATTGCATAAAAAACACCTAGGACCAGCTGTCTACCCTTCTTCTGAAGTACTTCTTGTGTTAAACAAGCTCTCTTTATCACTAGCCAAGTGAAGCATTTCACTTTATAGGAGTATCCCCCTTCCAAAGATAGTTCCAGAGGTGTTTTGGCCTCTCTGCCATCACTTGGAGACCTCTTCTGTAAGCACTGTTGACTGAGAAAAGGCCTTCTTTGCTGTGCTTCCACAACATCCTGTCTGTGACATTGGCGTTGAAGATCAAAACTATCCAACTCTTGAAGATCAACATCCTCTACATCATTATATTGCTCCTCATCTTCTTCCTCATATTCTTCATCAATTAGTGTCCGAGCCCTACTTGAAGTTGAACTTGTATGTGTAGTTTCTACTCCTTTGTCTTTGTCAAGTGCTCTTGATCTTGAAGAAAGTTACGTAAGATGATAGATACTCTCAGCAATTCCAATTGCCATAGCAACACTACCCCAAGTAAGATCATCATCCTCATATATTAGTTCATCTTCTTGATCTTCGGGGCATCCAACTAACCATTCATTTGAAATTTTGAATCCAAGCAAACTGGATTAATGAGTTCACAAGCATCATAAGTCATAATGACGTTTCAATGTTCTATTGTACTTAATGTATAGTAGATCATTGAGACGCGATAGTGCAAGCCTATTCCTATTTTTGGAATGAATCTGCACATAATTTATAGATATTAACTAATGTCTAATAGATACTGATAATAATATAATATGGAAATTAGGATATATCTTTTTACTTGCGTGTTCAAACACACTCCAATTTCGCTCACATCCGGATGAGCTACAAGTTAGGCTTAGGGCCTGTTTGGATTGACTTTTTGCTTATGACTATAAGCCAAAAGCCATAAGTTAGGATTTCTAACTTATGACTTTTGGCTTATTTTTGTTATTTTGGCTTTAAAATAAGTGCTTAAAAGCTATTTTGGCTTAGAAGCACCTAAAATAAGTCAATCCAAACGGGCACTTAATACTTTCATGGCAAACTTTTGCAATTTGGTGTTTTACTACCAAATAGTGACCACCATTCAACTATAATAAAATGAATTTAAAGGTTAATGAGCATAAATAAGTCAAATAATTGAAGTAAGAGCTAAATCAACTCACTTACCCGATGACCTTATGTCTTTAGCTCTTTTAGCCGGACCACAACCAAATAGTCCATCCGCCATTTTGTACCTAGGAAGCTTAGCGACTAGTAAATCTTGTATTGCTGTATCGGGGATCACCTTCTCAATTACATGCATAATACTCATCCCACAGAGTCTTTAGTAAAGTTCCCTCCTCTTGAGCTTTATAAAACATTCTTGGGTTCAAAACATGGCTTGCAGCATGCAAAGGCCGATGAAGTTGGTCTAACCACCTTGCATCAATAATTTCAAACACTTTCTCATTTTGCTTCTCAACTCCACAAAAACCCCGTGGATTAGTTTCCTTGGCTCTATCCATTGCTTCATAAATATAGCCCATTGGTGGTTTTTCTCCCTATCCACCAAACAAAGCACTTTTGTCAAAGGGCAACAAACTGTAAGTGCTCGAACAACATCATTCCAAATGTGGGCAGAAATAATAAGGTTGACAACTTCTTTCCCCAAAGTTTCTTTTGCAAATTTACTTGAAGTCCATTCAGTTGAGAGGACTGAAATTCTCAAGTTTTTCCTTTGTATGTACATAAACTGACAAAGTTAAGAAGGCCGTTGCAAATCTTGTCTTAGCGGGTTTTACCAAATTTCTTTCCTTGGTGAATTTTCTTATCAATTTTAACAACAATGACCTTTGACTAATGTAAGAATGGATTTTGTTGGCCTTCTTAAAAACAGTTAAAGTAAAATTTTTGTAATTAGTAGCTAATGAGTATTAAGTATTGACTATAAAAAAAGTTAAAGGATAGGAGAGTGATATTACCAGAAGCATATGGATTAACCTGGATGCTGGACTAATGTCACTAAAGAACTAATTTCTCTCATGACGCTAGACTAATGTCATGTTGCTCAAAAGAGATCAGAAATGAAAACTGAATATTTGATGTAGCTAGAAGTCAAAGTAAGGCAACAATGTAAAATTCACTAAAAAGTTTAGAAAACTAAATTTCTCTCTAGCCTCATAGCCTGAAATGTGATCATTTTTAGATATTTGCAATAAATCCAAGCTACGGAAAGTCATCTAATTTTCACATGCTACTGTAGGACATACCTGATATTGTTGGTGACAAGATCTTTGGAATTCAATCTTTTACTGTCCGCTTGGGTCAAGAGAGGGTAAGTATCAAAGTCTGGCTAATGACTTGAGGCATTTGTTCACTCTATTTTATTGTCTCATATACTTGACTATACTTGTTCACTTTTGGCAGGTCTTTTGGATTTGTATTGGTCTACTTGAAATGGCTTATCTTGTTGCCATCGTAGTGGGTGCAGCATCTTCCAACACCTGGAGCAAATATTTTACTGTAATCCACCTTGAACTCTTATAATTGTTTCATAGAGAGATTGTTAATTATAAAAAAACGAGAGCAAGTAAATAGATTGCTAAAGACTAGCTGTTACTTTATCCTCCTCAGACTCCAAGTTTGGGGGGATTACACTAGGTATGTTATTGTTGTTGGATCTCTGCCCTGCATGAGAGTTTTTCTTCTAACTTTTGAGGCTTATATAACACGACTCCATAGAGAAGTGTAAACACAGCCAAATTAGAAGTCTGCTTGCTCATCTATCTGCATTGTTATTTCATAATCAAGGATTTTCAGCTTTGGGGTTCTTAACTTTCAGACAAAGCAAGAGAAGAATGTAATATTAATTTGATTGAAAAGGAAAATATCTCTCATCCTTAGCACATAAATCATATATCTGTAGTGGCTGAAGTCTGTTACCTCATTTTTACTTGAAAAAAGAAACATGGGACAGGCGTGGCAAATAATGACTTCATTGCCAGATCCTCCCAACAGAAAATATAGCCAAATTTCTTCCCTTCTGTTATAAATCATCACCACCATCGCCTTCACCAATATCCTGTAGTGGGCATCTCCCCTTTTTGTGCTCCATCTTGCTGGAGTAGTGTGTTGTAATTAAAGAAGCAGTCTGGACTTTATTATCAAGAAGAATTTAAAAAGGTAAACCTAGTCTTTTCTTTGTCGTTGCTTTTCCTTCCATTTCTTCCTACAGGCTTTTATCGTATCTTGATTCTACTTTGTATCCTACTTTCTTGTTTGTTCTTAGCTCTTTGTCTTAACATCTTCCAGAAGTTGTCGTCTCAATGAGGCAGTGGATTGGGGTATCAGTTCATTTATCCTGTTTTTGTCTGAGATATCAGGCTACATGTTTTTACCAACAATAAGTTAATCAAAATAGGAAAAATTAAGTACCAAATGTTTCCAAGATATTGTTACTGACGCAACGGTGAGTAACCAGTGTATGGTCATTGTGTAATAGGTTAGTCTTTGTTCAACATTTGAGCTTCCAAATGACTTGCACTGACATGTGTACTTATTTTTGCATTTGTCAGATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAGGTAAGATTTCTCCCAGCATTCTGGAAAATGTAACGAAGTCATGGAAAATGACTGCACGTTAGCTCAAAGCAGTGGCGTATTCAGTACGTAAAGCAAGAAAATAAAATCTTTTCTAGCTTTATTGTTGCGCATAAACATATCTTTGGCCTTAAAACTACTGTACCTTTGATTTTCCTGCACTTGCTAGAGTATAATGGAGGTACAAAATGCTAATCTCTTATTGGTACATGCTTATATCATCTGACTTGTACGAATTTTGATTGCACTTATTTAGTCTCTTAGCTTGGTGTTCAAGCATGACCTTTATCTGAAGATCCTTTGGTTGAACTTCATATTTGTTTTTCATTTTTGATATAATAACTATGTTCTTATTAAATATGTTATCTTAAATTGTAACTCTATATTATCTCATGCTGTAAATCGAAAATGATTTGGGTTTAATAACAAGTGTCTTTACGGCTTTTTTCTGACATAATACCCGCACTTAGTTCTTTGGACTAACGTTAGGGCAAGTAGATTAAAACCATAGAGCAACATGATGTCGAGAGAATTTTACAGCATTAGATATTGACCAGCCTTAGTTCTCAATCTCAAGAACAAACCTAGGTAATAACTTTCTCTCCAAGACTCGACTTAGATTTTCCCCCACAGGAAACATTGTTTTTATAAGCTTACACAAAAGTGGAGTAATATGTATAGAAGCTGAAGGGGTGAAACTCGCAATTTATAGTCTCAAAAGTAATCATACTGTAGCATCAATAATGCCTATTTTACACTACAATAGTGAAGAATACTTTGGCAATATCACTACAAGGTTAAGCTTGAATCTGTTGCTAGAGTTTTGTACAAAATGTACCTTAGTTTCTTTCTTTAATTAGCTTGAACCTTGCATATACAGTTCATCTTTTTAGGACTCGTTTCGATCAATTTAACCTTTTTCATTATTGTTGCTGGCAGCTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAAT</genome_strand>
        <mrna_strand>TGCAATGTGCATCTTTGCTGTACGAGCGGTGATAGTTCAGATAGCTTTTTATTTGCATATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGTATATAAAAGAGCAGCTGTCCTTTCAAGACCTTTAATATTTGCAACAGCATTTATGAGTTTTTTCTCAGTTGTTATAGCATTATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATACCTGATATTGTTGGTGACAAGATCTTTGGAATTCAATCTTTTACTGTCCGCTTGGGTCAAGAGAGG............................................................................................GTCTTTTGGATTTGTATTGGTCTACTTGAAATGGCTTATCTTGTTGCCATCGTAGTGGGTGCAGCATCTTCCAACACCTGGAGCAAATATTTTACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619127" ref_strand="+" ref_description="SGN-E619127 [69813]">
      <seq>ctgaagtttaatttcaggtagttcaaagtagagtagagttcaagtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcagtattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgttgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaacatttacatagttggtttaaatcagttgtctgatatcgaaatagacaaggtaaacaagccatatcttccattggcatcaggggaatactctgtacaaactggagtgattgtgtgtcatcttttgccattttggtaatataataatcttccctttaagcactagaaatgttcgtctcaagctgcgaatgcattccgtctcttatattgcagttgtcatatatgtggtaagcattatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59372" stop="54502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59072" g_stop="58934" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="427" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="586" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55928" i_stop="54993" i_length="936">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54992" g_stop="54802" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="775" r_length="189" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E619127" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59072" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55929"/>
          <exon e_start="54992" e_stop="54802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTC-AGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAGGTATTTTTCTATTTACTTAACATGGATCTGATTTCTGAATGCAGAACTATGCATGCTTCACTTTATCTGTGTGAAGGCCTTGTCGAGGACTCATCTTTCATGTTTTGTTCCGTCGTTTTATCTTTGGGGCTAGAGAGCGAGCAGACATGGGTGGGGTACGGTTCCGCTGAATGTCTTCTGGTCGGGATAGGTGGGTGACTCTTGTGTGTTTGAGAGGGGGGGGGGGGGCGTATGTGCAAGTACATGTTTATAGTAATTGTAAATCCTGGATTTGCCTTTGGGAACTCGGGGACACATTAGAAGCTTTTAGAACTCTCAAAGTACAGCTCTTTTACTCAATGTTTATGAAGATACTTGAGTATCTGGATTGTCAATCAGTACACATAACATATACACTAAGTCTATAATTTTACGCAACTGAAGCTGAAATAGTATCATGTTTCATTGACATCTGATGGGGTGGATGGGAGCTAGTTTTAGTCTTTTGATTCTTTGCTTCTTGCACCCACGGTAAGCTAATCCTCTTTTGTTGTTCCCCACCAGCCTCTAATCCCTAGGTTGCAGATTTAAGATCACTTTGGGTGGTGAGGTAACTCATGTGGGAAAACGACTAAGGTCTACCCCTCTATCACCTGCATCTCAAAATTTTTTCTCCTACTATATTCATCATGAATCGAAACTAAGTTGGTATAAACTATCTGATAAAAGCTTTACAGCATTTTTCCCTTAACCATTAGGGAATTGACCAATTCATTGTAATCCTGATGTACTACAAAATCTTTCCTGATCTGTCTGGGGAGTGGGGCTATAGCAATTAGGGTTCTTCTTTCAGAGGAAAAGTTCTTGGGAGTATATTTAGTTTTTCTTAGTTGATAAAATACTTTTCAGCAGTTTTTTCTACTTTGGCATCTGAAGTATTGAGATGTTTCTTTTCAGGTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCATTTTGGTAATATAAAACCCTTCCCTTTAAGCACTA-AAATCTTCGTCTCAAGCTGTGAATGCATTCCATCTCTTATATTGCAGTTGTTCATATACGTGGTAAACATTTATCTT</genome_strand>
        <mrna_strand>CTGAAGTTTAATTTCAGGTAGTTCAAAGTAGAGTAGAGTTCAAGTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCAGTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGTTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAATCAGTTGTCTGATATCGAAATAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTG-TGTGTCATCTTTTGCCATTTTGGTAATATAATAATCTTCCCTTTAAGCACTAGAAATGTTCGTCTCAAGCTGCGAATGCATTCCGTCTCTTATATTGCAGTTG-TCATATATGTGGTAAGCA-TTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486705" ref_strand="+" ref_description="SGN-E486705 [cSTE-23-A19]">
      <seq>cccatgttctgaagtttactttcaggtagttcaaagtagagttcaggtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccattcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaaacactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgctgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaaattatctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaacatttacatagttggtttaaaccagttgtctgatatcgaaatagacaaggtaaacaagccatatcttccattggcatcaggggaatactctgtacaaactggagtgattgttgtgtcatcttttgccattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59346" stop="54609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59080" g_stop="58934" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="430" r_length="287" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="514" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="589" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55928" i_stop="54993" i_length="936">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54992" g_stop="54909" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="673" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E486705" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59080" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55929"/>
          <exon e_start="54992" e_stop="54909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAGGTATTTTTCTATTTACTTAACATGGATCTGATTTCTGAATGCAGAACTATGCATGCTTCACTTTATCTGTGTGAAGGCCTTGTCGAGGACTCATCTTTCATGTTTTGTTCCGTCGTTTTATCTTTGGGGCTAGAGAGCGAGCAGACATGGGTGGGGTACGGTTCCGCTGAATGTCTTCTGGTCGGGATAGGTGGGTGACTCTTGTGTGTTTGAGAGGGGGGGGGGGGGCGTATGTGCAAGTACATGTTTATAGTAATTGTAAATCCTGGATTTGCCTTTGGGAACTCGGGGACACATTAGAAGCTTTTAGAACTCTCAAAGTACAGCTCTTTTACTCAATGTTTATGAAGATACTTGAGTATCTGGATTGTCAATCAGTACACATAACATATACACTAAGTCTATAATTTTACGCAACTGAAGCTGAAATAGTATCATGTTTCATTGACATCTGATGGGGTGGATGGGAGCTAGTTTTAGTCTTTTGATTCTTTGCTTCTTGCACCCACGGTAAGCTAATCCTCTTTTGTTGTTCCCCACCAGCCTCTAATCCCTAGGTTGCAGATTTAAGATCACTTTGGGTGGTGAGGTAACTCATGTGGGAAAACGACTAAGGTCTACCCCTCTATCACCTGCATCTCAAAATTTTTTCTCCTACTATATTCATCATGAATCGAAACTAAGTTGGTATAAACTATCTGATAAAAGCTTTACAGCATTTTTCCCTTAACCATTAGGGAATTGACCAATTCATTGTAATCCTGATGTACTACAAAATCTTTCCTGATCTGTCTGGGGAGTGGGGCTATAGCAATTAGGGTTCTTCTTTCAGAGGAAAAGTTCTTGGGAGTATATTTAGTTTTTCTTAGTTGATAAAATACTTTTCAGCAGTTTTTTCTACTTTGGCATCTGAAGTATTGAGATGTTTCTTTTCAGGTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCATTTTG</genome_strand>
        <mrna_strand>CCCATGTTCTGAAGTTTACTTTCAGGTAGTTCAAAGTAGAGTTCAG----GTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCATTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAACACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGCTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAATTATCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGATATCGAAATAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCATCTTTTGCCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241065" ref_strand="+" ref_description="SGN-E241065 [cLED-26-K19]">
      <seq>tcaattccagttcctgctgagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattcctcttcaatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggagatttttggtgcacgcatcatctgaacaccctcttgaatctcaaccttctaaaagtccttgggactcagttaatgatgccgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaacatttacatagttggtttaaaccagttgtctgacatcgaaatagacaaggtaaacaagccatatcttccattggcatcaggggaatactctgtacaaactggagtgattgttgtgtcgtcttttgccattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59273" stop="54609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58973" g_stop="58934" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="327" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="411" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55928" i_stop="54993" i_length="936">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54992" g_stop="54909" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="570" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E241065" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58973" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55929"/>
          <exon e_start="54992" e_stop="54909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAGGTATTTTTCTATTTACTTAACATGGATCTGATTTCTGAATGCAGAACTATGCATGCTTCACTTTATCTGTGTGAAGGCCTTGTCGAGGACTCATCTTTCATGTTTTGTTCCGTCGTTTTATCTTTGGGGCTAGAGAGCGAGCAGACATGGGTGGGGTACGGTTCCGCTGAATGTCTTCTGGTCGGGATAGGTGGGTGACTCTTGTGTGTTTGAGAGGGGGGGGGGGGGCGTATGTGCAAGTACATGTTTATAGTAATTGTAAATCCTGGATTTGCCTTTGGGAACTCGGGGACACATTAGAAGCTTTTAGAACTCTCAAAGTACAGCTCTTTTACTCAATGTTTATGAAGATACTTGAGTATCTGGATTGTCAATCAGTACACATAACATATACACTAAGTCTATAATTTTACGCAACTGAAGCTGAAATAGTATCATGTTTCATTGACATCTGATGGGGTGGATGGGAGCTAGTTTTAGTCTTTTGATTCTTTGCTTCTTGCACCCACGGTAAGCTAATCCTCTTTTGTTGTTCCCCACCAGCCTCTAATCCCTAGGTTGCAGATTTAAGATCACTTTGGGTGGTGAGGTAACTCATGTGGGAAAACGACTAAGGTCTACCCCTCTATCACCTGCATCTCAAAATTTTTTCTCCTACTATATTCATCATGAATCGAAACTAAGTTGGTATAAACTATCTGATAAAAGCTTTACAGCATTTTTCCCTTAACCATTAGGGAATTGACCAATTCATTGTAATCCTGATGTACTACAAAATCTTTCCTGATCTGTCTGGGGAGTGGGGCTATAGCAATTAGGGTTCTTCTTTCAGAGGAAAAGTTCTTGGGAGTATATTTAGTTTTTCTTAGTTGATAAAATACTTTTCAGCAGTTTTTTCTACTTTGGCATCTGAAGTATTGAGATGTTTCTTTTCAGGTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCATTTTG</genome_strand>
        <mrna_strand>TCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464913" ref_strand="+" ref_description="SGN-E464913 [cPRO-19-B19]">
      <seq>aaatagcagtatcccatgttctgaagtttaatttcaggtagttcaaagtagagtagagttcaagtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcagtattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgttgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaacatttacatagttggtttaaatcagttgtctgatatcgaaatagacaaggtaaacaagccatatctttcattggcatcaggggaatactctgtacaaactggagtgattgttgtgtcatcttttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59392" stop="54614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59092" g_stop="58934" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="447" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="531" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="606" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55928" i_stop="54993" i_length="936">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54992" g_stop="54914" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="685" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E464913" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59092" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55929"/>
          <exon e_start="54992" e_stop="54914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCAGTATCCCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTC-AGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAGGTATTTTTCTATTTACTTAACATGGATCTGATTTCTGAATGCAGAACTATGCATGCTTCACTTTATCTGTGTGAAGGCCTTGTCGAGGACTCATCTTTCATGTTTTGTTCCGTCGTTTTATCTTTGGGGCTAGAGAGCGAGCAGACATGGGTGGGGTACGGTTCCGCTGAATGTCTTCTGGTCGGGATAGGTGGGTGACTCTTGTGTGTTTGAGAGGGGGGGGGGGGGCGTATGTGCAAGTACATGTTTATAGTAATTGTAAATCCTGGATTTGCCTTTGGGAACTCGGGGACACATTAGAAGCTTTTAGAACTCTCAAAGTACAGCTCTTTTACTCAATGTTTATGAAGATACTTGAGTATCTGGATTGTCAATCAGTACACATAACATATACACTAAGTCTATAATTTTACGCAACTGAAGCTGAAATAGTATCATGTTTCATTGACATCTGATGGGGTGGATGGGAGCTAGTTTTAGTCTTTTGATTCTTTGCTTCTTGCACCCACGGTAAGCTAATCCTCTTTTGTTGTTCCCCACCAGCCTCTAATCCCTAGGTTGCAGATTTAAGATCACTTTGGGTGGTGAGGTAACTCATGTGGGAAAACGACTAAGGTCTACCCCTCTATCACCTGCATCTCAAAATTTTTTCTCCTACTATATTCATCATGAATCGAAACTAAGTTGGTATAAACTATCTGATAAAAGCTTTACAGCATTTTTCCCTTAACCATTAGGGAATTGACCAATTCATTGTAATCCTGATGTACTACAAAATCTTTCCTGATCTGTCTGGGGAGTGGGGCTATAGCAATTAGGGTTCTTCTTTCAGAGGAAAAGTTCTTGGGAGTATATTTAGTTTTTCTTAGTTGATAAAATACTTTTCAGCAGTTTTTTCTACTTTGGCATCTGAAGTATTGAGATGTTTCTTTTCAGGTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCA</genome_strand>
        <mrna_strand>AAATAGCAGTATCCCATGTTCTGAAGTTTAATTTCAGGTAGTTCAAAGTAGAGTAGAGTTCAAGTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCAGTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGTTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAATCAGTTGTCTGATATCGAAATAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAGCCATATCTTTCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCATCTTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482963" ref_strand="+" ref_description="SGN-E482963 [cSTE-6-O5]">
      <seq>ctgaagtttaatttcaggtagttcaaagtagagtagagttcaggtgctgatttagaaataaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaaacactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgctgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactgggggtgttagaggccattgttgctgccctattcatgaacatttacatagtttgtttaaaccagttgtctgatatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59372" stop="55638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59072" g_stop="58934" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="427" r_length="287" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="512" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55938" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="578" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E482963" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59072" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCA-GTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACT-GGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAA</genome_strand>
        <mrna_strand>CTGAAGTTTAATTTCAGGTAGTTCAAAGTAGAGTAGAGTTCAGGTGCTGATTTAGAAATAAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAACACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGCTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTTGTTTAAACCAGTTGTCTGATATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312055" ref_strand="+" ref_description="SGN-E312055 [cTOA-11-K1]">
      <seq>ccatgttctgaagcttaatttcaggtagttcaaagtagagtggagttcagtgctgatttaaaaatcaaaaatggaatctttgcttattgggtcctttcatagaccatcaattccagttcctgctgagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattcctcttcaatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggagatttttggtgcacgcatcatctgaacaccctcttgaatctcaaccttctaaaagtccttgggactcagttaatgatgccgtagatgctttctacaggttctcgcggccccataccataataggaacaggcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaacatttacatagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59379" stop="55664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59079" g_stop="58934" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57093" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="434" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57092" i_stop="56169" i_length="924">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="518" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55964" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="558" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E312055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59079" e_stop="58934"/>
          <exon e_start="57380" e_stop="57093"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTG</genome_strand>
        <mrna_strand>CCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362534" ref_strand="+" ref_description="SGN-E362534 [cLPP-1-M3]">
      <seq>aggtagttcaaagtagagtagagttcaggtgctgatttagaaataaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattccacttctatgaagttgcagcggcagtatatcacacaagagcatgttggaggaagtgatctaaacactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgctgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggggtgttagaggccattgttgctgccctattcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59357" stop="55678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59057" g_stop="58934" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="412" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56085" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="496" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56003" g_stop="55978" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="522" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E362534" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59057" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56085"/>
          <exon e_start="56003" e_stop="55978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAGTTCAAAGTAGAGTGGAGTTCA-GTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAGGTGGGTAAAGAACATTCTTAGATTCAACTTAAGATGTGATCTGCGACGACAAGATTTTTGATTATCACTATATTTTTGCAGGCCATTGTTGCTGCCCTATTCATGAA</genome_strand>
        <mrna_strand>AGGTAGTTCAAAGTAGAGTAGAGTTCAGGTGCTGATTTAGAAATAAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACACAAGAGCATGTTGGAGGAAGTGATCTAAACACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGCTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG.................................................................................GCCATTGTTGCTGCCCTATTCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464765" ref_strand="+" ref_description="SGN-E464765 [cPRO-19-C19]">
      <seq>aaatagcagtatcccatgttctgaagtttaatttcaggtagttcaaagtagagtagagttcaagtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcagtattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgttgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59392" stop="55794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59092" g_stop="58934" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="447" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56094" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="522" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E464765" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59092" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGCAGTATCCCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTC-AGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGG</genome_strand>
        <mrna_strand>AAATAGCAGTATCCCATGTTCTGAAGTTTAATTTCAGGTAGTTCAAAGTAGAGTAGAGTTCAAGTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCAGTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGTTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469159" ref_strand="+" ref_description="SGN-E469159 [cSTB-10-L21]">
      <seq>caagtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcagtattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggactcagtgcatgatgttgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagttgagaagttctctgatttttctccattatttttcactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59331" stop="55794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59033" g_stop="58934" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="387" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56094" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="462" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E469159" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59033" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGG</genome_strand>
        <mrna_strand>CAAGTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCAGTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTCAGTGCATGATGTTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456819" ref_strand="+" ref_description="SGN-E456819 [cSTS-30-L1]">
      <seq>acaggacaaaattttcctattttggtttcagtgttttcttctaaatatgacaaaaattgaaatgagaaatagcagtatcccatgttctgaagtttaacttcaggtagttcaaagtatagcagagttcaggtgctgatttagaaatcaaaaatggaatctttgcttattgggtcttttcatagaccatcaattccagttgctgcagagttttctccactcaaaaccagttcacatgcaatagtacgggttttgaaatgtaaagcatggaagagaccaaaaaagcactattccacttctatgaagttgcagcggcagtatatcacgcaagagcatgttggaggaagtgatctaagcactattgctgctgataaaaaacttaaagggaggtttctggtgcatgcatcatctgaacaccctctcgaatctcaaccttctaagagtccttgggacttggtgcatgatgctgtagatgctttctacaggttctcgcggccccataccataataggaacagcattgagcataatttcagtttctctccttgcagntgagaagttctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="59456" stop="55819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59160" g_stop="58934" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57380" g_stop="57094" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="513" r_length="287" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56168" g_stop="56119" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="563" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E456819" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59160" e_stop="58934"/>
          <exon e_start="57380" e_stop="57094"/>
          <exon e_start="56168" e_stop="56119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGACAAAAATTTTCTATTTTGGTTTTAGTGTATTCTTTTAAAAATATGCCAAAAATTGAAATGAGAAATAGCAGTATCCCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCA-GTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCAGTATGTGAAGTTGTACATTTTTGCTTTTTCTATGTGTGTTCTTGAATTCGTGGGATTTTTTTTAAGTATTTCAGTTTGCATGATGTAGTTTTCTTGTGTATTTTGCTTGTTAATTGGAAAAGTTACTTCAATCTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTACTTGAAGTTCTAGTTCCACATTGGGTAATGTTGAGTTCATTTCTAAGTTCTGGAGTCTAGTAGTTGAAGTTCTAGTTCTGCATTGGGTGTTCAAAAATCTTATACCCTTTAGTTTGTTGATGATTTTGTCGGATTGATCTGTATTTTGCCCCAAGCGTGTAAAACTTGAATCTTTTTCCTGGGTCAACAGATAATTGATTTATCTATGTATCCGTTGTCATTTCTGTGAAAGGAACTGCTATTTGTGGGTTCTCAAAATGGCAGGAATTTTTTAGTGTTGTAGCTTTGGATGGTATGATTTTCTTGTAATGTCAACATAAATGTTCAAGCCCCTGGAGTTTGTTCTAGTGGTAAGAGTGCAGAGTATGATGTGTGGATTAGGCGTTCATCATCATGGGTTTGAACCTTACTGCAAACACAACCCTGGTAGTTAAGTGGAAAAGGCAAAAGCATAGAGCGGCGGACCCATTATCTCCAAGTTGCTGACGTGCACCATTGACTCTAAGATATTCTTGGTTATTGTTGAAGAGTCTCACATCGGATGAAAAAGGGATGTGTTGTCTCCTTTTTATGGTCTTTGGGCAATTCTCTCCTTATGAGCTAACTTTTTGGTTTCTATGTGCTTGAGTCACATCCCCGGAAGTTCTTAATTTCACAGTAAATGTTAACAGTTCTATCCTGTTTGGTTTTCTTGGTGAATCCTTATGATCCACAAAACATGTTCTTTTCTGGTGGTACGTTAATCGCCATATTCTTTATTCTTATGTTTCACTGTGTGAGTTCAGGCATTTTGCTTTTAGAAGTCCAACCTGTTCTGTTGTTTGCCTATTTTCACGAGTAAATAGTGTGCTAAATCTTTTTCTAATGTGAAACTTCTTGCTGCTGAACTTAGCTACGTTTCATTATAAATTTTAGATTTTCCGACTTAGTTCCTGTTTCGAGAACAATTTTAATGCTCATCTGTCAGCTCCCTCTGGCTGGGTATATGCAGTGAGTACTAGAAAAGTTTGCTTTCTTGATCATGTTTTGGTGCTGGTTGAAATTCAAGAGATCGTGTTACAGACTTTGAGATTATGGATGACCAAAGTAGTGGAGAGAAGGAGCAGAAGCTCTGGCTGACATGTTGATATATGGTGTTTCCTTTTTGAAAGGACCAAGCAATGATGATAATGGTTGTTCAAATGATACTGCAAAAAGGACTTGTGCTTTTAGATGTTGCAATGTGCTTTTGTGTATTAAATTTCCAGTATACACTCTTTACTTACCATTTGAAGAAGCTATAATCTGTAAAGTATAAAATTGCTGTAATTTATATGTGGTACCAATTGGAGATTAAATATGATTATCTTCATGACCTGAATTATGTTTACATGCCTCTGACATCATAAGTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAGTTAGGTCCACAACTCCTACATTGAGCAACATAAGATCTGCAGGGTCCCAAATGAATTGGCTTCATGCCTATGGCTTATTTGTTTCCATGTTATATGAGTTGCCATAGGATTTGGTTCTGACCCACCATTCATTTGTGTTTATTTATGTCATCATAATTCTTGTCAGATTTTAGTTTGTGTAGCTTGTAATGCCTTACCAAGAAATGAGTATATTATTAGTGCATCTGCTTTCAATTTAATTAGATATAGCTAGAGTAATAGGTTTTTTGATCGAGAGGGTGCTAAAAGATGTTAATTTCGTAGAATCAGCTTGATGGATAAAGCTCAGAAATTTCATGTGTTAGTACACAACAACATTTTCAGCTTACAGAGAACATGACCTTAGATAGGAGGGTATGGAGATCATGTATAAGGGTAGAAGGTTAGTAGGTAGTTCTGAGTTGTCCTATTAGTAGCCTATTCATGTATTTGGTTTGATAATAGTATAGAGCACCGTGTCGGCTGTAGTATTAGCCTATTCATCTAGTCTTTGACTTTTGGTATATGATATCATCTGTGGTTTACTCTGTTTAGGTGATTGCACCTTCTTGTTGTTGTTTATGGTTTCCTTGCATATATGCTCCACAGTCCACACCGCTTTGATATTACTTGTCATGTTTCTCCCCACCATCATTTTTTTCCCATTTAATTACTGCTTTGATTTGCTTGAGCCAAGGGTCTTGTGGAAACAGCCTCTCTACCTCAAAGAGGTAATGGTAAGGCCTGTGTATGCGACTATGCTCTACTCTTTCCAGACCCCACTTTGTGTGATGCACAGTGTATGTTTTTGTTGTTGTATGCATGTATACATTATATATTTATTTTTGAATTTTGATAGATTGGAAGTACAAGAACAGTAAACTTACATTACTTTTCTTTGAGCAGGCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGA</genome_strand>
        <mrna_strand>ACAGGACAAAATTTTCCTATTTTGGTTTCAGTGTTTTCTTCT--AAATATGACAAAAATTGAAATGAGAAATAGCAGTATCCCATGTTCTGAAGTTTAACTTCAGGTAGTTCAAAGTATAGCAGAGTTCAGGTGCTGATTTAGAAATCAAAAATGGAATCTTTGCTTATTGGGTCTTTTCATAGACCATCAATTCCAGTTGCTGCAGAGTTTTCTCCACTCAAAACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATGCAATAGTACGGGTTTTGAAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCACTTCTATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGGTTTCTGGTGCATGCATCATCTGAACACCCTCTCGAATCTCAACCTTCTAAGAGTCCTTGGGACTTGGTGCATGATGCTGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGNTGAGAAGTTCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="77508" stop="74983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77208" g_stop="76987" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76986" i_stop="75651" i_length="1336">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75650" g_stop="75284" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="589" r_length="366" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77208" e_stop="76987"/>
          <exon e_start="75650" e_stop="75284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGATTTGTTATTCCGGGAGATTTTCTCTAATTTTTTAGCGATCTCAGCATAAGGGCATTATCCATAGGATCCACCTGCTACAGTGTCCAACACCGCTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATACGGTGATTT-GAACACTTCTCAAGAATGATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGGGCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACGGAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCCGCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGACACGCAGTCTCTCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTCTGCCTGTATGTGCCCGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAGCAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAGACATTTCTTAATTGGTTCCAAGTGAAGATTAAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTATCCCGTCAGTAAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTACATTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTAAAAACAAACCTCTGTCAGTGAGCATTTGCATCACGCTACTAGTCACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="81731" stop="80416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81431" g_stop="80716" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81431" e_stop="80716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATCTTAGTACTAGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGAAGGACCCTCATAGCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTACACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCGGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAAGGCTTTTGGACACACTAAACTTAAGGGAAAAGTATTAATAATACCGTGAAACCATGGTATATCAATACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTAGACAATCTTTGTACAATAGTATCTATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCGCTATTAGGCTTGAATTTTGTGGGATCAGAACATGACACAGACTCACCACGCACTAACACCTATCCTCTTCAATTTTTCACCGGGGTACTAGCAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCACTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="-" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="81723" stop="80742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81423" g_stop="81050" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81423" e_stop="81050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTCCAAAACACTTCAACTCTTGGAATCTTAGTACTAGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGAAGGACCCTCATAGCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTACACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCGGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAAGGCTTTTGGACACACTAAACTTAAGGGAAAAGTATTAATAATACCGTGAAACCATG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739711" ref_strand="+" ref_description="SGN-E739711 [LC18CC07]">
      <seq>cctataatgggattggaagtaattgaaatgagtgtgtgggtgtggtagaatccgctatctctcactatagctttgccccgttcttttctctctatcattctatctatcatcaaaaatgccgaattgagagtcttgtgccactccaatattatcttcagccatggaaggttctctcttccctaatagaccaatcttgccaatccaatcaacaaaaccaacacctttaccaccaacccatcgcctcaaattgaatctcaccaccaccacttcccctctcccacctctcaaacaacagcagcaactaaccccttcttcttctacttctacttctttccctcttgattctcttctccaacatcctcttcatgtttcatcttcaaatcctccaagaactgttaaatcttcaagaattagcaatacccatttgtctactcttcatgtttctttggaaaatgatgactccctttttgggaatacgagggttactgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="88466" stop="89554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88764" g_stop="89254" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E739711" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88764" e_stop="89254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAGTTGGATTGGAAGTAATTGAAATGAGTGTGTGGGTGTGGTAGAATCCGCTATCTCTCAGTATAGCTTTGCCCCGTTCTTTTCTCTCAATCATTCTATCTATCATCAAAAATGCCGAATTGAGAGTCTTGTGCCACTCCAATATTATCTTCAGCCATGGAAGGTTCTCTCTTCCCTAATAGACCAATCTTGCCAATCCAATCAACAAAACCAACACCTTTACCACCAACCCAGCGCCTCAAATTGAATCCCACCACCACCACTTCCCCTCTCCCACCTCTCAAACAACAGCAGCAACAAACCCCTTCTTCTTCTACTTCTACTTCTTTCCCTCTTGATTCTCTTCTCCAACATCTTCTTCATGTTTCATCTTCAAATCCTCCAAGAACTGTTAAATCTTCAAGAATTAGCAATACCCATTTGTCTACTCTTCCTGTTTCTTTGGAAAATGATGACACCCTTTTTGGGAATACGAGGGTTACTGTTC</genome_strand>
        <mrna_strand>CCTATAATGGGATTGGAAGTAATTGAAATGAGTGTGTGGGTGTGGTAGAATCCGCTATCTCTCACTATAGCTTTGCCCCGTTCTTTTCTCTCTATCATTCTATCTATCATCAAAAATGCCGAATTGAGAGTCTTGTGCCACTCCAATATTATCTTCAGCCATGGAAGGTTCTCTCTTCCCTAATAGACCAATCTTGCCAATCCAATCAACAAAACCAACACCTTTACCACCAACCCATCGCCTCAAATTGAATCTCACCACCACCACTTCCCCTCTCCCACCTCTCAAACAACAGCAGCAACTAACCCCTTCTTCTTCTACTTCTACTTCTTTCCCTCTTGATTCTCTTCTCCAACATCCTCTTCATGTTTCATCTTCAAATCCTCCAAGAACTGTTAAATCTTCAAGAATTAGCAATACCCATTTGTCTACTCTTCATGTTTCTTTGGAAAATGATGACTCCCTTTTTGGGAATACGAGGGTTACTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736086" ref_strand="+" ref_description="SGN-E736086 [LC04BB10]">
      <seq>aattgaaatgagtgtgtgggtgtggtagaatccgctatctctcagtatagctttgccccgttcttttctctcaatcattctatctatcatcaaaaatgccgaattgagagtcttgtgccactccaatattatcttcagccatggaaggttctctcttccctaatagaccaatcttgccaatccaatcaacaaaaccaacacctttaccaccaacccagcgcctcaaattgaatcccaccaccaccacttcccctctcccacctctcaaacaacagcagcaacaaaccccttcttcttctacttctacttctttccctcttgattctcttctccaacatcttcttcatgtttcatcttcaaatcctccaagaactgttaaatcttcaagaattagcaatacccatttgtctactcttcctgtttctttggaaaatgatgacaccctttttgggaatacgagggttactgttcccaaaatggaatcttttgatgatgggtcacttgaatttctccctcttaactgtaagttaatgattgattcaattcttgaacgccctctttctcatatgactgaattctttgattctgtgaaacttgagttgcttgaagttgatttgatgagtcttttgaaaggcttagatgttttaggcaaatgggatagagctattttgttgtttgaatgggctgttttgaacattcatgttgaaaatgaaaagctagatagtcaagttattgaatttatggtgagggttttgggtagggaatcacagcatttggtgacgtcgaaactgtttgatgttattccattcgaagattactctcttgatgtccgagcgtggacaactgttctacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="88484" stop="89940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88784" g_stop="89640" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E736086" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88784" e_stop="89640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAATGAGTGTGTGGGTGTGGTAGAATCCGCTATCTCTCAGTATAGCTTTGCCCCGTTCTTTTCTCTCAATCATTCTATCTATCATCAAAAATGCCGAATTGAGAGTCTTGTGCCACTCCAATATTATCTTCAGCCATGGAAGGTTCTCTCTTCCCTAATAGACCAATCTTGCCAATCCAATCAACAAAACCAACACCTTTACCACCAACCCAGCGCCTCAAATTGAATCCCACCACCACCACTTCCCCTCTCCCACCTCTCAAACAACAGCAGCAACAAACCCCTTCTTCTTCTACTTCTACTTCTTTCCCTCTTGATTCTCTTCTCCAACATCTTCTTCATGTTTCATCTTCAAATCCTCCAAGAACTGTTAAATCTTCAAGAATTAGCAATACCCATTTGTCTACTCTTCCTGTTTCTTTGGAAAATGATGACACCCTTTTTGGGAATACGAGGGTTACTGTTCCCAAAATGGAATCTTTTGATGATGGGTCACTTGAATTTCTCCCTCTTAACTGTAAGTTAATGATTGATTCAATTCTTGAACGCCCTCTTTCTCATATGACTGAATTCTTTGATTCTGTGAAACTTGAGTTGCTTGAAGTTGATTTGATGAGTCTTTTGAAAGGCTTAGATGTTTTAGGCAAATGGGATAGAGCTATTTTGTTGTTTGAATGGGCTGTTTTGAACATTCATGTTGAAAATGAAAAGCTAGATAGTCAAGTTATTGAATTTATGGTGAAGGTTTTGGGTAGGGAATCACAGCATTTGGTGACGTCGAAACTGTTTGATGTTATTCCATTCGAAGATTACTCTCTTGATGTCCGAGCGTGGACAACTGTTCTACATGCT</genome_strand>
        <mrna_strand>AATTGAAATGAGTGTGTGGGTGTGGTAGAATCCGCTATCTCTCAGTATAGCTTTGCCCCGTTCTTTTCTCTCAATCATTCTATCTATCATCAAAAATGCCGAATTGAGAGTCTTGTGCCACTCCAATATTATCTTCAGCCATGGAAGGTTCTCTCTTCCCTAATAGACCAATCTTGCCAATCCAATCAACAAAACCAACACCTTTACCACCAACCCAGCGCCTCAAATTGAATCCCACCACCACCACTTCCCCTCTCCCACCTCTCAAACAACAGCAGCAACAAACCCCTTCTTCTTCTACTTCTACTTCTTTCCCTCTTGATTCTCTTCTCCAACATCTTCTTCATGTTTCATCTTCAAATCCTCCAAGAACTGTTAAATCTTCAAGAATTAGCAATACCCATTTGTCTACTCTTCCTGTTTCTTTGGAAAATGATGACACCCTTTTTGGGAATACGAGGGTTACTGTTCCCAAAATGGAATCTTTTGATGATGGGTCACTTGAATTTCTCCCTCTTAACTGTAAGTTAATGATTGATTCAATTCTTGAACGCCCTCTTTCTCATATGACTGAATTCTTTGATTCTGTGAAACTTGAGTTGCTTGAAGTTGATTTGATGAGTCTTTTGAAAGGCTTAGATGTTTTAGGCAAATGGGATAGAGCTATTTTGTTGTTTGAATGGGCTGTTTTGAACATTCATGTTGAAAATGAAAAGCTAGATAGTCAAGTTATTGAATTTATGGTGAGGGTTTTGGGTAGGGAATCACAGCATTTGGTGACGTCGAAACTGTTTGATGTTATTCCATTCGAAGATTACTCTCTTGATGTCCGAGCGTGGACAACTGTTCTACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438593" ref_strand="+" ref_description="SGN-E438593 [cSTA-8-F18]">
      <seq>gtagggaatcacagcatttggtgacgtcaaaactgtttgatgttattccatttgaagattactcacttgatgttcgagccttggacaactgttctacatgcttattctcggattggcaagtatgacaaggcaattgcattgtttgaatatgtgaaagagaagggtttatctgccaccttggtaacttataatgttatgttagatgtttatggtaaaaagggtaggtcttggaacaatattttactgcttttagatgaaatgacaagtaacgggcttgaatttgacgagttcacttgtagcacggttatagctgcttgtgggagggaagggttgttggaggaagcaaaagagttttttgatggattgaagagaaagggttatgttccgggaacagttacttacaattctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="89240" stop="90251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89540" g_stop="89951" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E438593" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89540" e_stop="89951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGGAATCACAGCATTTGGTGACGTCGAAACTGTTTGATGTTATTCCATTCGAAGATTACTCTCTTGATGTCCGAG-CGTGGACAACTGTTCTACATGCTTATTCTAGGATTGGCAAGTATGACAAGGCAATTGCATTGTTTGAATATGTGAAAGAGAAGGGTTTATCTGTCACTTTGGTAACTTATAATGTTATGTTAGATGTTTATGGTAAAAAGGGTAGGTCTTGGAACAATATTTTACTGCTTTTAGATGAAATGACAAGTAACGGGCTTGAATTTGACGAGTTCACTTGTAGCACGGTTATTGCTGCTTGTGGAAGGGAAGGGTTGTTGGAGGAAGCGAAAGAGTTTTTTGATGTATTGAAGAGAAAGGGTTATGTTCCGGGAACAGTTACTTACAATTCTTTACT</genome_strand>
        <mrna_strand>GTAGGGAATCACAGCATTTGGTGACGTCAAAACTGTTTGATGTTATTCCATTTGAAGATTACTCACTTGATGTTCGAGCCTTGGACAACTGTTCTACATGCTTATTCTCGGATTGGCAAGTATGACAAGGCAATTGCATTGTTTGAATATGTGAAAGAGAAGGGTTTATCTGCCACCTTGGTAACTTATAATGTTATGTTAGATGTTTATGGTAAAAAGGGTAGGTCTTGGAACAATATTTTACTGCTTTTAGATGAAATGACAAGTAACGGGCTTGAATTTGACGAGTTCACTTGTAGCACGGTTATAGCTGCTTGTGGGAGGGAAGGGTTGTTGGAGGAAGCAAAAGAGTTTTTTGATGGATTGAAGAGAAAGGGTTATGTTCCGGGAACAGTTACTTACAATTCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264697" ref_strand="+" ref_description="SGN-E264697 [cLEG-72-E14]">
      <seq>gcaatgtgtggtaatagggngatgcaaaaatatgtaaatcacgttttccatgagatgaaaagctgtggttttgagcctgatagagacacatttaatactttgattcgtgcttatggaaggtgtgattctgattttaatgctgcaaagatgtacgatgagatgatccaatcaggattcactccgtgtgtcacaacatacaatgcgcttcttaatgcccttgctcgtcgaggtgattggagagcagctgaatctgttttctcagacatgaaaagtaagggctttaagcccagtgaaactacttactctatgatgctccactgctattccaagggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90073" stop="91007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90373" g_stop="90707" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E264697" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90373" e_stop="90707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGTGTGGTAATAGGGGAATGCAAAAATATGTAAATCACGTTTTCCATGAGATGAAAAGCTGTGGTTTTGAGCCTGATAGAGACACATTTAATACTTTGATTCGTGCTTATGGAAGGTGTGATTCTGATTTTAATGCTGCAAAGATGTACGATGAGATGATCCAATCAGGATTCACTCCGTGTGTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGG</genome_strand>
        <mrna_strand>GCAATGTGTGGTAATAGGGNGATGCAAAAATATGTAAATCACGTTTTCCATGAGATGAAAAGCTGTGGTTTTGAGCCTGATAGAGACACATTTAATACTTTGATTCGTGCTTATGGAAGGTGTGATTCTGATTTTAATGCTGCAAAGATGTACGATGAGATGATCCAATCAGGATTCACTCCGTGTGTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTATGATGCTCCACTGCTATTCCAAGGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258683" ref_strand="+" ref_description="SGN-E258683 [cLEG-50-H9]">
      <seq>caatgtgtggtaataggggaatgcaaaaatatgtaaatcacgttttccatgagatgaaaagctgtggttttgagcctgatagagacacatttaatactttgattcgtgcttatggaaggtgtgattctgattttaatgctgcaaagatgtacgatgagatgatccaatcaggattcactccgtgtgtcacaacatacaatgcgcttcttaatgcccttgctcgtcgaggtgattggagagcagctgaatctgttttctcagacatgaaaagtaagggctttaagcccagtgaaactacttactctttgatgctccactgctattccaagggagggaacgtgagaagtgtggagagaatcgcaaaggaaatttatgatggtcctatttttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90074" stop="91065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90374" g_stop="90765" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E258683" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90374" e_stop="90765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGTGGTAATAGGGGAATGCAAAAATATGTAAATCACGTTTTCCATGAGATGAAAAGCTGTGGTTTTGAGCCTGATAGAGACACATTTAATACTTTGATTCGTGCTTATGGAAGGTGTGATTCTGATTTTAATGCTGCAAAGATGTACGATGAGATGATCCAATCAGGATTCACTCCGTGTGTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCT</genome_strand>
        <mrna_strand>CAATGTGTGGTAATAGGGGAATGCAAAAATATGTAAATCACGTTTTCCATGAGATGAAAAGCTGTGGTTTTGAGCCTGATAGAGACACATTTAATACTTTGATTCGTGCTTATGGAAGGTGTGATTCTGATTTTAATGCTGCAAAGATGTACGATGAGATGATCCAATCAGGATTCACTCCGTGTGTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAAGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCCTATTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448877" ref_strand="+" ref_description="SGN-E448877 [cSTS-4-P19]">
      <seq>gtcacaacatacaatgcgcttcttaatgcccttgctcgtcgaggtgattggagagcagctgaatctgttttctcagacatgaaaagtaaggggtttaagcccagtgaaactacttactctttgatgctccactgctattccaagggagggaacgtgagaggtgtggagagaatcgcaaaggaaatttatgatggtcatatttttcctagttggatgcttttgagaaccctcattcttgcaaatttcaagtgtagatctctcatgggtatggagagagcatttcaggaattacagaaaaatggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcacgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggacatgtatgctagagccggtgaatgttggaaagctgangaaatccttaatcgactgcagaagaatggaggaaatccagaccttgtatcatataacactgtcatcaaagcgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90259" stop="91418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90559" g_stop="91118" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E448877" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90559" e_stop="91118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTG</genome_strand>
        <mrna_strand>GTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGGTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAATTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCACGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGACATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGANGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAATCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408661" ref_strand="+" ref_description="SGN-E408661 [PPI-11-F18]">
      <seq>tcttaatgcccttgctcgtcgaggtgattggagagcagctgaatctgttttctcagacatgaaaagtaagggctttaagcccagtgaaactacttactctttgatgctccactgctattccaagggagggaacgtgagaggtgtggagagaatcgcaaaggaaatttatgatggtcatatttttcctagttggatgcttttgagaaccctcattcttgcaaatttcaagtgtagatctctcatgggtatggagagagcatttcaggaattacagaaaaatggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcacgaggtgctgcatttaattagggagaatggtcagcagccagatcttgttacatataatagtttaatggacatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaatccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggacgccatacgaattttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatcgctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacgagtgcagaccaaatgagctaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90279" stop="91606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90579" g_stop="91306" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E408661" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90579" e_stop="91306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACA</genome_strand>
        <mrna_strand>TCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAATTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCACGAGGTGCTGCATTTAATTAGGGAGAATGGTCAGCAGCCAGATCTTGTTACATATAATAGTTTAATGGACATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAATCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGACGCCATACGAATTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATCGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACGAGTGCAGACCAAATGAGCTAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735850" ref_strand="+" ref_description="SGN-E735850 [LC03BE08]">
      <seq>cggtagctgaatctgttttctcagacatgaaaagtaagggctttaagcccagtgaaactacttactctttgatgctccactgctattccaagggagggaacgtgagaggtgtggagagaatcgcaaaggaaatttatgatggtcatatttttcctagttggatgcttttgagaaccctcattcttgcaaatttcaagtgtagatctctcatgggtatggagagagcatttcaggaactacagaaaaatggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcatgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggatatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatcttttgcacgatttgctttctcgagtangggaaatatggaatcatgacttantattcccatgggatgtccactctttgataaactgacgtccagttgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90313" stop="91807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90611" g_stop="91507" g_length="897"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="896" r_length="896" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E735850" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90611" e_stop="91507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGC-TTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTA</genome_strand>
        <mrna_strand>CGGTAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTTGCACGATTTGCTTTCTCGAG-TANGGGAAATATGGAATCATGACTTANTATTCCCATGGGATGTCCACTCTTTGATAAACTGACGTCC-AGTTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345141" ref_strand="+" ref_description="SGN-E345141 [cTOF-22-F2]">
      <seq>tggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcatgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggatatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatctttgcaacgatttgcttctcgagttagggaaaatatggaatcatgacttagtaattccatgggatgtccactctttgataaactgacgtccaagttgactaggagagagagacgaagttcctcgacttgttattttgcttctatgaaaatgtagattccattcacatncttagttttaacttgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90558" stop="91894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90858" g_stop="91594" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E345141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90858" e_stop="91594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTTAGTTTAACCTGCTTGG</genome_strand>
        <mrna_strand>TGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAAATGTAGATTCCATTCACATNCTTAGTTTTAACTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276938" ref_strand="+" ref_description="SGN-E276938 [cLEN-22-I22]">
      <seq>cagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcatgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggatatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatctttgcaacgatttgcttctcgagttagggaaaatatggaatcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90569" stop="91753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90869" g_stop="91453" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E276938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90869" e_stop="91453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGAC</genome_strand>
        <mrna_strand>CAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274472" ref_strand="+" ref_description="SGN-E274472 [cLEN-11-C11]">
      <seq>agatttggtcatatttaactccatgctttccatatttgctcggaacaagctatatgaccgtgctcatgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggatatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgcaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90570" stop="91700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90870" g_stop="91400" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E274472" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90870" e_stop="91400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGA</genome_strand>
        <mrna_strand>AGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCTCGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGCAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350196" ref_strand="+" ref_description="SGN-E350196 [cTOS-4-I20]">
      <seq>aagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatctttgcaacgatttgcttctcgagttagggaaaatatggaatcatgacttagtaattccatgggatgtccactctttgataaactgacgtccaagttgactaggagagagagacgaagttcctcgacttgttattttgcttctatgaaattgtagattccattcacatccttagttttaacttgctttgaagagacttcacactgcgcgatgaacaaaagaacaacattttgactgttccttaatgggaccggctttgtgtatctgagttactgcactacaccaagttcttagtacttttggactttgcaagatgagtttataaattcagaaaatgaatgttacagggttccttttgtattattagtagtttgatattaatatataagtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90763" stop="92095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91063" g_stop="91795" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E350196" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91063" e_stop="91795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTTAGTTTAACCTGC-TTGGAGAGACTTCACACTGCGCGATG-ACCAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCAATACACCAAGTTTTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACA-GGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCA</genome_strand>
        <mrna_strand>AAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTAGTTTTAACTTGCTTTGAAGAGACTTCACACTGCGCGATGAACAAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCACTACACCAAGTTCTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267705" ref_strand="-" ref_description="SGN-E267705 [cLEI-12-I22]">
      <seq>ggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatctttgcaacgatttgcttctcgagttagggaaaatatggaatcatgacttagtaattccatgggatgtccactctttgataaactgacgtccaagttgactaggagagagagacgaagttcctcgacttgttattttgcttctatgaaattgtagattccattcacatccttagttttaacttgctttgaagagacttcacactgcgcgatgaacaaaagaacaacattttgactgttccttaatgggaccggctttgtgtatctgagttactgcactacaccaagttcttagtacttttggactttgcaagatgagtttataaattcagaaaatgaatgttacaggttccttttgtattattagtagtttgatattaatatataagtttcatttcattgctaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0186J16-HI6fF/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0186J16.1" temp_strand="+" temp_description="C07HBa0186J16.1  AC236940.1 htgs_phase:1 submitted_to_sgn_as:gi|242118058|gb|AC236940.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0186J16, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces">
        <position start="90945" stop="92114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91245" g_stop="91806" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="589"/>
      <MATCH_line gen_id="C07HBa0186J16.1" gen_strand="+" ref_id="SGN-E267705" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0186J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267705" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91245" e_stop="91806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTTAGTTTAACCTGC-TTGGAGAGACTTCACACTGCGCGATG-ACCAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCAATACACCAAGTTTTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTC</genome_strand>
        <mrna_strand>GGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTAGTTTTAACTTGCTTTGAAGAGACTTCACACTGCGCGATGAACAAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCACTACACCAAGTTCTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="52102" PGL_stop="42869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52102" e_stop="52039"/>
            <exon e_start="51633" e_stop="51538"/>
            <exon e_start="45512" e_stop="45441"/>
            <exon e_start="45348" e_stop="45253"/>
            <exon e_start="44200" e_stop="44096"/>
            <exon e_start="43138" e_stop="42869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.173" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.730" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52102" e_stop="52039" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.173">
            <gDNA_intron_boundary i_start="52038" i_stop="51634" i_length="405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51633" e_stop="51538" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.730">
            <gDNA_intron_boundary i_start="51537" i_stop="45513" i_length="6025"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45512" e_stop="45441" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45440" i_stop="45349" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45348" e_stop="45253" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.878">
            <gDNA_intron_boundary i_start="45252" i_stop="44201" i_length="1052"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44200" e_stop="44096" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44095" i_stop="43139" i_length="957"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="43138" e_stop="42869" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52102" stop="52039"/>
              <exon start="51633" stop="51538"/>
              <exon start="45512" stop="45441"/>
              <exon start="45348" stop="45253"/>
              <exon start="44200" stop="44096"/>
              <exon start="43138" stop="42869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52102" stop="52039"/>
              <exon start="51633" stop="51538"/>
              <exon start="45512" stop="45441"/>
              <exon start="45348" stop="45253"/>
              <exon start="44200" stop="44096"/>
              <exon start="43138" stop="43016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45283" stop="45253"/>
              <exon start="44200" stop="44096"/>
              <exon start="43138" stop="42871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATGTGCATCTTTGCTGTACGAGCGGTGATAGTTCAGATAGCTTTTTATTTGCATATTCAG : ACTTATGTATATAAAAGAGCAGCTGTCCTTTCAAGACCTTTAATATTTGCAACAGCATTTATGAGTTTTTTCTCAGTTGTTATAGCATTATTCAAG : GACATACCTGATATTGTTGGTGACAAGATCTTTGGAATTCAATCTTTTACTGTCCGCTTGGGTCAAGAGAGG : GTCTTTTGGATTTGTATTGGTCTACTTGAAATGGCTTATCTTGTTGCCATCGTAGTGGGTGCAGCATCTTCCAACACCTGGAGCAAATATTTTACT : ATTCTGGGTCATTCTGCTTTGGCTCTTTTACTTTGGACTCGTGCCAAATCAGTCGACTTCAGTAGTAAAGCAGCAATAACATCCTTTTACATGTTCATATGGAAG : CTTTTTTATGCAGAGTATCTGCTCATACCGCTCGTGAGGTGAATGAATGTACAAGCCTCTCAACTTTCACTGGAAGTGGTAAAGTTCTCCTAGACTTTGAAAATTATTCTAATTCTGGTAAATGTAATTTTGGGTAAAAGAAATTGCACCTAATTGTGTTGCATTTTCATAATCAGATTAACTGTTTCTGATTATTCAGATTCTGTTTGATTATTCCCTTAAAATAAAGGGAGAAGGATAAAAAAATACTCCCAACTTTCGTCTAATAGT</gDNA_template>
            <first_frame> C  N  V  H  L  C  C  T  S  G  D  S  S  D  S  F  L  F  A  Y  S   : D  L  C  I  *  K  S  S  C  P  F  K  T  F  N  I  C  N  S  I  Y  E  F  F  L  S  C  Y  S  I  I  Q   : G  H  T  *  Y  C  W  *  Q  D  L  W  N  S  I  F  Y  C  P  L  G  S  R  E   : G  L  L  D  L  Y  W  S  T  *  N  G  L  S  C  C  H  R  S  G  C  S  I  F  Q  H  L  E  Q  I  F  Y   : Y  S  G  S  F  C  F  G  S  F  T  L  D  S  C  Q  I  S  R  L  Q  *  *  S  S  N  N  I  L  L  H  V  H  M  E   : A  F  L  C  R  V  S  A  H  T  A  R  E  V  N  E  C  T  S  L  S  T  F  T  G  S  G  K  V  L  L  D  F  E  N  Y  S  N  S  G  K  C  N  F  G  *  K  K  L  H  L  I  V  L  H  F  H  N  Q  I  N  C  F  *  L  F  R  F  C  L  I  I  P  L  K  *  R  E  K  D  K  K  I  L  P  T  F  V  *  *  </first_frame>
            <second_frame>  A  M  C  I  F  A  V  R  A  V  I  V  Q  I  A  F  Y  L  H  I  Q  :  T  Y  V  Y  K  R  A  A  V  L  S  R  P  L  I  F  A  T  A  F  M  S  F  F  S  V  V  I  A  L  F  K  :  D  I  P  D  I  V  G  D  K  I  F  G  I  Q  S  F  T  V  R  L  G  Q  E  R  :  V  F  W  I  C  I  G  L  L  E  M  A  Y  L  V  A  I  V  V  G  A  A  S  S  N  T  W  S  K  Y  F  T  :  I  L  G  H  S  A  L  A  L  L  L  W  T  R  A  K  S  V  D  F  S  S  K  A  A  I  T  S  F  Y  M  F  I  W  K  :  L  F  Y  A  E  Y  L  L  I  P  L  V  R  *  M  N  V  Q  A  S  Q  L  S  L  E  V  V  K  F  S  *  T  L  K  I  I  L  I  L  V  N  V  I  L  G  K  R  N  C  T  *  L  C  C  I  F  I  I  R  L  T  V  S  D  Y  S  D  S  V  *  L  F  P  *  N  K  G  R  R  I  K  K  Y  S  Q  L  S  S  N  S </second_frame>
            <third_frame>   Q  C  A  S  L  L  Y  E  R  *  *  F  R  *  L  F  I  C  I  F  R :   L  M  Y  I  K  E  Q  L  S  F  Q  D  L  *  Y  L  Q  Q  H  L  *  V  F  S  Q  L  L  *  H  Y  S  R :   T  Y  L  I  L  L  V  T  R  S  L  E  F  N  L  L  L  S  A  W  V  K  R  G :   S  F  G  F  V  L  V  Y  L  K  W  L  I  L  L  P  S  *  W  V  Q  H  L  P  T  P  G  A  N  I  L  L :   F  W  V  I  L  L  W  L  F  Y  F  G  L  V  P  N  Q  S  T  S  V  V  K  Q  Q  *  H  P  F  T  C  S  Y  G  S :   F  F  M  Q  S  I  C  S  Y  R  S  *  G  E  *  M  Y  K  P  L  N  F  H  W  K  W  *  S  S  P  R  L  *  K  L  F  *  F  W  *  M  *  F  W  V  K  E  I  A  P  N  C  V  A  F  S  *  S  D  *  L  F  L  I  I  Q  I  L  F  D  Y  S  L  K  I  K  G  E  G  *  K  N  T  P  N  F  R  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52101" stop="52039"/>
                    <exon start="51633" stop="51538"/>
                    <exon start="45512" stop="45441"/>
                    <exon start="45348" stop="45253"/>
                    <exon start="44200" stop="44096"/>
                    <exon start="43138" stop="43097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMCIFAVRAVIVQIAFYLHIQTYVYKRAAVLSRPLIFATAFMSFFSVVIALFKDIPDIVGDKIFGIQSFTVRLGQERVFWICIGLLEMAYLVAIVVGAASSNTWSKYFTILGHSALALLLWTRAKSVDFSSKAAITSFYMFIWKLFYAEYLLIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="59160" PGL_stop="54802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59160" e_stop="58934"/>
            <exon e_start="57380" e_stop="57094"/>
            <exon e_start="56168" e_stop="56085"/>
            <exon e_start="56003" e_stop="55929"/>
            <exon e_start="54992" e_stop="54802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.903"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="0.993"/>
          <exon-intron don_prob="0.218" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="59160" e_stop="58934" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="57380" e_stop="57094" e_length="287"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="57093" i_stop="56169" i_length="925"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56168" e_stop="56085" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.218" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56003" e_stop="55929" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="55928" i_stop="54993" i_length="936"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="54992" e_stop="54802" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59160" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59092" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55929"/>
              <exon start="54992" stop="54914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59092" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59080" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55929"/>
              <exon start="54992" stop="54909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55929"/>
              <exon start="54992" stop="54802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59057" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59033" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58973" stop="58934"/>
              <exon start="57380" stop="57094"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55929"/>
              <exon start="54992" stop="54909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCGACAAAAATTTTCTATTTTGGTTTTAGTGTATTCTTTTAAAAATATGCCAAAAATTGAAATGAGAAATAGCAGTATCCCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCA : GTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACA : GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG : GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTGGTTTAAACCAGTTGTCTGACATCGAAATAGACAAG : GTAAACAAGCCATATCTTCCATTGGCATCAGGGGAATACTCTGTACAAACTGGAGTGATTGTTGTGTCGTCTTTTGCCATTTTGGTAATATAAAACCCTTCCCTTTAAGCACTAAAATCTTCGTCTCAAGCTGTGAATGCATTCCATCTCTTATATTGCAGTTGTTCATATACGTGGTAAACATTTATCTT</gDNA_template>
            <first_frame> P  R  Q  K  F  S  I  L  V  L  V  Y  S  F  K  N  M  P  K  I  E  M  R  N  S  S  I  P  C  S  E  A  *  F  Q  V  V  Q  S  R  V  E  F  S  A  D  L  K  I  K  N  G  I  F  A  Y  W  V  L  S  *  T  I  N  S  S  S  C  *  V  F  S  T  Q  N  Q :   F  T  C  N  T  T  G  F  A  M  *  S  M  E  E  T  K  K  A  L  F  L  F  N  E  V  A  A  A  V  Y  H  A  R  A  C  W  R  K  *  S  K  H  Y  C  C  *  *  K  T  *  R  E  I  F  G  A  R  I  I  *  T  P  S  *  I  S  T  F  *  K  S  L  G  L  S  *  *  C  R  R  C  F  L  Q  V  L  A  A  P  Y  H  N  R  N   : S  I  E  H  N  F  S  F  S  P  C  S  *  E  V  L  *  F  F  S  I  I  F  H  W  G  V  R   : G  H  C  C  C  P  I  H  E  H  L  H  S  W  F  K  P  V  V  *  H  R  N  R  Q   : G  K  Q  A  I  S  S  I  G  I  R  G  I  L  C  T  N  W  S  D  C  C  V  V  F  C  H  F  G  N  I  K  P  F  P  L  S  T  K  I  F  V  S  S  C  E  C  I  P  S  L  I  L  Q  L  F  I  Y  V  V  N  I  Y  L </first_frame>
            <second_frame>  P  D  K  N  F  L  F  W  F  *  C  I  L  L  K  I  C  Q  K  L  K  *  E  I  A  V  S  H  V  L  K  L  N  F  R  *  F  K  V  E  W  S  S  V  L  I  *  K  S  K  M  E  S  L  L  I  G  S  F  H  R  P  S  I  P  V  P  A  E  F  S  P  L  K  T   : S  S  H  A  I  L  R  V  L  Q  C  K  A  W  K  R  P  K  K  H  Y  S  S  S  M  K  L  Q  R  Q  Y  I  T  Q  E  H  V  G  G  S  D  L  S  T  I  A  A  D  K  K  L  K  G  R  F  L  V  H  A  S  S  E  H  P  L  E  S  Q  P  S  K  S  P  W  D  S  V  N  D  A  V  D  A  F  Y  R  F  S  R  P  H  T  I  I  G  T  :  A  L  S  I  I  S  V  S  L  L  A  V  E  K  F  S  D  F  S  P  L  F  F  T  G  V  L  E  :  A  I  V  A  A  L  F  M  N  I  Y  I  V  G  L  N  Q  L  S  D  I  E  I  D  K  :  V  N  K  P  Y  L  P  L  A  S  G  E  Y  S  V  Q  T  G  V  I  V  V  S  S  F  A  I  L  V  I  *  N  P  S  L  *  A  L  K  S  S  S  Q  A  V  N  A  F  H  L  L  Y  C  S  C  S  Y  T  W  *  T  F  I   </second_frame>
            <third_frame>   P  T  K  I  F  Y  F  G  F  S  V  F  F  *  K  Y  A  K  N  *  N  E  K  *  Q  Y  P  M  F  *  S  L  I  S  G  S  S  K  *  S  G  V  Q  C  *  F  K  N  Q  K  W  N  L  C  L  L  G  P  F  I  D  H  Q  F  Q  F  L  L  S  F  L  H  S  K  P  :  V  H  M  Q  Y  Y  G  F  C  N  V  K  H  G  R  D  Q  K  S  T  I  P  L  Q  *  S  C  S  G  S  I  S  R  K  S  M  L  E  E  V  I  *  A  L  L  L  L  I  K  N  L  K  G  D  F  W  C  T  H  H  L  N  T  L  L  N  L  N  L  L  K  V  L  G  T  Q  L  M  M  P  *  M  L  S  T  G  S  R  G  P  I  P  *  *  E  Q :   H  *  A  *  F  Q  F  L  S  L  Q  L  R  S  S  L  I  F  L  H  Y  F  S  L  G  C  *  R :   P  L  L  L  P  Y  S  *  T  F  T  *  L  V  *  T  S  C  L  T  S  K  *  T  R :   *  T  S  H  I  F  H  W  H  Q  G  N  T  L  Y  K  L  E  *  L  L  C  R  L  L  P  F  W  *  Y  K  T  L  P  F  K  H  *  N  L  R  L  K  L  *  M  H  S  I  S  Y  I  A  V  V  H  I  R  G  K  H  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59018" stop="58934"/>
                    <exon start="57380" stop="57094"/>
                    <exon start="56168" stop="56085"/>
                    <exon start="56003" stop="55929"/>
                    <exon start="54992" stop="54900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKMESLLIGSFHRPSIPVPAEFSPLKTSSHAILRVLQCKAWKRPKKHYSSSMKLQRQYITQEHVGGSDLSTIAADKKLKGRFLVHASSEHPLESQPSKSPWDSVNDAVDAFYRFSRPHTIIGTALSIISVSLLAVEKFSDFSPLFFTGVLEAIVAALFMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVQTGVIVVSSFAILVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59079" e_stop="58934"/>
            <exon e_start="57380" e_stop="57093"/>
            <exon e_start="56168" e_stop="56085"/>
            <exon e_start="56003" e_stop="55964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="0.993"/>
          <exon-intron don_prob="0.218" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59079" e_stop="58934" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58933" i_stop="57381" i_length="1553"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="57380" e_stop="57093" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="57092" i_stop="56169" i_length="924"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56168" e_stop="56085" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.218" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56084" i_stop="56004" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56003" e_stop="55964" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59079" stop="58934"/>
              <exon start="57380" stop="57093"/>
              <exon start="56168" stop="56085"/>
              <exon start="56003" stop="55964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312055" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATGTTCTGAAGCTTAATTTCAGGTAGTTCAAAGTAGAGTGGAGTTCAGTGCTGATTTAAAAATCAAAAATGGAATCTTTGCTTATTGGGTCCTTTCATAGACCATCAATTCCAGTTCCTGCTGAGTTTTCTCCACTCAAAACCA : GTTCACATGCAATACTACGGGTTTTGCAATGTAAAGCATGGAAGAGACCAAAAAAGCACTATTCCTCTTCAATGAAGTTGCAGCGGCAGTATATCACGCAAGAGCATGTTGGAGGAAGTGATCTAAGCACTATTGCTGCTGATAAAAAACTTAAAGGGAGATTTTTGGTGCACGCATCATCTGAACACCCTCTTGAATCTCAACCTTCTAAAAGTCCTTGGGACTCAGTTAATGATGCCGTAGATGCTTTCTACAGGTTCTCGCGGCCCCATACCATAATAGGAACAG : GCATTGAGCATAATTTCAGTTTCTCTCCTTGCAGTTGAGAAGTTCTCTGATTTTTCTCCATTATTTTTCACTGGGGTGTTAGAG : GCCATTGTTGCTGCCCTATTCATGAACATTTACATAGTTG</gDNA_template>
            <first_frame> P  C  S  E  A  *  F  Q  V  V  Q  S  R  V  E  F  S  A  D  L  K  I  K  N  G  I  F  A  Y  W  V  L  S  *  T  I  N  S  S  S  C  *  V  F  S  T  Q  N  Q :   F  T  C  N  T  T  G  F  A  M  *  S  M  E  E  T  K  K  A  L  F  L  F  N  E  V  A  A  A  V  Y  H  A  R  A  C  W  R  K  *  S  K  H  Y  C  C  *  *  K  T  *  R  E  I  F  G  A  R  I  I  *  T  P  S  *  I  S  T  F  *  K  S  L  G  L  S  *  *  C  R  R  C  F  L  Q  V  L  A  A  P  Y  H  N  R  N  R :   H  *  A  *  F  Q  F  L  S  L  Q  L  R  S  S  L  I  F  L  H  Y  F  S  L  G  C  *  R :   P  L  L  L  P  Y  S  *  T  F  T  *  L </first_frame>
            <second_frame>  H  V  L  K  L  N  F  R  *  F  K  V  E  W  S  S  V  L  I  *  K  S  K  M  E  S  L  L  I  G  S  F  H  R  P  S  I  P  V  P  A  E  F  S  P  L  K  T   : S  S  H  A  I  L  R  V  L  Q  C  K  A  W  K  R  P  K  K  H  Y  S  S  S  M  K  L  Q  R  Q  Y  I  T  Q  E  H  V  G  G  S  D  L  S  T  I  A  A  D  K  K  L  K  G  R  F  L  V  H  A  S  S  E  H  P  L  E  S  Q  P  S  K  S  P  W  D  S  V  N  D  A  V  D  A  F  Y  R  F  S  R  P  H  T  I  I  G  T   : G  I  E  H  N  F  S  F  S  P  C  S  *  E  V  L  *  F  F  S  I  I  F  H  W  G  V  R   : G  H  C  C  C  P  I  H  E  H  L  H  S   </second_frame>
            <third_frame>   M  F  *  S  L  I  S  G  S  S  K  *  S  G  V  Q  C  *  F  K  N  Q  K  W  N  L  C  L  L  G  P  F  I  D  H  Q  F  Q  F  L  L  S  F  L  H  S  K  P  :  V  H  M  Q  Y  Y  G  F  C  N  V  K  H  G  R  D  Q  K  S  T  I  P  L  Q  *  S  C  S  G  S  I  S  R  K  S  M  L  E  E  V  I  *  A  L  L  L  L  I  K  N  L  K  G  D  F  W  C  T  H  H  L  N  T  L  L  N  L  N  L  L  K  V  L  G  T  Q  L  M  M  P  *  M  L  S  T  G  S  R  G  P  I  P  *  *  E  Q  :  A  L  S  I  I  S  V  S  L  L  A  V  E  K  F  S  D  F  S  P  L  F  F  T  G  V  L  E  :  A  I  V  A  A  L  F  M  N  I  Y  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59018" stop="58934"/>
                    <exon start="57380" stop="57093"/>
                    <exon start="56168" stop="56131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKMESLLIGSFHRPSIPVPAEFSPLKTSSHAILRVLQCKAWKRPKKHYSSSMKLQRQYITQEHVGGSDLSTIAADKKLKGRFLVHASSEHPLESQPSKSPWDSVNDAVDAFYRFSRPHTIIGTGIEHNFSFSPCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="77208" PGL_stop="75284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77208" e_stop="76987"/>
            <exon e_start="75650" e_stop="75284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.905"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="77208" e_stop="76987" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76986" i_stop="75651" i_length="1336"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="75650" e_stop="75284" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77208" stop="76987"/>
              <exon start="75650" stop="75284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGATTTGTTATTCCGGGAGATTTTCTCTAATTTTTTAGCGATCTCAGCATAAGGGCATTATCCATAGGATCCACCTGCTACAGTGTCCAACACCGCTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATACGGTGATTTGAACACTTCTCAAGA : ATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAGACATTTCTTAATTGGTTCCAAGTGAAGATTAAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTATCCCGTCAGTAAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTACATTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTAAAAACAAACCTCTGTCAGTGAGCATTTGCATCACGCTACTAGTCACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  L  Q  D  L  L  F  R  E  I  F  S  N  F  L  A  I  S  A  *  G  H  Y  P  *  D  P  P  A  T  V  S  N  T  A  L  L  L  S  S  C  P  R  *  K  Y  S  F  S  D  S  S  S  I  R  *  F  E  H  F  S  R  :  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  L  C  L  C  G  L  V  S  W  R  P  D  S  S  V  L  R  R  H  F  L  I  G  S  K  *  R  L  S  C  M  G  A  Q  *  T  T  *  Q  P  I  P  S  V  R  E  E  T  L  *  A  L  L  H  L  D  P  N  Q  A  S  P  H  N  F  Y  T  L  P  L  H  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  T  N  L  C  Q  *  A  F  A  S  R  Y  *  S  P  Q  </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  I  C  Y  S  G  R  F  S  L  I  F  *  R  S  Q  H  K  G  I  I  H  R  I  H  L  L  Q  C  P  T  P  L  C  C  Y  H  P  V  P  D  R  S  I  P  S  V  T  H  H  L  Y  G  D  L  N  T  S  Q  E :   *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  H  S  V  F  V  V  *  F  L  G  D  R  I  V  A  C  *  E  D  I  S  *  L  V  P  S  E  D  *  V  V  W  E  L  S  E  P  H  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  I  Q  I  R  P  P  H  T  T  F  T  H  C  P  Y  I  S  Y  M  G  M  W  I  L  R  R  *  P  *  K  Q  T  S  V  S  E  H  L  H  H  A  T  S  H  H  K </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  T  P  R  F  V  I  P  G  D  F  L  *  F  F  S  D  L  S  I  R  A  L  S  I  G  S  T  C  Y  S  V  Q  H  R  F  V  V  I  I  L  S  P  I  E  V  F  L  Q  *  L  I  I  Y  T  V  I  *  T  L  L  K   : N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  F  L  N  W  F  Q  V  K  I  K  L  Y  G  S  S  V  N  H  I  A  A  Y  P  V  S  K  R  G  N  T  L  S  P  I  T  S  R  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  G  S  P  K  N  K  P  L  S  V  S  I  C  I  T  L  L  V  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75546" stop="75286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKKTFLNWFQVKIKLYGSSVNHIAAYPVSKRGNTLSPITSRSKSGLPTQLLHTALTLAIWACGSSEGSPKNKPLSVSICITLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="81431" PGL_stop="80716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81431" e_stop="80716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="81431" e_stop="80716" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81431" stop="80716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81423" stop="81050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATCTTAGTACTAGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGAAGGACCCTCATAGCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTACACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCGGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAAGGCTTTTGGACACACTAAACTTAAGGGAAAAGTATTAATAATACCGTGAAACCATGGTATATCAATACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTAGACAATCTTTGTACAATAGTATCTATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCGCTATTAGGCTTGAATTTTGTGGGATCAGAACATGACACAGACTCACCACGCACTAACACCTATCCTCTTCAATTTTTCACCGGGGTACTAGCAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCACTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  S  T  L  G  I  L  V  L  G  S  L  L  *  T  S  R  R  T  C  R  K  D  P  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  C  S  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  R  K  K  A  F  G  H  T  K  L  K  G  K  V  L  I  I  P  *  N  H  G  I  S  I  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  R  Q  S  L  Y  N  S  I  Y  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  A  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  T  H  *  H  L  S  S  S  I  F  H  R  G  T  S  N  S  G  I  A  T  S  V  L  T  L  K  Q  N  P  P  F  S  H  N  D  F  T  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  R  S  K  T  L  Q  L  L  E  S  *  Y  *  D  H  F  S  E  L  H  D  E  P  A  G  R  T  L  I  A  T  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  Y  T  T  L  P  P  T  D  R  H  K  H  D  G  P  S  Y  A  P  *  V  V  S  S  A  F  L  R  S  K  S  R  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  A  K  R  L  L  D  T  L  N  L  R  E  K  Y  *  *  Y  R  E  T  M  V  Y  Q  Y  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  D  N  L  C  T  I  V  S  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  S  E  H  D  T  D  S  P  R  T  N  T  Y  P  L  Q  F  F  T  G  V  L  A  I  L  V  L  Q  L  V  S  S  L  *  N  K  I  L  L  F  H  T  M  I  S  L  *  V  *  G  L  </second_frame>
            <third_frame>   R  V  F  V  P  K  H  F  N  S  W  N  L  S  T  R  I  T  S  L  N  F  T  T  N  L  Q  E  G  P  S  *  P  R  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  T  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  M  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  G  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  W  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  *  T  I  F  V  Q  *  Y  L  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  R  Y  *  A  *  I  L  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  G  Y  *  Q  F  W  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  H  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81064" stop="80768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRETMVYQYPQLKFVVCPQATHYDSLDNLCTIVSMFYPLQSFGYQSRLISSNLCMLSLLGLNFVGSEHDTDSPRTNTYPLQFFTGVLAILVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81333" stop="81121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRTVTSFVIPHLVRLPHLPSAATLRCHLRTVTSTTDRHMLRRWSLLHFFAQNLGIQLWTDFLQNKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="88764" PGL_stop="89951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88764" e_stop="89951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="88764" e_stop="89951" e_length="1188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88764" stop="89254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88784" stop="89640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89540" stop="89951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAGAGTTGGATTGGAAGTAATTGAAATGAGTGTGTGGGTGTGGTAGAATCCGCTATCTCTCAGTATAGCTTTGCCCCGTTCTTTTCTCTCAATCATTCTATCTATCATCAAAAATGCCGAATTGAGAGTCTTGTGCCACTCCAATATTATCTTCAGCCATGGAAGGTTCTCTCTTCCCTAATAGACCAATCTTGCCAATCCAATCAACAAAACCAACACCTTTACCACCAACCCAGCGCCTCAAATTGAATCCCACCACCACCACTTCCCCTCTCCCACCTCTCAAACAACAGCAGCAACAAACCCCTTCTTCTTCTACTTCTACTTCTTTCCCTCTTGATTCTCTTCTCCAACATCTTCTTCATGTTTCATCTTCAAATCCTCCAAGAACTGTTAAATCTTCAAGAATTAGCAATACCCATTTGTCTACTCTTCCTGTTTCTTTGGAAAATGATGACACCCTTTTTGGGAATACGAGGGTTACTGTTCCCAAAATGGAATCTTTTGATGATGGGTCACTTGAATTTCTCCCTCTTAACTGTAAGTTAATGATTGATTCAATTCTTGAACGCCCTCTTTCTCATATGACTGAATTCTTTGATTCTGTGAAACTTGAGTTGCTTGAAGTTGATTTGATGAGTCTTTTGAAAGGCTTAGATGTTTTAGGCAAATGGGATAGAGCTATTTTGTTGTTTGAATGGGCTGTTTTGAACATTCATGTTGAAAATGAAAAGCTAGATAGTCAAGTTATTGAATTTATGGTGAAGGTTTTGGGTAGGGAATCACAGCATTTGGTGACGTCGAAACTGTTTGATGTTATTCCATTCGAAGATTACTCTCTTGATGTCCGAGCGTGGACAACTGTTCTACATGCTTATTCTAGGATTGGCAAGTATGACAAGGCAATTGCATTGTTTGAATATGTGAAAGAGAAGGGTTTATCTGTCACTTTGGTAACTTATAATGTTATGTTAGATGTTTATGGTAAAAAGGGTAGGTCTTGGAACAATATTTTACTGCTTTTAGATGAAATGACAAGTAACGGGCTTGAATTTGACGAGTTCACTTGTAGCACGGTTATTGCTGCTTGTGGAAGGGAAGGGTTGTTGGAGGAAGCGAAAGAGTTTTTTGATGTATTGAAGAGAAAGGGTTATGTTCCGGGAACAGTTACTTACAATTCTTTACT</gDNA_template>
            <first_frame> C  R  V  G  L  E  V  I  E  M  S  V  W  V  W  *  N  P  L  S  L  S  I  A  L  P  R  S  F  L  S  I  I  L  S  I  I  K  N  A  E  L  R  V  L  C  H  S  N  I  I  F  S  H  G  R  F  S  L  P  *  *  T  N  L  A  N  P  I  N  K  T  N  T  F  T  T  N  P  A  P  Q  I  E  S  H  H  H  H  F  P  S  P  T  S  Q  T  T  A  A  T  N  P  F  F  F  Y  F  Y  F  F  P  S  *  F  S  S  P  T  S  S  S  C  F  I  F  K  S  S  K  N  C  *  I  F  K  N  *  Q  Y  P  F  V  Y  S  S  C  F  F  G  K  *  *  H  P  F  W  E  Y  E  G  Y  C  S  Q  N  G  I  F  *  *  W  V  T  *  I  S  P  S  *  L  *  V  N  D  *  F  N  S  *  T  P  S  F  S  Y  D  *  I  L  *  F  C  E  T  *  V  A  *  S  *  F  D  E  S  F  E  R  L  R  C  F  R  Q  M  G  *  S  Y  F  V  V  *  M  G  C  F  E  H  S  C  *  K  *  K  A  R  *  S  S  Y  *  I  Y  G  E  G  F  G  *  G  I  T  A  F  G  D  V  E  T  V  *  C  Y  S  I  R  R  L  L  S  *  C  P  S  V  D  N  C  S  T  C  L  F  *  D  W  Q  V  *  Q  G  N  C  I  V  *  I  C  E  R  E  G  F  I  C  H  F  G  N  L  *  C  Y  V  R  C  L  W  *  K  G  *  V  L  E  Q  Y  F  T  A  F  R  *  N  D  K  *  R  A  *  I  *  R  V  H  L  *  H  G  Y  C  C  L  W  K  G  R  V  V  G  G  S  E  R  V  F  *  C  I  E  E  K  G  L  C  S  G  N  S  Y  L  Q  F  F  T </first_frame>
            <second_frame>  V  E  L  D  W  K  *  L  K  *  V  C  G  C  G  R  I  R  Y  L  S  V  *  L  C  P  V  L  F  S  Q  S  F  Y  L  S  S  K  M  P  N  *  E  S  C  A  T  P  I  L  S  S  A  M  E  G  S  L  F  P  N  R  P  I  L  P  I  Q  S  T  K  P  T  P  L  P  P  T  Q  R  L  K  L  N  P  T  T  T  T  S  P  L  P  P  L  K  Q  Q  Q  Q  Q  T  P  S  S  S  T  S  T  S  F  P  L  D  S  L  L  Q  H  L  L  H  V  S  S  S  N  P  P  R  T  V  K  S  S  R  I  S  N  T  H  L  S  T  L  P  V  S  L  E  N  D  D  T  L  F  G  N  T  R  V  T  V  P  K  M  E  S  F  D  D  G  S  L  E  F  L  P  L  N  C  K  L  M  I  D  S  I  L  E  R  P  L  S  H  M  T  E  F  F  D  S  V  K  L  E  L  L  E  V  D  L  M  S  L  L  K  G  L  D  V  L  G  K  W  D  R  A  I  L  L  F  E  W  A  V  L  N  I  H  V  E  N  E  K  L  D  S  Q  V  I  E  F  M  V  K  V  L  G  R  E  S  Q  H  L  V  T  S  K  L  F  D  V  I  P  F  E  D  Y  S  L  D  V  R  A  W  T  T  V  L  H  A  Y  S  R  I  G  K  Y  D  K  A  I  A  L  F  E  Y  V  K  E  K  G  L  S  V  T  L  V  T  Y  N  V  M  L  D  V  Y  G  K  K  G  R  S  W  N  N  I  L  L  L  L  D  E  M  T  S  N  G  L  E  F  D  E  F  T  C  S  T  V  I  A  A  C  G  R  E  G  L  L  E  E  A  K  E  F  F  D  V  L  K  R  K  G  Y  V  P  G  T  V  T  Y  N  S  L   </second_frame>
            <third_frame>   *  S  W  I  G  S  N  *  N  E  C  V  G  V  V  E  S  A  I  S  Q  Y  S  F  A  P  F  F  S  L  N  H  S  I  Y  H  Q  K  C  R  I  E  S  L  V  P  L  Q  Y  Y  L  Q  P  W  K  V  L  S  S  L  I  D  Q  S  C  Q  S  N  Q  Q  N  Q  H  L  Y  H  Q  P  S  A  S  N  *  I  P  P  P  P  L  P  L  S  H  L  S  N  N  S  S  N  K  P  L  L  L  L  L  L  L  L  S  L  L  I  L  F  S  N  I  F  F  M  F  H  L  Q  I  L  Q  E  L  L  N  L  Q  E  L  A  I  P  I  C  L  L  F  L  F  L  W  K  M  M  T  P  F  L  G  I  R  G  L  L  F  P  K  W  N  L  L  M  M  G  H  L  N  F  S  L  L  T  V  S  *  *  L  I  Q  F  L  N  A  L  F  L  I  *  L  N  S  L  I  L  *  N  L  S  C  L  K  L  I  *  *  V  F  *  K  A  *  M  F  *  A  N  G  I  E  L  F  C  C  L  N  G  L  F  *  T  F  M  L  K  M  K  S  *  I  V  K  L  L  N  L  W  *  R  F  W  V  G  N  H  S  I  W  *  R  R  N  C  L  M  L  F  H  S  K  I  T  L  L  M  S  E  R  G  Q  L  F  Y  M  L  I  L  G  L  A  S  M  T  R  Q  L  H  C  L  N  M  *  K  R  R  V  Y  L  S  L  W  *  L  I  M  L  C  *  M  F  M  V  K  R  V  G  L  G  T  I  F  Y  C  F  *  M  K  *  Q  V  T  G  L  N  L  T  S  S  L  V  A  R  L  L  L  L  V  E  G  K  G  C  W  R  K  R  K  S  F  L  M  Y  *  R  E  R  V  M  F  R  E  Q  L  L  T  I  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88891" stop="89949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESCATPILSSAMEGSLFPNRPILPIQSTKPTPLPPTQRLKLNPTTTTSPLPPLKQQQQQTPSSSTSTSFPLDSLLQHLLHVSSSNPPRTVKSSRISNTHLSTLPVSLENDDTLFGNTRVTVPKMESFDDGSLEFLPLNCKLMIDSILERPLSHMTEFFDSVKLELLEVDLMSLLKGLDVLGKWDRAILLFEWAVLNIHVENEKLDSQVIEFMVKVLGRESQHLVTSKLFDVIPFEDYSLDVRAWTTVLHAYSRIGKYDKAIALFEYVKEKGLSVTLVTYNVMLDVYGKKGRSWNNILLLLDEMTSNGLEFDEFTCSTVIAACGREGLLEEAKEFFDVLKRKGYVPGTVTYNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="90373" PGL_stop="91806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90373" e_stop="91806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="90373" e_stop="91806" e_length="1434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90373" stop="90707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90374" stop="90765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90559" stop="91118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90579" stop="91306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90611" stop="91507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90858" stop="91594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90869" stop="91453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90870" stop="91400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91063" stop="91795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91245" stop="91806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267705" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAATGTGTGGTAATAGGGGAATGCAAAAATATGTAAATCACGTTTTCCATGAGATGAAAAGCTGTGGTTTTGAGCCTGATAGAGACACATTTAATACTTTGATTCGTGCTTATGGAAGGTGTGATTCTGATTTTAATGCTGCAAAGATGTACGATGAGATGATCCAATCAGGATTCACTCCGTGTGTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTTAGTTTAACCTGCTTGGAGAGACTTCACACTGCGCGATGACCAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCAATACACCAAGTTTTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTC</gDNA_template>
            <first_frame> A  M  C  G  N  R  G  M  Q  K  Y  V  N  H  V  F  H  E  M  K  S  C  G  F  E  P  D  R  D  T  F  N  T  L  I  R  A  Y  G  R  C  D  S  D  F  N  A  A  K  M  Y  D  E  M  I  Q  S  G  F  T  P  C  V  T  T  Y  N  A  L  L  N  A  L  A  R  R  G  D  W  R  A  A  E  S  V  F  S  D  M  K  S  K  G  F  K  P  S  E  T  T  Y  S  L  M  L  H  C  Y  S  K  G  G  N  V  R  G  V  E  R  I  A  K  E  I  Y  D  G  H  I  F  P  S  W  M  L  L  R  T  L  I  L  A  N  F  K  C  R  S  L  M  G  M  E  R  A  F  Q  E  L  Q  K  N  G  Y  R  P  D  L  V  I  F  N  S  M  L  S  I  F  A  R  N  K  L  Y  D  R  A  H  E  V  L  H  L  I  R  E  N  G  L  Q  P  D  L  V  T  Y  N  S  L  M  D  M  Y  A  R  A  G  E  C  W  K  A  E  E  I  L  N  R  L  Q  K  N  G  G  K  P  D  L  V  S  Y  N  T  V  I  K  A  F  C  R  Q  G  R  M  E  E  A  I  R  V  F  S  Q  M  T  E  K  G  I  R  P  C  I  V  T  Y  N  T  F  M  A  G  F  A  A  R  G  M  F  S  E  V  N  E  L  I  S  Y  M  I  Q  H  K  C  R  P  N  E  L  T  Y  K  T  I  V  D  G  Y  C  K  A  K  R  Y  Q  D  A  M  D  F  V  L  N  I  K  E  K  D  N  T  F  D  E  E  S  L  Q  R  F  A  S  R  V  R  E  N  M  E  S  *  L  S  N  S  M  G  C  P  L  F  D  K  L  T  S  K  L  T  R  R  E  R  R  S  S  S  T  C  Y  F  A  S  M  K  L  *  I  P  F  T  S  F  S  L  T  C  L  E  R  L  H  T  A  R  *  P  K  N  N  I  L  T  V  P  *  W  D  R  L  C  V  S  E  L  L  Q  Y  T  K  F  L  V  L  L  D  F  A  R  *  V  Y  K  F  R  K  *  M  L  Q  V  P  F  V  L  L  V  V  *  Y  *  Y  I  S  F  I  S  L  L </first_frame>
            <second_frame>  Q  C  V  V  I  G  E  C  K  N  M  *  I  T  F  S  M  R  *  K  A  V  V  L  S  L  I  E  T  H  L  I  L  *  F  V  L  M  E  G  V  I  L  I  L  M  L  Q  R  C  T  M  R  *  S  N  Q  D  S  L  R  V  S  Q  H  T  M  R  F  L  M  P  L  L  V  E  V  I  G  E  Q  L  N  L  F  S  Q  T  *  K  V  R  A  L  S  P  V  K  L  L  T  L  *  C  S  T  A  I  P  R  E  G  T  *  E  V  W  R  E  S  Q  R  K  F  M  M  V  I  F  F  L  V  G  C  F  *  E  P  S  F  L  Q  I  S  S  V  D  L  S  W  V  W  R  E  H  F  R  N  Y  R  K  M  D  T  G  Q  I  W  S  Y  L  T  P  C  F  P  Y  L  Q  G  T  S  Y  M  T  V  L  M  R  C  C  I  *  L  G  R  M  V  C  S  Q  I  L  L  H  I  I  V  *  W  I  C  M  L  E  P  V  N  V  G  K  L  R  K  S  L  I  D  C  R  R  M  E  E  S  Q  T  L  Y  H  I  T  L  S  S  K  R  S  A  D  K  V  V  W  R  R  P  Y  E  F  S  P  R  *  Q  K  K  E  S  D  L  A  L  L  H  I  I  H  L  W  L  D  L  Q  L  E  E  C  S  L  R  *  M  N  *  S  V  I  *  S  S  T  S  A  D  Q  M  S  *  H  T  R  L  L  L  M  V  I  V  K  Q  K  D  T  K  M  Q  W  I  L  C  *  I  L  K  K  K  I  T  P  L  M  R  N  L  C  N  D  L  L  L  E  L  G  K  I  W  N  H  D  L  V  I  P  W  D  V  H  S  L  I  N  *  R  P  S  *  L  G  E  R  D  E  V  P  R  L  V  I  L  L  L  *  N  C  R  F  H  S  H  P  L  V  *  P  A  W  R  D  F  T  L  R  D  D  Q  R  T  T  F  *  L  F  L  N  G  T  G  F  V  Y  L  S  Y  C  N  T  P  S  F  *  Y  F  W  T  L  Q  D  E  F  I  N  S  E  N  E  C  Y  R  F  L  L  Y  Y  *  *  F  D  I  N  I  *  V  S  F  H  C   </second_frame>
            <third_frame>   N  V  W  *  *  G  N  A  K  I  C  K  S  R  F  P  *  D  E  K  L  W  F  *  A  *  *  R  H  I  *  Y  F  D  S  C  L  W  K  V  *  F  *  F  *  C  C  K  D  V  R  *  D  D  P  I  R  I  H  S  V  C  H  N  I  Q  C  A  S  *  C  P  C  S  S  R  *  L  E  S  S  *  I  C  F  L  R  H  E  K  *  G  L  *  A  Q  *  N  Y  L  L  F  D  A  P  L  L  F  Q  G  R  E  R  E  R  C  G  E  N  R  K  G  N  L  *  W  S  Y  F  S  *  L  D  A  F  E  N  P  H  S  C  K  F  Q  V  *  I  S  H  G  Y  G  E  S  I  S  G  T  T  E  K  W  I  Q  A  R  F  G  H  I  *  L  H  A  F  H  I  C  K  E  Q  A  I  *  P  C  S  *  G  A  A  F  N  *  G  E  W  S  A  A  R  S  C  Y  I  *  *  F  N  G  Y  V  C  *  S  R  *  M  L  E  S  *  G  N  P  *  S  T  A  E  E  W  R  K  A  R  P  C  I  I  *  H  C  H  Q  S  V  L  Q  T  R  S  Y  G  G  G  H  T  S  F  L  P  D  D  R  K  R  N  P  T  L  H  C  Y  I  *  Y  I  Y  G  W  I  C  S  S  R  N  V  L  *  G  K  *  I  D  Q  L  Y  D  P  A  Q  V  Q  T  K  *  A  N  I  Q  D  Y  C  *  W  L  L  *  S  K  K  I  P  R  C  N  G  F  C  V  E  Y  *  R  K  R  *  H  L  *  *  G  I  F  A  T  I  C  F  S  S  *  G  K  Y  G  I  M  T  *  *  F  H  G  M  S  T  L  *  *  T  D  V  Q  V  D  *  E  R  E  T  K  F  L  D  L  L  F  C  F  Y  E  I  V  D  S  I  H  I  L  *  F  N  L  L  G  E  T  S  H  C  A  M  T  K  E  Q  H  F  D  C  S  L  M  G  P  A  L  C  I  *  V  T  A  I  H  Q  V  F  S  T  F  G  L  C  K  M  S  L  *  I  Q  K  M  N  V  T  G  S  F  C  I  I  S  S  L  I  L  I  Y  K  F  H  F  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0186J16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90373" stop="91452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMCGNRGMQKYVNHVFHEMKSCGFEPDRDTFNTLIRAYGRCDSDFNAAKMYDEMIQSGFTPCVTTYNALLNALARRGDWRAAESVFSDMKSKGFKPSETTYSLMLHCYSKGGNVRGVERIAKEIYDGHIFPSWMLLRTLILANFKCRSLMGMERAFQELQKNGYRPDLVIFNSMLSIFARNKLYDRAHEVLHLIRENGLQPDLVTYNSLMDMYARAGECWKAEEILNRLQKNGGKPDLVSYNTVIKAFCRQGRMEEAIRVFSQMTEKGIRPCIVTYNTFMAGFAARGMFSEVNELISYMIQHKCRPNELTYKTIVDGYCKAKRYQDAMDFVLNIKEKDNTFDEESLQRFASRVRENMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 96 chains have been computed
$ 
$ memory statistics:
$ 62264 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 2147 bytes was the average size of a spliced alignment
$ 12040 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2006 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 115 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:09:32
-->
